BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006272
(652 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359490274|ref|XP_002269873.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Vitis
vinifera]
Length = 711
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/721 (69%), Positives = 551/721 (76%), Gaps = 79/721 (10%)
Query: 1 MPSIALFDGKEVKDEKKMNKKMALKDFEETEAALTEKSSDKKKSKKK-ESSKKRKE---- 55
MPS++L D V +KK K ETEA++ +K S K+ K E S E
Sbjct: 1 MPSLSLADPVSVSKDKKEKKLKVKT--LETEASMIKKESKSKRVKSDPEISGSDSEDLKK 58
Query: 56 -----------SEIEE--EEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQER 102
SEI++ E++ SETSSELGEPVN K KKK PE EE+E
Sbjct: 59 KKTKKKEKRKASEIDDDNEDQMSETSSELGEPVN----SSLKAKKKKLKVPEM--EEEEG 112
Query: 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
E+PNA+S FRIS PLREKLKSKGIE+LFPIQAMTFD +LDGSDLVGRARTGQGKTLA
Sbjct: 113 KAEENPNALSNFRISEPLREKLKSKGIEALFPIQAMTFDTILDGSDLVGRARTGQGKTLA 172
Query: 163 FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
FVLPILESL NGP + S+KTGYGR P VLVLLPTRELA QV+ DFDVYGGA+GLTSCCLY
Sbjct: 173 FVLPILESLINGPNRGSRKTGYGRPPCVLVLLPTRELATQVYADFDVYGGAIGLTSCCLY 232
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GGAPY AQE KLK+G+D+V+GTPGRIKDHIERGNID SSLKFRVLDEADEMLRMGFVEDV
Sbjct: 233 GGAPYQAQEIKLKRGVDIVVGTPGRIKDHIERGNIDFSSLKFRVLDEADEMLRMGFVEDV 292
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
ELILGKVED +KVQTLLFSATLP WVK IS++FLK KT DLVGNEKMKASTNVRHIVL
Sbjct: 293 ELILGKVEDVSKVQTLLFSATLPGWVKEISSRFLKPTLKTADLVGNEKMKASTNVRHIVL 352
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTL 402
PCSSSARSQVIPD+IRCYSSGGRTIIFTETK+SAS+LA LLPGARALHGDIQQSQREVTL
Sbjct: 353 PCSSSARSQVIPDVIRCYSSGGRTIIFTETKDSASELAGLLPGARALHGDIQQSQREVTL 412
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR---------- 452
+GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR
Sbjct: 413 SGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVML 472
Query: 453 ---------------------------------AGVEAAETITQVSDSVIPAFKSAAEEL 479
AGVEAA TITQVSDSVIPAFKSAAEEL
Sbjct: 473 FDPRRSNISKIERESGVKFEHVSAPQPADIAKSAGVEAAGTITQVSDSVIPAFKSAAEEL 532
Query: 480 LNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRR 539
LN SGLSA ELLAKALAKA GYTEIKSRSLL+SL++HVTV+LEAGKPIYTPSFA+GVLRR
Sbjct: 533 LNTSGLSAVELLAKALAKASGYTEIKSRSLLASLDNHVTVLLEAGKPIYTPSFAYGVLRR 592
Query: 540 FLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQ 599
FLPE+KV+ +KG+ALTADGNGAVFDV DLD F +G +NAANVSLEVLK LP LQER+Q
Sbjct: 593 FLPEDKVDSIKGLALTADGNGAVFDVATEDLDAFLAGQENAANVSLEVLKALPRLQERDQ 652
Query: 600 SRGRFGGGGRGGFGGRGGNRFS--------GGRGGGFSDRRNDRFSGGFRGSKGRGGGNR 651
SRG GGG G G G S G GGGFS+RRNDRFSGG ++GRG N+
Sbjct: 653 SRGGRFGGGGRGGGFGGRGGGSNRFSGGRGGRGGGGFSNRRNDRFSGG--SNRGRGRSNK 710
Query: 652 W 652
W
Sbjct: 711 W 711
>gi|255539651|ref|XP_002510890.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223550005|gb|EEF51492.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 690
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/643 (71%), Positives = 520/643 (80%), Gaps = 47/643 (7%)
Query: 1 MPSIALFDGKEVKDEKKMNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEE 60
MPSIA+ + EKKM K+++L+ E+ E + +KK KK + +K +SE++E
Sbjct: 1 MPSIAIANNAADLKEKKMKKRISLETSEQPEEEIILSDKKEKKMKKDKKKRKAVDSELDE 60
Query: 61 EEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPL 120
E+ +SETSSEL EPVNLK++K+ KK K A E E G E E E +HPNA+S++RIS L
Sbjct: 61 ED-KSETSSELVEPVNLKTKKKNKKAKIAD-ENEDG--EVETAEEDHPNAISKYRISESL 116
Query: 121 REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180
REKLKSKGI+SLFPIQAMTFD +LDGSDLVGRARTGQGKTLAFVLPILES+TNG K S+
Sbjct: 117 REKLKSKGIQSLFPIQAMTFDDILDGSDLVGRARTGQGKTLAFVLPILESITNGHAKESR 176
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
KTGYGR PSVLVLLPTRELA QV +DF VYG ++GLTSCCLYGGA YH QE LK+G+D+
Sbjct: 177 KTGYGRPPSVLVLLPTRELASQVFDDFKVYGESLGLTSCCLYGGASYHPQEMSLKRGVDI 236
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+KDHIERGNI+LS LKFRVLDEADEMLRMGFVEDVELILGKVED +KVQTLLF
Sbjct: 237 VVGTPGRVKDHIERGNINLSYLKFRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLF 296
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SATLP WVK IS++FLK+ KKTIDLVGNEKMKASTNVRHI+LPCS+SA QVIPDIIRCY
Sbjct: 297 SATLPEWVKQISSRFLKASKKTIDLVGNEKMKASTNVRHIILPCSASAIPQVIPDIIRCY 356
Query: 361 SSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
SSGGRTIIFTE +ESA++LA LL GARALHG+IQQSQREVTL+GFRSGKF+TLVATNVAA
Sbjct: 357 SSGGRTIIFTEKRESANELAGLLHGARALHGEIQQSQREVTLSGFRSGKFLTLVATNVAA 416
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA--------------------------- 453
RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA
Sbjct: 417 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERESGVK 476
Query: 454 ----------------GVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAK 497
G AAE ITQVSDS++PAFKSAAE+LLN+SGLSA ELLAKALA
Sbjct: 477 FEHITAPQPADIAQAVGAVAAEKITQVSDSIVPAFKSAAEDLLNSSGLSAVELLAKALAN 536
Query: 498 AVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD 557
A GYTEIKSRSLLSS+E+HVT++LEAG+PIYTPSFAFGVLRRFLPE+KVE VKGM LTAD
Sbjct: 537 AAGYTEIKSRSLLSSMENHVTLLLEAGRPIYTPSFAFGVLRRFLPEDKVESVKGMTLTAD 596
Query: 558 GNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQS 600
G GAVFDV AD+D F +G DNAANVSLE+LK LPPLQE++QS
Sbjct: 597 GKGAVFDVAAADIDTFLAGQDNAANVSLEILKALPPLQEKDQS 639
>gi|7211427|gb|AAF40306.1|AF156667_1 RNA helicase [Vigna radiata]
Length = 713
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/582 (74%), Positives = 481/582 (82%), Gaps = 47/582 (8%)
Query: 66 ETSSELGEPVNLKSEKEKKKKKK----AKVEPEAGVEEQERGESEHPNAVSRFRISVPLR 121
+TSSEL EP + + + KKKKKK ++ +P E++ + E PNAVS+ RIS PLR
Sbjct: 82 DTSSELVEPESSREDDHKKKKKKKKAKSEEQPLVMEAEEKEEKKEDPNAVSKLRISEPLR 141
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
KLK KGIESLFPIQAMTFD+VLDGSDLVGRARTGQGKTLAFVLPILESL NGPTK+S+K
Sbjct: 142 LKLKEKGIESLFPIQAMTFDLVLDGSDLVGRARTGQGKTLAFVLPILESLINGPTKSSRK 201
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
TGYGR PSVLVLLPTRELA +VH DF+VYGGA+GL+SCCLYGGAPY+ QE KL++G+D+V
Sbjct: 202 TGYGRTPSVLVLLPTRELACRVHADFEVYGGAMGLSSCCLYGGAPYNTQEIKLRRGVDIV 261
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
IGTPGR+KDHIERGNIDLS LKFRVLDEADEMLRMGFVEDVELILGKVE+ NKVQTLLFS
Sbjct: 262 IGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVNKVQTLLFS 321
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
ATLP WVKHI+ +FLK DKKT DLVGN KMKASTNVRHIVLPCS+ ARSQ+IPDIIRCYS
Sbjct: 322 ATLPDWVKHIAAQFLKPDKKTADLVGNTKMKASTNVRHIVLPCSAPARSQLIPDIIRCYS 381
Query: 362 SGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
SGGRTIIFTETKESASQLA LLPGARALHGDIQQ+QREVTL GFRSGKFMTLVATNVAAR
Sbjct: 382 SGGRTIIFTETKESASQLAGLLPGARALHGDIQQAQREVTLFGFRSGKFMTLVATNVAAR 441
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV-------------------------- 455
GLDINDVQLIIQCE PR+VE+YIHRSGRTGRAG
Sbjct: 442 GLDINDVQLIIQCEFPREVESYIHRSGRTGRAGNTGVAGTLYDPKRSNISKIERESGVKF 501
Query: 456 -----------------EAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKA 498
EAAE ITQVSDSVIPAFK AEELL +SGL+ ELLAKALAKA
Sbjct: 502 EHISAPRPDDIAKAVGGEAAEMITQVSDSVIPAFKETAEELLKSSGLTVVELLAKALAKA 561
Query: 499 VGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG 558
VGYTEIK RSLL+S+E++VT++LE GKPI+TPSFA+G+LRRFLPEEKVE VKG++LTADG
Sbjct: 562 VGYTEIKQRSLLTSMENYVTLLLEIGKPIFTPSFAYGILRRFLPEEKVEAVKGLSLTADG 621
Query: 559 NGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQS 600
NGAVFDVP DL+ + SG +NAANVSLEVLK LP LQ+R+QS
Sbjct: 622 NGAVFDVPAEDLNTYLSGQENAANVSLEVLKALPRLQQRDQS 663
>gi|356575902|ref|XP_003556075.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
Length = 693
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/660 (66%), Positives = 504/660 (76%), Gaps = 71/660 (10%)
Query: 1 MPSIALFDGKEVKDEKKMNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEE 60
MPS++L D K K K +LT+ D KK +KKRK S++E+
Sbjct: 1 MPSLSLSDPDTPKPIAKKKTKTQ---------SLTDPDLDGVSGKK---TKKRKASDLEQ 48
Query: 61 E---------EERSETSSELGEP-------VNLKSEKEKKKKKKAKVEPEAGVEEQERGE 104
E + ETSS+L +P N +K+KKK K++ + + V E +
Sbjct: 49 EAMPPAAYNNDGDDETSSDLVQPEPASREDDNKNKKKKKKKVVKSEEKEQPLVTEANGEK 108
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
E PNA+S FRIS PLR+KLK KGIESLFPIQAMTFD VLDGSDLVGRARTGQGKTLAFV
Sbjct: 109 KEDPNALSNFRISEPLRQKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFV 168
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
LPILESL NGPTKAS+KTG+GR PSVLVLLPTRELA QVH DFDVYGGA+GL+SCCLYGG
Sbjct: 169 LPILESLINGPTKASRKTGFGRTPSVLVLLPTRELACQVHADFDVYGGAMGLSSCCLYGG 228
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
APY QE KL++G+D+VIGTPGR+KDHIE+GNIDLS LKFRVLDEADEMLRMGFVEDVE+
Sbjct: 229 APYQGQEIKLRRGVDIVIGTPGRVKDHIEKGNIDLSQLKFRVLDEADEMLRMGFVEDVEM 288
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
ILGKVE+ NKVQTLLFSATLP WVK I+ +FLK DKKT DLVGN KMKAS NVRHIVLPC
Sbjct: 289 ILGKVENVNKVQTLLFSATLPDWVKQIAARFLKPDKKTADLVGNTKMKASINVRHIVLPC 348
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAG 404
+SSAR+Q+IPDIIRCYSSGGRTI+FTETKESASQLA +L GA+ALHGDIQQS REVTL+G
Sbjct: 349 TSSARAQLIPDIIRCYSSGGRTIVFTETKESASQLAGILTGAKALHGDIQQSTREVTLSG 408
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV--------- 455
FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG
Sbjct: 409 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 468
Query: 456 ----------------------------------EAAETITQVSDSVIPAFKSAAEELLN 481
EAAE I QVSDSV+PAFKSAAE+LLN
Sbjct: 469 PKRSNISRIERESGVKFEHVSAPQPDDIAKAVSGEAAEMIIQVSDSVVPAFKSAAEDLLN 528
Query: 482 NSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFL 541
NSGL ELLAKALAKAVGYTE+K RSLL+S+E++VT++LE GKPIYT SFA+GVLRRFL
Sbjct: 529 NSGLPVIELLAKALAKAVGYTEVKQRSLLTSMENYVTLLLETGKPIYTQSFAYGVLRRFL 588
Query: 542 PEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQSR 601
PEEKVE VKG+++TADGNG VFDV DLD++ +G +NA+NVSLE++K LP LQ+ EQ +
Sbjct: 589 PEEKVEAVKGLSITADGNGVVFDVAAKDLDIYLNGQENASNVSLEIVKTLPQLQQMEQHQ 648
>gi|356535937|ref|XP_003536498.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
Length = 697
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/668 (66%), Positives = 504/668 (75%), Gaps = 72/668 (10%)
Query: 1 MPSIALFDGKEVKDEKKMNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEE 60
MPS++L + + NKK + +LT+ D KK +KKRK S++ E
Sbjct: 1 MPSLSLSETDTTTPKPISNKK------KPKTQSLTDPDLDGVSGKK---TKKRKASDLLE 51
Query: 61 EEER----------SETSSELGEPVNLKSEKEKKKKKKAKVEPEAG--------VEEQER 102
E ETSS+L EP E + + KKK K + V E +
Sbjct: 52 PEAMPAAYSYNNGDDETSSDLVEPEPASREDDSQNKKKKKKKVVKSEEKEQPLLVTEPKE 111
Query: 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
+ + PNA+S FRIS PLREKLK KGIESLFPIQAMTFD VLDGSDLVGRARTGQGKTLA
Sbjct: 112 EKKDDPNAISNFRISEPLREKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTLA 171
Query: 163 FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
FVLPILESL NGP K+++KTGYGR PSVLVLLPTRELA QVH DF+VYGGA+GL+SCCLY
Sbjct: 172 FVLPILESLINGPAKSARKTGYGRTPSVLVLLPTRELACQVHADFEVYGGAMGLSSCCLY 231
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GGAPY QE KL++G+D+VIGTPGR+KDHIE+GNIDLS LKFRVLDEADEMLRMGFVEDV
Sbjct: 232 GGAPYQGQELKLRRGVDIVIGTPGRVKDHIEKGNIDLSQLKFRVLDEADEMLRMGFVEDV 291
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E+ILGKVE+ NKVQTLLFSATLP WVK I+ KFLK DKKT DLVGN KMKASTNVRHIVL
Sbjct: 292 EMILGKVENVNKVQTLLFSATLPDWVKQIALKFLKPDKKTADLVGNTKMKASTNVRHIVL 351
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTL 402
PC+SSAR+Q+IPDIIRCYSSGGRTI+FTETKE ASQLA +L GA+ALHGDIQQS REVTL
Sbjct: 352 PCTSSARAQLIPDIIRCYSSGGRTIVFTETKECASQLAGILNGAKALHGDIQQSTREVTL 411
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV------- 455
+GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG
Sbjct: 412 SGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 471
Query: 456 ------------------------------------EAAETITQVSDSVIPAFKSAAEEL 479
EAAE I QVSDSV+PAFKSAAEEL
Sbjct: 472 YDPKRSNIPRIERESGVKFEHVSAPQPDDIAKAVSGEAAEMIIQVSDSVVPAFKSAAEEL 531
Query: 480 LNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRR 539
LN+SGL ELLAKALAKAVGYT++K RSLL+S+E++VT+VLE GKPIYT S+ + +LRR
Sbjct: 532 LNSSGLPVIELLAKALAKAVGYTDVKQRSLLTSMENYVTLVLETGKPIYTQSYGYSILRR 591
Query: 540 FLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQERE- 598
FLPEEKVE VKG++LTADGNG VFDVP DLD++ +G +NA+NV LEV+K LP LQ++E
Sbjct: 592 FLPEEKVEAVKGLSLTADGNGVVFDVPAKDLDIYLNGQENASNVCLEVVKTLPQLQQKEP 651
Query: 599 QSR-GRFG 605
QSR GRFG
Sbjct: 652 QSRGGRFG 659
>gi|224122544|ref|XP_002318863.1| predicted protein [Populus trichocarpa]
gi|222859536|gb|EEE97083.1| predicted protein [Populus trichocarpa]
Length = 652
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/581 (71%), Positives = 473/581 (81%), Gaps = 50/581 (8%)
Query: 59 EEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISV 118
+++EERSETSSELGEPVNLK + +K K + + E++E ++E PNAV+RFRIS
Sbjct: 20 DDDEERSETSSELGEPVNLKKKSKKAKVVEEE-------EDEEEVKAEDPNAVTRFRISE 72
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
PLRE LK +GIE+LFPIQA TF+ +L+G DLVGRARTGQGKTLAFVLPILESL NGP KA
Sbjct: 73 PLREALKKRGIEALFPIQARTFEDILNGCDLVGRARTGQGKTLAFVLPILESLVNGPAKA 132
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
S+KTGYGR PSVLVLLPTRELA QV EDF VYGGAVGL SCC+YGGA Y QEF LK+G+
Sbjct: 133 SRKTGYGRPPSVLVLLPTRELATQVFEDFKVYGGAVGLNSCCVYGGASYQPQEFALKRGV 192
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
D+V+GTPGRIKDHIE+GNIDLS LKFRVLDE+DEMLRMGFVEDVELILGKVED KVQTL
Sbjct: 193 DIVVGTPGRIKDHIEKGNIDLSLLKFRVLDESDEMLRMGFVEDVELILGKVEDVRKVQTL 252
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSATLP WVK+IS++FLK KKTIDLVGNEKMKASTNVRHIVLPCS++A QVIPD+I
Sbjct: 253 LFSATLPDWVKNISSRFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTAAMPQVIPDVIS 312
Query: 359 CYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
CY SGGRTIIFTE +ESA++LA LLPGARALHG+IQQS+REVTL+GFRSGKF+TLVATNV
Sbjct: 313 CYGSGGRTIIFTEKRESANELAGLLPGARALHGEIQQSKREVTLSGFRSGKFLTLVATNV 372
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR-------------------------- 452
AARGLDINDVQLIIQCEPP DVEAYIHRSGRTGR
Sbjct: 373 AARGLDINDVQLIIQCEPPNDVEAYIHRSGRTGRAGNSGVAVMLYDPRRSNISKIQRESG 432
Query: 453 -----------------AGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKAL 495
AGV AAETITQVSDSVIPAFKSAAE LL+ SGLSA ELLAKAL
Sbjct: 433 VKFEHITAPRAEDIAKAAGVGAAETITQVSDSVIPAFKSAAENLLSTSGLSAVELLAKAL 492
Query: 496 AKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALT 555
AKA GYTEIKSRSLL+S+++HVT++LE+GKPIYTPSFAF V+RR LPE+KVE V GM+LT
Sbjct: 493 AKATGYTEIKSRSLLTSMDNHVTLLLESGKPIYTPSFAFSVMRRILPEDKVESVTGMSLT 552
Query: 556 ADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 596
ADGNGAVFDV D+D F + +NAA V++EV+K LP LQE
Sbjct: 553 ADGNGAVFDVKKEDVDTFLAAQENAAGVNIEVVKALPSLQE 593
>gi|296084100|emb|CBI24488.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/506 (79%), Positives = 431/506 (85%), Gaps = 43/506 (8%)
Query: 138 MTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197
MTFD +LDGSDLVGRARTGQGKTLAFVLPILESL NGP + S+KTGYGR P VLVLLPTR
Sbjct: 1 MTFDTILDGSDLVGRARTGQGKTLAFVLPILESLINGPNRGSRKTGYGRPPCVLVLLPTR 60
Query: 198 ELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI 257
ELA QV+ DFDVYGGA+GLTSCCLYGGAPY AQE KLK+G+D+V+GTPGRIKDHIERGNI
Sbjct: 61 ELATQVYADFDVYGGAIGLTSCCLYGGAPYQAQEIKLKRGVDIVVGTPGRIKDHIERGNI 120
Query: 258 DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLK 317
D SSLKFRVLDEADEMLRMGFVEDVELILGKVED +KVQTLLFSATLP WVK IS++FLK
Sbjct: 121 DFSSLKFRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPGWVKEISSRFLK 180
Query: 318 SDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESAS 377
KT DLVGNEKMKASTNVRHIVLPCSSSARSQVIPD+IRCYSSGGRTIIFTETK+SAS
Sbjct: 181 PTLKTADLVGNEKMKASTNVRHIVLPCSSSARSQVIPDVIRCYSSGGRTIIFTETKDSAS 240
Query: 378 QLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+LA LLPGARALHGDIQQSQREVTL+GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP
Sbjct: 241 ELAGLLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 300
Query: 438 RDVEAYIHRSGRTGR-------------------------------------------AG 454
RDVEAYIHRSGRTGR AG
Sbjct: 301 RDVEAYIHRSGRTGRAGNSGVAVMLFDPRRSNISKIERESGVKFEHVSAPQPADIAKSAG 360
Query: 455 VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLE 514
VEAA TITQVSDSVIPAFKSAAEELLN SGLSA ELLAKALAKA GYTEIKSRSLL+SL+
Sbjct: 361 VEAAGTITQVSDSVIPAFKSAAEELLNTSGLSAVELLAKALAKASGYTEIKSRSLLASLD 420
Query: 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFR 574
+HVTV+LEAGKPIYTPSFA+GVLRRFLPE+KV+ +KG+ALTADGNGAVFDV DLD F
Sbjct: 421 NHVTVLLEAGKPIYTPSFAYGVLRRFLPEDKVDSIKGLALTADGNGAVFDVATEDLDAFL 480
Query: 575 SGADNAANVSLEVLKQLPPLQEREQS 600
+G +NAANVSLEVLK LP LQER+QS
Sbjct: 481 AGQENAANVSLEVLKALPRLQERDQS 506
>gi|224136846|ref|XP_002322430.1| predicted protein [Populus trichocarpa]
gi|222869426|gb|EEF06557.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/535 (75%), Positives = 442/535 (82%), Gaps = 43/535 (8%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNAV+RFRIS PLRE LK +GIE+LFPIQA TF+ +L+G DLVGRARTGQGKTLAFVLPI
Sbjct: 78 PNAVTRFRISEPLREVLKKRGIEALFPIQARTFEDILNGGDLVGRARTGQGKTLAFVLPI 137
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS+KTGYGR PSVLVLLPTRELA QV +DF VYGGA+GL SCC+YGGA Y
Sbjct: 138 LESLVNGLAKASRKTGYGRPPSVLVLLPTRELATQVFDDFKVYGGAMGLDSCCVYGGASY 197
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QEF LK+G+DVV+GTPGRIKDHIE+GNIDLS LKFRVLDEADEMLRMGFVEDVELILG
Sbjct: 198 QPQEFALKRGVDVVVGTPGRIKDHIEKGNIDLSLLKFRVLDEADEMLRMGFVEDVELILG 257
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KV+D NKVQTLLFSATLP WVK IS+KFLK KKTIDLVGNEKMKASTNVRHIVLPCS+S
Sbjct: 258 KVKDVNKVQTLLFSATLPGWVKQISSKFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTS 317
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
A QVIPDIIRCY+SGGRTIIFTE +ESA++L+ LLPGARALHG+IQQSQREVTL+GFRS
Sbjct: 318 AIPQVIPDIIRCYASGGRTIIFTEKRESANELSGLLPGARALHGEIQQSQREVTLSGFRS 377
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA-------------- 453
GKF+TLVATNVAARGLDINDVQLIIQCEPP DVEAYIHRSGRTGRA
Sbjct: 378 GKFLTLVATNVAARGLDINDVQLIIQCEPPNDVEAYIHRSGRTGRAGNSGVAVMLYDPRR 437
Query: 454 -----------------------------GVEAAETITQVSDSVIPAFKSAAEELLNNSG 484
GVEAAETI QVSDSVIPAFKSAAE+LLN SG
Sbjct: 438 SNISKIQRESGVKFEHITAPKAEDIAKAVGVEAAETIIQVSDSVIPAFKSAAEDLLNTSG 497
Query: 485 LSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEE 544
LSA ELLAKALAKA GYTEIKSRSLLSS+E+HVT++LE+GKPIYTPSFAF VLRR LPE+
Sbjct: 498 LSAVELLAKALAKATGYTEIKSRSLLSSMENHVTLLLESGKPIYTPSFAFSVLRRILPED 557
Query: 545 KVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQ 599
KVE V GM LT DGNGAVFDV D+D F + +N A V++EV+K LP LQEREQ
Sbjct: 558 KVESVTGMTLTTDGNGAVFDVKKEDVDAFLAAQENGAGVNIEVVKTLPSLQEREQ 612
>gi|449530205|ref|XP_004172086.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Cucumis
sativus]
Length = 696
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/588 (68%), Positives = 465/588 (79%), Gaps = 44/588 (7%)
Query: 57 EIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRI 116
E+ ++ +RSETSSELGEPVN +S+ K+KK K + ++ E+E+PNAV++FRI
Sbjct: 53 EVADDGDRSETSSELGEPVNSRSKSGKEKKSSKKAKVVDSEDDDVEKEAENPNAVTQFRI 112
Query: 117 SVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPT 176
S PL+ KL+ KGI SLFPIQA TFD V DGSDLVGRARTGQGKTLAFVLPILESL NGP
Sbjct: 113 SEPLKAKLREKGITSLFPIQATTFDTVYDGSDLVGRARTGQGKTLAFVLPILESLVNGPY 172
Query: 177 KASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
K+S+ TGYGR+PSV+VLLPTRELA QV EDF YG +GL SCCL GG Y QE LK+
Sbjct: 173 KSSRVTGYGRSPSVIVLLPTRELADQVFEDFKFYGRTLGLDSCCLCGGLQYGPQEIALKR 232
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G+D+V+GTPGR+KDHI R NIDL SLKFRVLDEADEML MGFV+DVE ILGKV D NKVQ
Sbjct: 233 GVDIVVGTPGRVKDHINRNNIDLRSLKFRVLDEADEMLNMGFVDDVEFILGKVADVNKVQ 292
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
TLLFSATLP WVK+I+++FLK+ KKT+DLVGNEKMKAS +VRHIV+PCS + RS++IPDI
Sbjct: 293 TLLFSATLPDWVKNITSRFLKASKKTVDLVGNEKMKASKDVRHIVIPCSDTERSRLIPDI 352
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
IRCYSSGGRTIIFTETKESAS+LA LLPGAR LHGDIQQSQR VT++GFRSGKF+ LVAT
Sbjct: 353 IRCYSSGGRTIIFTETKESASELAGLLPGARPLHGDIQQSQRSVTISGFRSGKFLILVAT 412
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR------------------------ 452
NVAARGLDINDVQLIIQCE P+D+EAYIHRSGRTGR
Sbjct: 413 NVAARGLDINDVQLIIQCEAPKDIEAYIHRSGRTGRAGNTGVAVTLYDPRKSGRIARIER 472
Query: 453 --------------------AGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLA 492
AG AAE++TQVSDSVIP FKSAAEE++N+S LSA ELLA
Sbjct: 473 DSGVKFEHLSAPQPIDIARSAGASAAESVTQVSDSVIPPFKSAAEEMVNSSTLSAVELLA 532
Query: 493 KALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGM 552
KALAK GYTEIKSRSLL+S+E++VT++LE GKP+Y+PSFA+ +LRRFLPEEKVE VKGM
Sbjct: 533 KALAKLSGYTEIKSRSLLTSMENYVTLILEPGKPMYSPSFAYSILRRFLPEEKVESVKGM 592
Query: 553 ALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQS 600
+LTADG+ AVFDV DLD F +G NAA+VS+EVLK LP LQ+REQS
Sbjct: 593 SLTADGSSAVFDVQTEDLDAFLTGQANAADVSIEVLKSLPKLQDREQS 640
>gi|449451928|ref|XP_004143712.1| PREDICTED: uncharacterized protein LOC101209696 [Cucumis sativus]
Length = 1247
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/588 (68%), Positives = 465/588 (79%), Gaps = 44/588 (7%)
Query: 57 EIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRI 116
E+ ++ +RSETSSELGEPVN +S+ K+KK K + ++ E+E+PNAV++FRI
Sbjct: 604 EVADDGDRSETSSELGEPVNSRSKSGKEKKSSKKAKVVDSEDDDVEKEAENPNAVTQFRI 663
Query: 117 SVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPT 176
S PL+ KL+ KGI SLFPIQA TFD V DGSDLVGRARTGQGKTLAFVLPILESL NGP
Sbjct: 664 SEPLKAKLREKGITSLFPIQATTFDTVYDGSDLVGRARTGQGKTLAFVLPILESLVNGPY 723
Query: 177 KASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
K+S+ TGYGR+PSV+VLLPTRELA QV EDF YG +GL SCCL GG Y QE LK+
Sbjct: 724 KSSRVTGYGRSPSVIVLLPTRELADQVFEDFKFYGRTLGLDSCCLCGGLQYGPQEIALKR 783
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G+D+V+GTPGR+KDHI R NIDL SLKFRVLDEADEML MGFV+DVE ILGKV D NKVQ
Sbjct: 784 GVDIVVGTPGRVKDHINRNNIDLRSLKFRVLDEADEMLNMGFVDDVEFILGKVADVNKVQ 843
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
TLLFSATLP WVK+I+++FLK+ KKT+DLVGNEKMKAS +VRHIV+PCS + RS++IPDI
Sbjct: 844 TLLFSATLPDWVKNITSRFLKASKKTVDLVGNEKMKASKDVRHIVIPCSDTERSRLIPDI 903
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
IRCYSSGGRTIIFTETKESAS+LA LLPGAR LHGDIQQSQR VT++GFRSGKF+ LVAT
Sbjct: 904 IRCYSSGGRTIIFTETKESASELAGLLPGARPLHGDIQQSQRSVTISGFRSGKFLILVAT 963
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR------------------------ 452
NVAARGLDINDVQLIIQCE P+D+EAYIHRSGRTGR
Sbjct: 964 NVAARGLDINDVQLIIQCEAPKDIEAYIHRSGRTGRAGNTGVAVTLYDPRKSGRIARIER 1023
Query: 453 --------------------AGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLA 492
AG AAE++TQVSDSVIP FKSAAEE++N+S LSA ELLA
Sbjct: 1024 DSGVKFEHLSAPQPIDIARSAGASAAESVTQVSDSVIPPFKSAAEEMVNSSTLSAVELLA 1083
Query: 493 KALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGM 552
KALAK GYTEIKSRSLL+S+E++VT++LE GKP+Y+PSFA+ +LRRFLPEEKVE VKGM
Sbjct: 1084 KALAKLSGYTEIKSRSLLTSMENYVTLILEPGKPMYSPSFAYSILRRFLPEEKVESVKGM 1143
Query: 553 ALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQS 600
+LTADG+ AVFDV DLD F +G NAA+VS+EVLK LP LQ+REQS
Sbjct: 1144 SLTADGSSAVFDVQTEDLDAFLTGQANAADVSIEVLKSLPKLQDREQS 1191
>gi|357444227|ref|XP_003592391.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355481439|gb|AES62642.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 641
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/553 (71%), Positives = 444/553 (80%), Gaps = 59/553 (10%)
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
E PN +S+F+IS PLREKLK KGIESLFPIQAMTFD++L G DLVGRARTGQGKTLAFVL
Sbjct: 40 EDPNGISKFKISEPLREKLKEKGIESLFPIQAMTFDIILQGCDLVGRARTGQGKTLAFVL 99
Query: 166 PILESLTNGPTKA--------------SKKTGYG--RAPSVLVLLPTRELAKQVHEDFDV 209
PILES+TNG K S+K GYG PSVLVLLPTRELA QV+ DF+V
Sbjct: 100 PILESVTNGKAKETNAKTKETNGNARESRKGGYGGPPKPSVLVLLPTRELACQVNADFEV 159
Query: 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269
YGGA+GLTSCCLYGGAPY AQE KL++G+D+VIGTPGRIKDHI RG+IDLS LKFRVLDE
Sbjct: 160 YGGAMGLTSCCLYGGAPYKAQEIKLERGVDIVIGTPGRIKDHIVRGSIDLSQLKFRVLDE 219
Query: 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE 329
ADEMLRMGFVEDVELILGKV++ ++VQTLLFSATLP WVK+I+ +FLK DK+T DLVGN
Sbjct: 220 ADEMLRMGFVEDVELILGKVKNVDQVQTLLFSATLPEWVKNIAKRFLKEDKQTADLVGNT 279
Query: 330 KMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARAL 389
KMKAST+VRH +LPC+ +ARSQ+IPDIIRCYSS GRTIIFTETKESASQLA+LLPGARAL
Sbjct: 280 KMKASTSVRHYILPCTGAARSQLIPDIIRCYSSEGRTIIFTETKESASQLAELLPGARAL 339
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGDIQQ+QREVTL+GFR GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR
Sbjct: 340 HGDIQQAQREVTLSGFRYGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 399
Query: 450 TGRAGV-------------------------------------------EAAETITQVSD 466
TGRAG EAAE I QVSD
Sbjct: 400 TGRAGNTGVAVMLYDPRRSNIPKIERESGVKFEHISAPQANDIAKAVGREAAEMIMQVSD 459
Query: 467 SVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKP 526
SVIPAFKSAAEELLNNSGLS +L AKALAKAVGYTEIK RSLLSS+E++VT++LE KP
Sbjct: 460 SVIPAFKSAAEELLNNSGLSVVDLFAKALAKAVGYTEIKKRSLLSSMENYVTLLLENEKP 519
Query: 527 IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLE 586
I+TP+FA+ +LRRFLPEEKVE VKG+ +TADGNG VFDV DLD + +G +N ++V LE
Sbjct: 520 IFTPTFAYKILRRFLPEEKVEAVKGLTITADGNGVVFDVAAEDLDTYLAGKENVSDVRLE 579
Query: 587 VLKQLPPLQEREQ 599
VLK+LP LQ+R+Q
Sbjct: 580 VLKELPRLQQRDQ 592
>gi|15241726|ref|NP_201025.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
gi|108861902|sp|Q39189.2|RH7_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|8809632|dbj|BAA97183.1| RNA helicase [Arabidopsis thaliana]
gi|15810145|gb|AAL07216.1| putative RNA helicase [Arabidopsis thaliana]
gi|30793911|gb|AAP40408.1| putative DEAD/DEAH box RNA helicase PRH75 [Arabidopsis thaliana]
gi|332010196|gb|AED97579.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
Length = 671
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/542 (68%), Positives = 437/542 (80%), Gaps = 44/542 (8%)
Query: 101 ERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
E E ++PNAVS+FRIS PLREKLK+ GIE+LFPIQA TFDMVLDG+DLVGRARTGQGKT
Sbjct: 88 EDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKT 147
Query: 161 LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220
LAFVLPILESL NGP K+ +K GYGR+PSVLVLLPTRELAKQV DFD YGG++GL+SCC
Sbjct: 148 LAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCC 207
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
LYGG Y QE KLK+G+D+V+GTPGRIKDHIER N+D S L+FRVLDEADEMLRMGFVE
Sbjct: 208 LYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVE 267
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVELILGKVED+ KVQTLLFSATLPSWVK+IS +FLK D+KTIDLVGN+KMKAS +VRHI
Sbjct: 268 DVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHI 327
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREV 400
+PC+ +A +++IPDII CYSSGG+TIIF ETK S+L+ LL G+RALHG+I QSQREV
Sbjct: 328 AIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGSRALHGEIPQSQREV 387
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA------- 453
TLAGFR+GKF TLVATNVAARGLDINDVQLIIQCEPPR+VEAYIHRSGRTGRA
Sbjct: 388 TLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAV 447
Query: 454 ------------------------------------GVEAAETITQVSDSVIPAFKSAAE 477
G+EAAE + QV DSV+PAF AA+
Sbjct: 448 TLYDSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAFLEAAK 507
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
ELL SGLSA LLAKALAK G+TEIK RSLL+S+E++VT+ LEAGKPIY+PSF +G+L
Sbjct: 508 ELLETSGLSAEVLLAKALAKTAGFTEIKKRSLLTSMENYVTLHLEAGKPIYSPSFVYGLL 567
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAA-NVSLEVLKQLPPLQE 596
RR LP++KVE+++G++LTAD GAVFDV +DLDLF +GA +A ++SLEV+K +P LQE
Sbjct: 568 RRVLPDDKVEMIEGLSLTADKTGAVFDVKQSDLDLFIAGAQKSAGSMSLEVVKVMPKLQE 627
Query: 597 RE 598
RE
Sbjct: 628 RE 629
>gi|14517482|gb|AAK62631.1| AT5g62190/mmi9_10 [Arabidopsis thaliana]
Length = 671
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/542 (68%), Positives = 436/542 (80%), Gaps = 44/542 (8%)
Query: 101 ERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
E E ++PNAVS+FRI PLREKLK+ GIE+LFPIQA TFDMVLDG+DLVGRARTGQGKT
Sbjct: 88 EDVEVDNPNAVSKFRIPAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKT 147
Query: 161 LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220
LAFVLPILESL NGP K+ +K GYGR+PSVLVLLPTRELAKQV DFD YGG++GL+SCC
Sbjct: 148 LAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDEYGGSLGLSSCC 207
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
LYGG Y QE KLK+G+D+V+GTPGRIKDHIER N+D S L+FRVLDEADEMLRMGFVE
Sbjct: 208 LYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVE 267
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVELILGKVED+ KVQTLLFSATLPSWVK+IS +FLK D+KTIDLVGN+KMKAS +VRHI
Sbjct: 268 DVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHI 327
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREV 400
+PC+ +A +++IPDII CYSSGG+TIIF ETK S+L+ LL G+RALHG+I QSQREV
Sbjct: 328 AIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGSRALHGEIPQSQREV 387
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA------- 453
TLAGFR+GKF TLVATNVAARGLDINDVQLIIQCEPPR+VEAYIHRSGRTGRA
Sbjct: 388 TLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAV 447
Query: 454 ------------------------------------GVEAAETITQVSDSVIPAFKSAAE 477
G+EAAE + QV DSV+PAF AA+
Sbjct: 448 TLYDSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAFLEAAK 507
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
ELL SGLSA LLAKALAK G+TEIK RSLL+S+E++VT+ LEAGKPIY+PSF +G+L
Sbjct: 508 ELLETSGLSAEVLLAKALAKTAGFTEIKKRSLLTSMENYVTLHLEAGKPIYSPSFVYGLL 567
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAA-NVSLEVLKQLPPLQE 596
RR LP++KVE+++G++LTAD GAVFDV +DLDLF +GA +A ++SLEV+K +P LQE
Sbjct: 568 RRVLPDDKVEMIEGLSLTADKTGAVFDVKQSDLDLFIAGAQKSAGSMSLEVVKVMPKLQE 627
Query: 597 RE 598
RE
Sbjct: 628 RE 629
>gi|1488521|emb|CAA68194.1| RNA helicase [Arabidopsis thaliana]
Length = 671
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/542 (68%), Positives = 435/542 (80%), Gaps = 44/542 (8%)
Query: 101 ERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
E E ++PNAVS+FRIS PLREKLK+ GIE+LFPIQA TFDMVLDG+DLVGRARTGQGKT
Sbjct: 88 EDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKT 147
Query: 161 LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220
LAFVLPILESL NGP K+ +K GYGR+PSVLVLLPTRELAKQV DFD YGG++GL+SCC
Sbjct: 148 LAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCC 207
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
LYGG QE KLK+G+D+V+GTPGRIKDHIER N+D S KFRVLDEADEMLRMGFVE
Sbjct: 208 LYGGDSIPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYFKFRVLDEADEMLRMGFVE 267
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVELILGKVED+ KVQTLLFSATLPSWVK+IS +FLK D+KTIDLVGN+KMKAS +VRHI
Sbjct: 268 DVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHI 327
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREV 400
+PC+ +A +++IPDII CYSSGG+TIIF ETK S+L+ LL G+RALHG+I QSQREV
Sbjct: 328 AIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGSRALHGEIPQSQREV 387
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA------- 453
TLAGFR+GKF TLVATNVAARGLDINDVQLIIQCEPPR+VEAYIHRSGRTGRA
Sbjct: 388 TLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVPV 447
Query: 454 ------------------------------------GVEAAETITQVSDSVIPAFKSAAE 477
G+EAAE + QV DSV+PAF AA+
Sbjct: 448 TLYDSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAFLEAAK 507
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
ELL SGLSA LLAKALAK G+TEIK RSLL+S+E++VT+ LEAGKPIY+PSF +G+L
Sbjct: 508 ELLETSGLSAEVLLAKALAKTAGFTEIKKRSLLTSMENYVTLHLEAGKPIYSPSFVYGLL 567
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAA-NVSLEVLKQLPPLQE 596
RR LP++KVE+++G++LTAD GAVFDV +DLDLF +GA +A ++SLEV+K +P LQE
Sbjct: 568 RRVLPDDKVEMIEGLSLTADKTGAVFDVKQSDLDLFIAGAQKSAGSMSLEVVKVMPKLQE 627
Query: 597 RE 598
RE
Sbjct: 628 RE 629
>gi|297797185|ref|XP_002866477.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
lyrata]
gi|297312312|gb|EFH42736.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
lyrata]
Length = 669
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/555 (67%), Positives = 442/555 (79%), Gaps = 48/555 (8%)
Query: 96 GVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRART 155
GVE+ E ++PNAVS FRIS PLREKLK+KGIE+LFPIQA TFDMVLDG+DLVGRART
Sbjct: 86 GVEDVE---VDNPNAVSNFRISAPLREKLKAKGIEALFPIQATTFDMVLDGADLVGRART 142
Query: 156 GQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG 215
GQGKTLAFVLPILESL NGP K +K GY RAPSVLVLLPTRELAKQV DFD YGG++G
Sbjct: 143 GQGKTLAFVLPILESLVNGPAKNKRKMGYARAPSVLVLLPTRELAKQVAADFDAYGGSLG 202
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L+SCC+YGG Y AQE KL++G+D+V+GTPGRIKDHIER NIDLS L+FRVLDEADEMLR
Sbjct: 203 LSSCCIYGGDSYTAQENKLRRGVDIVVGTPGRIKDHIERQNIDLSHLQFRVLDEADEMLR 262
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
MGFVEDVELILGKVED KVQTLLFSATLPSWVK+IS +FLK D+KTIDLVGN+KMKAS
Sbjct: 263 MGFVEDVELILGKVEDPTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASN 322
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQ 395
+VRHI +PC+ +A +++IPDII CYSSGG+TIIF E K S+L+ LL G+RALHG+I Q
Sbjct: 323 SVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAEKKNEVSELSGLLAGSRALHGEIPQ 382
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA-- 453
+QREVTLAGFR+GKF TLVATNVAARGLDINDVQLIIQCEPPR+VEAYIHRSGRTGRA
Sbjct: 383 AQREVTLAGFRNGKFSTLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGN 442
Query: 454 -----------------------------------------GVEAAETITQVSDSVIPAF 472
G+EAAE I +V DSV+PAF
Sbjct: 443 TGVAVTLYESRKSSVSRIEKEAGIKFEYISAPQPDDIARAVGMEAAENIKKVCDSVVPAF 502
Query: 473 KSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSF 532
AA+ELL +SGLSA LLAKALAK G+TEIK RSLL+S+E+HVT+ LEAGKP+Y+PS+
Sbjct: 503 LGAAKELLESSGLSAEVLLAKALAKTAGFTEIKKRSLLTSMENHVTLQLEAGKPMYSPSY 562
Query: 533 AFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLF-RSGADNAANVSLEVLKQL 591
+G+LRR LP++KVE ++G++LTAD +GAVFDV +DL LF +G +A ++SLEV+K++
Sbjct: 563 VYGLLRRVLPDDKVEQIEGLSLTADKSGAVFDVKQSDLALFLAAGQKSAGSMSLEVVKEM 622
Query: 592 PPLQEREQ-SRGRFG 605
P LQERE + R+G
Sbjct: 623 PKLQEREPLPQKRYG 637
>gi|75319612|sp|Q41382.1|RH7_SPIOL RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|1488647|emb|CAA68193.1| RNA helicase [Spinacia oleracea]
Length = 685
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/563 (66%), Positives = 440/563 (78%), Gaps = 49/563 (8%)
Query: 85 KKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL 144
K KKAKV EA VE +E PN++S FRIS PL++ L SKGI++LFPIQAMTFD V+
Sbjct: 89 KPKKAKVMEEAVVE------AEDPNSLSNFRISKPLKDVLISKGIKALFPIQAMTFDNVI 142
Query: 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204
DG DLVGRARTGQGKTLAFVLPI+ESL NG TK +++G+GR PSVLVLLPTRELA QV
Sbjct: 143 DGCDLVGRARTGQGKTLAFVLPIVESLVNGRTKDLRRSGHGRLPSVLVLLPTRELATQVL 202
Query: 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF VYGGAVGLT+C +YGGAP+H+Q L +G+D+V+GTPGR+KD +E+G + L SL F
Sbjct: 203 ADFQVYGGAVGLTACSVYGGAPFHSQISSLTRGVDIVVGTPGRVKDLLEKGVLKLGSLLF 262
Query: 265 RVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
RVLDEADEML+MGFV+DVELILGKV+ +KVQTLLFSATLPSWVK IST+FLKS KKT+D
Sbjct: 263 RVLDEADEMLKMGFVDDVELILGKVDHVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVD 322
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP 384
LV ++KMKAS +VRHIV+PCS+SAR +IPDIIRCY SGGR+IIFTETKESASQLA LL
Sbjct: 323 LVSDQKMKASISVRHIVIPCSASARPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLT 382
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
GAR LHGDIQQ+QREVTL GFR+GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE YI
Sbjct: 383 GARPLHGDIQQTQREVTLKGFRTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYI 442
Query: 445 HRSGRTGRA-------------------------------------------GVEAAETI 461
HRSGRTGRA G+EAA I
Sbjct: 443 HRSGRTGRAGNTGVAVMLYDPKRSSVTKIERESGVKFEHLSAPQPVDVAKAVGIEAAAAI 502
Query: 462 TQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVL 521
Q+SDSVIPAFK AAEELL+ SGLSA ++L+KALAKA GY++IK RSLL+ +E +VT++L
Sbjct: 503 LQISDSVIPAFKDAAEELLSTSGLSAVDILSKALAKAAGYSDIKERSLLTGMEGYVTLLL 562
Query: 522 EAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAA 581
+AG+P Y SFA+ VL+RFLP K + + G+ALTAD +GAVFDVPV DL+ F GA+NAA
Sbjct: 563 DAGRPFYGQSFAYTVLKRFLPATKADSIMGVALTADKSGAVFDVPVDDLETFLVGAENAA 622
Query: 582 NVSLEVLKQLPPLQEREQSRGRF 604
V+L+V+K LPPL+E+ Q RF
Sbjct: 623 GVNLDVVKALPPLEEKVQISRRF 645
>gi|357159473|ref|XP_003578458.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Brachypodium
distachyon]
Length = 694
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/540 (66%), Positives = 429/540 (79%), Gaps = 45/540 (8%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS PL++KLKSKGI +LFPIQA TF +VLDG DLVGRARTGQGKTLAFVLPI
Sbjct: 117 PNALANFRISEPLKQKLKSKGINALFPIQATTFGLVLDGHDLVGRARTGQGKTLAFVLPI 176
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NGP KA+++T YGR PSVLVLLPTRELA QVH DF+ YGGA GL++CC YGG+ Y
Sbjct: 177 LESLVNGPHKATRRTDYGRLPSVLVLLPTRELANQVHADFEFYGGAFGLSTCCAYGGSHY 236
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE ++KG+D+V+GTPGR+KD I +G ++L SLKFRVLDEADEML MGFV+DVELILG
Sbjct: 237 RPQEMAMRKGVDIVVGTPGRVKDFIVKGTLNLKSLKFRVLDEADEMLNMGFVDDVELILG 296
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVED KVQTLLFSATLP WVK +S +FLK+DKKT+DLVGNEKMKAS++V+H+ LPC+ +
Sbjct: 297 KVEDVTKVQTLLFSATLPEWVKKLSMRFLKADKKTVDLVGNEKMKASSSVKHLALPCNRA 356
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
ARSQ+IPDII+CYS GGRTIIFTETKESAS+L+ L+PG+RALHGDI Q+QREV +AGFRS
Sbjct: 357 ARSQIIPDIIKCYSRGGRTIIFTETKESASELSGLIPGSRALHGDIAQAQREVVIAGFRS 416
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR--------------- 452
GKF+ LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR
Sbjct: 417 GKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRY 476
Query: 453 -----------------------------AGVEAAETITQVSDSVIPAFKSAAEELLNNS 483
AG EAA+ I VSDSVIP F+ AEELL++S
Sbjct: 477 KYSVTRIERESGVKFEHISAPQPTDVAQSAGNEAADAIASVSDSVIPVFRQQAEELLSSS 536
Query: 484 GLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPE 543
+SA +LLAKALAKAVGYT+IK RSLLSS+E++ T+ L+ G+P+YTP FA L+RF+PE
Sbjct: 537 SMSAVDLLAKALAKAVGYTDIKKRSLLSSMENYTTLQLQTGRPMYTPGFALTTLKRFMPE 596
Query: 544 EKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQERE-QSRG 602
+K+ V G+ LTADG GAVFDVP A++ + G++NAA V+L+ +KQLPPLQERE QSRG
Sbjct: 597 DKLSDVHGITLTADGTGAVFDVPSAEVQDYILGSENAAMVTLDEVKQLPPLQEREQQSRG 656
>gi|125564407|gb|EAZ09787.1| hypothetical protein OsI_32075 [Oryza sativa Indica Group]
Length = 685
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/536 (66%), Positives = 422/536 (78%), Gaps = 44/536 (8%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS PLREKLKSKGI++LFPIQA TFD+VLDG DLVGRARTGQGKTLAFVLPI
Sbjct: 103 PNALANFRISEPLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPI 162
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T YGR P+VLVLLPTRELAKQVH DF YG GL++CC+YGG+ Y
Sbjct: 163 LESLVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDY 222
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
+QE ++KG+D+V+GTPGR+KD +E+G ++ SLKFRVLDEADEML MGFV+DVELILG
Sbjct: 223 RSQEMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILG 282
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVED KVQTLLFSAT+P WVK +S +FLKS KKT+DLVG+EK+KAS +VRH+ LPC+ +
Sbjct: 283 KVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRA 342
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+QVIPDIIRCYS GGRTIIFTETKESAS L+ L+ G+RALHGD+ Q+QREV LAGFRS
Sbjct: 343 ARAQVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGSRALHGDVAQAQREVILAGFRS 402
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------- 454
GKF+ LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG
Sbjct: 403 GKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRY 462
Query: 455 -------------------------------VEAAETITQVSDSVIPAFKSAAEELLNNS 483
EAAE I+ VSDSVIP F+ AE+LLN+S
Sbjct: 463 KFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFREQAEQLLNSS 522
Query: 484 GLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPE 543
G+SA +LLAKALAKAVGYT+IK RSLLSS+++H T++L G+ +Y F L+RF+PE
Sbjct: 523 GMSAVDLLAKALAKAVGYTDIKKRSLLSSMDNHTTLLLLTGRSVYAAGFVLSTLKRFMPE 582
Query: 544 EKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQ 599
E++ VKG+ +TADG GAVFDVP A+++ + GA NAA V++E +KQLPPLQEREQ
Sbjct: 583 ERLADVKGITITADGTGAVFDVPSAEVEDYIQGAQNAAMVTVEEVKQLPPLQEREQ 638
>gi|115480217|ref|NP_001063702.1| Os09g0520700 [Oryza sativa Japonica Group]
gi|75322251|sp|Q650T9.1|RH7_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|52076165|dbj|BAD46678.1| putative RNA helicase [Oryza sativa Japonica Group]
gi|113631935|dbj|BAF25616.1| Os09g0520700 [Oryza sativa Japonica Group]
Length = 696
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/536 (65%), Positives = 422/536 (78%), Gaps = 44/536 (8%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS LREKLKSKGI++LFPIQA TFD+VLDG DLVGRARTGQGKTLAFVLPI
Sbjct: 114 PNALANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPI 173
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T YGR P+VLVLLPTRELAKQVH DF YG GL++CC+YGG+ Y
Sbjct: 174 LESLVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDY 233
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
+QE ++KG+D+V+GTPGR+KD +E+G ++ SLKFRVLDEADEML MGFV+DVELILG
Sbjct: 234 RSQEMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILG 293
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVED KVQTLLFSAT+P WVK +S +FLKS KKT+DLVG+EK+KAS +VRH+ LPC+ +
Sbjct: 294 KVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRA 353
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+QVIPDIIRCYS GGRTIIFTETKESAS L+ L+ G+RALHGD+ Q+QREV LAGFRS
Sbjct: 354 ARAQVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGSRALHGDVAQAQREVILAGFRS 413
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR--------------- 452
GKF+ LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR
Sbjct: 414 GKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRY 473
Query: 453 -----------------------------AGVEAAETITQVSDSVIPAFKSAAEELLNNS 483
AG EAAE I+ VSDSVIP F+ AE+LLN+S
Sbjct: 474 KFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFREQAEQLLNSS 533
Query: 484 GLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPE 543
G+SA +LLAKALAKAVGYT+IK RSLLSS+++H T++L+ G+ +Y F L+RF+PE
Sbjct: 534 GMSAVDLLAKALAKAVGYTDIKKRSLLSSMDNHTTLLLQTGRSVYAAGFVLSTLKRFMPE 593
Query: 544 EKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQ 599
E++ VKG+ +TADG GAVFDVP A+++ + GA NAA V++E +KQLPPLQEREQ
Sbjct: 594 ERLADVKGITITADGTGAVFDVPSAEVEDYIQGAQNAAMVTVEEVKQLPPLQEREQ 649
>gi|125606362|gb|EAZ45398.1| hypothetical protein OsJ_30047 [Oryza sativa Japonica Group]
Length = 685
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/536 (65%), Positives = 422/536 (78%), Gaps = 44/536 (8%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS LREKLKSKGI++LFPIQA TFD+VLDG DLVGRARTGQGKTLAFVLPI
Sbjct: 103 PNALANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPI 162
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T YGR P+VLVLLPTRELAKQVH DF YG GL++CC+YGG+ Y
Sbjct: 163 LESLVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDY 222
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
+QE ++KG+D+V+GTPGR+KD +E+G ++ SLKFRVLDEADEML MGFV+DVELILG
Sbjct: 223 RSQEMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILG 282
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVED KVQTLLFSAT+P WVK +S +FLKS KKT+DLVG+EK+KAS +VRH+ LPC+ +
Sbjct: 283 KVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRA 342
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+QVIPDIIRCYS GGRTIIFTETKESAS L+ L+ G+RALHGD+ Q+QREV LAGFRS
Sbjct: 343 ARAQVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGSRALHGDVAQAQREVILAGFRS 402
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------- 454
GKF+ LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG
Sbjct: 403 GKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRY 462
Query: 455 -------------------------------VEAAETITQVSDSVIPAFKSAAEELLNNS 483
EAAE I+ VSDSVIP F+ AE+LLN+S
Sbjct: 463 KFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFREQAEQLLNSS 522
Query: 484 GLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPE 543
G+SA +LLAKALAKAVGYT+IK RSLLSS+++H T++L+ G+ +Y F L+RF+PE
Sbjct: 523 GMSAVDLLAKALAKAVGYTDIKKRSLLSSMDNHTTLLLQTGRSVYAAGFVLSTLKRFMPE 582
Query: 544 EKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQ 599
E++ VKG+ +TADG GAVFDVP A+++ + GA NAA V++E +KQLPPLQEREQ
Sbjct: 583 ERLADVKGITITADGTGAVFDVPSAEVEDYIQGAQNAAMVTVEEVKQLPPLQEREQ 638
>gi|110430646|gb|ABG73436.1| DEAD/DEAH box helicase family protein [Oryza brachyantha]
Length = 688
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/544 (66%), Positives = 428/544 (78%), Gaps = 45/544 (8%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS PLREKLKSKGI++LFPIQA TFD+VLDG DLVGRARTGQGKTLAFVLPI
Sbjct: 105 PNALANFRISEPLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPI 164
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS YGR PSVLVLLPTRELAKQVH DF+ YG GL+SCC+YGG+ Y
Sbjct: 165 LESLVNGKHKASG-ADYGRPPSVLVLLPTRELAKQVHTDFEFYGATFGLSSCCVYGGSEY 223
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE K++KG+D+V+GTPGR+KD +++G ++ SLKFRVLDEADEML MGFV+DVELILG
Sbjct: 224 RPQEMKIRKGVDIVVGTPGRVKDFVQKGTLNFKSLKFRVLDEADEMLNMGFVDDVELILG 283
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVED KVQTLLFSATLP WV +S +FLK KKT+DLVG+EK+KAS +VRH+ LPC+ +
Sbjct: 284 KVEDVTKVQTLLFSATLPDWVGKLSLRFLKPGKKTVDLVGDEKLKASASVRHLALPCNRA 343
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+QVIPDIIRCYS GGRTIIFTETKESAS+L+ L+ G+RALHGD+ Q+QREV LAGFRS
Sbjct: 344 ARAQVIPDIIRCYSRGGRTIIFTETKESASELSGLIAGSRALHGDVAQAQREVILAGFRS 403
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR--------------- 452
GKF+ LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR
Sbjct: 404 GKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFDPRH 463
Query: 453 -----------------------------AGVEAAETITQVSDSVIPAFKSAAEELLNNS 483
AG EAAE I VSDSVIP F+ AE+LL++S
Sbjct: 464 KFNVNRIERESGVKFEHISAPQPTDVAQSAGSEAAEAIASVSDSVIPVFREQAEQLLSSS 523
Query: 484 GLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPE 543
G+SAA+LLAKALAKAVGYT+IK RSLLSS+E+H T++L+ G+ +Y P F L+RF+PE
Sbjct: 524 GMSAADLLAKALAKAVGYTDIKKRSLLSSMENHTTLLLQTGRSVYAPGFVLSTLKRFMPE 583
Query: 544 EKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGR 603
E++ VKG+ LTADG GAVFDVP A+++ + G++NAA V++E +KQLPPLQER+QSRG
Sbjct: 584 ERLADVKGITLTADGTGAVFDVPSAEVEDYIQGSENAAMVTIEEVKQLPPLQERDQSRGS 643
Query: 604 FGGG 607
GGG
Sbjct: 644 NGGG 647
>gi|414590005|tpg|DAA40576.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 704
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/538 (65%), Positives = 425/538 (78%), Gaps = 44/538 (8%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS PLR+ L+SKGI++LFPIQA TFD+VLDGSDLVGRARTGQGKTLAFVLPI
Sbjct: 122 PNALTNFRISEPLRQSLRSKGIKALFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPI 181
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T +GR PSVLVLLPTRELA QVH DF+ YG GL++CC+YGG+PY
Sbjct: 182 LESLVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPY 241
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G+D+V+GTPGRIKD I +G ++L LKFRVLDEADEML MGFV+DVELILG
Sbjct: 242 RPQEMALRRGVDIVVGTPGRIKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILG 301
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVEDA KVQTLLFSATLP WV +S +FLK D+KT+DLVGNEK+KAS +V+H+ LPC+ +
Sbjct: 302 KVEDATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKA 361
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+Q+IPDIIRCYS GGRTIIFTETK+SAS+L+ L+PG+RALHGD+ Q+QREV LAGFRS
Sbjct: 362 ARAQLIPDIIRCYSHGGRTIIFTETKDSASELSGLIPGSRALHGDVVQAQREVILAGFRS 421
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR--------------- 452
GKF LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR
Sbjct: 422 GKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRY 481
Query: 453 -----------------------------AGVEAAETITQVSDSVIPAFKSAAEELLNNS 483
AG EAA+ I VSDSVIP F+ AE+LL++S
Sbjct: 482 KYSVSRLERESGVKFEHISAPQPTDVAQSAGSEAADAIASVSDSVIPVFRQQAEQLLSSS 541
Query: 484 GLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPE 543
LSAA+LLAKALAKAVGYT+IK RSLLSS+ED+ T+ L+ G+ +++P FAF +L+RF+PE
Sbjct: 542 TLSAADLLAKALAKAVGYTDIKKRSLLSSMEDYATLHLQTGRQMWSPGFAFTILKRFMPE 601
Query: 544 EKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQSR 601
EK+ VKG LTADG G VFDVP AD++ + ++NAA V+++ ++QLPPLQE++Q +
Sbjct: 602 EKLADVKGATLTADGTGVVFDVPAADVEDYIQASENAAQVTIDEVQQLPPLQEKQQQQ 659
>gi|414590004|tpg|DAA40575.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 671
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/535 (65%), Positives = 423/535 (79%), Gaps = 44/535 (8%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS PLR+ L+SKGI++LFPIQA TFD+VLDGSDLVGRARTGQGKTLAFVLPI
Sbjct: 122 PNALTNFRISEPLRQSLRSKGIKALFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPI 181
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T +GR PSVLVLLPTRELA QVH DF+ YG GL++CC+YGG+PY
Sbjct: 182 LESLVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPY 241
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G+D+V+GTPGRIKD I +G ++L LKFRVLDEADEML MGFV+DVELILG
Sbjct: 242 RPQEMALRRGVDIVVGTPGRIKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILG 301
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVEDA KVQTLLFSATLP WV +S +FLK D+KT+DLVGNEK+KAS +V+H+ LPC+ +
Sbjct: 302 KVEDATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKA 361
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+Q+IPDIIRCYS GGRTIIFTETK+SAS+L+ L+PG+RALHGD+ Q+QREV LAGFRS
Sbjct: 362 ARAQLIPDIIRCYSHGGRTIIFTETKDSASELSGLIPGSRALHGDVVQAQREVILAGFRS 421
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR--------------- 452
GKF LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR
Sbjct: 422 GKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRY 481
Query: 453 -----------------------------AGVEAAETITQVSDSVIPAFKSAAEELLNNS 483
AG EAA+ I VSDSVIP F+ AE+LL++S
Sbjct: 482 KYSVSRLERESGVKFEHISAPQPTDVAQSAGSEAADAIASVSDSVIPVFRQQAEQLLSSS 541
Query: 484 GLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPE 543
LSAA+LLAKALAKAVGYT+IK RSLLSS+ED+ T+ L+ G+ +++P FAF +L+RF+PE
Sbjct: 542 TLSAADLLAKALAKAVGYTDIKKRSLLSSMEDYATLHLQTGRQMWSPGFAFTILKRFMPE 601
Query: 544 EKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQERE 598
EK+ VKG LTADG G VFDVP AD++ + ++NAA V+++ ++QLPPLQE++
Sbjct: 602 EKLADVKGATLTADGTGVVFDVPAADVEDYIQASENAAQVTIDEVQQLPPLQEKQ 656
>gi|242045340|ref|XP_002460541.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
gi|241923918|gb|EER97062.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
Length = 711
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/537 (65%), Positives = 427/537 (79%), Gaps = 44/537 (8%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS PLR+ L+SKGI++LFPIQA TFD+VLDG+DLVGRARTGQGKTLAFVLPI
Sbjct: 121 PNALTNFRISEPLRQSLRSKGIKALFPIQATTFDLVLDGNDLVGRARTGQGKTLAFVLPI 180
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T +GR PSV+VLLPTRELA QVH DF+ YG GL++CC+YGG+PY
Sbjct: 181 LESLVNGAHKASRRTEHGRTPSVIVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPY 240
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G+D+V+GTPGR+KD I +G ++L +LKFRVLDEADEML MGFV+DVELILG
Sbjct: 241 RPQEMALRRGVDIVVGTPGRVKDFIVKGTLNLKNLKFRVLDEADEMLNMGFVDDVELILG 300
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVEDA KVQTLLFSATLP WV +S +FLK D+KT+DLVGNEK+KAS +V+H+ LPC+ +
Sbjct: 301 KVEDATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKA 360
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+QVIPDIIRCYS GGRTIIFTETK+SAS+L+ L+PG+RALHGD+ Q+QREV LAGFR
Sbjct: 361 ARAQVIPDIIRCYSHGGRTIIFTETKDSASELSGLIPGSRALHGDVVQAQREVILAGFRG 420
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR--------------- 452
GKF LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR
Sbjct: 421 GKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRY 480
Query: 453 -----------------------------AGVEAAETITQVSDSVIPAFKSAAEELLNNS 483
AG EAA+ I+ VSDSVIP F+ AE+LL++S
Sbjct: 481 KYSVNRLERESGVKFEHISAPQPTDVAQSAGSEAADAISSVSDSVIPVFRQQAEQLLSSS 540
Query: 484 GLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPE 543
LSAA+LLAKALAKAVGYT+IK RSLLSS+ED+ T+ L+ G+P+++P FAF +L+RF+PE
Sbjct: 541 SLSAADLLAKALAKAVGYTDIKKRSLLSSMEDYTTLHLQTGRPMWSPGFAFTILKRFMPE 600
Query: 544 EKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQS 600
EK+ VKG LTADG G VFDVP AD++ + ++NAA V+++ +KQLPPLQE+EQS
Sbjct: 601 EKLADVKGATLTADGTGVVFDVPAADVEDYIQASENAAQVTIDEVKQLPPLQEKEQS 657
>gi|414886328|tpg|DAA62342.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 707
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/539 (65%), Positives = 426/539 (79%), Gaps = 44/539 (8%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS LR+ L+SKGI+SLFPIQA TFD+VLDGSDLVGRARTGQGKTLAFVLPI
Sbjct: 120 PNALTNFRISESLRQSLRSKGIKSLFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPI 179
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T +GR PSVLVLLPTRELA QVH DF+ YG GL++CC+YGG+PY
Sbjct: 180 LESLVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPY 239
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G+D+V+GTPGR+KD I +G ++L LKFRVLDEADEML MGFV+DVELILG
Sbjct: 240 RPQEMALRRGVDIVVGTPGRVKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILG 299
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVEDA KVQTLLFSATLP WV +S +FLK D+KT+DLVGNEK+KAS +V+H+ LPC+ +
Sbjct: 300 KVEDATKVQTLLFSATLPEWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKA 359
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+QVIPDIIRCYS GGRTIIFTETK+SAS+L+ L+ G+RALHGD+ Q+QREV LAGFRS
Sbjct: 360 ARAQVIPDIIRCYSHGGRTIIFTETKDSASELSGLIHGSRALHGDVAQAQREVILAGFRS 419
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR--------------- 452
GKF LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR
Sbjct: 420 GKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRY 479
Query: 453 -----------------------------AGVEAAETITQVSDSVIPAFKSAAEELLNNS 483
AG EAA+ I VSDSVIP F+ AE+LL++S
Sbjct: 480 KHSVSRLERESGVKFEHISAPQPTDVAQSAGSEAADAIASVSDSVIPIFRQQAEQLLSSS 539
Query: 484 GLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPE 543
LSAA+LLAKALAKAVGYT+IK RSLLSSLED+ T+ L+ G+P+++P FAF +L+RF+PE
Sbjct: 540 SLSAADLLAKALAKAVGYTDIKKRSLLSSLEDYSTLHLQTGRPMWSPGFAFTILKRFMPE 599
Query: 544 EKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRG 602
+K+ VKG LTADG G VFDVP AD++ + +++AA V+++ +KQLPPLQE++QSRG
Sbjct: 600 DKLADVKGATLTADGTGVVFDVPAADVEDYIQASESAAQVTIDEVKQLPPLQEKDQSRG 658
>gi|168023701|ref|XP_001764376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684528|gb|EDQ70930.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 689
Score = 616 bits (1588), Expect = e-173, Method: Compositional matrix adjust.
Identities = 324/588 (55%), Positives = 409/588 (69%), Gaps = 64/588 (10%)
Query: 72 GEPVNLKSEKEKKKK----------KKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLR 121
GEP +K K+K+ K K KV G +E G + P AVS F I LR
Sbjct: 66 GEPEVVKVSKKKRAKSPEDDGAAAKKIQKVVENGG---KEVGAAVDPMAVSNFNIGKALR 122
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-NGPTKASK 180
+KLK+KGIESLFPIQA TF+ V DG+D+VGRARTGQGKTLAFVLP+LESL+ +G TK +
Sbjct: 123 DKLKAKGIESLFPIQAQTFEAVFDGNDMVGRARTGQGKTLAFVLPVLESLSQSGYTKNLQ 182
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
+ GRA +V+VL PTRELAKQVH DF+ YG AVGL++ C+YGGAPY QE L++G+D+
Sbjct: 183 R---GRAAAVIVLAPTRELAKQVHADFETYGSAVGLSTVCVYGGAPYGPQENALRRGVDI 239
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGRIKDH ERG ++L SLKFR+LDEADEML MGFV+DVE ILG V+D +KVQTLLF
Sbjct: 240 VVGTPGRIKDHFERGTLNLKSLKFRILDEADEMLNMGFVDDVETILGGVDDPSKVQTLLF 299
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SATLP+WV+ I+ KFLK+ +KT+DLVG+EKMKAS +VRH++LP S R+Q++ D+I CY
Sbjct: 300 SATLPTWVQQIARKFLKATRKTVDLVGDEKMKASNSVRHLLLPGHYSMRTQLVQDVISCY 359
Query: 361 SSGGRTIIFTETKESASQLADLLPG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
SGGR I+FTETK AS+LA L ARALHGDI Q+QREVTL GFR+GKF LVAT+V
Sbjct: 360 GSGGRIIVFTETKNDASELAGALKSGTARALHGDIPQNQREVTLQGFRTGKFSVLVATDV 419
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG-------------------VE--- 456
AARGLDINDVQL+IQCEPPRD E YIHRSGRTGRAG +E
Sbjct: 420 AARGLDINDVQLVIQCEPPRDAETYIHRSGRTGRAGNTGVSVLFFDRKKEYMVPQIERKA 479
Query: 457 ----------------------AAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKA 494
A +++ VSD+V+P F+ AA++L+ +SGL ++LAKA
Sbjct: 480 GFKFERIAAPQPLDIAKASGNTATDSVLAVSDTVVPLFRQAAKDLVESSGLPILDILAKA 539
Query: 495 LAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMAL 554
+AK G TE+K RSLL+S +D T++L+A +Y+P++AF LR+FLPE + V+ M L
Sbjct: 540 IAKISGQTELKRRSLLTSHDDSTTLILKANTSMYSPTYAFNCLRKFLPETIINEVRRMNL 599
Query: 555 TADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRG 602
T DG GAVFDVP ++D F + N ++EVL LP LQ + G
Sbjct: 600 TVDGKGAVFDVPSKNVDEFIA-EQEGENFTVEVLDALPELQVKPDRSG 646
>gi|302791703|ref|XP_002977618.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
gi|300154988|gb|EFJ21622.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
Length = 663
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 315/568 (55%), Positives = 399/568 (70%), Gaps = 53/568 (9%)
Query: 79 SEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAM 138
+E+ +KK+KK++V P + E+ + E+P A+ FRIS ++ L+ KGI++LF IQA
Sbjct: 53 AEEPEKKRKKSEV-PSS--PEKSDIDVENPYALENFRISDAVKGMLREKGIKALFQIQAQ 109
Query: 139 TFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198
+FD+VLDG DLVGRARTGQGKTLAFVLPI+ESL +S K GYGRAP+VLVL PTRE
Sbjct: 110 SFDIVLDGDDLVGRARTGQGKTLAFVLPIIESLRKS---SSGKKGYGRAPTVLVLAPTRE 166
Query: 199 LAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID 258
LAKQVH DF+ YGGA GL++ C+YGG+ Y Q+ +++G+D+V+GTPGRIKD ++RG+++
Sbjct: 167 LAKQVHADFECYGGAAGLSTICVYGGSQYGPQQNAMRRGVDIVVGTPGRIKDFLDRGDLN 226
Query: 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKS 318
L +LKFRVLDEADEML MGFVE VE ILG VED + VQTLLFSAT+PSWVK I+T+FLK
Sbjct: 227 LKTLKFRVLDEADEMLNMGFVEAVEAILGAVEDTSSVQTLLFSATMPSWVKEIATRFLKP 286
Query: 319 DKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQ 378
+KKT+DLVG+EKMKAS NV+H++L C+ SARSQ+I D+I+ Y SGGR I+FTETK AS+
Sbjct: 287 NKKTVDLVGDEKMKASNNVKHLLLQCAYSARSQMIADVIKVYGSGGRVIVFTETKNDASE 346
Query: 379 LADLLPG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII-QCE 435
LA L AR LHGDI Q+QRE TLAGFRS KF+ LVAT+VAARGLDINDVQLII QCE
Sbjct: 347 LAGSLGTNVARPLHGDIPQAQREHTLAGFRSAKFLVLVATDVAARGLDINDVQLIIQQCE 406
Query: 436 PPRDVEAYIHRSGRTGRAG----------------------------------------- 454
PP+DVE YIHRSGRTGRAG
Sbjct: 407 PPKDVETYIHRSGRTGRAGNTGIAVMMFDRKKEYMIPMIEAKAGFKFEKITPPQPSTIAK 466
Query: 455 ---VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLS 511
A + ++ VSDSV+P FK AAE+L+++ A ELLAKALAK G TE+K RSL +
Sbjct: 467 ESSFTAIKAVSAVSDSVVPFFKEAAEQLVSDCKRPAVELLAKALAKIAGCTEVKRRSLQT 526
Query: 512 SLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLD 571
S +D T++ E KPI++ + F LR FL EE ++ M LTADG AVFDVP A +D
Sbjct: 527 SHDDATTLLFEVSKPIHSVGYIFNALRGFLSEECSSSIRRMNLTADGKAAVFDVPSAMVD 586
Query: 572 LFRSGADNAANVSLEVLKQLPPLQEREQ 599
F G D A N ++ + + LP L + +
Sbjct: 587 EFLIGNDGADNFTISIPESLPELTAKPE 614
>gi|302786878|ref|XP_002975210.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
gi|300157369|gb|EFJ23995.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
Length = 626
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 308/548 (56%), Positives = 385/548 (70%), Gaps = 50/548 (9%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
E+ + E+P A+ FRIS ++ L+ KGI++LF IQA +FD+VLDG DLVGRARTGQG
Sbjct: 33 EKSDIDVENPYALENFRISDAVKGMLREKGIKALFQIQAQSFDIVLDGDDLVGRARTGQG 92
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
KTLAFVLPI+ESL +S K GYGRAP+VLVL PTRELAKQVH DF+ YGGA GL++
Sbjct: 93 KTLAFVLPIIESLRKS---SSGKKGYGRAPTVLVLAPTRELAKQVHADFECYGGAAGLST 149
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C+YGG+ Y Q+ +++G+D+V+GTPGRIKD ++RG+++L +LKFRVLDEADEML MGF
Sbjct: 150 ICVYGGSQYGPQQNAMRRGVDIVVGTPGRIKDFLDRGDLNLKTLKFRVLDEADEMLNMGF 209
Query: 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338
VE VE ILG VED + VQTLLFSAT+PSWVK I+T+FLK +KKT+DLVG+EKMKAS NV+
Sbjct: 210 VEAVEAILGAVEDTSSVQTLLFSATMPSWVKEIATRFLKPNKKTVDLVGDEKMKASNNVK 269
Query: 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG--ARALHGDIQQS 396
H++L C+ SARSQ+I D+I+ Y SGGR I+FTETK AS+LA L AR LHGDI Q+
Sbjct: 270 HLLLQCAYSARSQMIADVIKVYGSGGRVIVFTETKNDASELAGSLGTNVARPLHGDIPQA 329
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ-CEPPRDVEAYIHRSGRTGRAG- 454
QRE TLAGFRS KF+ LVAT+VAARGLDINDVQLIIQ CEPP+DVE YIHRSGRTGRAG
Sbjct: 330 QREHTLAGFRSAKFLVLVATDVAARGLDINDVQLIIQQCEPPKDVETYIHRSGRTGRAGN 389
Query: 455 -------------------------------------------VEAAETITQVSDSVIPA 471
A + ++ VSDSV+P
Sbjct: 390 TGIAVMMFDRKKEYMIPMIEAKAGFKFEKITPPQPSTIAKESSFTAIKAVSAVSDSVVPF 449
Query: 472 FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPS 531
FK AAE+L+++ A ELLAKALAK G TE+K RSL +S +D T++ E KPI++
Sbjct: 450 FKEAAEQLVSDCKRPAMELLAKALAKIAGCTEVKRRSLQTSHDDATTLLFEVSKPIHSVG 509
Query: 532 FAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQL 591
+ F LR FL EE ++ M LTADG AVFDVP A +D F G D A N ++ + + L
Sbjct: 510 YIFNALRGFLSEECSSSIRRMNLTADGKAAVFDVPSAMVDEFLIGNDGADNFTISIPEAL 569
Query: 592 PPLQEREQ 599
P L + +
Sbjct: 570 PELTAKPE 577
>gi|212721126|ref|NP_001132058.1| uncharacterized protein LOC100193470 [Zea mays]
gi|194693318|gb|ACF80743.1| unknown [Zea mays]
Length = 506
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 263/347 (75%), Positives = 305/347 (87%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PNA++ FRIS LR+ L+SKGI+SLFPIQA TFD+VLDGSDLVGRARTGQGKTLAFVLPI
Sbjct: 120 PNALTNFRISESLRQSLRSKGIKSLFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPI 179
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LESL NG KAS++T +GR PSVLVLLPTRELA QVH DF+ YG GL++CC+YGG+PY
Sbjct: 180 LESLVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPY 239
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G+D+V+GTPGR+KD I +G ++L LKFRVLDEADEML MGFV+DVELILG
Sbjct: 240 RPQEMALRRGVDIVVGTPGRVKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILG 299
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
KVEDA KVQTLLFSATLP WV +S +FLK D+KT+DLVGNEK+KAS +V+H+ LPC+ +
Sbjct: 300 KVEDATKVQTLLFSATLPEWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKA 359
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS 407
AR+QVIPDIIRCYS GGRTIIFTETK+SAS+L+ L+ G+RALHGD+ Q+QREV LAGFRS
Sbjct: 360 ARAQVIPDIIRCYSHGGRTIIFTETKDSASELSGLIHGSRALHGDVAQAQREVILAGFRS 419
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
GKF LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG
Sbjct: 420 GKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 466
>gi|168015062|ref|XP_001760070.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688820|gb|EDQ75195.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 657
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 274/485 (56%), Positives = 349/485 (71%), Gaps = 49/485 (10%)
Query: 157 QGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGL 216
QGKTLAFVLP+LESL+ + +K G GRAP+V+VL PTRELAKQVH DF+ YG AVGL
Sbjct: 129 QGKTLAFVLPVLESLSQ--SGYTKSLGRGRAPAVIVLAPTRELAKQVHADFETYGNAVGL 186
Query: 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276
++ C+YGGAPY QE L++G+D+V+GTPGRIKDH+ERG ++L SLKFR+LDEADEML M
Sbjct: 187 STVCVYGGAPYGPQENALRRGVDIVVGTPGRIKDHLERGGLNLKSLKFRILDEADEMLNM 246
Query: 277 GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
GFV+DVE ILG V+D +KVQTLLFSATLP+WV+ I+ KFLK +++T+DLVG+EKMKAS N
Sbjct: 247 GFVDDVEKILGGVDDPSKVQTLLFSATLPTWVQQIARKFLKPERRTVDLVGDEKMKASNN 306
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG--ARALHGDIQ 394
V+H++LP S R+Q++ D+I+CY SGGR I+FTETK AS+LA +L ARALHGDI
Sbjct: 307 VKHLLLPGHYSMRTQLVQDVIQCYGSGGRIIVFTETKNDASELAGVLKSGTARALHGDIP 366
Query: 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
Q+QREVTL GFR+ KF LVAT+VAARGLDINDVQL+IQCEPPRD E YIHRSGRTGRAG
Sbjct: 367 QNQREVTLQGFRTSKFSVLVATDVAARGLDINDVQLVIQCEPPRDAETYIHRSGRTGRAG 426
Query: 455 -------------------VE-------------------------AAETITQVSDSVIP 470
+E A + + VSD+VIP
Sbjct: 427 NTGISVLFYDRKKEYMIPQIERKAGFKFERIAAPQPADIAKASGNTATDGVLAVSDTVIP 486
Query: 471 AFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTP 530
F+ AAE+L+ +SGL ++LAKA+AK G TE+K RSLL+S +D T++L+A +Y+P
Sbjct: 487 LFRQAAEDLVKSSGLPVLDVLAKAIAKISGQTELKRRSLLTSHDDATTLMLKANTKMYSP 546
Query: 531 SFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQ 590
++AF LR++LPEE V V+ M LT D GAVFDVP ++ F + + N ++EVL
Sbjct: 547 TYAFNCLRKYLPEETVNEVRRMNLTTDCTGAVFDVPSRSVEEFIAEQE-GENFTVEVLDA 605
Query: 591 LPPLQ 595
LP LQ
Sbjct: 606 LPELQ 610
>gi|307109393|gb|EFN57631.1| hypothetical protein CHLNCDRAFT_20835, partial [Chlorella
variabilis]
Length = 608
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 290/544 (53%), Positives = 359/544 (65%), Gaps = 54/544 (9%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P A+ F++S P++ L++KGIE+LF IQA +L+G DLVGRARTG GKTLAFVLPI
Sbjct: 2 PLALDNFKLSEPVKSLLRAKGIEALFDIQAQCLPPLLEGQDLVGRARTGCGKTLAFVLPI 61
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
+E L G A K +GRAPSV+VL PTRELAKQV DF+ Y A LT+ CLYGG Y
Sbjct: 62 VERLAGG-QGAGGKRAFGRAPSVVVLAPTRELAKQVAADFEYYAKAFSLTTVCLYGGTQY 120
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G+DVVIGTPGR+KDH+ERG + L+ L+FRVLDE DEML MGFVEDVE IL
Sbjct: 121 GPQEGMLRRGVDVVIGTPGRVKDHLERGTLKLNQLRFRVLDECDEMLNMGFVEDVEKILN 180
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
DA VQTLLFSATLP WVK I+ +FLK T+DLVG++KMKAST+VRH++LPC S
Sbjct: 181 AGVDAATVQTLLFSATLPHWVKDITKRFLKPGFTTVDLVGSQKMKASTSVRHLLLPCHWS 240
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAG 404
RSQ++PD+++CY GRTIIFTETK A++L+ L GARALHGDI Q QREVTLAG
Sbjct: 241 QRSQIVPDLVKCYGVCGRTIIFTETKNDANELSGTLAESFGARALHGDIPQGQREVTLAG 300
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV--------- 455
FRSGKF LVAT+VAARGLDI+ V+L+IQ EPP+D E YIHRSGRTGRAG
Sbjct: 301 FRSGKFSVLVATDVAARGLDISGVELVIQLEPPKDPETYIHRSGRTGRAGQTGICLTLVD 360
Query: 456 -----------------------------------EAAETITQVSDSVIPAFKSAAEELL 480
A E + V SV+P F++AA++LL
Sbjct: 361 RRKEGLIPYIQTKAGLKFERVGAPQPSDMAQLAGERALEAVQAVDVSVLPFFRAAAQKLL 420
Query: 481 NNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRF 540
+ G S + +A ALAK G+ E++ RSLL++ ED T+ + P+ P FG LR+
Sbjct: 421 ESVG-SPEDAVALALAKITGHVEMRPRSLLTAHEDFTTLRFVSPWPVEKPGQVFGFLRKH 479
Query: 541 LPEEK-VELVKGMALTADGNGAVFDVP--VADLDLFRSGADNA--ANVSLEVLKQLPPLQ 595
+ EE+ VE K M LTADG GAVFDVP +A L + G + A L+V LP L+
Sbjct: 480 MHEEETVEEAKRMTLTADGLGAVFDVPTSLAKEFLAKCGKNEGTRATAHLQVATSLPELK 539
Query: 596 EREQ 599
EREQ
Sbjct: 540 EREQ 543
>gi|384247126|gb|EIE20614.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 698
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 271/506 (53%), Positives = 336/506 (66%), Gaps = 50/506 (9%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P AV FR+S ++ L+ KGIE+LF IQA T + +LDG DLVGRARTGQGKTLAFVLPI
Sbjct: 103 PLAVDNFRLSDKVKALLREKGIEALFSIQAHTLNHLLDGFDLVGRARTGQGKTLAFVLPI 162
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
+E L A+++ GR P V+VL PTRELAKQVH DF+ G A L++ CLYGGAP
Sbjct: 163 VERLLAHNISATRRQ-QGRTPRVIVLAPTRELAKQVHADFENIGRAANLSTVCLYGGAPM 221
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G DVV+GTPGR+KDH+ERGN+ L L FRVLDE DEML MGFVEDVE IL
Sbjct: 222 SPQEQILRRGCDVVVGTPGRVKDHLERGNLKLQDLMFRVLDECDEMLNMGFVEDVEKILN 281
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
D KVQTLLFSATLPSWVK I+ +FL+ + K +DLVG +KMKAST+V+H+VLPC S
Sbjct: 282 AGGDI-KVQTLLFSATLPSWVKDITRRFLQPNHKLVDLVGTDKMKASTSVKHMVLPCHWS 340
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQL-ADLLPGARA--LHGDIQQSQREVTLAG 404
R+ V D++RCY + GRTIIF +TK+ ++L A L G RA LHGDI Q QREVTL
Sbjct: 341 QRATVAADLVRCYGALGRTIIFCDTKKDCNELVASLGEGMRAQPLHGDIPQQQREVTLKA 400
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR------------ 452
FR+ KF LVAT+VAARGLDIN V+L+IQ EPP+D E YIHRSGRTGR
Sbjct: 401 FRAAKFDILVATDVAARGLDINGVELVIQIEPPKDPETYIHRSGRTGRASSTGVSVTLVD 460
Query: 453 --------------------------------AGVEAAETITQVSDSVIPAFKSAAEELL 480
AG A+E++ +V +V+P F++AA +LL
Sbjct: 461 RKKEGLIPFIAKRAGVTFERIGAPQPSEMARIAGERASESLVEVDKTVVPWFRAAAAQLL 520
Query: 481 NNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRF 540
G E LA ALAK G++ I++RSLL++ ED+ T+ AG+ I P F F LRR
Sbjct: 521 ETVG-DPEEALAMALAKVTGFSSIRARSLLTAHEDYTTLQFHAGQEIQRPGFVFTSLRRH 579
Query: 541 LPEEKVELVKGMALTADGNGAVFDVP 566
L +E VE +KG+ LT DG A+FDVP
Sbjct: 580 LSDEVVEQIKGITLTTDGKSAIFDVP 605
>gi|412985798|emb|CCO16998.1| predicted protein [Bathycoccus prasinos]
Length = 689
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 263/555 (47%), Positives = 346/555 (62%), Gaps = 64/555 (11%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
+ +P A+ F +S + L+ KGI++LF IQA T D L G D+VGRARTG GKTLAFV
Sbjct: 78 TPNPLALENFSLSPEVVSALQKKGIDALFAIQAQTLDTALSGKDIVGRARTGCGKTLAFV 137
Query: 165 LPILESLT-NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
LPI+E + + PT AS + GR P V VL PTRELAKQV DFD G A L + C+YG
Sbjct: 138 LPIVEQINKSDPTPASGRRLQGRRPVVCVLCPTRELAKQVGADFDWVGQAFNLKTVCVYG 197
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
GAPY QE L+ G D+++GTPGR+KDH++R N+ +LKFRVLDEADEML MGFV+DVE
Sbjct: 198 GAPYRDQEQGLRSGCDIIVGTPGRVKDHLDRKNLKFDNLKFRVLDEADEMLNMGFVDDVE 257
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
IL KV + +QTLLFSATLP WVK I+ +FLK D TIDLVGNEK KAS V+H++LP
Sbjct: 258 TIL-KV--SGDIQTLLFSATLPPWVKDIAKRFLKKDYATIDLVGNEKQKASGQVQHLLLP 314
Query: 344 CSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQ 397
C R +IPD+IR + +GGR I+F +TK ++L D L GA+ALHGDI Q+
Sbjct: 315 CQWQERVSLIPDLIRAKAPTGGRCILFCDTKRDCTELCDALQSSLEKGAKALHGDIAQNN 374
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE- 456
REV L GFR KF LVAT+VAARGLDI+ V+L+IQCEPP+D E YIHRSGRTGRAG
Sbjct: 375 REVVLQGFRDNKFQVLVATDVAARGLDISGVELVIQCEPPKDPETYIHRSGRTGRAGATG 434
Query: 457 -AAETITQVSDSVIP------------------------------------------AFK 473
+T ++ IP F
Sbjct: 435 ICVTLLTPRNEWAIPNIERKGGFRFVRIGPPQPAEMAKAAAKIVCEKVRAVHKGAAKLFM 494
Query: 474 SAAEELL-----NNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEA-GKPI 527
AA +LL ++ G A E+LA ALA A G+ E++ RSLL+S T++L A G I
Sbjct: 495 QAARDLLEEGDDHDEGRDAVEVLAMALAHACGHGELRQRSLLTSTAGSTTLILSAGGTEI 554
Query: 528 YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAAN---VS 584
TP++ + L++ LPE++V++ + + L+ D AVFDVP D + ++N++ ++
Sbjct: 555 RTPTYVWNFLKQRLPEDEVQINR-LTLSQDNLKAVFDVPAKLADKYCGLSENSSGRSAIT 613
Query: 585 LEVLKQLPPLQEREQ 599
+EV ++LP L +R Q
Sbjct: 614 IEVCEELPELSQRPQ 628
>gi|308802996|ref|XP_003078811.1| putative RNA helicase (ISS) [Ostreococcus tauri]
gi|116057264|emb|CAL51691.1| putative RNA helicase (ISS) [Ostreococcus tauri]
Length = 693
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 275/633 (43%), Positives = 365/633 (57%), Gaps = 94/633 (14%)
Query: 32 AALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKV 91
AA TE +K S +++ SK+ K EE+ER+E ELG P
Sbjct: 30 AAATETKKKRKASDEEDESKREKSRARREEDERAEGDLELGTP----------------- 72
Query: 92 EPEAGVEEQERGESEHPNAVSRFR-ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
EP E +P A+ F+ ++ P++ L+ KG ++LF IQA T ++ L G D+V
Sbjct: 73 EP----------EEPNPLALDNFKGLTDPVKTTLRKKGYDALFQIQAETLEIALGGRDVV 122
Query: 151 GRARTGQGKTLAFVLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209
GRARTG GKTLAFVLPI+E + P A+ + GR P +VL PTRELAKQV DFD
Sbjct: 123 GRARTGCGKTLAFVLPIIELMAKMSPMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDW 182
Query: 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269
G + G S C+YGGAPY QE L+ G+D+VIGTPGR+KDH+ER + ++ LKFRVLDE
Sbjct: 183 IGNSYGFKSLCVYGGAPYREQEMGLRSGVDIVIGTPGRMKDHLERKTLMMTDLKFRVLDE 242
Query: 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE 329
ADEML MGFV+DVE IL + + VQTLLFSATLPSWVK IS +FLK + T+DLVG+E
Sbjct: 243 ADEMLNMGFVDDVETIL---KSSGDVQTLLFSATLPSWVKDISKRFLKPNYSTVDLVGDE 299
Query: 330 KMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLADLLP---- 384
K KAS V+H++LPC S R ++ D+IR + GGR I+F +TK +L D L
Sbjct: 300 KQKASGAVQHMLLPCQWSDRVDLVCDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIP 359
Query: 385 -GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
GA+ALHGD+ QSQREV L+ FR KF LVAT+VAARGLDI V+L+IQCEPP+D E Y
Sbjct: 360 KGAKALHGDVSQSQREVVLSLFREDKFQVLVATDVAARGLDITGVELVIQCEPPKDAETY 419
Query: 444 IHRSGRTGRAGVE--------------------------------------------AAE 459
IHRSGRTGRAG A E
Sbjct: 420 IHRSGRTGRAGATGISVTLCTPRNEWAVPNIERKGGFKFIRIGPPQPAEMAKAAGKIAGE 479
Query: 460 TITQVSDSVIPAFKSAAEELL------NNSGLSAAELLAKALAKAVGYTEIKSRSLLSSL 513
I +V F A +LL + G E+LA A+AK G+ E++ RSLL+S
Sbjct: 480 QIRKVHKGAAKLFMDVARDLLEGEDSDSEEGRDPVEVLAMAIAKLAGHGELRQRSLLTSH 539
Query: 514 EDHVTVVLEA-GKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDL 572
T++ A G I TP++ + LR+ + E +++L + + L+ D AVFDVP D
Sbjct: 540 SGQTTLLFTANGVDIRTPTYVWNFLRQRMDESELQL-RRLTLSMDNKAAVFDVPSELADK 598
Query: 573 FRSGADNAAN----VSLEVLKQLPPLQEREQSR 601
F + ++ A + V++ +LP L +R Q+R
Sbjct: 599 FVALSEPATSGKTAVTIIECAELPELSQRPQAR 631
>gi|145345534|ref|XP_001417262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577489|gb|ABO95555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 654
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 256/555 (46%), Positives = 332/555 (59%), Gaps = 68/555 (12%)
Query: 104 ESEHPN--AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
E E PN A+ F +S P++ L+ KG ++LF IQA T ++ L G D+VGRARTG GKTL
Sbjct: 76 EPEEPNPLALDNFALSEPVKATLRKKGFDALFAIQAETLEIALSGKDVVGRARTGCGKTL 135
Query: 162 AFVLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220
AFVLPI+E + P A+ + GR P +VL PTRELAKQV DFD G + G S C
Sbjct: 136 AFVLPIVEEMAKISPMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSFGFKSVC 195
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG PY QE L+ G DVVIGTPGR+KDH+ER + + LKFRVLDEADEML MGFV+
Sbjct: 196 VYGGTPYREQEMGLRGGCDVVIGTPGRMKDHLERKTLMMDKLKFRVLDEADEMLNMGFVD 255
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVELIL + + VQTLLFSATLP WVK I+ +FLK D T+DLVG++K KAS V+H+
Sbjct: 256 DVELIL---KSSGDVQTLLFSATLPPWVKDIAKRFLKPDYATVDLVGDQKQKASGAVQHM 312
Query: 341 VLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLADLLP-----GARALHGDIQ 394
+LPC S R ++ D+IR + GGR I+F +TK +L D L GA+ALHGD+
Sbjct: 313 LLPCQWSDRVDLVCDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVS 372
Query: 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
Q QREV LAGFR KF LVAT+VAARGLDI V+L+IQCEPP+D E YIHRSGRTGRAG
Sbjct: 373 QGQREVVLAGFREDKFQVLVATDVAARGLDITGVELVIQCEPPKDAETYIHRSGRTGRAG 432
Query: 455 VE--------------------------------------------AAETITQVSDSVIP 470
A E I +V
Sbjct: 433 ATGISVTLCTPRSEWAVPNIERKGGFKFVRIGPPQPAEMAKAAGKIAGEQIRKVHKGAAK 492
Query: 471 AFKSAAEELL------NNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAG 524
F A +LL + G E+LA A+AK G+ E++ RSLL+S T++ AG
Sbjct: 493 LFMDVARDLLEGEDSDSEEGRDPVEVLAMAIAKLAGHGELRQRSLLTSHSGQTTLLFTAG 552
Query: 525 KP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAAN- 582
+ I TP++ + LR+ + E ++L + + L+ D AVFDVP D F + ++ A++
Sbjct: 553 ETQIRTPTYVWNFLRQRMDENDLQL-RRLTLSVDNMAAVFDVPSELADKFCALSEPASSG 611
Query: 583 ---VSLEVLKQLPPL 594
VS+ ++LP L
Sbjct: 612 KSAVSITACEELPEL 626
>gi|159488923|ref|XP_001702450.1| RNA helicase [Chlamydomonas reinhardtii]
gi|158271118|gb|EDO96945.1| RNA helicase [Chlamydomonas reinhardtii]
Length = 737
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 244/542 (45%), Positives = 342/542 (63%), Gaps = 55/542 (10%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+ RF++S ++ L+S+ IESLFPIQAMT + ++G D+VGRARTG GKTLAF +P++E
Sbjct: 106 LDRFKLSEQVKSMLRSQNIESLFPIQAMTLEPAMEGLDVVGRARTGCGKTLAFTVPVVER 165
Query: 171 LTNGPTKASK-KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ S G GR P +VL PTRELAKQV E F G A L + C+YGG PY
Sbjct: 166 IIAEQKSGSGIGRGAGRLPVCIVLAPTRELAKQVQEVFANTGKAANLYTMCVYGGTPYDG 225
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
QE L +G+DVV+GTPGR+KD +ERG + LS+++FRVLDE D+ML MGF+EDVE IL +
Sbjct: 226 QEQALSRGVDVVVGTPGRVKDLLERGTLKLSNIRFRVLDEVDQMLAMGFIEDVETILKQG 285
Query: 290 EDA-NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
E+ +++QTLLFSATLP WV+ ++ +FL+ K +DLVG+++M+A+ V+H++LPCS
Sbjct: 286 ENNRDQIQTLLFSATLPKWVQGLTQRFLRPGHKFLDLVGDDRMQAAVTVKHLMLPCSYPQ 345
Query: 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL---PGARALHGDIQQSQREVTLAGF 405
R+ ++ D+I Y +GGRTIIFT++K+ A++L+ +L GA+ALHGD+ QS RE TL GF
Sbjct: 346 RAGLLKDLITSYGAGGRTIIFTDSKKEAAELSVVLGDSLGAQALHGDLAQSMREQTLDGF 405
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG----------- 454
R G+F L+AT+VAARGLD+ ++L++ +PP D E YIHRSGRTGRAG
Sbjct: 406 RKGRFAILIATDVAARGLDVTGIELVLMVDPPADWETYIHRSGRTGRAGSSGVCVTLVTK 465
Query: 455 ------------------------------VEAAETIT---QVSDSVIPAFKSAAEELLN 481
+ A T++ +V +V+ F+ AAE L+
Sbjct: 466 KMEYMVPIIEKRAGMKFERIGAPQPADMARIAAERTLSLLGEVDPAVVGHFREAAERYLS 525
Query: 482 NS---GLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLE-AGKPIYTPSFAFGVL 537
S G AE LA+ALAK GY +K+RSLL++ +D T++ E A I P +G L
Sbjct: 526 ESAADGRDPAEALARALAKITGYKVMKARSLLTAHDDCTTLLFECADHTIENPGSVWGHL 585
Query: 538 RRF--LPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQ 595
R+ L E ++ VK M +TADG GAVFDVP + F A+ ++L + LP L+
Sbjct: 586 RKTCRLDEGLLDQVKRMTVTADGKGAVFDVPSEHVQAFLEAAEEKRGITLTLPSSLPELK 645
Query: 596 ER 597
R
Sbjct: 646 VR 647
>gi|303277565|ref|XP_003058076.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460733|gb|EEH58027.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 748
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 252/550 (45%), Positives = 335/550 (60%), Gaps = 64/550 (11%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P VS F IS + +L++KGI SL+ IQA TF VLDG D+V RA+TG GKTLAFVLPI
Sbjct: 126 PLRVSNFNISREVCARLETKGITSLYGIQAQTFQHVLDGKDIVARAKTGCGKTLAFVLPI 185
Query: 168 LESLT-NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226
+E++ P A+ + GRAP V +L PTRELAKQVH DF G A LT+ C+YGGAP
Sbjct: 186 VEAINREHPVPANGRRAQGRAPVVALLAPTRELAKQVHADFQHIGHAFKLTAICVYGGAP 245
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
Y Q+ L+ G D+VIGTPGR+KDH+ER + L+FRVLDEADEML MGFVED+E+IL
Sbjct: 246 YGDQQRLLRAGCDIVIGTPGRMKDHLERKTLSFDKLRFRVLDEADEMLNMGFVEDIEMIL 305
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346
+D K+QTLLFSATLP WV IS +FL+ D T+DLVG+EK KAS V H++L C
Sbjct: 306 NHAKDNEKLQTLLFSATLPKWVADISRRFLQPDHVTVDLVGDEKQKASAAVTHMLLNCQW 365
Query: 347 SARSQVIPDIIRCYSSG-GRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREV 400
S R++++ D+IR G GR I+F +TK +L + L GA+ALHGD+ Q+QREV
Sbjct: 366 SERTELVCDLIRAKVPGDGRVIVFCDTKRDCGELQEALQKELEKGAKALHGDVNQAQREV 425
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRS--GRTGRAGVEAA 458
LAGFR+ KF TLVAT+VAARGLDI+ V+L++QCEPP++ E YIHRS G A E
Sbjct: 426 VLAGFRANKFQTLVATDVAARGLDISGVELVVQCEPPKEPETYIHRSGRTGRGGATGECV 485
Query: 459 ETITQVSDSVIP------------------------------------------AFKSAA 476
T ++ IP F AA
Sbjct: 486 TLCTPRNEWAIPNIERKGGFKFQRIAPPQPAEMAAAAAKIVIAQVRAVAKGAAKMFMDAA 545
Query: 477 EELL------NNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAG--KPIY 528
+ELL ++ G E+LA ALAK G+ E+++RSLL+S T++ AG I
Sbjct: 546 KELLEGGAGEHDEGADPTEMLAAALAKLAGHGELRTRSLLTSHTGQTTLLFAAGGTTEIR 605
Query: 529 TPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAAN----VS 584
TP++ + LR+ L E ++ ++ + L AD GAVFDVP D F + ++N + ++
Sbjct: 606 TPTYVWNFLRQRLDESDLQ-IRRLTLCADSKGAVFDVPSELADKFTALSENQESGPTPIA 664
Query: 585 LEVLKQLPPL 594
+ V ++LP L
Sbjct: 665 ITVCEELPEL 674
>gi|302848249|ref|XP_002955657.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
gi|300259066|gb|EFJ43297.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
Length = 727
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 268/646 (41%), Positives = 367/646 (56%), Gaps = 89/646 (13%)
Query: 35 TEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEP- 93
T+ ++ KK KK + +K E E +E + EP+ K+ KK++ VEP
Sbjct: 7 TDDAAKVKKPKKDAADNDKKTKRKREAEPEAEPLTV--EPLATAGTKKSKKQQDEGVEPP 64
Query: 94 ------EAGVEEQERGESEHPNA----------------VSRFRISVPLREKLKSKGIES 131
A + E + P A + RF +S ++ L+S+ IES
Sbjct: 65 LKKAKRSAKASASDDTEPQPPAAAHQAPITAATPASELGLDRFPLSEQVKSMLRSQNIES 124
Query: 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY------G 185
LFPIQAMT + L G D+VGRARTG GKTLAFVLPI+E + A ++ G G
Sbjct: 125 LFPIQAMTLEPGLAGVDVVGRARTGCGKTLAFVLPIVERIL-----AEQRKGVAAGRVAG 179
Query: 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
R P +VL PTRELAKQV E F G A L + C+YGG PY QE L KG+DVV+GTP
Sbjct: 180 RLPICIVLAPTRELAKQVQEVFANVGKAANLYTLCVYGGTPYDGQETALSKGVDVVVGTP 239
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE-DANKVQTLLFSATL 304
GRIKD +ERG + LS+++FRVLDE D+ML MGF+EDVE IL E + +QTLLFSATL
Sbjct: 240 GRIKDLLERGTLKLSNIRFRVLDEVDQMLAMGFIEDVETILKAGEQQPDSIQTLLFSATL 299
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P WVK ++ +FL+ + +DLVG++KM+A+ VRH++LPCS R+ ++ D+I Y +GG
Sbjct: 300 PKWVKGLTQRFLRPGHRFMDLVGDDKMQAAVTVRHLMLPCSYPQRAGLLKDLITSYGAGG 359
Query: 365 RTIIFTETKESASQLADLL---PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
RTIIFT++K+ A++L+ +L GA+ALHGD+ QS RE TL GFR G+F L+AT+VAAR
Sbjct: 360 RTIIFTDSKKEAAELSVVLGDSLGAQALHGDLAQSMREQTLDGFRKGRFPVLIATDVAAR 419
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE------------------------- 456
GLD++ ++L++ +PP D E YIHRSGRTGRAG
Sbjct: 420 GLDVSGIELVLMVDPPADWETYIHRSGRTGRAGSSGTCITLVTKKMEYMVAIIEGRAGMK 479
Query: 457 ---------------AAE----TITQVSDSVIPAFKSAAEELLNNS---GLSAAELLAKA 494
AAE +++V +V+ F+ AA L G AE LA+A
Sbjct: 480 FERIGAPQPADMARIAAERSLALLSEVDPAVVEHFRDAANRHLEEQAADGRDPAEALARA 539
Query: 495 LAKAVGYTEIKSRSLLSSLEDHVTVVLEA-GKPIYTPSFAFGVLRRFLPEEKVELVKGMA 553
LAK GY E+K+RSLL++ +D T++ I +PS + V F + VK M
Sbjct: 540 LAKITGYKEMKARSLLTAHDDCTTLLFTCEDHTIESPS-SVSVCLCFSVVCNPQQVKRMT 598
Query: 554 LTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQ 599
+TAD GAVFDVP F A+ +S+ + LP L+ R +
Sbjct: 599 VTADSKGAVFDVPSELAQTFLDAAEGKRGISVTLPSSLPELKPRPE 644
>gi|255081336|ref|XP_002507890.1| predicted protein [Micromonas sp. RCC299]
gi|226523166|gb|ACO69148.1| predicted protein [Micromonas sp. RCC299]
Length = 631
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 253/552 (45%), Positives = 333/552 (60%), Gaps = 62/552 (11%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
N VS F +S + +L++KGI SL+ IQA F +LDG DLVGRARTG GKTLAFVLPI+
Sbjct: 26 NHVSNFNLSKEVCARLETKGITSLYSIQAQCFQPILDGKDLVGRARTGCGKTLAFVLPIV 85
Query: 169 ESLT-NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
E + P AS + GR P V +L PTRELAKQVH DF G A GLTS C+YGGAPY
Sbjct: 86 EVINRENPMPASGRRVQGRRPVVALLAPTRELAKQVHSDFQHIGQAFGLTSICVYGGAPY 145
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G D+VIGTPGR+KDH++R + L+FRVLDEADEML MGFVED+E IL
Sbjct: 146 GEQERALRQGCDIVIGTPGRVKDHLDRKTLSFEKLRFRVLDEADEMLNMGFVEDIETILN 205
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+D +QT+LFSATLP WV IS +FL TIDLVG+EK KAS +V+H+++ C S
Sbjct: 206 HAKDNANLQTVLFSATLPKWVADISKRFLVPGYTTIDLVGDEKQKASGSVQHMLINCQWS 265
Query: 348 ARSQVIPDIIRCYSSG-GRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVT 401
R+ ++ D+IR G GR I+F +TK +L + L GA+ALHGD+ QSQREV
Sbjct: 266 ERTDLVCDLIRAKVPGDGRVIVFCDTKRDCGELQEALQKELEKGAKALHGDVNQSQREVV 325
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSG------------- 448
L GFR KF TLVAT+VAARGLDI+ V+L++QCEPP++ E YIHRSG
Sbjct: 326 LDGFRKNKFQTLVATDVAARGLDISGVELVVQCEPPKEAETYIHRSGRTGRGGATGICVT 385
Query: 449 --------------RTG-----RAG-VEAAETITQVSDSVIP-----------AFKSAAE 477
R G R G + AE + + VI F AA
Sbjct: 386 LCTPRNEWAIPNIERKGGFKFVRIGPPQPAEMVAAAAKIVIQQVRAVHKGAAKMFMDAAR 445
Query: 478 ELL------NNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGK--PIYT 529
ELL ++ G E+LA ALAK G+ E++ RSLL+S T++ AG I T
Sbjct: 446 ELLAEGAGEHDEGADPTEMLAAALAKLAGHGELRQRSLLTSHTGQTTLLFTAGNNTEIRT 505
Query: 530 PSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADN--AANVSLEV 587
P++ + L++ + E+ ++L + + L AD GAVFDVP + F + +D +++ V
Sbjct: 506 PTYVWNFLKQRMDEKDIQL-RRLTLQADSKGAVFDVPSELQEKFLALSDTKGPTPITISV 564
Query: 588 LKQLPPLQEREQ 599
++LP L + Q
Sbjct: 565 CEELPELVMKPQ 576
>gi|196004420|ref|XP_002112077.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
gi|190585976|gb|EDV26044.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
Length = 633
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 254/616 (41%), Positives = 336/616 (54%), Gaps = 63/616 (10%)
Query: 82 EKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFD 141
KK + K ++ + E + G E +FRIS + + LK +GI LFPIQA TFD
Sbjct: 25 HKKHRSSQKSNGDSELPEHDSGSMEEKGDFKKFRISSAIADSLKERGITYLFPIQAQTFD 84
Query: 142 MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201
V DG D++G+ARTG GKTL+F LPI E L K + R P VLVL PTRELA
Sbjct: 85 YVYDGQDVIGQARTGTGKTLSFALPITEKLI----KKKRSDDKIRPPKVLVLAPTRELAI 140
Query: 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSS 261
Q+ +F G+ L C+YGG PY QE L+ GID+VIGTPGRIKDHI+R N+ LS
Sbjct: 141 QITSEFKALSGS--LKVVCIYGGVPYAEQENHLRNGIDIVIGTPGRIKDHIDRKNLVLSK 198
Query: 262 LKFRVLDEADEMLRMGFVEDVELILGK--VEDANKVQTLLFSATLPSWVKHISTKFLKSD 319
LK VLDE D ML MGF + VE IL V+D + QTLLFSAT+P W K++KSD
Sbjct: 199 LKHVVLDEVDRMLDMGFCDIVEEILSHAYVKDRHP-QTLLFSATMPKWALKTIDKYMKSD 257
Query: 320 KKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQ 378
KK +DL+G + ++ ST V H V+ C R+ I D+++ Y RTIIF+ TK+ A++
Sbjct: 258 KKIVDLIGKDALRTSTTVEHKVISCPYHERAATIGDLVKVYGGDHARTIIFSPTKKEANE 317
Query: 379 LA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE 435
LA L + LHGDIQQ+QREVTL GFR G F LVAT+VAARGLDI +V L+IQCE
Sbjct: 318 LALSSVLKQEVQVLHGDIQQAQREVTLKGFREGNFPCLVATDVAARGLDIPEVDLVIQCE 377
Query: 436 PPRDVEAYIHRSGRTGRA---GV------------------------------------- 455
PP+D + YIHRSGRTGRA G+
Sbjct: 378 PPKDADTYIHRSGRTGRANRTGICITFYKPTHQDRIKSIESEAGINFCRIGAPQLGDIIQ 437
Query: 456 ----EAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLS 511
+AA+++ V V+ F+S A E++ G A + L+ ALA GYT I +RSLLS
Sbjct: 438 ATSRDAAKSLDSVPAEVLVHFESIASEIIETKG--AVKALSAALAHISGYTSITNRSLLS 495
Query: 512 SLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLD 571
S E T V+ + + S+ + V+ L V+GM + D G VFD+P D
Sbjct: 496 SREGFTTYVMRSQWEFRSVSYMWKVIEVELSSAIKAEVRGMRMCKDKKGVVFDLPSNLCD 555
Query: 572 LFRSGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRGGFGGRGGNRFSGGRGGGFSDR 631
+ NA N+ L++ LP L + S F R GN ++ F+
Sbjct: 556 TVKENWKNARNIELDIADALPELLDTSSS---FEKPSHFNNNSRFGNNYNRHERRPFNQM 612
Query: 632 RNDRFSGGFRGSKGRG 647
+ ++ G RG+ RG
Sbjct: 613 ASRNYTNG-RGNNPRG 627
>gi|422294259|gb|EKU21559.1| dead deah box rna [Nannochloropsis gaditana CCMP526]
Length = 737
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 256/635 (40%), Positives = 357/635 (56%), Gaps = 85/635 (13%)
Query: 23 ALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKE 82
AL D A++ E+ S KK K K S + + E+++++ E V ++K
Sbjct: 67 ALTDSSAQSASVVEEDSPNKKRKIKGSQEGADGAGGEKKKKKRAKPEESDAAVKDSAKKT 126
Query: 83 KKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDM 142
KK K +A +A PNA+S F+IS R +L+++GI+SLFPIQ+MT
Sbjct: 127 KKCKTQASETADA-----------DPNALSNFKISQATRTRLEARGIKSLFPIQSMTLQK 175
Query: 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202
+LDG DL+GRARTG GKTLAF LP++E + + ++ G P VLVL PTRELAKQ
Sbjct: 176 ILDGCDLIGRARTGCGKTLAFALPVVELIGD------EREERGAPPKVLVLAPTRELAKQ 229
Query: 203 VHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262
V ++F+ A L S C+YGGAPY QE L++G+ VV+GTPGRI DHIERG + LS L
Sbjct: 230 VADEFEACAPAT-LRSVCIYGGAPYRPQEEALRRGVQVVVGTPGRILDHIERGTLKLSGL 288
Query: 263 KFRVLDEADEMLRMGFVEDVELILGKV--EDANKVQTLLFSATLPSWVKHISTKFLKSDK 320
+F +LDEAD ML MGF +D++ + + + + Q LLFSATLP WV+ ++ ++++ DK
Sbjct: 289 RFLILDEADSMLDMGFKDDIQKVCDAMGQDSHQRRQVLLFSATLPPWVQKVAQQYMRKDK 348
Query: 321 KT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY--SSGGRTIIFTETKESAS 377
+DLV E KAST+VRH+ +PC S+ + D + Y S+ RTI+F ETK+ +
Sbjct: 349 LVQVDLVQGEDAKASTDVRHVAIPCHWSSMPSTVADCLAVYGGSNKARTIVFCETKKECN 408
Query: 378 QLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQC 434
+L + ALHGDI Q+QRE TL FR G+ LVAT+VAARGLD+ V L++Q
Sbjct: 409 ELVVNPVIKTECAALHGDIPQAQRETTLKAFREGRVRVLVATDVAARGLDMT-VDLVVQN 467
Query: 435 EPP------RDVEAYIHRSGRTGRAG---------------------------------- 454
+PP DVE Y+HRSGRTGRAG
Sbjct: 468 KPPVTASGRTDVETYVHRSGRTGRAGRKGICVTLFSPKYRFAVKEIEGAVGNKFEWAGAP 527
Query: 455 ----------VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYT-E 503
+ A E + V D V P F++AA +L+ G A A A G+T E
Sbjct: 528 QPADIVAASALAAMEDVANVDDKVFPLFQAAAAKLVEEMGAEEALAAALAC--LTGHTKE 585
Query: 504 IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVF 563
++SRSLLS+ +D+VT +A +PI + + + LR LP+E E ++GM LTAD GAVF
Sbjct: 586 LRSRSLLSNSDDYVTCQFQADQPIMSTGYVWTALRNALPQEVTEDIRGMQLTADNTGAVF 645
Query: 564 DVPVADLDLFRSGADNAA--NVSLEVLKQLPPLQE 596
DVP ++ A N L V K LP +++
Sbjct: 646 DVPS---KYMKTSMKRAVEENPFLTVCKTLPEIKQ 677
>gi|281346961|gb|EFB22545.1| hypothetical protein PANDA_001614 [Ailuropoda melanoleuca]
Length = 765
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 263/618 (42%), Positives = 348/618 (56%), Gaps = 72/618 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS P + LK++G+ LFPIQA TF V G D
Sbjct: 146 SELEQEIPVEQKE-------GAFSNFPISEPTIKLLKARGVTFLFPIQAKTFHHVYSGKD 198
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV DF
Sbjct: 199 LIAQARTGTGKTFSFAIPLIEKL-QGEMQDRKR---GRAPQVLVLAPTRELANQVSRDFS 254
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VL
Sbjct: 255 DI---TRKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVL 311
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 312 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVD 371
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 372 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNV 431
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DV
Sbjct: 432 SIKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDV 491
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 492 ESYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 551
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 552 AIRLLDSVPPTAVSHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSDAGF 609
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L + S+A+ L+ L E+ VKGM G FDVP A + +
Sbjct: 610 VTMILRCSIEMPNISYAWKELKEQLSEDIDSKVKGMVFLKGKQGVCFDVPTAAVTEIQEK 669
Query: 577 ADNAANVSLEVLKQLPPLQ-EREQSRGRFGG--GGRGGFGGRGGNRFSGGRGGGFSDRRN 633
++ L V + P L+ RE RG G G RG G R G+RF G R G S R
Sbjct: 670 WHDSRRWQLSVATEQPELEGPREGFRGFRGQREGSRGFRGQREGSRFRGQREGNRSFRGQ 729
Query: 634 DRFSGGFRGSKGRGGGNR 651
+ GFRG + GGGN+
Sbjct: 730 REGNRGFRGQRS-GGGNK 746
>gi|301755880|ref|XP_002913778.1| PREDICTED: nucleolar RNA helicase 2-like [Ailuropoda melanoleuca]
Length = 794
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 263/618 (42%), Positives = 348/618 (56%), Gaps = 72/618 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS P + LK++G+ LFPIQA TF V G D
Sbjct: 175 SELEQEIPVEQKE-------GAFSNFPISEPTIKLLKARGVTFLFPIQAKTFHHVYSGKD 227
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV DF
Sbjct: 228 LIAQARTGTGKTFSFAIPLIEKL-QGEMQDRKR---GRAPQVLVLAPTRELANQVSRDFS 283
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VL
Sbjct: 284 DI---TRKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVL 340
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 341 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVD 400
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 401 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNV 460
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DV
Sbjct: 461 SIKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDV 520
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 521 ESYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 580
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 581 AIRLLDSVPPTAVSHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSDAGF 638
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L + S+A+ L+ L E+ VKGM G FDVP A + +
Sbjct: 639 VTMILRCSIEMPNISYAWKELKEQLSEDIDSKVKGMVFLKGKQGVCFDVPTAAVTEIQEK 698
Query: 577 ADNAANVSLEVLKQLPPLQ-EREQSRGRFGG--GGRGGFGGRGGNRFSGGRGGGFSDRRN 633
++ L V + P L+ RE RG G G RG G R G+RF G R G S R
Sbjct: 699 WHDSRRWQLSVATEQPELEGPREGFRGFRGQREGSRGFRGQREGSRFRGQREGNRSFRGQ 758
Query: 634 DRFSGGFRGSKGRGGGNR 651
+ GFRG + GGGN+
Sbjct: 759 REGNRGFRGQRS-GGGNK 775
>gi|320164192|gb|EFW41091.1| nucleolar RNA helicase 2 [Capsaspora owczarzaki ATCC 30864]
Length = 793
Score = 407 bits (1046), Expect = e-110, Method: Compositional matrix adjust.
Identities = 234/555 (42%), Positives = 317/555 (57%), Gaps = 70/555 (12%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+ F +S L ++GI +LFPIQA T+ + +G D+V +ARTG GKTL+F LP++E
Sbjct: 196 ALKNFGVSATSIANLHAQGIRTLFPIQAQTYHPIFEGKDIVAQARTGSGKTLSFALPVIE 255
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
L P ++ GRAP+VLV+ PTRELA QVH F+ A L S C+YGG Y
Sbjct: 256 RLLKNP-----RSEKGRAPAVLVMAPTRELASQVHRVFESV--APQLASICVYGGVEYGP 308
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG-- 287
QE ++KG+DVV+GTPGR+ DH RGN+ L S+ +LDEAD ML +GF E+V+ I+
Sbjct: 309 QELAMRKGLDVVVGTPGRLIDHYNRGNLSLRSIDVMILDEADRMLEVGFQENVDEIMAGL 368
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+ DA K + LLFSAT+P+WVK ++ K+ + DK +DLV + ST ++H+ + C
Sbjct: 369 PIGDA-KPRILLFSATMPTWVKALTKKYQREDKVMVDLVSGTDQQTSTTIQHLAIRCPWQ 427
Query: 348 ARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLPG-----ARALHGDIQQSQREVT 401
R+ I D++R YS S GR ++F TKE A+ LA L G LHGDI Q QRE+T
Sbjct: 428 ERANAIGDVVRVYSGSHGRCMVFASTKEEANDLA--LNGRIAGETHVLHGDIAQKQREIT 485
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
LAGFRSGKF LVAT+VAARGLDI +V+L+IQ EPP DVE YIHR+GRTGRAG
Sbjct: 486 LAGFRSGKFRCLVATDVAARGLDIPEVELVIQTEPPIDVETYIHRAGRTGRAGKSGTCIL 545
Query: 455 -------------------------------------VEAAETITQVSDSVIPAFKSAAE 477
+AA ++ +VS +V P F AAE
Sbjct: 546 FYKPQQESLVRRIEGKARMAFKRIGPPQPQDIVSASANDAARSLAKVSPAVYPLFHQAAE 605
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
E++ +G A + L+ ALA G EIK+RSLLSS+E +VT ++ + PSF + ++
Sbjct: 606 EVIARAG--AVDALSAALAVISGVFEIKTRSLLSSMEGYVTFCIQLTYDVRGPSFFWSII 663
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQER 597
R LP ++GM L D GA FD P +D + + + V LP L E
Sbjct: 664 DRHLPPNVRPALRGMRLFKDHTGAAFDCPSDVVDTIKEHWVDQPTTKIYVATTLPDLVET 723
Query: 598 EQSRGRFGGGGRGGF 612
+ GGG F
Sbjct: 724 D------GGGNASSF 732
>gi|355782883|gb|EHH64804.1| hypothetical protein EGM_18115 [Macaca fascicularis]
Length = 783
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 255/619 (41%), Positives = 340/619 (54%), Gaps = 64/619 (10%)
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS 147
KA E G +QE + A S F IS + LK +G+ LFPIQA TF V G
Sbjct: 165 KAASEESNGDIDQEISVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGK 224
Query: 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207
DL+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL PTRELA QV +DF
Sbjct: 225 DLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRPPQVLVLAPTRELANQVSKDF 280
Query: 208 -DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK V
Sbjct: 281 SDI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQSGKLDLTKLKHVV 337
Query: 267 LDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
LDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +
Sbjct: 338 LDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQV 397
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD- 381
DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 398 DLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQN 457
Query: 382 --LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+D
Sbjct: 458 SAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKD 517
Query: 440 VEAYIHRSGRTGRAG--------------------------------VEAAETITQVS-- 465
VE+YIHRSGRTGRAG V +A I + S
Sbjct: 518 VESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSK 577
Query: 466 ------DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLED 515
DSV P FK +AE+L+ G A E LA LA G + RSL++S
Sbjct: 578 DAIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAATLAHISGAMSVDQRSLINSNVG 635
Query: 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRS 575
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 636 FVTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQE 695
Query: 576 GADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRR 632
++ L V + P L+ + G F G G RG G R GNR G+ G R
Sbjct: 696 KWHDSRRWQLSVATEQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPR 755
Query: 633 NDRFSGGFRGSKGRGGGNR 651
R GG + ++ + G +
Sbjct: 756 GQRSGGGNKSNRSQNKGQK 774
>gi|363735177|ref|XP_421574.3| PREDICTED: nucleolar RNA helicase 2-like [Gallus gallus]
Length = 760
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 265/646 (41%), Positives = 360/646 (55%), Gaps = 81/646 (12%)
Query: 42 KKSKKKESSKKRKESEIEEE--EERSETSSELGEPVNLKSEKEKKKKK------------ 87
KK K++E K+R ++E E+ EE L +P + K K+ +
Sbjct: 111 KKPKRREKLKRRGKAEGEQSAPEESGPGDGGLLQPPSAKKAKKSAEGNGAAEQNGSAPAS 170
Query: 88 ---KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL 144
+A E G + +E E A S F +S LK++G++ LFP+Q TF +
Sbjct: 171 GHGEAPAAEEPGSDAEELTEEAREGAFSNFPLSPSTINLLKARGVKYLFPVQVKTFQPIY 230
Query: 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204
DG DL+ +ARTG GKT +F +P+ E L + S+ GR+P VLVL+PTRELA QV
Sbjct: 231 DGKDLIAQARTGTGKTFSFAIPLTEKLQS----VSQDEKRGRSPKVLVLVPTRELAIQVA 286
Query: 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
+DF L+ C YGG PY AQ LK GID+++GTPGRIKDHI+ +DLS++K
Sbjct: 287 KDFKNL--TRKLSVACFYGGTPYKAQFDLLKNGIDILVGTPGRIKDHIQNSKLDLSNVKH 344
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D ML MGF E VE ILG K N QTLLFSAT P WV ++ K++K + +
Sbjct: 345 VVLDEVDHMLDMGFAEQVEEILGFAYKKGSENSPQTLLFSATCPRWVYDVAKKYMKGEYE 404
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DL+G + + +T V H+ + C SS R++V+ DII+ YS S GRTI+F ETK+ A++LA
Sbjct: 405 QVDLIGKKTQRTATTVEHLAIQCRSSQRAEVLGDIIQVYSGSHGRTIVFCETKKEANELA 464
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
L A++LHGDI Q QREVTL GFR+G F L+ATNVAARGLDI +V L+IQC PP
Sbjct: 465 LNSALKQEAQSLHGDIPQKQREVTLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPP 524
Query: 438 RDVEAYIHRSGRTGRA--------------------------------GVEAAETITQVS 465
+DV++YIHRSGRTGRA GV +A I + S
Sbjct: 525 KDVDSYIHRSGRTGRAGRTGICICFYQRKEEDLLKQVEQKAGITFRRIGVPSATDIIKAS 584
Query: 466 --------DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSL 513
D+V P+ F+ +A EL+ G A + LA ALA G + I+ RSLL+S
Sbjct: 585 SDDAKKCLDAVPPSAIDYFRQSARELIEEKG--AVDALAAALAHISGASSIQQRSLLNST 642
Query: 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLF 573
VT+VL+ + + S+A+ L+ L EE + M G FD+PV +L
Sbjct: 643 AGFVTMVLQCSIEMRSMSYAWRGLKEQLGEEIDGKISAMRFLKGKTGVCFDIPVDELSHI 702
Query: 574 RSGADNAANVSLEVLKQLPPLQEREQ--SRG--RFGGGGRGG-FGG 614
+ + L V K+LP L+E+ Q SRG RFGG + G FGG
Sbjct: 703 QEQWRDTRRWQLAVAKELPELEEQPQDASRGPPRFGGFKKNGRFGG 748
>gi|74211590|dbj|BAE26522.1| unnamed protein product [Mus musculus]
Length = 851
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 253/593 (42%), Positives = 334/593 (56%), Gaps = 67/593 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 318
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 319 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 371
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 372 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 431
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 432 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 491
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 492 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 551
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG
Sbjct: 552 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 611
Query: 455 -------------------------VEAAETITQVS--------DSVIPA----FKSAAE 477
V +A I + S DSV P FK +AE
Sbjct: 612 FYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 671
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
+L+ G E LA ALA G T + RSL++S VT++L + S+A+ L
Sbjct: 672 KLIEEKG--DVEALAAALAHISGATSVDQRSLINSQAGFVTMILRCSIEMPNISYAWKEL 729
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQ-E 596
+ L E VKGM G FDV + + ++ L V + P L+
Sbjct: 730 KEQLGESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRRWQLTVATEQPELEGP 789
Query: 597 REQSRGRFG--GGGRGGF-GGRGGNR-FSG-GRGGGFSDRRNDRFSGGFRGSK 644
+ RGR G G RG F G RGG+R F G G+ GG + R R GG RG K
Sbjct: 790 PDGYRGRMGQRDGSRGAFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRGQK 842
>gi|50659095|ref|NP_004719.2| nucleolar RNA helicase 2 isoform 1 [Homo sapiens]
gi|76803555|sp|Q9NR30.5|DDX21_HUMAN RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|31455230|gb|AAH08071.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
gi|119574691|gb|EAW54306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Homo
sapiens]
gi|261858100|dbj|BAI45572.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
Length = 783
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 257/618 (41%), Positives = 345/618 (55%), Gaps = 71/618 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 173 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 225
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 226 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 281
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 282 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 338
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 339 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 398
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 399 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 458
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 459 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 518
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 519 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 578
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 579 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVGF 636
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 637 VTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEK 696
Query: 577 ADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRRN 633
++ L V + P L+ + G F G G RG G R GNR G+ G R
Sbjct: 697 WHDSRRWQLSVATEQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRG 756
Query: 634 DRFSGGFRGSKGRGGGNR 651
R GG + ++ + G +
Sbjct: 757 QRSGGGNKSNRSQNKGQK 774
>gi|114630811|ref|XP_507825.2| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan troglodytes]
gi|410222082|gb|JAA08260.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252906|gb|JAA14420.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252908|gb|JAA14421.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252910|gb|JAA14422.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410292262|gb|JAA24731.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
Length = 783
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 257/618 (41%), Positives = 345/618 (55%), Gaps = 71/618 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 173 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 225
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 226 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 281
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 282 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 338
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 339 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 398
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 399 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 458
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 459 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 518
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 519 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 578
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 579 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVGF 636
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 637 VTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEK 696
Query: 577 ADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRRN 633
++ L V + P L+ + G F G G RG G R GNR G+ G R
Sbjct: 697 WHDSRRWQLSVATEQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRG 756
Query: 634 DRFSGGFRGSKGRGGGNR 651
R GG + ++ + G +
Sbjct: 757 QRSGGGNKSNRSQNKGQK 774
>gi|397489922|ref|XP_003815960.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan paniscus]
Length = 783
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 257/618 (41%), Positives = 345/618 (55%), Gaps = 71/618 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 173 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 225
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 226 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 281
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 282 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 338
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 339 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 398
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 399 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 458
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 459 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 518
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 519 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 578
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 579 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVGF 636
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 637 VTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEK 696
Query: 577 ADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRRN 633
++ L V + P L+ + G F G G RG G R GNR G+ G R
Sbjct: 697 WHDSRRWQLSVATEQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRG 756
Query: 634 DRFSGGFRGSKGRGGGNR 651
R GG + ++ + G +
Sbjct: 757 QRSGGGNKSNRSQNKGQK 774
>gi|426364956|ref|XP_004049557.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Gorilla gorilla
gorilla]
Length = 783
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 257/618 (41%), Positives = 345/618 (55%), Gaps = 71/618 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 173 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 225
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 226 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 281
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 282 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 338
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 339 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 398
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 399 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 458
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 459 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 518
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 519 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 578
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 579 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVGF 636
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 637 VTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMIFLKGKLGVCFDVPTASVTEIQEK 696
Query: 577 ADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRRN 633
++ L V + P L+ + G F G G RG G R GNR G+ G R
Sbjct: 697 WHDSRRWQLSVATEQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRG 756
Query: 634 DRFSGGFRGSKGRGGGNR 651
R GG + ++ + G +
Sbjct: 757 QRSGGGNKSNRSQNKGQK 774
>gi|1230564|gb|AAB02546.1| Gu protein, partial [Homo sapiens]
Length = 801
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 257/618 (41%), Positives = 345/618 (55%), Gaps = 71/618 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 191 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 243
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 244 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 299
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 300 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 356
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 357 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 416
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 417 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 476
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 477 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 536
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 537 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 596
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 597 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVGF 654
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 655 VTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEK 714
Query: 577 ADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRRN 633
++ L V + P L+ + G F G G RG G R GNR G+ G R
Sbjct: 715 WHDSRRWQLSVATEQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRG 774
Query: 634 DRFSGGFRGSKGRGGGNR 651
R GG + ++ + G +
Sbjct: 775 QRSGGGNKSNRSQNKGQK 792
>gi|326429375|gb|EGD74945.1| DEAD box polypeptide 47 isoform 1 [Salpingoeca sp. ATCC 50818]
Length = 711
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 249/621 (40%), Positives = 348/621 (56%), Gaps = 67/621 (10%)
Query: 46 KKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGES 105
++ S+ + + + ++E E S + + + ++ KK K K + +E E +
Sbjct: 54 RRHSTDEGESAVSDQESEHSAINGAAHDDSDAENHPTKKAKSTVKDDDSDDQDE-EMSQV 112
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
+ A+ F IS R L+ G + LFPIQA TFD+++ G+D+ G+ARTG+GKTL+F L
Sbjct: 113 QKEGALDNFDISDKSRNNLEKHGYKYLFPIQAKTFDLIMAGNDIFGKARTGEGKTLSFAL 172
Query: 166 PILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225
P++E L AS T GR P VLV+ PTRELA QV +F G + L S C+YGG
Sbjct: 173 PVIEKLL-----ASPDTTRGRRPRVLVMAPTRELASQVWREFQKVGPS--LASTCIYGGT 225
Query: 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285
Y Q + G+DVV+GTPGR+ DH+E G + L++L++ VLDEAD ML +GFV+ VE +
Sbjct: 226 DYEPQRRAFRNGLDVVVGTPGRLMDHMESGALQLTNLQYLVLDEADRMLEVGFVDTVEKM 285
Query: 286 LG-KVEDA-NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
L VE A K Q +LFSAT+P ++K TK++ + K +D VG E + ST V+H+ L
Sbjct: 286 LSMAVEQAGQKPQMILFSATMPPFIKSTLTKYM-PEHKVVDTVGKEMNRTSTGVQHLALR 344
Query: 344 CSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQRE 399
C AR+ VI D+++ YS + GRT+IFT+TK A++LA L + LHGDI Q QRE
Sbjct: 345 CPWQARNTVIADVVQVYSGAHGRTMIFTQTKRDANELALNDTLKQEVQVLHGDIAQKQRE 404
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG----- 454
++L FR GK LVAT+VAARG+DI +V L++QCEPP+DVE+YIHRSGRTGRAG
Sbjct: 405 LSLQCFRDGKVRCLVATDVAARGIDIPEVDLVVQCEPPKDVESYIHRSGRTGRAGRKGTC 464
Query: 455 ---------------------------------------VEAAETITQVSDSVIPAFKSA 475
+A + V++ V+ F+ A
Sbjct: 465 ICFYKPNQEQQLREVERRAGISFTRIGAPQPADIIKASARDATRFLDSVTNDVLVYFQEA 524
Query: 476 AEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFG 535
A+ + G +A + LA ALA G T IK RSLLSSLE L I +F F
Sbjct: 525 AQAFIEEKG-NAVDALAAALAHISGSTTIKGRSLLSSLEGFTAFHLTTDTEIRGKAFVFS 583
Query: 536 VLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQ 595
VL LP E E V+G+ L D GAVFD+P + + + + N+ L V ++LP LQ
Sbjct: 584 VLGHHLPREVREAVRGIRLQKDRMGAVFDLPSSMMKTIKDNWSDTPNLRLTVAEKLPELQ 643
Query: 596 EREQSRGRFGGGGRGGFGGRG 616
E + G GRGGF G
Sbjct: 644 EEQ-------GFGRGGFRNNG 657
>gi|397489924|ref|XP_003815961.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan paniscus]
Length = 715
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 257/618 (41%), Positives = 345/618 (55%), Gaps = 71/618 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 105 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 157
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 158 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 213
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 214 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 270
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 271 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 330
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 331 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 390
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 391 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 450
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 451 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 510
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 511 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVGF 568
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 569 VTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEK 628
Query: 577 ADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRRN 633
++ L V + P L+ + G F G G RG G R GNR G+ G R
Sbjct: 629 WHDSRRWQLSVATEQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRG 688
Query: 634 DRFSGGFRGSKGRGGGNR 651
R GG + ++ + G +
Sbjct: 689 QRSGGGNKSNRSQNKGQK 706
>gi|379317177|ref|NP_001243839.1| nucleolar RNA helicase 2 isoform 2 [Homo sapiens]
gi|51476855|emb|CAH18395.1| hypothetical protein [Homo sapiens]
gi|119574692|gb|EAW54307.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo
sapiens]
gi|123993911|gb|ABM84557.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
gi|124000685|gb|ABM87851.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
gi|189054973|dbj|BAG37957.1| unnamed protein product [Homo sapiens]
Length = 715
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 257/618 (41%), Positives = 345/618 (55%), Gaps = 71/618 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 105 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 157
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 158 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 213
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 214 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 270
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 271 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 330
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 331 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 390
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 391 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 450
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 451 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 510
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 511 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVGF 568
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 569 VTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEK 628
Query: 577 ADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRRN 633
++ L V + P L+ + G F G G RG G R GNR G+ G R
Sbjct: 629 WHDSRRWQLSVATEQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRG 688
Query: 634 DRFSGGFRGSKGRGGGNR 651
R GG + ++ + G +
Sbjct: 689 QRSGGGNKSNRSQNKGQK 706
>gi|332834196|ref|XP_003312635.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan troglodytes]
Length = 715
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 257/618 (41%), Positives = 345/618 (55%), Gaps = 71/618 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 105 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 157
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 158 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 213
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 214 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 270
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 271 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 330
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 331 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 390
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 391 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 450
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 451 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 510
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 511 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVGF 568
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 569 VTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEK 628
Query: 577 ADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRRN 633
++ L V + P L+ + G F G G RG G R GNR G+ G R
Sbjct: 629 WHDSRRWQLSVATEQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRG 688
Query: 634 DRFSGGFRGSKGRGGGNR 651
R GG + ++ + G +
Sbjct: 689 QRSGGGNKSNRSQNKGQK 706
>gi|426364958|ref|XP_004049558.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Gorilla gorilla
gorilla]
Length = 715
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 257/618 (41%), Positives = 345/618 (55%), Gaps = 71/618 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 105 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 157
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 158 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 213
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 214 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 270
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 271 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 330
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 331 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 390
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 391 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 450
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 451 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 510
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 511 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVGF 568
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 569 VTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMIFLKGKLGVCFDVPTASVTEIQEK 628
Query: 577 ADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRRN 633
++ L V + P L+ + G F G G RG G R GNR G+ G R
Sbjct: 629 WHDSRRWQLSVATEQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRG 688
Query: 634 DRFSGGFRGSKGRGGGNR 651
R GG + ++ + G +
Sbjct: 689 QRSGGGNKSNRSQNKGQK 706
>gi|297686801|ref|XP_002820927.1| PREDICTED: nucleolar RNA helicase 2 [Pongo abelii]
Length = 783
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 256/618 (41%), Positives = 344/618 (55%), Gaps = 71/618 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 173 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 225
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL PTRELA QV +DF
Sbjct: 226 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRPPQVLVLAPTRELANQVSKDFS 281
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 282 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 338
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 339 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 398
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 399 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 458
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 459 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 518
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 519 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 578
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 579 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVGF 636
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 637 VTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEK 696
Query: 577 ADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRRN 633
++ L V + P L+ + G F G G RG G R GNR G+ G R
Sbjct: 697 WHDSRRWQLSVATEQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRG 756
Query: 634 DRFSGGFRGSKGRGGGNR 651
R GG + ++ + G +
Sbjct: 757 QRSGGGNKSNRSQNKGQK 774
>gi|11890755|gb|AAF78930.2|AAF78930 RNA helicase II/Gu protein [Homo sapiens]
Length = 715
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 256/618 (41%), Positives = 344/618 (55%), Gaps = 71/618 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 105 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 157
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTREL QV +DF
Sbjct: 158 LIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELCNQVSKDFS 213
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 214 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 270
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 271 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 330
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 331 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 390
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 391 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 450
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 451 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 510
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 511 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVGF 568
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 569 VTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEK 628
Query: 577 ADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRRN 633
++ L V + P L+ + G F G G RG G R GNR G+ G R
Sbjct: 629 WHDSRRWQLSVATEQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRG 688
Query: 634 DRFSGGFRGSKGRGGGNR 651
R GG + ++ + G +
Sbjct: 689 QRSGGGNKSNRSQNKGQK 706
>gi|402880638|ref|XP_003903905.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Papio anubis]
Length = 783
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 263/623 (42%), Positives = 346/623 (55%), Gaps = 82/623 (13%)
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS 147
KA E G +QE + A S F IS + LK +G+ LFPIQA TF V G
Sbjct: 165 KAASEESNGDIDQEISVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGK 224
Query: 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207
DL+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL PTRELA QV +DF
Sbjct: 225 DLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRPPQVLVLAPTRELANQVSKDF 280
Query: 208 -DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK V
Sbjct: 281 SDI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQSGKLDLTKLKHVV 337
Query: 267 LDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
LDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +
Sbjct: 338 LDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQV 397
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD- 381
DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 398 DLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQN 457
Query: 382 --LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+D
Sbjct: 458 SAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKD 517
Query: 440 VEAYIHRSGRTGRAG--------------------------------VEAAETITQVS-- 465
VE+YIHRSGRTGRAG V +A I + S
Sbjct: 518 VESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSK 577
Query: 466 ------DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLED 515
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 578 DAIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVG 635
Query: 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRS 575
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 636 FVTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQE 695
Query: 576 GADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRGGFGGRGGNRFSGGRGGGFSDRR--N 633
++ L V + P L+ G R G+GG G R G R GF +R N
Sbjct: 696 KWHDSRRWQLSVATEQPELE-----------GPREGYGGFRGQR-EGSR--GFRGQRDGN 741
Query: 634 DRFSG---GFRGSKGR--GGGNR 651
RF G G RG +G+ GGGN+
Sbjct: 742 RRFRGQREGSRGPRGQQSGGGNK 764
>gi|402880640|ref|XP_003903906.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Papio anubis]
Length = 715
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 263/623 (42%), Positives = 346/623 (55%), Gaps = 82/623 (13%)
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS 147
KA E G +QE + A S F IS + LK +G+ LFPIQA TF V G
Sbjct: 97 KAASEESNGDIDQEISVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGK 156
Query: 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207
DL+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL PTRELA QV +DF
Sbjct: 157 DLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRPPQVLVLAPTRELANQVSKDF 212
Query: 208 -DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK V
Sbjct: 213 SDI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQSGKLDLTKLKHVV 269
Query: 267 LDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
LDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +
Sbjct: 270 LDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQV 329
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD- 381
DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 330 DLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQN 389
Query: 382 --LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+D
Sbjct: 390 SAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKD 449
Query: 440 VEAYIHRSGRTGRAG--------------------------------VEAAETITQVS-- 465
VE+YIHRSGRTGRAG V +A I + S
Sbjct: 450 VESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSK 509
Query: 466 ------DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLED 515
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 510 DAIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVG 567
Query: 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRS 575
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 568 FVTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQE 627
Query: 576 GADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRGGFGGRGGNRFSGGRGGGFSDRR--N 633
++ L V + P L+ G R G+GG G R G R GF +R N
Sbjct: 628 KWHDSRRWQLSVATEQPELE-----------GPREGYGGFRGQR-EGSR--GFRGQRDGN 673
Query: 634 DRFSG---GFRGSKGR--GGGNR 651
RF G G RG +G+ GGGN+
Sbjct: 674 RRFRGQREGSRGPRGQQSGGGNK 696
>gi|109089499|ref|XP_001110939.1| PREDICTED: nucleolar RNA helicase 2-like isoform 3 [Macaca mulatta]
Length = 783
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 257/619 (41%), Positives = 342/619 (55%), Gaps = 64/619 (10%)
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS 147
KA E G +QE + A S F IS + LK +G+ LFPIQA TF V G
Sbjct: 165 KAASEESNGDIDQEISVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGK 224
Query: 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207
DL+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL PTRELA QV +DF
Sbjct: 225 DLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRPPQVLVLAPTRELANQVSKDF 280
Query: 208 -DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK V
Sbjct: 281 SDI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQSGKLDLTKLKHVV 337
Query: 267 LDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
LDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +
Sbjct: 338 LDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQV 397
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD- 381
DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 398 DLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQN 457
Query: 382 --LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+D
Sbjct: 458 SAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKD 517
Query: 440 VEAYIHRSGRTGRAG--------------------------------VEAAETITQVS-- 465
VE+YIHRSGRTGRAG V +A I + S
Sbjct: 518 VESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSK 577
Query: 466 ------DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLED 515
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 578 DAIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVG 635
Query: 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRS 575
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 636 FVTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQE 695
Query: 576 GADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRR 632
++ L V + P L+ + G F G G RG G R GNR G+ G R
Sbjct: 696 KWHDSRRWQLSVATEQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPR 755
Query: 633 NDRFSGGFRGSKGRGGGNR 651
R GG + ++ + G +
Sbjct: 756 GQRSGGGNKSNRSQNKGQK 774
>gi|380817914|gb|AFE80831.1| nucleolar RNA helicase 2 [Macaca mulatta]
gi|383414353|gb|AFH30390.1| nucleolar RNA helicase 2 [Macaca mulatta]
gi|384943498|gb|AFI35354.1| nucleolar RNA helicase 2 [Macaca mulatta]
Length = 783
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 257/619 (41%), Positives = 342/619 (55%), Gaps = 64/619 (10%)
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS 147
KA E G +QE + A S F IS + LK +G+ LFPIQA TF V G
Sbjct: 165 KAASEESNGDIDQEISVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGK 224
Query: 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207
DL+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL PTRELA QV +DF
Sbjct: 225 DLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRPPQVLVLAPTRELANQVSKDF 280
Query: 208 -DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK V
Sbjct: 281 SDI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQSGKLDLTKLKHVV 337
Query: 267 LDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
LDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +
Sbjct: 338 LDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQV 397
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD- 381
DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 398 DLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQN 457
Query: 382 --LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+D
Sbjct: 458 SAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKD 517
Query: 440 VEAYIHRSGRTGRAG--------------------------------VEAAETITQVS-- 465
VE+YIHRSGRTGRAG V +A I + S
Sbjct: 518 VESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSK 577
Query: 466 ------DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLED 515
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 578 DAIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVG 635
Query: 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRS 575
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 636 FVTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQE 695
Query: 576 GADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRR 632
++ L V + P L+ + G F G G RG G R GNR G+ G R
Sbjct: 696 KWHDSRRWQLSVATEQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPR 755
Query: 633 NDRFSGGFRGSKGRGGGNR 651
R GG + ++ + G +
Sbjct: 756 GQRSGGGNKSNRSQNKGQK 774
>gi|417404608|gb|JAA49048.1| Putative nucleolar rna helicase 2 [Desmodus rotundus]
Length = 785
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 256/618 (41%), Positives = 343/618 (55%), Gaps = 71/618 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 175 SELEQEIPVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKD 227
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 228 LIAQARTGTGKTFSFAIPLIEKLL-GELQERKR---GRAPQVLVLAPTRELANQVSKDFI 283
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VL
Sbjct: 284 DI---TKKLAVACFYGGTPYGGQLERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVL 340
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 341 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 400
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESA---SQLA 380
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A SQ A
Sbjct: 401 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNA 460
Query: 381 DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DV
Sbjct: 461 SIRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDV 520
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 521 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 580
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 581 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSESGF 638
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L EE VKGM G FDV A + +
Sbjct: 639 VTMILKCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKQGVCFDVRTAAVTEIQEK 698
Query: 577 ADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRRN 633
++ L V + P L+ + F G G RG G R GNR G+ G + R
Sbjct: 699 WHDSRRWQLSVATEQPELEGPREGYRNFRGQREGNRGHRGQREGNRNFRGQREGSRNFRG 758
Query: 634 DRFSGGFRGSKGRGGGNR 651
R GG R ++ + G +
Sbjct: 759 QRSGGGSRNNRFQNKGQK 776
>gi|300120547|emb|CBK20101.2| unnamed protein product [Blastocystis hominis]
Length = 553
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 238/551 (43%), Positives = 320/551 (58%), Gaps = 74/551 (13%)
Query: 100 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
+ ESE A+ R+RIS L SKGI LFPIQA++FD + DG DL+GRA TGQGK
Sbjct: 6 MDMAESESLYAMHRYRISPETIGILHSKGITELFPIQALSFDAIYDGKDLIGRAPTGQGK 65
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
TLAF LPI+E + + +++ RAP LVL PTRELA+Q+ E + A L +
Sbjct: 66 TLAFALPIVEKIYKLNLRPPRRS---RAPLCLVLSPTRELAQQIDEQIRMI--APSLRTV 120
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
CL+GGAP+ QEF L++G++ V+GTPGR+ DH+ERG + L L++ +LDEAD ML MGF
Sbjct: 121 CLFGGAPFDPQEFALRRGVEFVVGTPGRVLDHLERGTLQLGELQWFILDEADRMLDMGFS 180
Query: 280 EDVELIL-----------GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
EDVE ++ G +++Q LLFSAT+PSWV+ + TK++ DK T+DLV
Sbjct: 181 EDVEKVVDYAIKSGGETKGPRIVPDRIQVLLFSATIPSWVREVMTKYMHPDKVTVDLV-T 239
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD---LLP 384
EK KAS +VRH+VL C AR++VI D+I Y GR I+F + K+S ++LA L
Sbjct: 240 EKEKASVDVRHLVLRCPWEARAKVIADLIEVYCGVDGRAIVFCDMKKSCNELAGEECLRS 299
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP------R 438
A LHGDI Q RE TL F+ GKF LVAT+VAARGLDI + L+I EPP
Sbjct: 300 IAGVLHGDIPQKTREQTLKDFKDGKFRCLVATDVAARGLDIQGITLVINREPPATRSGVA 359
Query: 439 DVEAYIHRSGRTGRAG--------------------VEAA-------------------- 458
DVE YIHRSGRTGRAG +E A
Sbjct: 360 DVETYIHRSGRTGRAGRKGVCITLSTGFAQEAVLQSIEKAVGNAFTRIGAPQPSDLLKAR 419
Query: 459 -----ETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVG-YTEIKSRSLLSS 512
E I + + +I S AEE+L + A +A+ L AVG + ++K+RS+L+S
Sbjct: 420 AERLVERIGDLDEQLITKMDSLAEEVLAKTSDPRAA-VARCLCLAVGAFGKMKTRSILTS 478
Query: 513 LEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDL 572
E VTV+ ++ P T S+ +G LRR+ PE+ V +K +T D GAVFDVP + L
Sbjct: 479 NEGFVTVMYQSLNPFRTVSYVWGALRRYFPEDVVTSIKANTMTKDERGAVFDVPEEHIQL 538
Query: 573 FRSGADNAANV 583
F+ + AA +
Sbjct: 539 FKDYMEVAARL 549
>gi|16975510|gb|AAD43959.3|AF159131_1 nucleolar RNA helicase II/Gu [Mus musculus]
Length = 851
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 254/593 (42%), Positives = 336/593 (56%), Gaps = 67/593 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 318
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 319 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 371
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 372 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 431
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 432 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 491
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 492 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 551
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG
Sbjct: 552 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 611
Query: 455 -------------------------VEAAETITQVS--------DSVIPA----FKSAAE 477
V +A I + S DSV P FK +AE
Sbjct: 612 FYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 671
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
+L+ G A E LA ALA G T + RSL++S VT++L + S+A+ L
Sbjct: 672 KLIEEKG--AVEALAAALAHISGATSVDQRSLINSQAGFVTMILRCSIEMPNISYAWKEL 729
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQ-E 596
+ L E VKGM G FDV + + ++ L V + P L+
Sbjct: 730 KEQLGESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRRWQLTVATEQPELEGP 789
Query: 597 REQSRGRFG--GGGRGGF-GGRGGNR-FSG-GRGGGFSDRRNDRFSGGFRGSK 644
++ RGR G G RG F G RGG+R F G G+ GG + R R GG RG K
Sbjct: 790 QDGYRGRMGQRDGSRGAFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRGQK 842
>gi|332218192|ref|XP_003258243.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Nomascus leucogenys]
Length = 783
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 254/618 (41%), Positives = 341/618 (55%), Gaps = 71/618 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 173 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 225
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L + + GR P VLVL PTRELA QV +DF
Sbjct: 226 LIAQARTGTGKTFSFAIPLIEKLH----EELQDRKRGRPPQVLVLAPTRELANQVSKDFS 281
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 282 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 338
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 339 DEVDQMLDMGFADQVEEILSVAYKKDSEDDPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 398
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 399 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 458
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 459 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 518
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 519 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 578
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 579 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVGF 636
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 637 VTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEK 696
Query: 577 ADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRRN 633
++ L V + P L+ + G F G G RG G R GNR G+ G R
Sbjct: 697 WHDSRRWQLSVATEQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRG 756
Query: 634 DRFSGGFRGSKGRGGGNR 651
R GG + ++ + G +
Sbjct: 757 QRSGGGNKSNRSQNKGQK 774
>gi|224052119|ref|XP_002191015.1| PREDICTED: nucleolar RNA helicase 2-like [Taeniopygia guttata]
Length = 589
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 247/584 (42%), Positives = 329/584 (56%), Gaps = 73/584 (12%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F +S + L ++GI+ LFP+Q TF + DG D++ +ARTG GKT +F LP++E
Sbjct: 23 AFSNFPLSQNTVKLLTARGIKYLFPVQVKTFQPIYDGKDVIAQARTGTGKTFSFALPLIE 82
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
L + ++ GRAP VLVL+PTRELA QV +DF L+ C YGG+PY
Sbjct: 83 KLQS----VTQDGRRGRAPKVLVLVPTRELATQVAKDFK--NLTKKLSVACFYGGSPYKE 136
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG-- 287
Q LK GID+++GTPGRI+DHI+ ++LSS+K VLDE D ML MGF E VE ILG
Sbjct: 137 QLDLLKSGIDILVGTPGRIQDHIQNSKLELSSVKHVVLDEVDHMLDMGFAEQVEEILGSS 196
Query: 288 -KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346
K N QTLLFSAT P WV ++ K+++ + + IDL+G + + +T V H+ + C S
Sbjct: 197 YKRGSENNPQTLLFSATCPRWVYDVAKKYMRDEYEQIDLIGKKAQRTATTVEHLAIQCRS 256
Query: 347 SARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTL 402
S R+ V+ DII+ YS S GRTI+F ETK+ A++LA L A++LHGDI Q QRE+TL
Sbjct: 257 SQRAGVLGDIIQVYSGSRGRTIVFCETKKEANELAMNASLKQDAQSLHGDIPQKQREITL 316
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA--------- 453
GFR+G F L+ATNVAARGLDI +V L+IQC PP+DV++YIHRSGRTGRA
Sbjct: 317 KGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICL 376
Query: 454 -----------------------GVEAAETITQVSDS--------VIPA----FKSAAEE 478
GV +A + + S S V PA F+ +AEE
Sbjct: 377 FQRREEDLLKQVEHKAGITFKRVGVPSATDVIKASSSDAKKLLEAVPPAAVDYFRKSAEE 436
Query: 479 LLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLR 538
L++ G AA A ALA G I+ RSLL+S VT+VL+ ++ +A+ L+
Sbjct: 437 LIDEKGAVAAL--AAALAHISGAAHIQQRSLLNSTAGFVTMVLKCSIEMHNMRYAWRGLK 494
Query: 539 RFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQERE 598
L EE V M G FD+PV +L + + L V +LP L+E
Sbjct: 495 EQLGEEVDNKVSAMRFLKGKMGVCFDIPVDELSNIQEQWRDTRRWQLSVASELPELEEYP 554
Query: 599 QSRGRFGGGGRGGFGGRGGNRFSGGRGGGFSDRRNDRFSGGFRG 642
Q GGRG +RF R G F +RN F G RG
Sbjct: 555 QE------------GGRGFSRFGNSRQGDF--KRNSWFKSGNRG 584
>gi|198285649|gb|ACH85363.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Salmo salar]
Length = 611
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 234/578 (40%), Positives = 326/578 (56%), Gaps = 69/578 (11%)
Query: 89 AKVEPEAGVEEQERG-ESEHPN----AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMV 143
A P E+ + G E+E P A S FRIS + L+++GI LF IQ TF+ V
Sbjct: 8 AATTPAQSSEDSDSGKETETPEQKEGAFSNFRISPNTIKLLQARGISYLFDIQTQTFNSV 67
Query: 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203
+G D++G+ARTG GKTLAF +P++E L N P + GRAP +L L PTRELA QV
Sbjct: 68 YEGKDVIGQARTGTGKTLAFAIPLIEKLQNDPDDKRR----GRAPKILCLAPTRELAIQV 123
Query: 204 HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263
+DF + +T C YGG+ Y+ Q ++ GID+++GTPGRIKDH++ +DLS LK
Sbjct: 124 SKDFKDMTKKLSVT--CFYGGSSYNPQLDAIRSGIDILVGTPGRIKDHLQNNKLDLSQLK 181
Query: 264 FRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDK 320
VLDE D+ML MGF E VE IL + + QTLLFSAT PSWV ++ ++++
Sbjct: 182 HVVLDEVDQMLDMGFAEQVEEILSASYQKDSETNPQTLLFSATCPSWVYDVAKRYMRPTY 241
Query: 321 KTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQL 379
+ +DL+G + KA+T V H+ + C S R+ VI D+++ YS S GRTI+F ETK+ A++L
Sbjct: 242 EHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVVQVYSGSHGRTIVFCETKKDANEL 301
Query: 380 ---ADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP 436
A + +++LHGDI Q QRE+TL GFRSG F LVATNVAARGLDI +V L++QC P
Sbjct: 302 SMNASIKQSSQSLHGDIPQKQREITLKGFRSGTFEVLVATNVAARGLDIPEVDLVVQCSP 361
Query: 437 PRDVEAYIHRSGRTGRA--------------------------------GVEAAETITQV 464
P+DVE+YIHRSGRTGRA GV A I +
Sbjct: 362 PKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVEQKAGITFKRVGVPTANDIIKS 421
Query: 465 S--------DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSS 512
S DSV P F+ +A +L+ G A E L+ ALA G T ++ RSLL+S
Sbjct: 422 SSKDAVRFLDSVPPQAIEYFRVSATKLIEERG--AVEALSAALAHISGATALEQRSLLNS 479
Query: 513 LEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDL 572
+ T+ + + + A+ L+ L EE +++GM G FDVP +
Sbjct: 480 DTGYTTMTMNCSQELQNIGCAWRGLKEQLGEEIDNMIRGMTFLKGKMGVCFDVPADKVKQ 539
Query: 573 FRSGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRG 610
++ + L + +LP L+E+ + GG RG
Sbjct: 540 YQDAWQDGRRWQLSIATELPELEEKPRM-----GGDRG 572
>gi|291404256|ref|XP_002718616.1| PREDICTED: nucleolar protein GU2-like [Oryctolagus cuniculus]
Length = 780
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 255/598 (42%), Positives = 335/598 (56%), Gaps = 76/598 (12%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFP+QA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 185 AFSNFPISEETIKLLKARGVTFLFPVQAKTFHHVYSGRDLIAQARTGTGKTFSFAIPLIE 244
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + K+ GR P VLVL PTRELA QV +DF D+ L C YGG PY
Sbjct: 245 KL-QGELQDRKR---GRPPQVLVLAPTRELANQVSKDFSDI---TKKLAVACFYGGTPYG 297
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH+E G +DLS LK VLDE D+ML MGF + VE IL
Sbjct: 298 NQIERMRNGIDILVGTPGRIKDHLENGKLDLSKLKHVVLDEVDQMLDMGFADQVEDILKV 357
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++K+ + +DL+G + K + V H+ + C
Sbjct: 358 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKATYEQVDLIGKKTQKTAITVEHLAIKCH 417
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESA---SQLADLLPGARALHGDIQQSQREVT 401
S R+ VI D+IR YS GRTI+F ETK+ A SQ + + A++LHGDI Q QRE+T
Sbjct: 418 WSQRAAVIGDVIRVYSGHQGRTIVFCETKKEAQELSQNSSIKQDAQSLHGDIPQKQREIT 477
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG
Sbjct: 478 LKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 537
Query: 455 -------------------------VEAAETITQVS--------DSVIPA----FKSAAE 477
V +A I + S DSV P FK +AE
Sbjct: 538 FYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 597
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
+L+ G A E LA ALA G T + RSL++S VT++L + S+A+ L
Sbjct: 598 KLIEEKG--AVEALAAALAHISGATSVDQRSLINSDAGFVTMILRCSIEMPNISYAWKEL 655
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQER 597
+ L E+ +KGM G FDVP A + + ++ L V + P L+
Sbjct: 656 KEQLGEDVDSKIKGMVFLKGKLGVCFDVPTAAVTEIQEKWHDSRRWQLSVATEQPELEGP 715
Query: 598 EQSRGRFGG---GGRGGFGGRGGNR-FSGGRGGGFSDRRNDRFSGGFRGSKGRGGGNR 651
+ G F G G RG G RGG+R F G R G S GFRG + GGGNR
Sbjct: 716 REGYGAFRGQRDGSRGFRGQRGGSRGFRGQRDG----------SRGFRGQRA-GGGNR 762
>gi|37748194|gb|AAH59237.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
Length = 851
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 254/593 (42%), Positives = 336/593 (56%), Gaps = 67/593 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 318
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 319 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 371
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 372 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 431
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 432 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 491
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 492 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 551
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG
Sbjct: 552 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 611
Query: 455 -------------------------VEAAETITQVS--------DSVIPA----FKSAAE 477
V +A I + S DSV P FK +AE
Sbjct: 612 FYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 671
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
+L+ G A E LA ALA G T + RSL++S VT++L + S+A+ L
Sbjct: 672 KLIEEKG--AVEALAAALAHISGATSVDQRSLINSQAGFVTMILRCSIEMPNISYAWKEL 729
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQ-E 596
+ L E VKGM G FDV + + ++ + L V + P L+
Sbjct: 730 KEQLGESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRHWQLTVATEQPELEGP 789
Query: 597 REQSRGRFG--GGGRGGF-GGRGGNR-FSG-GRGGGFSDRRNDRFSGGFRGSK 644
+ RGR G G RG F G RGG+R F G G+ GG + R R GG RG K
Sbjct: 790 PDGYRGRMGQRDGSRGAFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRGQK 842
>gi|332218194|ref|XP_003258244.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Nomascus leucogenys]
Length = 715
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 254/618 (41%), Positives = 341/618 (55%), Gaps = 71/618 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V G D
Sbjct: 105 SEIEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKD 157
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L + + GR P VLVL PTRELA QV +DF
Sbjct: 158 LIAQARTGTGKTFSFAIPLIEKLH----EELQDRKRGRPPQVLVLAPTRELANQVSKDFS 213
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VL
Sbjct: 214 DI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVL 270
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 271 DEVDQMLDMGFADQVEEILSVAYKKDSEDDPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 330
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 331 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNS 390
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 391 AIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 450
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 451 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKD 510
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 511 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVGF 568
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L EE VKGM G FDVP A + +
Sbjct: 569 VTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEK 628
Query: 577 ADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRRN 633
++ L V + P L+ + G F G G RG G R GNR G+ G R
Sbjct: 629 WHDSRRWQLSVATEQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRG 688
Query: 634 DRFSGGFRGSKGRGGGNR 651
R GG + ++ + G +
Sbjct: 689 QRSGGGNKSNRSQNKGQK 706
>gi|26368308|dbj|BAB26817.2| unnamed protein product [Mus musculus]
Length = 832
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 254/593 (42%), Positives = 335/593 (56%), Gaps = 67/593 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 240 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 299
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 300 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 352
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 353 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 412
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 413 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 472
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 473 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 532
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG
Sbjct: 533 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 592
Query: 455 -------------------------VEAAETITQVS--------DSVIPA----FKSAAE 477
V +A I + S DSV P FK +AE
Sbjct: 593 FYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 652
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
+L+ G A E LA ALA G T + RSL++S VT++L + S+A+ L
Sbjct: 653 KLIEEKG--AVEALAAALAHISGATSVDQRSLINSQAGFVTMILRCSIEMPNISYAWKEL 710
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQ-E 596
+ L E VKGM G FDV + + ++ L V + P L+
Sbjct: 711 KEQLGESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRRWQLTVATEQPELEGP 770
Query: 597 REQSRGRFG--GGGRGGF-GGRGGNR-FSG-GRGGGFSDRRNDRFSGGFRGSK 644
+ RGR G G RG F G RGG+R F G G+ GG + R R GG RG K
Sbjct: 771 PDGYRGRMGQRDGSRGAFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRGQK 823
>gi|451172075|ref|NP_001263383.1| nucleolar RNA helicase 2 [Ovis aries]
Length = 783
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 260/626 (41%), Positives = 346/626 (55%), Gaps = 81/626 (12%)
Query: 81 KEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTF 140
KE ++ +++E E VE++E A S F IS + LK++G+ LFPIQA TF
Sbjct: 165 KEAASEENSELEQEMTVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTF 217
Query: 141 DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200
V G DL+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA
Sbjct: 218 HHVYSGKDLIAQARTGTGKTFSFAIPLVEKLL-GELQDRKR---GRAPQVLVLAPTRELA 273
Query: 201 KQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDL 259
QV DF D+ L C YGG PY Q ++K GID+++GTPGRIKDH++ G +DL
Sbjct: 274 SQVSRDFSDI---TKKLAVACFYGGTPYGGQIERMKNGIDILVGTPGRIKDHLQNGKLDL 330
Query: 260 SSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFL 316
+ LK VLDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++
Sbjct: 331 TKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPYWVFNVAKKYM 390
Query: 317 KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKES 375
KS + +DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+
Sbjct: 391 KSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFQGRTIIFCETKKE 450
Query: 376 ASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII 432
A +L+ + A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++
Sbjct: 451 AQELSQNVAIRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVV 510
Query: 433 QCEPPRDVEAYIHRSGRTGRA--------------------------------GVEAAET 460
Q PP+DVE+YIHRSGRTGRA GV +
Sbjct: 511 QSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSPTE 570
Query: 461 ITQVS--------DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRS 508
I + S DSV P FK +AE+L+ G A E LA ALA G T + RS
Sbjct: 571 IIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRS 628
Query: 509 LLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA 568
L++S VT++L + S+A+ L+ L E+ VKGM G FD+P A
Sbjct: 629 LINSEAGFVTMILRCSIEMPNISYAWKELKEQLGEDIDSKVKGMVFLKGKQGVCFDIPTA 688
Query: 569 DLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRG 625
+ + ++ L V + P L+ + F G G RG G R GNR GGRG
Sbjct: 689 SVTEVQGKWHDSRRWQLSVATEQPELEGPREGYRNFRGQREGNRGFRGQREGNR--GGRG 746
Query: 626 GGFSDRRNDRFSGGFRGSKGRGGGNR 651
R R FRG + GGGN+
Sbjct: 747 ----QRERSR---SFRGQRS-GGGNK 764
>gi|72384374|ref|NP_062426.2| nucleolar RNA helicase 2 [Mus musculus]
gi|341940509|sp|Q9JIK5.3|DDX21_MOUSE RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|74213643|dbj|BAE35625.1| unnamed protein product [Mus musculus]
gi|112180476|gb|AAH43655.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
gi|148700139|gb|EDL32086.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Mus
musculus]
Length = 851
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 254/593 (42%), Positives = 335/593 (56%), Gaps = 67/593 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 318
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 319 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 371
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 372 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 431
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 432 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 491
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 492 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 551
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG
Sbjct: 552 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 611
Query: 455 -------------------------VEAAETITQVS--------DSVIPA----FKSAAE 477
V +A I + S DSV P FK +AE
Sbjct: 612 FYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 671
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
+L+ G A E LA ALA G T + RSL++S VT++L + S+A+ L
Sbjct: 672 KLIEEKG--AVEALAAALAHISGATSVDQRSLINSQAGFVTMILRCSIEMPNISYAWKEL 729
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQ-E 596
+ L E VKGM G FDV + + ++ L V + P L+
Sbjct: 730 KEQLGESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRRWQLTVATEQPELEGP 789
Query: 597 REQSRGRFG--GGGRGGF-GGRGGNR-FSG-GRGGGFSDRRNDRFSGGFRGSK 644
+ RGR G G RG F G RGG+R F G G+ GG + R R GG RG K
Sbjct: 790 PDGYRGRMGQRDGSRGAFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRGQK 842
>gi|7385089|gb|AAF61690.1|AF220365_1 nucleolar RNA helicase II/Gu [Mus musculus]
gi|148700138|gb|EDL32085.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_a [Mus
musculus]
Length = 805
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 254/593 (42%), Positives = 335/593 (56%), Gaps = 67/593 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 213 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 272
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 273 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 325
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 326 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 385
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 386 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 445
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 446 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 505
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG
Sbjct: 506 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 565
Query: 455 -------------------------VEAAETITQVS--------DSVIPA----FKSAAE 477
V +A I + S DSV P FK +AE
Sbjct: 566 FYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 625
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
+L+ G A E LA ALA G T + RSL++S VT++L + S+A+ L
Sbjct: 626 KLIEEKG--AVEALAAALAHISGATSVDQRSLINSQAGFVTMILRCSIEMPNISYAWKEL 683
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQ-E 596
+ L E VKGM G FDV + + ++ L V + P L+
Sbjct: 684 KEQLGESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRRWQLTVATEQPELEGP 743
Query: 597 REQSRGRFG--GGGRGGF-GGRGGNR-FSG-GRGGGFSDRRNDRFSGGFRGSK 644
+ RGR G G RG F G RGG+R F G G+ GG + R R GG RG K
Sbjct: 744 PDGYRGRMGQRDGSRGAFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRGQK 796
>gi|431904163|gb|ELK09585.1| Nucleolar RNA helicase 2 [Pteropus alecto]
Length = 784
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 258/614 (42%), Positives = 344/614 (56%), Gaps = 85/614 (13%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 174 SELEQEIPVEQKE-------GAFSNFPISEGTIKLLKARGVTFLFPIQAKTFHHVYSGKD 226
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 227 LIAQARTGTGKTFSFAIPLIEKLL-GELQDRKR---GRAPQVLVLAPTRELANQVSKDFS 282
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VL
Sbjct: 283 DI---TKKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVL 339
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 340 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 399
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD-- 381
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 400 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNV 459
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 460 SIKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 519
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 520 ESYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 579
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 580 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSDAGF 637
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L E+ VKGM G FDVP A + +
Sbjct: 638 VTMILQCSIEMPNISYAWKELKEQLGEDIDSKVKGMVFLKGKQGVCFDVPTAAVTEIQEK 697
Query: 577 ADNAANVSLEVLKQLPPLQ-----------EREQSRGRFGG--GGRGGFGGRGGNR-FSG 622
++ L V + P L+ +RE +RG G G RG G R GNR F G
Sbjct: 698 WHDSRRWQLSVATEQPDLEGPREGYRSYRGQREGNRGFRGQREGNRGFRGQREGNRNFRG 757
Query: 623 GRGGGFSDRRNDRF 636
R GG R++RF
Sbjct: 758 QRSGG---GRSNRF 768
>gi|291236621|ref|XP_002738237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like
[Saccoglossus kowalevskii]
Length = 700
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 231/555 (41%), Positives = 315/555 (56%), Gaps = 62/555 (11%)
Query: 94 EAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
E E +E + E A S FR+S LK++ I LFPIQA TFD V DG D++ +A
Sbjct: 103 EVTEEPKELTKEEKAGAFSNFRLSPQTIASLKARSITHLFPIQAKTFDYVYDGHDVIAQA 162
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
RTG GKTLAF LP++E L N KA GR P VLV+ PTRELAKQV EDF
Sbjct: 163 RTGTGKTLAFALPLVEKLKNTEFKA------GRPPQVLVMAPTRELAKQVSEDFQ--ASN 214
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
L++ C+YGG Y QE +++G+DV++GTPGRI D++++ ++LS LK +LDE D M
Sbjct: 215 PRLSTLCVYGGTAYWPQESAIRRGVDVLVGTPGRILDYVQKNTLNLSQLKHVILDEVDRM 274
Query: 274 LRMGFVEDVELILG---KVED-ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE 329
L MGF + VE IL K+++ QTLLFSATLP WV + K++KS+ K +DL+G +
Sbjct: 275 LDMGFADTVEEILSASYKMDNPGENPQTLLFSATLPEWVYRTAKKYMKSEIKRVDLIGQQ 334
Query: 330 KMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQL---ADLLPG 385
K+K +T V H+ + C R+ I D+++ YS GR +IFTETK+ A+++ + +
Sbjct: 335 KLKTATTVEHLAIRCHYRQRAATISDVVQVYSGKHGRCMIFTETKKDANEMGLSSSIRQD 394
Query: 386 ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445
+ LHGDI Q+QRE+TL GFR GKF LVAT+VAARGLDI +V LI+ CEPP+D E YIH
Sbjct: 395 VQVLHGDIAQNQREITLKGFRDGKFRCLVATDVAARGLDIPEVDLIVMCEPPKDAENYIH 454
Query: 446 RSGRTGRAGV--------------------------------------------EAAETI 461
RSGRTGRAG +A +++
Sbjct: 455 RSGRTGRAGRTGVSVCFYKPNEEHVLKLIERRAGIKFRRVGAPQPEDIIKTSADDALKSL 514
Query: 462 TQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVL 521
V +S I F AAE+L+ G E LA ALA G T++ SRSLL+S E + T +
Sbjct: 515 DAVPESAIKLFHEAAEKLIEEKG--PVEALAAALALVSGATDVTSRSLLNSDEGYTTYIF 572
Query: 522 EAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAA 581
+ S+ + L +PE+ E +GM + + AVFDVP + S N
Sbjct: 573 SCQTEMRALSYVWRALGNQIPEDVKEKFRGMRMCTNTKSAVFDVPNDVIPKLESHWVNRW 632
Query: 582 NVSLEVLKQLPPLQE 596
+LE + LP + E
Sbjct: 633 GCTLEQAQHLPDIIE 647
>gi|134085663|ref|NP_001076996.1| nucleolar RNA helicase 2 [Bos taurus]
gi|133778115|gb|AAI23649.1| DDX21 protein [Bos taurus]
gi|296472163|tpg|DAA14278.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Bos taurus]
Length = 784
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 259/626 (41%), Positives = 345/626 (55%), Gaps = 81/626 (12%)
Query: 81 KEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTF 140
KE ++ +++E E VE++E A S F IS + LK++G+ LFPIQA TF
Sbjct: 166 KEAASEENSELEQEMTVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTF 218
Query: 141 DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200
V G DL+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA
Sbjct: 219 HHVYSGKDLIAQARTGTGKTFSFAIPLVEKLL-GELQDRKR---GRAPQVLVLAPTRELA 274
Query: 201 KQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDL 259
QV DF D+ L C YGG PY Q ++K GID+++GTPGRIKDH++ G +DL
Sbjct: 275 SQVSRDFSDI---TKKLAVACFYGGTPYGGQIERMKNGIDILVGTPGRIKDHLQNGKLDL 331
Query: 260 SSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFL 316
+ LK VLDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++
Sbjct: 332 TKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPYWVFNVAKKYM 391
Query: 317 KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKES 375
KS + +DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+
Sbjct: 392 KSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFQGRTIIFCETKKE 451
Query: 376 ASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII 432
A +L+ + A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++
Sbjct: 452 AQELSQNVAVRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVV 511
Query: 433 QCEPPRDVEAYIHRSGRTGRA--------------------------------GVEAAET 460
Q PP+DVE+YIHRSGRTGRA GV +
Sbjct: 512 QSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSPTE 571
Query: 461 ITQVS--------DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRS 508
I + S DSV P FK +AE+L+ G A E LA ALA G T + RS
Sbjct: 572 IIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRS 629
Query: 509 LLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA 568
L++S VT++L + S+A+ L+ L E+ VKGM G FD+P A
Sbjct: 630 LINSEAGFVTMILRCSIEMPNISYAWKELKEQLGEDIDSKVKGMVFLKGKQGVCFDIPTA 689
Query: 569 DLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRG 625
+ + ++ L V + P L+ + F G G RG G R GNR G RG
Sbjct: 690 SVTEVQEKWHDSRRWQLSVATEQPELEGPREGYRNFRGQREGNRGFRGQREGNR--GARG 747
Query: 626 GGFSDRRNDRFSGGFRGSKGRGGGNR 651
R R FRG + GGGN+
Sbjct: 748 ----QRERSR---SFRGQRS-GGGNK 765
>gi|417515609|gb|JAA53623.1| DEAD (Asp-Glu-Ala-Asp) box helicase 21 [Sus scrofa]
Length = 784
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 254/620 (40%), Positives = 339/620 (54%), Gaps = 64/620 (10%)
Query: 87 KKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG 146
K+A E EQE + A S F IS + LK++G+ LFPIQA TF V G
Sbjct: 165 KEAATEESNSELEQEISVEQKEGAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSG 224
Query: 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206
DL+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV D
Sbjct: 225 KDLIAQARTGTGKTFSFAIPLIEKL-QGELQDRKR---GRAPQVLVLAPTRELASQVSRD 280
Query: 207 F-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265
F D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ +DL+ LK
Sbjct: 281 FSDI---TKKLAVACFYGGTPYGGQIDRMRNGIDILVGTPGRIKDHLQNNKLDLTKLKHV 337
Query: 266 VLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKT 322
VLDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS +
Sbjct: 338 VLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQ 397
Query: 323 IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESA---SQ 378
+DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A SQ
Sbjct: 398 VDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGYQGRTIIFCETKKEAQELSQ 457
Query: 379 LADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR 438
A + A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+
Sbjct: 458 NAAVRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPK 517
Query: 439 DVEAYIHRSGRTGRA--------------------------------GVEAAETITQVS- 465
DVE+YIHRSGRTGRA GV + I + S
Sbjct: 518 DVESYIHRSGRTGRAGRTGICICFYQHKEEYQLTLVEQKAGIKFKRIGVPSPTEIIKASS 577
Query: 466 -------DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLE 514
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 578 KDAIRLLDSVPPTAIGHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSDA 635
Query: 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFR 574
VT++L + S+A+ L+ L E+ VKGM G FD+P A + +
Sbjct: 636 GFVTMILRCSIEMPNISYAWKELKEQLGEDIDSKVKGMVFLKGKQGVCFDIPTAAVTEVQ 695
Query: 575 SGADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDR 631
++ L V + P L+ + F G GGRG G + GNR G+ G +
Sbjct: 696 EKWHDSRRWQLSVATEQPELEGPREGYRSFRGQREGGRGFRGQQKGNRSFRGQREGNRNF 755
Query: 632 RNDRFSGGFRGSKGRGGGNR 651
R R GG R ++ + G +
Sbjct: 756 RGQRSGGGSRSNRFQNKGQK 775
>gi|345798963|ref|XP_851746.2| PREDICTED: nucleolar RNA helicase 2 [Canis lupus familiaris]
Length = 785
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 254/601 (42%), Positives = 332/601 (55%), Gaps = 77/601 (12%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++
Sbjct: 189 AFSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIPLIV 248
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + K+ GRAP VLVL PTRELA QV DF D+ L C YGG PY
Sbjct: 249 KL-QGELQDRKR---GRAPQVLVLAPTRELANQVSRDFSDI---TRKLAVACFYGGTPYG 301
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 302 GQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSV 361
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + K + V H+ + C
Sbjct: 362 AYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCH 421
Query: 346 SSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 422 WTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIRQDAQSLHGDIPQKQREIT 481
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR+G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 482 LKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICIC 541
Query: 455 -------------------------VEAAETITQVS--------DSVIPA----FKSAAE 477
V +A I + S DSV P FK +AE
Sbjct: 542 FYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 601
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
+L+ G A E LA ALA G T + RSL++S VT++L + S+A+ L
Sbjct: 602 KLIEEKG--AVEALAAALAHISGATSVDQRSLINSDAGFVTMILRCSIEMPNISYAWKEL 659
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQER 597
+ L E+ VKGM G FDVP A L + ++ L V + P L+
Sbjct: 660 KEQLGEDIDSKVKGMVFLKGKQGVCFDVPTAALTEIQEKWHDSRRWQLSVATEQPELEGP 719
Query: 598 EQSRGRFGG---GGRGGFGGRGGNR-FSGGRGGGFSDRRNDRFSGGFRGSKGRGG--GNR 651
+ F G G RG G R G+R F G R G S FRG + RGG NR
Sbjct: 720 REGYRNFRGQREGSRGSRGQREGSRGFRGQREGNRS----------FRGQRSRGGNKNNR 769
Query: 652 W 652
+
Sbjct: 770 F 770
>gi|410975245|ref|XP_003994044.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Felis catus]
gi|410975247|ref|XP_003994045.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Felis catus]
Length = 712
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 256/598 (42%), Positives = 333/598 (55%), Gaps = 76/598 (12%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 116 AFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 175
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + K+ GRAP VLVL PTRELA QV DF D+ L C YGG PY
Sbjct: 176 KL-QGELQDRKR---GRAPRVLVLAPTRELANQVSRDFSDI---TRKLAVACFYGGTPYG 228
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 229 GQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSV 288
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K+++S + +DL+G + K + V H+ + C
Sbjct: 289 AYKKDSEDNPQTLLFSATCPHWVYNVAKKYMRSTYEQVDLIGKKTQKTAITVEHLAIKCH 348
Query: 346 SSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 349 WTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLHGDIPQKQREIT 408
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG
Sbjct: 409 LKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICIC 468
Query: 455 -------------------------VEAAETITQVS--------DSVIPA----FKSAAE 477
V +A I + S DSV P FK +AE
Sbjct: 469 FYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAIGHFKQSAE 528
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
+L+ G A E LA ALA G T + RSL++S VT++L + S+A+ L
Sbjct: 529 KLIEEKG--AVEALAAALAHISGATSVDQRSLINSDAGFVTMILRCSIEMPNISYAWKEL 586
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQ-E 596
+ L EE VKGM G FDVP A + + ++ L V + P L+
Sbjct: 587 KEQLGEEIDSKVKGMVFLKGKQGVCFDVPTAAVTEIQEKWHDSRRWQLSVATEQPELEGP 646
Query: 597 REQSRGRFGG--GGRGGFGGRGGNR-FSGGRGGGFSDRRNDRFSGGFRGSKGRGGGNR 651
RE RG G G RG G R GNR F G R G S FRG + GGGN+
Sbjct: 647 REGYRGFRGQREGSRGFRGQREGNRSFRGQREGNRS----------FRGQRS-GGGNK 693
>gi|350592792|ref|XP_001928807.4| PREDICTED: LOW QUALITY PROTEIN: nucleolar RNA helicase 2 [Sus
scrofa]
Length = 844
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 254/620 (40%), Positives = 339/620 (54%), Gaps = 64/620 (10%)
Query: 87 KKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG 146
K+A E EQE + A S F IS + LK++G+ LFPIQA TF V G
Sbjct: 225 KEAATEESNSELEQEISVEQKEGAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSG 284
Query: 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206
DL+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV D
Sbjct: 285 KDLIAQARTGTGKTFSFAIPLIEKL-QGELQDRKR---GRAPQVLVLAPTRELASQVSRD 340
Query: 207 F-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265
F D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ +DL+ LK
Sbjct: 341 FSDI---TKKLAVACFYGGTPYGGQIDRMRNGIDILVGTPGRIKDHLQNNKLDLTKLKHV 397
Query: 266 VLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKT 322
VLDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS +
Sbjct: 398 VLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQ 457
Query: 323 IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESA---SQ 378
+DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A SQ
Sbjct: 458 VDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGYQGRTIIFCETKKEAQELSQ 517
Query: 379 LADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR 438
A + A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+
Sbjct: 518 NAAVRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPK 577
Query: 439 DVEAYIHRSGRTGRA--------------------------------GVEAAETITQVS- 465
DVE+YIHRSGRTGRA GV + I + S
Sbjct: 578 DVESYIHRSGRTGRAGRTGICICFYQHKEEYQLTLVEQKAGIKFKRIGVPSPTEIIKASS 637
Query: 466 -------DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLE 514
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 638 KDAIRLLDSVPPTAIGHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSDA 695
Query: 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFR 574
VT++L + S+A+ L+ L E+ VKGM G FD+P A + +
Sbjct: 696 GFVTMILRCSIEMPNISYAWKELKEQLGEDIDSKVKGMVFLKGKQGVCFDIPTAAVTEVQ 755
Query: 575 SGADNAANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDR 631
++ L V + P L+ + F G GGRG G + GNR G+ G +
Sbjct: 756 EKWHDSRRWQLSVATEQPELEGPREGYRSFRGQREGGRGFRGQQKGNRSFRGQREGNRNF 815
Query: 632 RNDRFSGGFRGSKGRGGGNR 651
R R GG R ++ + G +
Sbjct: 816 RGQRSGGGSRSNRFQNKGQK 835
>gi|390333037|ref|XP_786504.3| PREDICTED: nucleolar RNA helicase 2-like [Strongylocentrotus
purpuratus]
Length = 751
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 241/570 (42%), Positives = 317/570 (55%), Gaps = 74/570 (12%)
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
E A S F I EKL +KG++ LFPIQA TF + DG D++ +ARTG GKTL+FVL
Sbjct: 113 EKIGAFSNFGIRPKTIEKLHAKGVKYLFPIQAQTFKPIDDGFDVIAQARTGTGKTLSFVL 172
Query: 166 PILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225
P++E P K+ GR P +L L PTRELAKQ+ E F+ G L++ C+YGG
Sbjct: 173 PLVEKWQQFPQKS------GRQPIILALAPTRELAKQISEYFEAIGPH--LSTTCIYGGT 224
Query: 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285
Y QE +++G+DVV+GTPGRI D+I + +DLS LK VLDE D ML MGF E VE I
Sbjct: 225 SYWPQESAIRRGLDVVVGTPGRILDYIRKNTLDLSKLKHVVLDEVDRMLDMGFAESVEEI 284
Query: 286 LGKV----------EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
LG E N QTLLFSAT+P WV + K+++ D K +DLVG ++MK +T
Sbjct: 285 LGAAYKTGQPGDGEEAPNNPQTLLFSATVPPWVYQTAVKYMRKDLKKVDLVGRDRMKTAT 344
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLA---DLLPGARALHG 391
V+H+ + CS R QVI D+I+ Y GR ++F ETK A++LA D+ + +HG
Sbjct: 345 TVQHLAINCSYFDRPQVISDVIKVYGGLDGRCMVFCETKRDANELAMSSDVKQETQVMHG 404
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q+QREVTL GFR GKF LV T+VAARGLDI +V L+IQC PPRDV++YIHRSGRTG
Sbjct: 405 DIPQTQREVTLKGFREGKFQCLVTTDVAARGLDIPEVDLVIQCNPPRDVDSYIHRSGRTG 464
Query: 452 RAG------------------------------VEAAE-------TITQVSD-------S 467
RAG V A + ++ V+D
Sbjct: 465 RAGRNGVCVCFYKRQEERDLQKVEYKAGIKFKRVSAPQPSDIIKSSVKDVTDLLGAVQPE 524
Query: 468 VIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPI 527
++ FKSAAE ++ G AA A ALA G T +K+RSLL++ E T +LE +
Sbjct: 525 MVAMFKSAAEAIIAEKGAVAAL--AAALAHITGSTAMKTRSLLTAEEGKTTFLLETQSQL 582
Query: 528 YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEV 587
F L R++ + +KG+ L D AVFDV D S + + L +
Sbjct: 583 MDIGDVFKTLGRYIDRDSRNAIKGIRLCKDQTAAVFDVSDDHKDYLLSLWQDTSEAQLTI 642
Query: 588 LKQLPPLQEREQSRGRF-----GGGGRGGF 612
+LP L QS G F GG G+ F
Sbjct: 643 ATELPELLVPTQS-GSFDDRRGGGAGKTTF 671
>gi|21410145|gb|AAH30895.1| Ddx21 protein, partial [Mus musculus]
Length = 689
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 254/593 (42%), Positives = 335/593 (56%), Gaps = 67/593 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 97 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 156
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 157 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 209
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 210 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 269
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 270 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 329
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 330 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 389
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG
Sbjct: 390 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 449
Query: 455 -------------------------VEAAETITQVS--------DSVIPA----FKSAAE 477
V +A I + S DSV P FK +AE
Sbjct: 450 FYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 509
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
+L+ G A E LA ALA G T + RSL++S VT++L + S+A+ L
Sbjct: 510 KLIEEKG--AVEALAAALAHISGATSVDQRSLINSQAGFVTMILRCSIEMPNISYAWKEL 567
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQ-E 596
+ L E VKGM G FDV + + ++ L V + P L+
Sbjct: 568 KEQLGESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRRWQLTVATEQPELEGP 627
Query: 597 REQSRGRFG--GGGRGGF-GGRGGNR-FSG-GRGGGFSDRRNDRFSGGFRGSK 644
+ RGR G G RG F G RGG+R F G G+ GG + R R GG RG K
Sbjct: 628 PDGYRGRMGQRDGSRGAFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRGQK 680
>gi|81295381|ref|NP_001032278.1| nucleolar RNA helicase 2 [Rattus norvegicus]
gi|123780397|sp|Q3B8Q1.1|DDX21_RAT RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|77748254|gb|AAI05879.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Rattus norvegicus]
gi|149038676|gb|EDL92965.1| rCG22008, isoform CRA_b [Rattus norvegicus]
Length = 782
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 256/621 (41%), Positives = 345/621 (55%), Gaps = 80/621 (12%)
Query: 87 KKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG 146
++++ E E VE++E A S F IS + LK++G+ LFPIQA TF V G
Sbjct: 167 EESETEKEIPVEQKE-------GAFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSG 219
Query: 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206
DL+ +ARTG GKT +F +P++E L G + + GRAP VLVL PTRELA QV +D
Sbjct: 220 KDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKR----GRAPQVLVLAPTRELANQVSKD 275
Query: 207 F-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265
F D+ L+ C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK
Sbjct: 276 FSDI---TKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHV 332
Query: 266 VLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKT 322
VLDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS +
Sbjct: 333 VLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQ 392
Query: 323 IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD 381
+DL+G + KA+ V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 393 VDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQ 452
Query: 382 ---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR 438
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+
Sbjct: 453 NTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPK 512
Query: 439 DVEAYIHRSGRTGRAG--------------------------------VEAAETITQVS- 465
DVE+YIHRSGRTGRAG V +A I + S
Sbjct: 513 DVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASS 572
Query: 466 -------DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLE 514
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 573 KDAIRLLDSVPPTAIGHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSQA 630
Query: 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFR 574
VT++L + S+A+ L+ L E VKGM G FDV + +
Sbjct: 631 GFVTMILRCSVEMPNISYAWKELKEQLGESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIK 690
Query: 575 SGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRGGFGGRGGNR--FSGGRGGGFSDRR 632
++ L V + P L+ + G RGG G R G+R F G RGG + R
Sbjct: 691 EKWHDSRRWQLTVATEQPELEGPPE-------GYRGGRGQRDGSRGSFRGQRGGSRNFRG 743
Query: 633 NDRFSG--GFRGSKGRGGGNR 651
+ G FRG + GGGN+
Sbjct: 744 QGQRGGSRNFRGQR-PGGGNK 763
>gi|326923426|ref|XP_003207937.1| PREDICTED: nucleolar RNA helicase 2-like [Meleagris gallopavo]
Length = 602
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 249/579 (43%), Positives = 328/579 (56%), Gaps = 64/579 (11%)
Query: 100 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
+E E A S F +S LK++ ++ LFP+Q TF + DG DL+ +ARTG GK
Sbjct: 28 EELTEEAREGAFSNFPLSQNTINLLKARDVKYLFPVQVKTFQPIYDGKDLIAQARTGTGK 87
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
T +F +P+ E L + S+ GR+P VLVL+PTRELA QV DF L+
Sbjct: 88 TFSFAIPLTEKLQS----VSQDERRGRSPKVLVLVPTRELAIQVARDFK--NLTRKLSVA 141
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
C YGGAPY AQ LK GID+++GTPGRIKDHI+ +DLS++K VLDE D ML MGF
Sbjct: 142 CFYGGAPYKAQFDLLKSGIDILVGTPGRIKDHIQNSKLDLSNVKHVVLDEVDHMLDMGFA 201
Query: 280 EDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
E VE ILG K N QTLLFSAT P WV ++ K++K + + +DL+G + + +T
Sbjct: 202 EQVEEILGFAYKKGSENNPQTLLFSATCPRWVYDVAKKYMKDEYEQVDLIGKKTQRTATT 261
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGD 392
V H+ + C SS R +V+ DII+ YS S GRTI+F ETK+ A++LA L A++LHGD
Sbjct: 262 VEHLAIQCRSSQRVEVLGDIIQVYSGSHGRTIVFCETKKEANELALNSALKQEAQSLHGD 321
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
I Q QRE+TL GFR+G F L+ATNVAARGLDI +V L+IQC PP+DV++YIHRSGRTGR
Sbjct: 322 IPQKQREITLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGR 381
Query: 453 AG-------------------VE--------------AAETITQVSD-----------SV 468
AG VE A E I SD S
Sbjct: 382 AGRAGICICFYQRKEEDLLKQVEQKAGITFRRIGVPSATEIIKASSDDAKKCLDAVPPSA 441
Query: 469 IPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIY 528
I F+ +A EL+ G A + LA ALA G + I+ RSLL+S VT+VL+ +
Sbjct: 442 IDYFRQSARELIEEKG--AVDALAAALAHISGASSIQQRSLLNSTAGFVTMVLKCSIEMR 499
Query: 529 TPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVL 588
+ S+A+ L+ L EE + M G FD+PV +L + + L V
Sbjct: 500 SMSYAWRGLKEQLGEEIDGKISAMRFLKGKMGVCFDIPVDELSHIQEQWRDTRRWQLAVA 559
Query: 589 KQLPPLQEREQ--SRG--RFGGGGRGG-FGGRGGNRFSG 622
K+LP L+E+ Q +RG RFG + G FGG R G
Sbjct: 560 KELPELEEQPQDANRGPSRFGSFKKNGRFGGWKQGRPPG 598
>gi|194205947|ref|XP_001917975.1| PREDICTED: nucleolar RNA helicase 2 [Equus caballus]
Length = 785
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 251/594 (42%), Positives = 332/594 (55%), Gaps = 71/594 (11%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 175 SELEQEIPVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKD 227
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L + + GRAP VLVL PTRELA QV DF
Sbjct: 228 LIAQARTGTGKTFSFAIPLIEKLQ----RELQDRKRGRAPQVLVLAPTRELANQVSRDFS 283
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VL
Sbjct: 284 DI---TKKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVL 340
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 341 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVD 400
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR-TIIFTETKESASQLADLL 383
L+G + K + V H+ + C + R+ VI D+IR YS R TIIF ETK+ A +L+ +
Sbjct: 401 LIGKKTQKTAMTVEHLAIKCHWTQRAAVIGDVIRVYSGYQRRTIIFCETKKEAQELSQSV 460
Query: 384 P---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 461 SIKLDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 520
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 521 ESYIHRSGRTGRAGRTGICICFYQHKEEHQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 580
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 581 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSDAGF 638
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L ++ S+A+ L+ L E+ VKGM G FDVP A +
Sbjct: 639 VTMILRCSIEMHNISYAWKELKEQLGEDIDSKVKGMVFLKGKQGVCFDVPTAAAADVQEK 698
Query: 577 ADNAANVSLEVLKQLPPLQ-EREQSRGRFG--GGGRGGFGGRGGNRFSGGRGGG 627
++ L V + P L+ RE SRG G G RG G R GNR S G+ G
Sbjct: 699 WHDSRRWQLSVATEQPELEGPREGSRGFRGQRDGSRGFRGRREGNRGSRGQREG 752
>gi|118092587|ref|XP_001232052.1| PREDICTED: nucleolar RNA helicase 2 [Gallus gallus]
Length = 713
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 233/554 (42%), Positives = 316/554 (57%), Gaps = 61/554 (11%)
Query: 98 EEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQ 157
+EQE E + A S F IS + L+++G+ LFP+Q TF+ V G D++ +ARTG
Sbjct: 122 QEQEMTEEQKEGAFSNFPISKGTIQLLQARGVTYLFPVQVKTFNPVYSGKDVIAQARTGT 181
Query: 158 GKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGL 216
GKT +F +P++E L S++ GR+P VLVL PTRELA QV +DF D+ L
Sbjct: 182 GKTFSFAIPLIEKLQAD----SQERRRGRSPKVLVLAPTRELANQVAKDFKDI---TRKL 234
Query: 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276
T C YGG PY+ Q ++ GID+++GTPGRIKDH++ G +DL+ +K VLDE D+ML M
Sbjct: 235 TVACFYGGTPYNGQIDLIRSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDM 294
Query: 277 GFVEDVELIL---GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
GF E VE IL K + + QTLLFSAT P+WV ++ K++KS + +DL+G + KA
Sbjct: 295 GFAEQVEDILRVAYKKDSEDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRKTQKA 354
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARAL 389
+T V H+ + C S R+ VI D+I+ YS S GRTI+F ETK+ A++LA + ++L
Sbjct: 355 ATTVEHLAIECHWSQRAAVIGDVIQVYSGSYGRTIVFCETKKDANELALNASIKQDCQSL 414
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGR
Sbjct: 415 HGDIPQKQREITLKGFRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGR 474
Query: 450 TGRAG-------------------VEAAETIT-------------------------QVS 465
TGRAG VE IT V
Sbjct: 475 TGRAGRTGICICFYQRKEENQLRYVEVKAGITFKRVGVPTATDIIKASSKDAIRCLDSVP 534
Query: 466 DSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGK 525
+ I FK +A+ L+ G A LA ALA G T I+ RSLL+S VT+VL +
Sbjct: 535 QTAIEYFKESAQLLIEEKGPVNA--LAAALAHISGATSIEQRSLLNSDVGFVTMVLRCSE 592
Query: 526 PIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSL 585
I S+ + LR L + V M G FD+PVAD +++ SL
Sbjct: 593 EINNMSYVWRRLREQLGGDVDRKVNRMRFIKGRMGVCFDIPVADQKDIEERWEDSKQCSL 652
Query: 586 EVLKQLPPLQEREQ 599
V +LP L+E ++
Sbjct: 653 CVANELPELEESQR 666
>gi|187960121|ref|NP_001120807.1| nucleolar RNA helicase 2 [Danio rerio]
gi|169642686|gb|AAI60629.1| Ddx21 protein [Danio rerio]
Length = 759
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 245/576 (42%), Positives = 330/576 (57%), Gaps = 64/576 (11%)
Query: 99 EQERGESEH-PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQ 157
EQE+ E A S FRIS + L+++G+ LF IQ TF+ V DG DL+G+ARTG
Sbjct: 155 EQEKETPEQREGAFSNFRISPNTIKLLQARGVSYLFDIQVKTFNAVYDGKDLIGQARTGT 214
Query: 158 GKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217
GKT +F +P++E L +G + + GR P VLVL PTRELA QV +DF + +T
Sbjct: 215 GKTFSFAVPLVEKLQSGDQERRR----GRPPKVLVLAPTRELAIQVTKDFKDITRKLSVT 270
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
C YGG+ Y+ Q ++ GIDV++GTPGRI+DH++ +DLS L+ VLDE D+ML MG
Sbjct: 271 --CFYGGSSYNPQIDAIRSGIDVLVGTPGRIRDHLQNNKLDLSQLQHVVLDEVDQMLDMG 328
Query: 278 FVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS 334
F E VE IL K + K QTLLFSAT PSWV ++ K+++S +DL+G + KA+
Sbjct: 329 FAEQVEEILSASYKKDAEQKPQTLLFSATCPSWVYDVAKKYMRSQFIHVDLIGKKTQKAA 388
Query: 335 TNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALH 390
T V H+ + C S R+ VI D+I+ YS S GRTI+F ETK+ A++L+ + A++LH
Sbjct: 389 TTVEHLAIACHWSQRASVIGDVIQVYSGSHGRTIVFCETKKEATELSLNTSIKQSAQSLH 448
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GDI Q QREVTL GFR+G F LVATNVAARGLDI +V L+IQ PP DVE+YIHRSGRT
Sbjct: 449 GDIPQKQREVTLKGFRNGSFEVLVATNVAARGLDIPEVDLVIQSSPPNDVESYIHRSGRT 508
Query: 451 GRAG--------------------------------VEAAETITQVS--DSV-----IPA 471
GRAG V A I Q S D+V +PA
Sbjct: 509 GRAGRTGICICFYQRKEESQLKFVEQKAGITFKRVGVPTAYDIIQSSSKDAVRFLDSVPA 568
Query: 472 -----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKP 526
F+ AA+EL+ G A E LA ALA G T ++ RSL++S +++L +
Sbjct: 569 VAVGYFREAAQELIQQRG--AVEALAAALAHISGATSLEQRSLINSEPGFSSMILSCSQE 626
Query: 527 IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLE 586
+++ SFA+ L+ L EE + + M G FDVPV+ L + ++ +L
Sbjct: 627 MHSISFAWRGLKEQLGEEIDQHISHMVFIKGKKGVCFDVPVSKLKEVQEKWQDSRRWTLS 686
Query: 587 VLKQLPPLQE----REQSRGRFGGGGRGGFGGRGGN 618
QLP L++ G G R GFG R GN
Sbjct: 687 TATQLPELEQSLRPNSGFGNSGGFGNRSGFGNRSGN 722
>gi|417404458|gb|JAA48981.1| Putative nucleolar rna helicase 2 [Desmodus rotundus]
Length = 765
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 256/602 (42%), Positives = 338/602 (56%), Gaps = 80/602 (13%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 175 SELEQEIPVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKD 227
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 228 LIAQARTGTGKTFSFAIPLIEKLL-GELQERKR---GRAPQVLVLAPTRELANQVSKDFI 283
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VL
Sbjct: 284 DI---TKKLAVACFYGGTPYGGQLERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVL 340
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +D
Sbjct: 341 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD 400
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESA---SQLA 380
L+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A SQ A
Sbjct: 401 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNA 460
Query: 381 DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DV
Sbjct: 461 SIRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDV 520
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 521 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 580
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 581 AIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSESGF 638
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L EE VKGM G FDV A + +
Sbjct: 639 VTMILKCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKQGVCFDVRTAAVTEIQEK 698
Query: 577 ADNAANVSLEVLKQLPPLQ-EREQSRGRFGGGGRGGFGGRGGNR-FSGGRGGGFSDRRND 634
++ L V + P L+ RE G R G R G+R F G R GG S RN+
Sbjct: 699 WHDSRRWQLSVATEQPELEGPRE--------GYRNFRGQREGSRNFRGQRSGGGS--RNN 748
Query: 635 RF 636
RF
Sbjct: 749 RF 750
>gi|327277992|ref|XP_003223747.1| PREDICTED: nucleolar RNA helicase 2-like [Anolis carolinensis]
Length = 628
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 255/600 (42%), Positives = 341/600 (56%), Gaps = 70/600 (11%)
Query: 101 ERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
E E + A S F +S + LK++G+ LFP+Q TF + +G D++ +ARTG GKT
Sbjct: 40 ELTEEKKEGAFSNFDLSKATVDLLKARGVTYLFPVQVKTFKHISEGKDVIAQARTGTGKT 99
Query: 161 LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSC 219
+F +P++E L + S++ GR P VLVL PTRELA QV DF DV LT
Sbjct: 100 FSFAIPLIEKLQ----RDSQERKRGRTPKVLVLAPTRELAMQVARDFKDV---TRKLTVA 152
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
C YGG Y+ Q ++ GID+++GTPGRIKDH+E G +++SSLK VLDE D+ML MGF
Sbjct: 153 CFYGGTAYNGQLDLIRNGIDILVGTPGRIKDHLENGKLEISSLKHVVLDEVDQMLDMGFA 212
Query: 280 EDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
+ VE IL K + + QTLLFSAT P WV ++ K++KS + IDL+G + K +
Sbjct: 213 DQVEDILKYAYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKSKYEQIDLIGKKTKKTAMT 272
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGD 392
V H+ + C S R+ VI D+++ YS S GRTIIF ETK+ A++LA + A++LHGD
Sbjct: 273 VEHLAIECHWSQRAAVIGDVLQVYSGSHGRTIIFCETKKEATELALNASIKQDAQSLHGD 332
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
I Q QREVTL GFR+G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGR
Sbjct: 333 IPQKQREVTLKGFRNGAFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGR 392
Query: 453 A--------------------------------GVEAAETITQVS--------DSVIPA- 471
A GV A I + S DSV P+
Sbjct: 393 AGRTGMCICFYQRKEDYQLKQVEQKAGITFKRVGVPTATDIIKASSKDAIKSLDSVPPSA 452
Query: 472 ---FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIY 528
F+ +AE L+ G A E LA ALA G T I+ RSLL+S +VT++L+ +
Sbjct: 453 IDYFRQSAERLIEEKG--AVEALAAALAHISGATSIEQRSLLNSDAGYVTMMLQCSVEMQ 510
Query: 529 TPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVL 588
+ +A+ L+ L E+ V M G FD+PVA+L + ++ L V
Sbjct: 511 SIGYAWRGLKEQLGEDIDSKVFRMRFLKGKTGVCFDIPVAELPKLQQTWQDSRRWQLSVA 570
Query: 589 KQLPPLQEREQSRGRFGGGGRGGFGG----RGGNRFSGGRGGGFSDRRNDRFSGGFRGSK 644
+LP L+E + GR GGG+ F GG+ F GR GG S+RR DRF RG K
Sbjct: 571 TELPELEESLKEPGR--GGGKPDFRNRRGGGGGSHFRNGRRGGDSNRR-DRFRN--RGQK 625
>gi|432106715|gb|ELK32367.1| Nucleolar RNA helicase 2 [Myotis davidii]
Length = 799
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 253/614 (41%), Positives = 338/614 (55%), Gaps = 84/614 (13%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 190 SELEQEIPVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKD 242
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L + GRAP VLVL PTRELA QV DF
Sbjct: 243 LIAQARTGTGKTFSFAIPLIEKLLAELHDRKR----GRAPQVLVLTPTRELANQVSRDFS 298
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDH++ G ++L+ LK VL
Sbjct: 299 DI---TKKLSVACFYGGTPYGGQIERIRNGIDILVGTPGRIKDHLQNGKLELTKLKHVVL 355
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++K + +D
Sbjct: 356 DEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKPTYEQVD 415
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD-- 381
L+G KA+ V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+
Sbjct: 416 LIGKRTQKAAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNT 475
Query: 382 -LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F +VATNVAARGLDI +V L+IQC PP+DV
Sbjct: 476 SMKQDAQSLHGDIPQKQREITLKGFRNGDFGVMVATNVAARGLDIPEVDLVIQCSPPKDV 535
Query: 441 EAYIHRSGRTGRAG--------------------------------VEAAETITQVS--- 465
E+YIHRSGRTGRAG V +A I + S
Sbjct: 536 ESYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 595
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 596 AIRFLDSVPPTAINHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSEAGF 653
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L+ + S+A+ L+ L E+ VKGM G FDV + +
Sbjct: 654 VTMILKCSIEMPNISYAWKELKEQLGEDIDSKVKGMVFLKGKEGVCFDVRTEAVTGIQEK 713
Query: 577 ADNAANVSLEVLKQLPPLQ-----------EREQSRGRFG--GGGRGGFGGRGGNR-FSG 622
++ L V + P L+ +RE +RG G G R G R GNR F G
Sbjct: 714 WHDSRRWQLSVATEQPELEGPREGFRSFRGQREGNRGFRGQRDGSRNFRGQRDGNRNFRG 773
Query: 623 GRGGGFSDRRNDRF 636
R GG RN+RF
Sbjct: 774 QRSGG--GNRNNRF 785
>gi|167515852|ref|XP_001742267.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778891|gb|EDQ92505.1| predicted protein [Monosiga brevicollis MX1]
Length = 591
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 223/537 (41%), Positives = 322/537 (59%), Gaps = 64/537 (11%)
Query: 116 ISVPLRE----KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
+S PLR + +KG LF IQ+ TF +L+G D++G+ARTG+GKTL+F LPI+E L
Sbjct: 2 LSNPLRRSRTPHMLTKGYTKLFEIQSRTFTPILEGKDILGKARTGEGKTLSFALPIIELL 61
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ G GRAP L + PTRELA QV ++F G + L S C+YGGAPY QE
Sbjct: 62 LK-----EGRNGRGRAPRALCMAPTRELAHQVGKEFADIGPS--LASTCVYGGAPYMPQE 114
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI--LGKV 289
+++G+DV+IGTPGR+KDH+++G + L+ +K+ +LDEAD ML GFVE ++ I +
Sbjct: 115 SAIRRGLDVIIGTPGRLKDHLDKGTLKLTDIKYLILDEADRMLEQGFVEAIDEIQKMTIA 174
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ K Q +LFSAT+P ++ ++ + T+D VG+ + + S V H+ + C + R
Sbjct: 175 QSGGKPQMILFSATMPDFILSTVKNYM-PNHVTVDTVGSSRNRTSKGVDHLAIKCPWTER 233
Query: 350 SQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGF 405
VI D+++ YS + GRTIIFT+TK+ A++LA DL + LHGDI Q QRE++L F
Sbjct: 234 RAVIADVVQMYSGAHGRTIIFTQTKKDANELALETDLRQEVQVLHGDIPQKQREMSLQAF 293
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG----------- 454
R GK LVAT+VAARGLDI +V L++QCEPP+DVE+YIHRSGRTGRAG
Sbjct: 294 RDGKVRCLVATDVAARGLDIPEVDLVVQCEPPKDVESYIHRSGRTGRAGRTGTCICFYKP 353
Query: 455 ---------------------------------VEAAETITQVSDSVIPAFKSAAEELLN 481
+A ++ ++DSV+ FK AA EL+
Sbjct: 354 NQEDAMRYVERRAGISFRRIGAPQPEDVIKASARDAFRSLEAINDSVLAHFKDAARELIE 413
Query: 482 NSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFL 541
G AA A ALA G TEIK+RSLLSS+ D+ T+ ++ I T F + ++R++
Sbjct: 414 ERGAEAAL--AAALAHISGATEIKTRSLLSSMADYTTLHIKVETEIRTKGFVWTLIRKYF 471
Query: 542 PEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQERE 598
PE+ +KG+ L D G+VFDVP +D + +++ V++EV K+LP L+ +E
Sbjct: 472 PEDAHNEIKGLRLQKDKQGSVFDVPTKMVDGIMAAWNDSPTVTMEVCKELPELEAQE 528
>gi|149038677|gb|EDL92966.1| rCG22008, isoform CRA_c [Rattus norvegicus]
Length = 638
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 256/616 (41%), Positives = 341/616 (55%), Gaps = 80/616 (12%)
Query: 92 EPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
E E VE++E A S F IS + LK++G+ LFPIQA TF V G DL+
Sbjct: 28 EKEIPVEQKE-------GAFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIA 80
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVY 210
+ARTG GKT +F +P++E L G + + GRAP VLVL PTRELA QV +DF D+
Sbjct: 81 QARTGTGKTFSFAIPLIEKLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI- 135
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
L+ C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE
Sbjct: 136 --TKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEV 193
Query: 271 DEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG 327
D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +DL+G
Sbjct: 194 DQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIG 253
Query: 328 NEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD---LL 383
+ KA+ V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+ +
Sbjct: 254 KKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIK 313
Query: 384 PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+Y
Sbjct: 314 QDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESY 373
Query: 444 IHRSGRTGRAG--------------------------------VEAAETITQVS------ 465
IHRSGRTGRAG V +A I + S
Sbjct: 374 IHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIR 433
Query: 466 --DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTV 519
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S VT+
Sbjct: 434 LLDSVPPTAIGHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSQAGFVTM 491
Query: 520 VLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADN 579
+L + S+A+ L+ L E VKGM G FDV + + +
Sbjct: 492 ILRCSVEMPNISYAWKELKEQLGESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIKEKWHD 551
Query: 580 AANVSLEVLKQLPPLQEREQSRGRFGGGGRGGFGGRGGNR--FSGGRGGGFSDRRNDRFS 637
+ L V + P L+ + G RGG G R G+R F G RGG + R +
Sbjct: 552 SRRWQLTVATEQPELEGPPE-------GYRGGRGQRDGSRGSFRGQRGGSRNFRGQGQRG 604
Query: 638 G--GFRGSKGRGGGNR 651
G FRG + GGGN+
Sbjct: 605 GSRNFRGQRP-GGGNK 619
>gi|326923424|ref|XP_003207936.1| PREDICTED: hypothetical protein LOC100542017, partial [Meleagris
gallopavo]
Length = 1461
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 227/553 (41%), Positives = 310/553 (56%), Gaps = 61/553 (11%)
Query: 98 EEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQ 157
+EQE E + A S F IS + L+++G+ LFP+Q TF V G D++ +A+TG
Sbjct: 859 QEQEMTEEQKEGAFSNFPISKGTVQLLQARGVTYLFPVQVKTFHPVYSGKDVIAQAQTGT 918
Query: 158 GKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGL 216
GKT +F +P++E L S++ GR+P VLVL PTRELA QV +DF D+ L
Sbjct: 919 GKTFSFAIPLIEKLQAD----SQERRRGRSPKVLVLAPTRELANQVAKDFKDI---TRKL 971
Query: 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276
T C YGG PY+ Q ++ GID+++GTPGRIKDH++ G +DL+ +K VLDE D+ML M
Sbjct: 972 TVACFYGGTPYNGQIDLIRSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDM 1031
Query: 277 GFVEDVELIL---GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
GF E VE IL K + + QTLLFSAT P+WV ++ K++KS + +DL+G KA
Sbjct: 1032 GFAEQVEDILRVAYKKDSEDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRRTQKA 1091
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARAL 389
+T V H+ + C S R+ VI D+I+ YS S GRTI+F ETK+ A++LA + ++L
Sbjct: 1092 ATTVEHLAIECHWSQRAAVIGDVIQVYSGSHGRTIVFCETKKDANELALNASIKQDCQSL 1151
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGR
Sbjct: 1152 HGDIPQKQREITLKGFRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGR 1211
Query: 450 TGRAG--------------------------------------------VEAAETITQVS 465
TGRAG +A + V
Sbjct: 1212 TGRAGRTGICICFYQRKEENQLRYVEQKAGITFKRVGVPTATDIIKASSKDAIRCLDSVP 1271
Query: 466 DSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGK 525
S I FK +A+ L+ G A LA ALA G T I+ RSLL+S VT++L +
Sbjct: 1272 QSAIDYFKESAQLLIEEKGPVNA--LAAALAHISGATSIEQRSLLNSDVGFVTMILRCSE 1329
Query: 526 PIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSL 585
I S+ + LR L + V M G FD+P AD +++ L
Sbjct: 1330 EINNMSYVWRKLREQLGGDVDRKVNRMCFIKGRMGVCFDIPAADQKDIEERWEDSKQCCL 1389
Query: 586 EVLKQLPPLQERE 598
V +LP L+E +
Sbjct: 1390 CVANELPELEESQ 1402
>gi|260830758|ref|XP_002610327.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
gi|229295692|gb|EEN66337.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
Length = 655
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 224/558 (40%), Positives = 318/558 (56%), Gaps = 70/558 (12%)
Query: 94 EAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
E G +E G+ E+ FRI+ KLK++ + LFP+Q TFD V DG D++ +A
Sbjct: 81 ENGTITKEEGDFEN------FRITAQTVTKLKARNVVKLFPVQYSTFDFVYDGWDVITQA 134
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
RTG GKTLAF +P++E L + GRAP V+VL PTRELA QV+EDF +
Sbjct: 135 RTGTGKTLAFSIPLVERLQKDGVSIKR----GRAPVVIVLAPTRELAIQVYEDFKSI--S 188
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
LTS C+YGG PY Q + +G+D+++GTPGRI+DH+ G ++LS L+ VLDE D M
Sbjct: 189 TKLTSFCVYGGTPYPPQNDAINRGLDILVGTPGRIQDHVRSGRLNLSELRHVVLDEVDRM 248
Query: 274 LRMGFVEDVELIL----GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE 329
L MG VE V+ IL K + + QTL FSATLP+WV + K++K++ K +D++G E
Sbjct: 249 LEMGMVEQVDEILEAAYKKDDKSQNPQTLFFSATLPNWVHEAARKYMKAEPKHVDMIGTE 308
Query: 330 KMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLPG--- 385
+ +++T V H+ + C AR+ VI DII YS GR ++F ETK+ A+QL +L G
Sbjct: 309 QNRSATTVEHLAIRCGWQARAPVIADIITMYSGQHGRAMVFCETKKEANQL--VLEGVLK 366
Query: 386 --ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
A+ LHGDI Q+QRE+TL FR G LVAT+VAARGLDI +V L++QCEPP DV++Y
Sbjct: 367 QEAQVLHGDIPQAQRELTLKSFRDGNIQVLVATDVAARGLDIPEVDLVVQCEPPSDVDSY 426
Query: 444 IHRSGRTGRAG--------------------------------------------VEAAE 459
IHRSGRTGRAG ++A
Sbjct: 427 IHRSGRTGRAGRTGVCVCFYKPNREQDLRFVERRAGIKFRQINAPQPDDIVKAAANDSAR 486
Query: 460 TITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTV 519
I +V D ++ F+ AAE+L+ G A A A+ G +EIK RSLL++ E T+
Sbjct: 487 AIEEVPDKMLTHFQEAAEKLIAEKGAVNAVAAALAVMS--GSSEIKKRSLLNADEGFTTM 544
Query: 520 VLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADN 579
+ +P+ + + ++R E+ + V+GM + + G FDVP + D F
Sbjct: 545 LFHTDRPVRGKGYFWTAIKRRFGEDIDQNVRGMTMFTNNKGVAFDVPSSMEDQFVDTFQG 604
Query: 580 AANVSLEVLKQLPPLQER 597
+ + LEV +LP L++R
Sbjct: 605 SYDSRLEVATELPDLEQR 622
>gi|328774195|gb|EGF84232.1| hypothetical protein BATDEDRAFT_84954 [Batrachochytrium
dendrobatidis JAM81]
Length = 764
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 245/639 (38%), Positives = 350/639 (54%), Gaps = 95/639 (14%)
Query: 45 KKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQE--- 101
K K+S +KR S+ E+ S+ +++ + L+ K K +A E VE+Q
Sbjct: 72 KSKDSKRKRSSSD----EDSSKPTADDDKATKLR--KVSKNDDEATKESAVIVEDQHIDD 125
Query: 102 ------RGESEHPNAV--SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
+ ES+ P + S +S+ E LK++GI LFPIQA +FD ++ G DL+GRA
Sbjct: 126 YKSSTKKEESDIPVNLRLSSHNLSLSTIESLKARGIVQLFPIQAASFDPIIKGMDLLGRA 185
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGY---GRAPSVLVLLPTRELAKQVHEDFDVY 210
RTG GKTLAF LP++E L + S + + GRAP VL++ PTRELA QVH +FD
Sbjct: 186 RTGTGKTLAFSLPMIEVLKR--ERESNRHLFSQRGRAPRVLIMAPTRELAMQVHREFDSI 243
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
L S C YGG+PY +Q ++ GIDV++GTPGR+ DHIERG + L+ L+F LDEA
Sbjct: 244 SSG-ELKSTCAYGGSPYDSQCNAMRDGIDVIVGTPGRLIDHIERGTLKLNQLRFICLDEA 302
Query: 271 DEMLRMGFVEDVELILGKVE-------DANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
D+ML +GF E +E IL +V+ DA Q LLFSAT+P W+K +K++K +K T+
Sbjct: 303 DQMLDIGFAESMEKILQQVQEQKSKLTDAPDHQVLLFSATMPVWIKQAVSKYMKPNKVTL 362
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG--RTIIFTETKESASQLA- 380
DL+G +K K S V+H + RS ++ DI+ Y GG RTIIF ETK A++LA
Sbjct: 363 DLIGTDKQKTSATVKHYAIASHWQNRSALLGDIVAIYGRGGAGRTIIFVETKGEANELAM 422
Query: 381 -DLLP--GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
D L G + LHGDIQQ QREVT+ GFR GKF +L+ TNV ARG+DI +V L+I CEPP
Sbjct: 423 NDKLVTMGTQVLHGDIQQKQREVTMQGFREGKFTSLITTNVCARGVDIPEVDLVINCEPP 482
Query: 438 RDVEAYIHRSGRTGRAG-----------------------------------------VE 456
DVE+YIHRSGRTGRAG
Sbjct: 483 SDVESYIHRSGRTGRAGKSGICVTFYKPNQEYALQNIARHAGVNFIKIGAPQPKDIVAAR 542
Query: 457 AAETI----TQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTE-IKSRSLLS 511
A++T+ T + + V+ F + A ++L + A + L+ LA T+ + +RS+LS
Sbjct: 543 ASDTLETVKTDLDERVLEYFTNCAGDILEHFQGDAIKALSATLAVLCNTTKPLATRSILS 602
Query: 512 SLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLD 571
+ E +T++ PI + +++R + K E V G +T D G V DV +
Sbjct: 603 ANEGFITLLFTVDSPIQNVGYIKSIIQRNHSDVKYEDVVGWRMTNDSMGVVVDVIAEKIQ 662
Query: 572 LFRSGA-------------DNAANVSLEVLKQLPPLQER 597
+ +G+ + VSL + +LP +Q+R
Sbjct: 663 VIDNGSGIPPTIKLGSNIWSDGRGVSLTIPTELPEMQDR 701
>gi|387018184|gb|AFJ51210.1| Nucleolar RNA helicase 2-like [Crotalus adamanteus]
Length = 701
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 250/618 (40%), Positives = 342/618 (55%), Gaps = 76/618 (12%)
Query: 79 SEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAM 138
S+KE + + E E+ ++QE + A + F IS + LK++G+ LFP+Q
Sbjct: 101 SKKENNSSEDSHTECESD-QDQELTAEQKEGAFANFDISKATVDLLKARGVSYLFPVQVK 159
Query: 139 TFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198
TF +L+G D++ +ARTG GKT +F +P++E L P + + GR+P VLVL PTRE
Sbjct: 160 TFMPILEGKDVIAQARTGTGKTFSFAIPLIEKLDRDPQERKR----GRSPKVLVLTPTRE 215
Query: 199 LAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI 257
LA QV DF D+ LT C YGG Y+ Q ++ GID+++GTPGRIKDH++ +
Sbjct: 216 LAMQVARDFKDI---TKKLTVACFYGGTAYNGQLDLIRNGIDILVGTPGRIKDHLQNNKL 272
Query: 258 DLSSLKFRVLDEADEMLRMGFVEDVELIL---GKVEDANKVQTLLFSATLPSWVKHISTK 314
D+S L+ VLDE D+ML MGF E VE IL K + + QTLLFSAT P WV +++ K
Sbjct: 273 DISKLRHVVLDEVDQMLDMGFAEQVEEILVNSYKKDSEDNPQTLLFSATCPQWVYNVAKK 332
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETK 373
++KS + DL+G + K +T V H+ + C S R+ VI D+I+ YS S GRTIIF ETK
Sbjct: 333 YMKSKYEQFDLIGKKTKKTATTVEHLAIECHWSQRAAVIGDVIQVYSGSHGRTIIFCETK 392
Query: 374 ESASQL---ADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430
+ A++L A + A++LHGDI Q QREVTL GFR+G F LVATNVAARGLDI +V L
Sbjct: 393 KEATELALNASIKQDAQSLHGDIPQKQREVTLKGFRNGAFEVLVATNVAARGLDIPEVDL 452
Query: 431 IIQCEPPRDVEAYIHRSGRTGRA--------------------------------GVEAA 458
+IQ PP+DVE+YIHRSGRTGRA GV A
Sbjct: 453 VIQSSPPKDVESYIHRSGRTGRAGRTGLCICFYQRREDYQLKQVEQKAGITFKRVGVPTA 512
Query: 459 ETITQVS--------DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKS 506
I + S DSV P+ F+ +AE+L+ G A E LA ALA G T I+
Sbjct: 513 TDIIKASSKDAIRSLDSVPPSAIDYFRQSAEQLIEEKG--AVEALAAALAHISGATSIEQ 570
Query: 507 RSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVP 566
RSLL+S +VT++L+ ++ +A+ L+ L E+ + M G FD+P
Sbjct: 571 RSLLNSDVGYVTMILQCSVEMHATGYAWRGLKEQLGEDIDNKISRMCFLKGKMGVCFDIP 630
Query: 567 VADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRGGFGGRGGNRFSGGRGG 626
A+L+ + N L V +LP L+ + GG R G R G
Sbjct: 631 KAELNKIKETWQNTRRWELSVATELPDLENSPRE-----GGRSPAMEFRNGR-----RNG 680
Query: 627 GFSDRRNDRFSGGFRGSK 644
GF+ R DRF RG K
Sbjct: 681 GFN--RQDRFRN--RGQK 694
>gi|149511215|ref|XP_001519332.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ornithorhynchus
anatinus]
Length = 790
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 243/595 (40%), Positives = 322/595 (54%), Gaps = 66/595 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS LK +G+ LFPIQ TF V +G D+V +ARTG GKT +F +P+ E
Sbjct: 183 AFSNFPISEQTIRLLKDRGVTYLFPIQVKTFHHVYEGRDVVAQARTGTGKTFSFAIPLTE 242
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L + +K GY P VLVL PTRELA QV +DF D+ LT C YGG PY+
Sbjct: 243 KLQR--KREEQKRGY--PPKVLVLTPTRELANQVAKDFKDI---TRTLTVACFYGGTPYN 295
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q ++KGID+++GTPGRIKDH+E G +DL+ L VLDE D+ML MGF EDVE I+
Sbjct: 296 GQIDLIRKGIDILVGTPGRIKDHLESGRLDLTKLYHVVLDEVDQMLDMGFAEDVEKIISG 355
Query: 289 V---EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
E + QTLLFSAT P WV ++ K++K+ + +DL+G KA+T V H+ + C
Sbjct: 356 AYNRESEDNPQTLLFSATCPQWVYKVAKKYMKAKYEQVDLIGKLTQKAATTVEHLAIQCR 415
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
+ R+ VI D+I+ YS + GR I+F ETK+ A+++A ++ A+ALHGDI QSQRE+T
Sbjct: 416 ENQRAAVIGDVIQVYSGNQGRAIVFCETKKDATEMALNSNIKQEAQALHGDIAQSQREIT 475
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR+G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 476 LKGFRNGVFKVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICIC 535
Query: 455 ------------VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGY- 501
VE IT IP+ + ++ S A + +AL K Y
Sbjct: 536 FFQPRERCQLRYVEQKSGIT-FKHVNIPSLVDIIQASSKDAISSLASVPLEALEKFRTYA 594
Query: 502 -----------------------TEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLR 538
+ + RSL+SS + VTV L+ + + S A LR
Sbjct: 595 KTLIEEKGAVEALAAALAHIAGASSFQQRSLISSDKGFVTVALKCSEELKHTSAAQTELR 654
Query: 539 RFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQERE 598
L + V M L G FDVP A +D ++ ++ L + +QLP L+
Sbjct: 655 AKLTADLAAQVTRMCLLKGKRGVCFDVPSAQVDQIKAEWKDSEKWKLSLPQQLPELERDY 714
Query: 599 QSRGRFGGGGRGGFGGR--GGNRFSGGRGGGFSDRRNDRFSGGFRGSKGRGGGNR 651
GRF F R GNR RG +R+ +R RG RGG NR
Sbjct: 715 DDGGRF-----SNFRQRVQHGNRLGAFRGNRQGNRQGNRMGNHPRGGFNRGGFNR 764
>gi|384496820|gb|EIE87311.1| hypothetical protein RO3G_12022 [Rhizopus delemar RA 99-880]
Length = 665
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 246/622 (39%), Positives = 336/622 (54%), Gaps = 78/622 (12%)
Query: 36 EKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEA 95
E SD++ K K+ S+KR + +E +S S E PV E + KK+ VE
Sbjct: 9 EDRSDRRDKKDKQRSRKR-----DRDERKSSPSQEESTPVPSSPVPEPESKKRKVVE--- 60
Query: 96 GVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRART 155
E S+ A+S FRIS E L+ KGI SLF IQA TFD + DG D++ RART
Sbjct: 61 -----ETDNSDEKLALSNFRISEGTIENLEKKGISSLFEIQAATFDTIYDGKDVLARART 115
Query: 156 GQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG 215
G GKTLAF +P++E L ++ GR+P VLVL PTR+LAKQV DF+ G
Sbjct: 116 GTGKTLAFAIPVVERLALDKNYRERR---GRSPRVLVLCPTRDLAKQVCGDFEQVSGN-R 171
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L + +YGG PY+ Q ++G+DVV+GTPGRI DHI+ GN+ L LKF VLDEADEML
Sbjct: 172 LKTLPVYGGVPYNEQTSVFREGVDVVVGTPGRILDHIKFGNMKLHDLKFIVLDEADEMLD 231
Query: 276 M-GFVEDVELILGKVEDANKV---QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKM 331
GF ED+ +L +++ + QTLLFSAT+P V +FLK D + IDL+GN K
Sbjct: 232 ARGFEEDMFNLLSSIQEQKETRDYQTLLFSATVPESVMQTIQRFLKEDYERIDLIGNAKN 291
Query: 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA---DLLPGARA 388
+ +TN+RHI +P S R+ +I D++ Y G T+IF TK A++L + A
Sbjct: 292 RTNTNIRHIAMPSSYHTRADIIGDVVNVYGRSGLTVIFCATKADANELGAHDKIKQDAAV 351
Query: 389 LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSG 448
LHGDI Q+ RE T+ FR GK+ +V T+V ARGLDI V L+I C+PP+D E Y+HRSG
Sbjct: 352 LHGDIAQASREATMKAFREGKYKCIVCTDVLARGLDIPQVDLVINCQPPKDPETYVHRSG 411
Query: 449 RTGRAG---------------------------------------VEAA-----ETITQV 464
RTGRAG +EA ++I V
Sbjct: 412 RTGRAGRSGVCVTFYKPAEEGLLSYISKRTGVQFEQLSAPRPEDIIEATTEDAFKSIDLV 471
Query: 465 SDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEA 523
V+P F+ A+EL++ G A A A GY + + SRSLL+S E T++L+
Sbjct: 472 KPDVLPFFEKPAQELIDKHGALNAVAAALAF--MTGYHQGVPSRSLLTSQEGQTTLLLQL 529
Query: 524 GKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG------- 576
I P + ++ R PE + VKG +T D G VFD+ + ++ G
Sbjct: 530 SYTIQHPGYVRNIISREYPELGYDDVKGWRMTEDSMGVVFDIKSSRCEVKEDGEVLLVGR 589
Query: 577 ADNAANVSLEVLKQLPPLQERE 598
A N++L K LP LQ+R+
Sbjct: 590 PWTAHNITLSAPKSLPTLQDRD 611
>gi|301111464|ref|XP_002904811.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262095141|gb|EEY53193.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 681
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 233/601 (38%), Positives = 336/601 (55%), Gaps = 82/601 (13%)
Query: 57 EIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRI 116
E +EE ++ + E GE SE E KKAK E V G E+P ++ FRI
Sbjct: 65 EADEENNDTDPAEETGE-----SEVEAPAAKKAKNENATHV-----GGEENP-SLDNFRI 113
Query: 117 SVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPT 176
++ L+++GI +LFPIQAMTFD ++DG DL+GRARTG GKTLAF LP++E L
Sbjct: 114 CDETKKNLQARGIHTLFPIQAMTFDKIVDGKDLMGRARTGMGKTLAFALPVIELLLQDKR 173
Query: 177 KASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
++ V+ + PTRELAKQV +F++ G + L++ C+YGGA Y +Q +
Sbjct: 174 PRARGRAP----RVVCMAPTRELAKQVATEFELTGPS--LSTVCIYGGASYQSQNNAFRS 227
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG-----KVED 291
G+D+++GT GR+ DHI+RGN+ L + +F +LDEAD ML MGF EDV+ + K E
Sbjct: 228 GVDILVGTTGRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFTAMDQVKNES 287
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
K QTLLFSAT+P WVK ++ K++K + ++LV + +AST+V+HI +PC R
Sbjct: 288 TGKRQTLLFSATIPKWVKDVADKYMKK-AEYVNLVKDSDDQASTDVQHIAIPCHWQGRPT 346
Query: 352 VIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRS 407
++ +++ Y+ RTIIF ETK+ ++LA ++ + LHGDI Q QRE T+ FR
Sbjct: 347 LLANLLGVYAKKDSRTIIFAETKKDCNELAVHPEIKTDCQVLHGDIAQEQRETTMKAFRE 406
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGRAG------- 454
G+ L+AT+VAARGLD+N V L+I EPPR DV+ Y+HRSGRTGRAG
Sbjct: 407 GRLRLLIATDVAARGLDMN-VDLVINSEPPRKMSGMADVDTYVHRSGRTGRAGKKGICIT 465
Query: 455 -------------------------------------VEAAETITQVSDSVIPAFKSAAE 477
+A + I V S+I F+ A
Sbjct: 466 LYTNRQRDQLNQIERKIGNKFIMKGPPDQEDLIKASAAKALKEIDNVDPSMIEIFQEKAR 525
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSR-SLLSSLEDHVTVVLEAGKPIYTPSFAFGV 536
ELL + + LA ALA G+T+ R SL+S + D+VTV+ + I + +
Sbjct: 526 ELLET--MEPEKCLAAALACITGHTKPPRRTSLMSGVPDYVTVLFTSSNFIRAKGYVWNA 583
Query: 537 LRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAA-NVSLEVLKQLPPLQ 595
+ R +PEE + +K M LT D GA FD+P+A L+L + + + N + K LP LQ
Sbjct: 584 VNRDIPEEISKDIKQMTLTEDAMGACFDLPIAGLELLETQMEESGMNCPYSIPKTLPKLQ 643
Query: 596 E 596
+
Sbjct: 644 Q 644
>gi|449667535|ref|XP_002167654.2| PREDICTED: nucleolar RNA helicase 2-like [Hydra magnipapillata]
Length = 685
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 235/621 (37%), Positives = 342/621 (55%), Gaps = 74/621 (11%)
Query: 86 KKKAKVEPEAGVEEQER--GESEHPNA-VSRFRISVPLREKLKSKGIESLFPIQAMTFDM 142
K+ ++P VEE+E GE E ++RF IS KL + GI++ FP+Q+ T++
Sbjct: 30 KRLYSLQPVFQVEEKENNVGEREADKGDLNRFEISKSTMTKLNAIGIKAFFPVQSTTYNA 89
Query: 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202
+ +GSD++ +ARTG GKTLAF LP++E L + T GR P VL L PTRELA Q
Sbjct: 90 IFEGSDVIVQARTGTGKTLAFTLPVIERLN-----SENLTERGRVPLVLALAPTRELAMQ 144
Query: 203 VHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262
++++ + + + C YGG+ Y QE +L++G+D ++GTPGRI D I+RG +DL+ L
Sbjct: 145 IYQEVEKFKPN-NVQVSCFYGGSSYEKQEGELRRGVDFLVGTPGRIADLIQRGVLDLTKL 203
Query: 263 KFRVLDEADEMLRMGFVEDVELIL-GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
K +LDEAD M+ MGF +DVE IL A K T LF T+P W++ S K+L S+ K
Sbjct: 204 KHVILDEADRMMDMGFQDDVEKILKHSYTSARKPPTFLFFGTVPPWLQQNSKKYLSSNLK 263
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLA 380
DL+G +K K +T V+H V+ CS R +I DI++ YS G+TIIFT TK+ A++L+
Sbjct: 264 VFDLIGEDKNKGATPVQHKVIKCSYWERPLLIKDIMQLYSGKFGKTIIFTTTKQEANELS 323
Query: 381 --DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR 438
+P ++ LHGDI QSQRE+TL GFR+GKF L+AT+VAARGLDI +V L+IQ EPP
Sbjct: 324 VESSIPDSQVLHGDISQSQREITLQGFRNGKFNCLIATDVAARGLDIPEVDLVIQTEPPN 383
Query: 439 DVEAYIHRSGRTGRAGV------------------------------------------- 455
D++ YIHR+GRTGRAG
Sbjct: 384 DIDFYIHRAGRTGRAGRSGVCVVFYKPGQESEIAAVEKRTGVTFEKITPPNPEEIVSSCA 443
Query: 456 -EAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLE 514
+A ++ +V+ VI F A EL+ G A A A G TE+ +RSLL+S +
Sbjct: 444 DDAIRSLEKVNSDVISFFIKPARELIEKKGAEEALAAALAYVS--GTTELANRSLLTSRK 501
Query: 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFR 574
+ T +++ + P+ + +LRR+ +E + +KGM + D G VFDVP + + +
Sbjct: 502 GYTTYLMKQPVQLRNPTLIWNILRRYFDDEFIAGIKGMRMCQDKLGCVFDVPTEKISVIK 561
Query: 575 SGADNAANVSLEVLKQLPPLQE----REQS-------RGRFGGGGRGGFGGRGGNRFSGG 623
+LE L +LP L E +E S + F G G + GR N +
Sbjct: 562 EVWKGDRYATLEKLSKLPDLIEYSAPKEYSSETMSLKKNVFRNYG-GNYKGRENNSYQ-- 618
Query: 624 RGGGFSDRRNDRF-SGGFRGS 643
G + R N + +RG+
Sbjct: 619 HGDSYKGRENSSYQQNNYRGN 639
>gi|440791138|gb|ELR12392.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 723
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 226/542 (41%), Positives = 325/542 (59%), Gaps = 60/542 (11%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S FRIS + L+ +G + LF IQA T+D + DG D++GRARTG GKTL+FVLP++E +
Sbjct: 119 SDFRISPTTVKLLQDRGFKCLFAIQAQTYDHIYDGKDIIGRARTGSGKTLSFVLPVVEKI 178
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ T YGR P V+ L PTRELA+Q+ ++FD+ A L + C+YGGAPY QE
Sbjct: 179 FIDMAGKPRST-YGRPPKVVCLSPTRELARQIAKEFDLV--APSLKAVCVYGGAPYTPQE 235
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
LK+G+D+VIGTPGR+ D ++R + L+ +K+ +LDEADEML +GF + V+ IL
Sbjct: 236 NALKRGVDIVIGTPGRVIDMLDRNCLKLTDVKYVILDEADEMLNIGFADAVDKILASAPK 295
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLK-SDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
++ QTLLFSAT+P WV+ I+ K ++ S+ T+DLVGN K+KA+ VRH+ + C R
Sbjct: 296 PDERQTLLFSATIPPWVQGIAQKHMRPSNLITVDLVGNSKLKAALTVRHLAICCPPPVRI 355
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRS 407
+ D+++ Y+ GRTI+F TK ++LA + + LHGDI Q QRE+TL GFR
Sbjct: 356 STMADVVKVYAGTGRTIVFANTKAEVNELAMKSSISNVCQVLHGDIAQKQREITLQGFRE 415
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------- 454
G+F LVAT+VAARGLDI+DV L+IQ + P+D E YIHRSGRTGRAG
Sbjct: 416 GRFSCLVATDVAARGLDIDDVDLVIQTQAPKDKETYIHRSGRTGRAGKSGICVTFFTRRD 475
Query: 455 --------VEAA-------------------------ETITQVSDSVIPAFKSAAEELLN 481
+E+A E + V D +I AF +AE+L+
Sbjct: 476 VRDGNLKWLESAVGAKFELIGTPQQPDLIRVATDAVEEKLEHVHDEMIKAFLPSAEKLIQ 535
Query: 482 NSGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRF 540
G + E LA ALA GYT+ ++ RSLLSS E + TV+L+ PI + F ++++F
Sbjct: 536 EKGEN--EALAAALAVISGYTQPLQKRSLLSSTEGYSTVLLKNSLPIRGVGWVFMIIKKF 593
Query: 541 LPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRS-GADNAANVSLEVLKQLPPLQERE 598
L +E VK + D + AV ++P A + L S G N +++ ++PPL+E +
Sbjct: 594 LGDEIEGQVKDIEFCQDEHCAVAELPQALAVKLVESRGIPNGLEITIP--NEIPPLKENQ 651
Query: 599 QS 600
++
Sbjct: 652 RA 653
>gi|395820929|ref|XP_003783808.1| PREDICTED: nucleolar RNA helicase 2 [Otolemur garnettii]
Length = 769
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 258/661 (39%), Positives = 349/661 (52%), Gaps = 89/661 (13%)
Query: 64 RSETSSELGE---PVNLKSEKEKKKKKKAKV----------EPEAGVEEQERGESE---- 106
RSE SE+ + P +K EKE + AK EP++ E ES
Sbjct: 116 RSEEPSEVDDAPKPKRMKKEKEVNGEIVAKTPELKNGFSHSEPDSNSVEAASEESNSEIE 175
Query: 107 ----HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
H N S F+I +G+ LFPIQA TF V G DL+ +ARTG GKT +
Sbjct: 176 QVKLHFNHFSHFKIYNNTVNLFTGRGVTFLFPIQARTFHHVYSGKDLIAQARTGTGKTFS 235
Query: 163 FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCL 221
F +P++E L G + K+ GR+P VLVL PTRELA QV +DF D+ L C
Sbjct: 236 FAIPLIEKL-QGELQDRKR---GRSPQVLVLAPTRELANQVSKDFSDI---TKKLAVACF 288
Query: 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281
YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF +
Sbjct: 289 YGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQ 348
Query: 282 VELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338
VE IL K + + QTLLFSAT P WV +++ K++K + +DL+G + K + V
Sbjct: 349 VEDILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKPTYEQVDLIGKKTQKTAITVE 408
Query: 339 HIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD---LLPGARALHGDIQ 394
H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI
Sbjct: 409 HLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTAIKQDAQSLHGDIP 468
Query: 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA- 453
Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRA
Sbjct: 469 QKQREITLKGFRNGAFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAG 528
Query: 454 -------------------------------GVEAAETITQVS--------DSVIPA--- 471
GV + I + S DSV P
Sbjct: 529 RTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSPTEIIKASSKDAIRLLDSVPPTAIN 588
Query: 472 -FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTP 530
FK +AE+L+ G A E LA ALA G T + RSL++S VT++L +
Sbjct: 589 HFKESAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSDVGFVTMILRCSIEMPNI 646
Query: 531 SFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQ 590
S+A+ L+ L E+ VKGM G FD+P A + + ++ L V +
Sbjct: 647 SYAWKELKEQLGEDIDSKVKGMVFLKGKLGVCFDIPTASVTEIQEKWHDSRRWQLAVATE 706
Query: 591 LPPLQEREQSRGRFGGGGRGGFGGRGGNRFSGGRGGGFSDRRNDRFSGGFRGSKGRGGGN 650
P L+ ++ G R G R GNR GR G + R R GG R ++ + G
Sbjct: 707 QPELEGPKE-------GYRAFRGQREGNRNFRGRREGNRNFRGQRSGGGNRSNRSQNKGQ 759
Query: 651 R 651
+
Sbjct: 760 K 760
>gi|344237686|gb|EGV93789.1| Nucleolar RNA helicase 2 [Cricetulus griseus]
Length = 729
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 245/571 (42%), Positives = 320/571 (56%), Gaps = 70/571 (12%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 139 AFSNFPISQETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 198
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + GRAP VLVL PTRELA QV DF D+ L+ C YGG PY
Sbjct: 199 KLQGGLQDKKR----GRAPQVLVLAPTRELANQVSNDFSDI---TKKLSVACFYGGTPYG 251
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q ++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 252 GQIDCIRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 311
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 312 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 371
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
S R+ VI D+IR YS GRTIIF ETK A +L+ + A++LHGDI Q QRE+T
Sbjct: 372 WSERAAVIGDVIRVYSGHQGRTIIFCETKREAQELSQNTCIKQDAQSLHGDIPQKQREIT 431
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG
Sbjct: 432 LKGFRNGSFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 491
Query: 455 ------------VE--------------AAETITQVS-------DSVIPA----FKSAAE 477
VE AAE I S DSV P FK +AE
Sbjct: 492 FYQHKDEYQLAQVEQKAGIKFKRIGVPSAAEIIKASSKDAIRLLDSVPPTAIDHFKQSAE 551
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
+L+ G A E LA ALA G T + RSL++S VT++L ++ S+A+ L
Sbjct: 552 KLIEEKG--AVEALAAALAHISGATSVDQRSLINSQAGFVTMILRCSIEMHNISYAWKEL 609
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQER 597
+ L E V+GM G FDV + + ++ L V + P L+
Sbjct: 610 KEQLGESIDAKVRGMVFLKGKLGVCFDVRTEAVTEIQEKWRDSRRWQLTVATEQPELEGP 669
Query: 598 EQSRGRFGGGGRGGFGGRGGNR--FSGGRGG 626
++ G RGG G R G+R F G RGG
Sbjct: 670 KE-------GYRGGRGQRDGSRGAFRGQRGG 693
>gi|354475482|ref|XP_003499957.1| PREDICTED: nucleolar RNA helicase 2-like [Cricetulus griseus]
Length = 806
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 245/571 (42%), Positives = 320/571 (56%), Gaps = 70/571 (12%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 216 AFSNFPISQETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 275
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + GRAP VLVL PTRELA QV DF D+ L+ C YGG PY
Sbjct: 276 KLQGGLQDKKR----GRAPQVLVLAPTRELANQVSNDFSDI---TKKLSVACFYGGTPYG 328
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q ++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 329 GQIDCIRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 388
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 389 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 448
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
S R+ VI D+IR YS GRTIIF ETK A +L+ + A++LHGDI Q QRE+T
Sbjct: 449 WSERAAVIGDVIRVYSGHQGRTIIFCETKREAQELSQNTCIKQDAQSLHGDIPQKQREIT 508
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG
Sbjct: 509 LKGFRNGSFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 568
Query: 455 ------------VE--------------AAETITQVS-------DSVIPA----FKSAAE 477
VE AAE I S DSV P FK +AE
Sbjct: 569 FYQHKDEYQLAQVEQKAGIKFKRIGVPSAAEIIKASSKDAIRLLDSVPPTAIDHFKQSAE 628
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
+L+ G A E LA ALA G T + RSL++S VT++L ++ S+A+ L
Sbjct: 629 KLIEEKG--AVEALAAALAHISGATSVDQRSLINSQAGFVTMILRCSIEMHNISYAWKEL 686
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQER 597
+ L E V+GM G FDV + + ++ L V + P L+
Sbjct: 687 KEQLGESIDAKVRGMVFLKGKLGVCFDVRTEAVTEIQEKWRDSRRWQLTVATEQPELEGP 746
Query: 598 EQSRGRFGGGGRGGFGGRGGNR--FSGGRGG 626
++ G RGG G R G+R F G RGG
Sbjct: 747 KE-------GYRGGRGQRDGSRGAFRGQRGG 770
>gi|417412883|gb|JAA52800.1| Putative nucleolar rna helicase 2, partial [Desmodus rotundus]
Length = 840
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 257/645 (39%), Positives = 344/645 (53%), Gaps = 98/645 (15%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 203 SELEQEIPVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKD 255
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV +DF
Sbjct: 256 LIAQARTGTGKTFSFAIPLIEKLL-GELQERKR---GRAPQVLVLAPTRELANQVSKDFI 311
Query: 208 DVYGGAVGLTSCCLYGGAPY-----------------------H----AQEFKLKKGIDV 240
D+ L C YGG PY H Q +++ GID+
Sbjct: 312 DI---TKKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLXYGGQLERMRNGIDI 368
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQT 297
++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL K + + QT
Sbjct: 369 LVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQT 428
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LLFSAT P WV +++ K++KS + +DL+G + K + V H+ + C + R+ VI D+I
Sbjct: 429 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 488
Query: 358 RCYSS-GGRTIIFTETKESA---SQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTL 413
R YS GRTIIF ETK+ A SQ A + A++LHGDI Q QRE+TL GFR+G F L
Sbjct: 489 RVYSGFHGRTIIFCETKKEAQELSQNASIRQDAQSLHGDIPQKQREITLKGFRNGDFGVL 548
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------------- 454
VATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG
Sbjct: 549 VATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQ 608
Query: 455 -------------VEAAETITQVS--------DSVIPA----FKSAAEELLNNSGLSAAE 489
V +A I + S DSV P FK +AE+L+ G A E
Sbjct: 609 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKG--AVE 666
Query: 490 LLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELV 549
LA ALA G T + RSL++S VT++L+ + S+A+ L+ L EE V
Sbjct: 667 ALAAALAHISGATSVDQRSLINSESGFVTMILKCSIEMPNISYAWKELKEQLGEEIDSKV 726
Query: 550 KGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGRFGG--- 606
KGM G FDV A + + ++ L V + P L+ + F G
Sbjct: 727 KGMVFLKGKQGVCFDVRTAAVTEIQEKWHDSRRWQLSVATEQPELEGPREGYRNFRGQRE 786
Query: 607 GGRGGFGGRGGNRFSGGRGGGFSDRRNDRFSGGFRGSKGRGGGNR 651
G RG G R GNR G+ G + R R GG R ++ + G +
Sbjct: 787 GNRGHRGQREGNRNFRGQREGSRNFRGQRSGGGSRNNRFQNKGQK 831
>gi|449504709|ref|XP_002190981.2| PREDICTED: nucleolar RNA helicase 2-like [Taeniopygia guttata]
Length = 716
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 224/539 (41%), Positives = 309/539 (57%), Gaps = 61/539 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + L+++G+ LFP+Q TF+ V G D++ +ARTG GKT +F +P++E
Sbjct: 137 AFSNFSISKETVQLLQARGVTYLFPVQVKTFNPVYTGKDVIAQARTGTGKTFSFAIPLIE 196
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G ++ ++ GR P VLVL PTRELA QV +DF D+ LT C YGG PY+
Sbjct: 197 KL-QGESQERRR---GRPPKVLVLCPTRELANQVAKDFKDI---TRKLTVGCFYGGTPYN 249
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL-- 286
Q ++ GID+++GTPGRIKDH++ G +DL+ +K VLDE D+ML MGF E VE IL
Sbjct: 250 GQIDLMRSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRV 309
Query: 287 -GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++K+ + IDL+G + KA+T V H+ + C
Sbjct: 310 AYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKTRYEQIDLIGKKTQKAATTVEHLAIECH 369
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R+ VI D+I+ YS S GRTI+F ETK+ A++LA + ++LHGDI Q QRE+T
Sbjct: 370 WSQRAAVIGDVIQVYSGSQGRTIVFCETKKEANELALNASIKQDCQSLHGDIPQKQREIT 429
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG
Sbjct: 430 LKGFRNGSFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICIC 489
Query: 455 -------------------------------------VEAAETITQVSDSVIPAFKSAAE 477
+A + V + I F+ +A+
Sbjct: 490 FYQRKEEYQLRHVEQKAGITFKRVGVPTATDIIKASSKDAMRCLDSVPQTAIEYFRESAQ 549
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
L+ G A LA ALA G T I+ RSLL+S VT++L + + S+A+ L
Sbjct: 550 LLIKEKGPVNA--LAAALAHISGATSIEQRSLLNSDVGFVTMILRCSEEMSNMSYAWRRL 607
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 596
R L ++ V M G FDVPVAD + +++ + L V +LP L E
Sbjct: 608 REVLGDDIDRKVNRMCFLKGKMGVCFDVPVADQKEIEARWEDSKHWRLCVATELPELVE 666
>gi|432852515|ref|XP_004067286.1| PREDICTED: nucleolar RNA helicase 2-like [Oryzias latipes]
Length = 775
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 251/635 (39%), Positives = 344/635 (54%), Gaps = 93/635 (14%)
Query: 47 KESSKKRKESEIEEEEERS---ETSSELGEPVNLKSEKEKK-------KKKKAKVEPEAG 96
K+ +KK K I+ EE++ E ++ + + V +K KK KK+K K E
Sbjct: 90 KQKTKKSKNGNIDTVEEQNGHMEEANGISDDVQTPKQKTKKSKNGNIDKKQKQKANEETA 149
Query: 97 VEEQ----------------ERGESEHPN----AVSRFRISVPLREKLKSKGIESLFPIQ 136
++E E+ E P A S FRIS KLK++G+ LF IQ
Sbjct: 150 IKEHSTPNTPSPSSDDSCDSEKETEETPEQKEGAFSNFRISQVTINKLKARGVSYLFDIQ 209
Query: 137 AMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196
TF+ V DG D++ +ARTG GKT +F +P++E L K +T GR P VLVL PT
Sbjct: 210 VKTFNPVYDGEDVLAQARTGTGKTFSFAIPLVERLQ----KEGGETTRGRPPKVLVLTPT 265
Query: 197 RELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG 255
RELA QV +DF DV + L C YGG+ Y+ Q ++ GID+++GTPGRIKDH++
Sbjct: 266 RELAIQVAKDFKDV---SKKLAIACFYGGSSYNPQLDAIRNGIDILVGTPGRIKDHLQNH 322
Query: 256 NIDLSSLKFRVLDEADEMLRMGFVEDVELILG----KVEDANKVQTLLFSATLPSWVKHI 311
++LS LK VLDE D+ML MGF E VE IL K D N QTLLFSAT P WV +
Sbjct: 323 KLNLSDLKHVVLDEVDQMLDMGFAEQVEEILSLSYKKDSDTNP-QTLLFSATCPPWVYEV 381
Query: 312 STKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFT 370
+ K+++ K +DL+G + +A+T V H+ + C S R+ VI D+I+ YS S GRTIIF
Sbjct: 382 AKKYMRPGCKHVDLIGKKTQRAATTVEHLAIACHWSQRAAVIGDVIQVYSGSHGRTIIFC 441
Query: 371 ETKESASQL---ADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427
ETK+ A++L A + ++ LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +
Sbjct: 442 ETKKEANELSMNASIKQSSQTLHGDIPQKQREITLKGFRNGAFEVLVATNVAARGLDIPE 501
Query: 428 VQLIIQCEPPRDVEAYIHRSGRTGRA--------------------------------GV 455
V L++Q PP+DVE+YIHRSGRTGRA GV
Sbjct: 502 VDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEEQLRYVENKAGITFRRVGV 561
Query: 456 EAAETITQVS--------DSV----IPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTE 503
A I + S DSV I FK +AE+L+ G A E LA ALA G T
Sbjct: 562 PTANDIIKASSKDAVRFLDSVPVTAIEYFKESAEKLIEERG--AVEALAAALAHISGATS 619
Query: 504 IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVF 563
++ RSLL+S + T+ + + ++ +A+ ++ L +E + M NG F
Sbjct: 620 LEQRSLLNSDAGYTTIQMTCSQEMHNLGYAWRTIKEQLGDEFENHIHRMTFLKGKNGVCF 679
Query: 564 DVPVADLDLFRSGADNAANVSLEVLKQLPPLQERE 598
DVP + S + L V +LP L+E++
Sbjct: 680 DVPSDKVKEMMSNWQDGRRWQLTVATELPELEEKQ 714
>gi|344275097|ref|XP_003409350.1| PREDICTED: nucleolar RNA helicase 2 [Loxodonta africana]
Length = 787
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 247/580 (42%), Positives = 323/580 (55%), Gaps = 72/580 (12%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
EQE + A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG G
Sbjct: 178 EQEIPVEQKEGAFSNFPISEATVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTG 237
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLT 217
KT +F +P++E L +G + K+ GR P VLVL PTRELA QV DF D+ L
Sbjct: 238 KTFSFAIPLIEKL-HGELQDKKR---GRPPQVLVLAPTRELASQVSRDFSDI---TKKLA 290
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
C YGG PY Q +++ GID+++GTPGRIKDH++ +DL+ LK VLDE D+ML MG
Sbjct: 291 VACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHLQNAKLDLTKLKHVVLDEVDQMLDMG 350
Query: 278 FVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS 334
F + VE IL K + + QTLLFSAT P WV +++ K++KS + +DL+G + K +
Sbjct: 351 FADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 410
Query: 335 TNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESA---SQLADLLPGARALH 390
V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A SQ A + A++LH
Sbjct: 411 ITVEHLAIKCHWTHRATVIGDVIRVYSGYHGRTIIFCETKKEAQELSQNASIKQDAQSLH 470
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRT
Sbjct: 471 GDIPQKQREITLKGFRNGAFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRT 530
Query: 451 GRAG--------------------------------VEAAETITQVS--------DSVIP 470
GRAG V +A I + S DSV P
Sbjct: 531 GRAGRTGVCICFYQYKEEYQLAQVEQKAGIKFKRIGVPSATEIVKASSKDAIRYLDSVPP 590
Query: 471 A----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKP 526
FK +AE+L+ G A E LA ALA G T + RSL+S VT++L+
Sbjct: 591 TAISYFKQSAEKLIEEKG--AVEALAAALAHISGATAVDQRSLISLDVGLVTMILKCSIE 648
Query: 527 IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLE 586
+ S+A+ L+ L E+ VKGM G FDVP A + + ++ L
Sbjct: 649 MSNISYAWKELKEQLGEDIDSKVKGMVFLKGKLGVCFDVPTAAVTEIQEKWHDSRRWQLS 708
Query: 587 VLKQLPPLQ-EREQSRGRFGGGGRGGFGGRGGNRFSGGRG 625
V + P L+ RE G RG G R GNR G RG
Sbjct: 709 VATEQPELEGPRE--------GYRGSRGPREGNR--GFRG 738
>gi|298712936|emb|CBJ26838.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 694
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 229/558 (41%), Positives = 316/558 (56%), Gaps = 69/558 (12%)
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
+HP +V F IS + L+++GI +LFPIQA TF+ + G DL+GRARTG GKTLAF +
Sbjct: 145 QHP-SVDEFDISETTKGHLRNRGITTLFPIQAQTFEHIRRGKDLIGRARTGMGKTLAFAV 203
Query: 166 PILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225
P++E L + K GR P VLV+ PTRELAKQV DF++ A L + C+YGGA
Sbjct: 204 PVIEKLLMAGAGSLKP---GRKPRVLVMAPTRELAKQVAADFELT--APSLKTTCIYGGA 258
Query: 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285
PY QE L+ G+DVV+GTPGR+ DH+ RG + LS +F +LDEAD+ML MGF E++E +
Sbjct: 259 PYRPQEDALRWGVDVVVGTPGRLLDHVGRGTLQLSDAEFIILDEADQMLDMGFKEEMEKV 318
Query: 286 LGKV--EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
E Q LLFSAT+P WV + +++K D+ IDLV +KAS +V HI +P
Sbjct: 319 FEACGEEGEQGRQMLLFSATMPPWVDKVVKEYMKEDRVFIDLVKEGTVKASKDVEHIGIP 378
Query: 344 CSSSARSQVIPDIIRCYSSGG--RTIIFTETKESASQLA---DLLPGARALHGDIQQSQR 398
C ++RS I DI+ Y +GG RTI+F TK ++L + +ALHGDI Q+ R
Sbjct: 379 CHWTSRSSTINDIVSVYGAGGNKRTIVFCTTKRDCNELCMDPKMTYDCQALHGDITQANR 438
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGR 452
E TLAGF+ G F LVAT+VAARGLD+ V L++ EPP D E+Y+HRSGRTGR
Sbjct: 439 ESTLAGFKKGSFKVLVATDVAARGLDMI-VDLVLNAEPPTHQSGRVDTESYVHRSGRTGR 497
Query: 453 AGVE--------------------------------------------AAETITQVSDSV 468
AG + A + I V DSV
Sbjct: 498 AGRKGMCITLYTPRQRGGLGEIERHIGNDFAWRGAPQPDDIVNASAGAAIDDIRAVDDSV 557
Query: 469 IPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEAGKPI 527
I +K+AAE+L++ G A ALA G TE + RSLLS+ E HVT++ + PI
Sbjct: 558 IDLYKTAAEQLIDEKGALNAL--CAALACMTGRTEAMPVRSLLSNSEGHVTIIFRSDHPI 615
Query: 528 YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEV 587
++ + +R+ L + ++GM L+ DG VFDVP ++ R + L++
Sbjct: 616 EYMAYCWTAIRKVLSSAAADNIRGMQLSEDGLACVFDVPEEHMEGVRDVCERED--WLDI 673
Query: 588 LKQLPPLQEREQSRGRFG 605
+LPPL+ + +G G
Sbjct: 674 CTELPPLKGAREGKGVNG 691
>gi|348509639|ref|XP_003442355.1| PREDICTED: nucleolar RNA helicase 2-like [Oreochromis niloticus]
Length = 755
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 232/556 (41%), Positives = 315/556 (56%), Gaps = 66/556 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S FRIS +KLK++G+ LF IQ TF+ V DG D++ +ARTG GKT +F +P++E
Sbjct: 159 AFSNFRISKVTIDKLKARGVSYLFDIQVKTFNHVYDGEDVIAQARTGTGKTFSFAIPLVE 218
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
L K S + GR P VLVL PTRELA QV +DF V + C YGG+ Y+
Sbjct: 219 KLQ----KDSVEMARGRPPKVLVLTPTRELAIQVAKDFKDIAKRVSIA--CFYGGSSYNP 272
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG-- 287
Q ++ GID+++GTPGRIKDHI+ ++L+ +K VLDE D+ML MGF E VE ILG
Sbjct: 273 QIDAIRNGIDILVGTPGRIKDHIQNNKLNLTKVKHVVLDEVDQMLDMGFAEQVEEILGSS 332
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K D N QTLLFSAT P WV ++ K+++ + K IDL+G + KA+T V H+ + C
Sbjct: 333 YKKDSDTNP-QTLLFSATCPPWVYEVAKKYMRPNCKHIDLIGKKTQKAATTVEHLAITCH 391
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQL---ADLLPGARALHGDIQQSQREVT 401
S R+ VI D+I+ YS S GRTI+F ETK+ A++L A + ++LHGDI Q QRE+T
Sbjct: 392 WSQRAAVIGDVIQVYSGSHGRTIVFCETKKEANELSMNASIKQSTQSLHGDIPQKQREMT 451
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA-------- 453
L GFR+G F LVATNVAARGLDI +V L++QC PP+DVE+YIHRSGRTGRA
Sbjct: 452 LKGFRNGAFEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCIC 511
Query: 454 ------------------------GVEAAETITQVS--------DSV----IPAFKSAAE 477
GV A I + S DSV I F+++AE
Sbjct: 512 FYQRKEEDQLRYVENKAGITFRRVGVPTANDIIKSSSKDAVRFLDSVPVAAIGYFRASAE 571
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
+L+ G A + LA ALA G T ++ RSLL+S T+ L + ++ +A+ +
Sbjct: 572 KLIEERG--AVDALAAALAHISGATSLEQRSLLNSDAGFSTMQLVCSQEMHNLGYAWRTI 629
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQER 597
+ L E+ + M G FDVP + + + L V +LP L+E+
Sbjct: 630 KEQLGEQIENHIHRMTFLKGRTGVCFDVPADKVKEIQETWQDGRRWQLTVATELPELEEK 689
Query: 598 EQSRGRFGGGGRGGFG 613
+ F G GFG
Sbjct: 690 Q-----FSNRGDRGFG 700
>gi|351702495|gb|EHB05414.1| Nucleolar RNA helicase 2 [Heterocephalus glaber]
Length = 777
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 237/559 (42%), Positives = 316/559 (56%), Gaps = 68/559 (12%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK++G+ LFPIQA TF V G D
Sbjct: 167 SEIEQEIPVEQKE-------GAFSNFPISEETVKLLKARGVTFLFPIQAKTFHHVYSGKD 219
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA QV DF
Sbjct: 220 LIAQARTGTGKTFSFAIPLIEKL-QGQLQDRKR---GRAPQVLVLAPTRELANQVSRDFS 275
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L C YGG PY Q +++ GID+++GTPGRIKDH++ G +DLS LK VL
Sbjct: 276 DI---TKKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLSKLKHVVL 332
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML MGF E VE IL K + + QTLLFSAT PSWV +++ K++KS + +D
Sbjct: 333 DEVDQMLDMGFAEQVEDILCVAYKKDSEDNPQTLLFSATCPSWVFNVAKKYMKSIYEQVD 392
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESA---SQLA 380
L+G + K + V H+ + C + R+ VI D+IR YS GRTI+F ETK+ A SQ A
Sbjct: 393 LIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIVFCETKKEAQELSQNA 452
Query: 381 DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A++LHGDI Q QRE+TL GFR+G F +VATNVAARGLDI +V L++Q PP+DV
Sbjct: 453 SIKQDAQSLHGDIPQKQREITLKGFRNGDFGVMVATNVAARGLDIPEVDLVVQSCPPKDV 512
Query: 441 EAYIHRSGRTGRA--------------------------------GVEAAETITQVS--- 465
E+YIHRSGRTGRA GV + I + S
Sbjct: 513 ESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSPTEIIKASSKD 572
Query: 466 -----DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S
Sbjct: 573 AIRLLDSVPPTAIGHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSEAGF 630
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT++L + S+A+ L+ L E+ VKGM G FDV A + +
Sbjct: 631 VTMILRCSVEMPNISYAWKELKEQLGEDIDSKVKGMVFLKGKLGVCFDVRTAAVTEIQEK 690
Query: 577 ADNAANVSLEVLKQLPPLQ 595
++ L V + P L+
Sbjct: 691 WHDSRRWQLAVATEQPELE 709
>gi|348685693|gb|EGZ25508.1| hypothetical protein PHYSODRAFT_326516 [Phytophthora sojae]
Length = 962
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 228/591 (38%), Positives = 332/591 (56%), Gaps = 80/591 (13%)
Query: 67 TSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKS 126
T+ E+ E +SE E KKAK E V G +E+P + F I + LK+
Sbjct: 68 TTPEISE----ESEVETPAAKKAKNENATHV-----GGTENP-PLESFDICAETVKNLKA 117
Query: 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186
+GI +LFPIQAMTFD +L G DL+GRARTG GKTLAF LP++E L K + GR
Sbjct: 118 RGIHTLFPIQAMTFDKILAGKDLMGRARTGMGKTLAFALPVIELLL----KDKRPRSRGR 173
Query: 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
AP V+ + PTRELAKQV +F+ G + L++ C+YGGA Y +Q + G+D+++GT G
Sbjct: 174 APRVVCMAPTRELAKQVATEFEQSGPS--LSTVCIYGGASYQSQNNAFRSGVDILVGTTG 231
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG-----KVEDANKVQTLLFS 301
R+ DHI+RGN+ L + +F +LDEAD ML MGF EDV+ + K E + K QTLLFS
Sbjct: 232 RVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFAAMEQTKNESSGKRQTLLFS 291
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P WV ++ K++ D++ ++LV + +AST+V+HI +PC R ++ +++ Y+
Sbjct: 292 ATIPKWVTDVADKYMAKDREYVNLVKDSDDQASTDVQHIAIPCHWQGRPTLLANLLGVYA 351
Query: 362 -SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
RTIIF ETK+ ++LA ++ + LHGDI Q QRE T+ FR G+ L+AT+
Sbjct: 352 KKDSRTIIFAETKKDCNELAVHPEIKTDCQVLHGDIAQEQRETTMKAFREGRLRLLIATD 411
Query: 418 VAARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGRAG----------------- 454
VAARGLD+N V L+I EPPR DV+ Y+HRSGRTGRAG
Sbjct: 412 VAARGLDMN-VDLVINSEPPRKMSGMADVDTYVHRSGRTGRAGKKGICITLYTNRQRDQL 470
Query: 455 ------------------------VEAAETITQVSD---SVIPAFKSAAEELLNNSGLSA 487
AA+ +T++++ S+I F+ A ELL +
Sbjct: 471 TQIERKIGNKFIMKGPPDQEDLIKASAAKALTEINNVDPSMIEIFQEKAAELLGQ--MDP 528
Query: 488 AELLAKALAKAVGYTEIKSR-SLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKV 546
+ LA ALA G+T+ R SL+S + D+VTV+ + I + + + R +PE
Sbjct: 529 EKCLAAALACITGHTKPPRRTSLMSGVPDYVTVLFTSSNFIRAKGYVWNAVNRDIPENFA 588
Query: 547 ELVKGMALTADGNGAVFDVPVADLDLFRSGADNAA-NVSLEVLKQLPPLQE 596
+K + LT D GA FD+P+ L++ + + + K +P LQ+
Sbjct: 589 NDIKQLTLTEDSMGACFDLPIGALEIVEKLIEEGGMHCPYSIPKTIPKLQQ 639
>gi|329663131|ref|NP_001192982.1| ATP-dependent RNA helicase DDX50 [Bos taurus]
gi|296472173|tpg|DAA14288.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
gi|440895816|gb|ELR47910.1| ATP-dependent RNA helicase DDX50 [Bos grunniens mutus]
Length = 737
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 245/623 (39%), Positives = 340/623 (54%), Gaps = 81/623 (13%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L+++ S K ++K+ S +I+E E+RS+ S L + S+
Sbjct: 73 DTEEGCDRLSDEFSKSHKPRRKDLSN----GDIDEHEKRSKRVSSLNSSTHKSSDN---- 124
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
KVE E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 125 ----KVE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 173
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 174 GKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 229
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF DV L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 230 DFKDV---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 286
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE IL K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 287 VVLDEVDQMLDLGFAEQVEDILHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 406
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 407 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 466
Query: 438 RDVEAYIHRSGRTGRAG------------------------------------------- 454
+DVE+YIHRSGRTGRAG
Sbjct: 467 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526
Query: 455 -VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSL 513
++A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S
Sbjct: 527 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSD 584
Query: 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLF 573
+ VT+ LE+ + I S A+ L R L V + M L G FDVP + +
Sbjct: 585 KGFVTMTLESPEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERL 644
Query: 574 RSGADNAANVSLEVLKQLPPLQE 596
++ ++ + L V +LP ++E
Sbjct: 645 QAEWHDSDWI-LSVPAKLPEIEE 666
>gi|198419625|ref|XP_002130533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
[Ciona intestinalis]
Length = 672
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 217/543 (39%), Positives = 307/543 (56%), Gaps = 62/543 (11%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
+ FRI+ + LK KG+ LFPIQ +F+ V DG D+V +ARTG GKTL+F +P++E L
Sbjct: 93 NNFRITEQTKVLLKKKGVAYLFPIQIQSFNHVYDGKDVVAQARTGTGKTLSFAIPLVEKL 152
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQ 230
K YGR P VLV+ PTRELA QV +DF D+ + GL+S C+YGG PY Q
Sbjct: 153 IMNRCK-----DYGRPPKVLVMAPTRELAIQVRKDFQDI---SQGLSSVCIYGGTPYFQQ 204
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV- 289
E ++ G+D+V+GTPGRI DH+++GN+ L S++ VLDE D+ML MGF VE ILG
Sbjct: 205 ERSMRGGVDIVVGTPGRIMDHVQKGNLQLGSVEHVVLDEVDQMLDMGFAPKVEEILGYAY 264
Query: 290 --EDANKVQTLLFSATLPSWVKHISTKFLK-SDKKTIDLVGNEKMKASTNVRHIVLPCSS 346
E QTLLFSAT P WV++ S K+++ S+ +D +G ++ +T V H+ + C
Sbjct: 265 TEEREGPPQTLLFSATCPPWVRNTSRKYMRPSETVHVDTIGKSLVRTATTVEHLAIRCQY 324
Query: 347 SARSQVIPDIIRCYS-SGGRTIIFTETKESASQL----ADLLPGARALHGDIQQSQREVT 401
S R++ I ++++ YS GR +IFT+TK+ A++L A A+ LHGDI+Q QRE+T
Sbjct: 325 SDRAECIGNVVQMYSGQHGRAMIFTDTKKDANELVVCEALQQQKAQVLHGDIEQRQREIT 384
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L +R G LVATNVAARGLDI ++ L+IQ PP D+++YIHRSGRTGRAG
Sbjct: 385 LKAYRDGTVRCLVATNVAARGLDIPEIDLVIQTSPPSDIDSYIHRSGRTGRAGRTGVCVC 444
Query: 455 -------------------------------------VEAAETITQVSDSVIPAFKSAAE 477
+A ++ V + F AE
Sbjct: 445 FYKPREDMMIKKVERVAGIKFKMVGPPQPKDIVKASVNDAIASLDLVDKKITAEFMKHAE 504
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
++ +N A E LA ALA G +++KSRSLL++ D T L+ I F F +
Sbjct: 505 QVASNHAGGAMEALASALAYMAGASDLKSRSLLNAQADFTTWHLQTQYEIRFAGFVFSTM 564
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQER 597
+ L + + + GM LTAD GAVFD+P + +++ ++L+ LP L ER
Sbjct: 565 EQILGKHIRDKIVGMRLTADKLGAVFDLPNECTEEIDQSWEDSPTLTLKPCDDLPELTER 624
Query: 598 EQS 600
S
Sbjct: 625 LDS 627
>gi|410925948|ref|XP_003976441.1| PREDICTED: nucleolar RNA helicase 2-like [Takifugu rubripes]
Length = 713
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 231/545 (42%), Positives = 307/545 (56%), Gaps = 69/545 (12%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S FRIS KLK++G+ LF IQ TFD V DG D++ +ARTG GKT +F +P++E
Sbjct: 131 AFSNFRISPVTINKLKARGVSYLFDIQVKTFDSVYDGEDVIAQARTGTGKTFSFAIPLVE 190
Query: 170 SL---TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGA 225
L + GP + GRAP VLVL PTRELA QV +DF D+ L+ C YGG
Sbjct: 191 KLQRDSAGPAR-------GRAPKVLVLTPTRELAIQVAKDFKDIIKK---LSIVCFYGGT 240
Query: 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285
Y Q ++ GID+++GTPGRIKDH++ +DLS LK VLDE D+ML MGF E VE I
Sbjct: 241 SYMPQIDAIRNGIDILVGTPGRIKDHLQNNKLDLSKLKHVVLDEVDQMLDMGFAEQVEEI 300
Query: 286 LG----KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341
L K D N QTLLFSAT P WV ++ K+++ K +DL+G + KA+T V H+
Sbjct: 301 LASSYKKDADTNP-QTLLFSATCPPWVYDVAKKYMRPKCKHVDLIGKKTQKAATTVEHLA 359
Query: 342 LPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQL---ADLLPGARALHGDIQQSQ 397
+ C S R+ VI D+I+ YS S GRTI+F ETK+ A++L A + ++LHGDI Q Q
Sbjct: 360 IACHWSQRAAVIGDVIQVYSGSHGRTIVFCETKKEANELSMNASIKQSTQSLHGDIPQKQ 419
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA---- 453
RE TL GFR+G F LVATNVAARGLDI +V L++QC PP+DVE+YIHRSGRTGRA
Sbjct: 420 RETTLKGFRNGSFEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTG 479
Query: 454 ----------------------------GVEAAETITQVS--------DSV----IPAFK 473
GV A I + S DS+ I F+
Sbjct: 480 VCICFYQRKEEDQLRYVENKAGITFRRVGVPTANDIIKSSSKDAVRFLDSIPVAAIGYFR 539
Query: 474 SAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFA 533
++AE+L+ G A + LA ALA G T ++ RSLL+S + T+ L ++ +A
Sbjct: 540 ASAEKLIEERG--AVDALAAALAHISGATALEQRSLLNSDAGYTTLQLTCSLEMHNIGYA 597
Query: 534 FGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPP 593
+ L+ L EE + M G FDVP + + + L V +LP
Sbjct: 598 WKSLKEQLGEEIETHIHRMTFLKGRMGVCFDVPADKVKEIQENWKDGRRWQLTVATELPE 657
Query: 594 LQERE 598
L+ +E
Sbjct: 658 LEVKE 662
>gi|426255664|ref|XP_004021468.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Ovis aries]
Length = 738
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 243/623 (39%), Positives = 340/623 (54%), Gaps = 81/623 (13%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L+++ S K ++K+ S +I+E E+RS+ S L + S+
Sbjct: 74 DTEEGCDRLSDEFSKSHKPRRKDLSN----GDIDEHEKRSKRVSSLNSSTHKSSDN---- 125
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 126 ----KLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 174
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 175 GKDLIAQARTGTGKTFSFAIPLIEKLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 230
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 231 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 287
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE IL K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 288 VVLDEVDQMLDLGFAEQVEDILHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 347
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 348 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 407
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 408 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 467
Query: 438 RDVEAYIHRSGRTGRAG------------------------------------------- 454
+DVE+YIHRSGRTGRAG
Sbjct: 468 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 527
Query: 455 -VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSL 513
++A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S
Sbjct: 528 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSD 585
Query: 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLF 573
+ VT+ LE+ + I S A+ L R L V + M L G FDVP + +
Sbjct: 586 KGFVTMTLESPEEIQDVSSAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERL 645
Query: 574 RSGADNAANVSLEVLKQLPPLQE 596
++ ++ + L V +LP ++E
Sbjct: 646 QAEWRDSDWI-LSVPAKLPEIEE 667
>gi|348575872|ref|XP_003473712.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Cavia porcellus]
Length = 735
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 242/623 (38%), Positives = 341/623 (54%), Gaps = 82/623 (13%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE + L+++ S KS++K+ S +I+E E++S+ S L + K
Sbjct: 73 DTEEGFSRLSDEFSTSHKSRRKDLSN----GDIDECEKKSKRVSSL---------ENSHK 119
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 120 SSDNKLE-ETLTREQKEG------AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYE 172
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 173 GKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 228
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 229 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 285
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 286 VVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 345
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 346 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 405
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 406 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 465
Query: 438 RDVEAYIHRSGRTGRAG------------------------------------------- 454
+DVE+YIHRSGRTGRAG
Sbjct: 466 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 525
Query: 455 -VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSL 513
++A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S
Sbjct: 526 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSD 583
Query: 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLF 573
+ VT+ LE+ + I S A+ L R L V + M L G FDVP + +
Sbjct: 584 KGFVTMTLESSEEIQDVSCAWKELNRKLSSNTVSQITRMCLLKGNMGVCFDVPTTESEKL 643
Query: 574 RSGADNAANVSLEVLKQLPPLQE 596
++ ++ + L V +LP ++E
Sbjct: 644 QAEWHDSDWI-LSVPAKLPEIEE 665
>gi|344237687|gb|EGV93790.1| ATP-dependent RNA helicase DDX50 [Cricetulus griseus]
Length = 670
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 248/647 (38%), Positives = 348/647 (53%), Gaps = 83/647 (12%)
Query: 17 KMNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVN 76
KM +K+ D EE + L+++ S KS++K+ +++ E RS+ S L
Sbjct: 55 KMREKLN-GDTEEGLSRLSDEFSPSHKSRRKDVPN----GDVDTYERRSKRVSSL----- 104
Query: 77 LKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQ 136
+ K KVE E EQ+ G A S F IS + LK +G+ LFPIQ
Sbjct: 105 ----ENSTYKSSDKVE-ETLTREQKEG------AFSNFSISEETIKLLKGRGVTYLFPIQ 153
Query: 137 AMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196
TF V +G DL+ +ARTG GKT +F +P++E L K R+P VLVL PT
Sbjct: 154 VKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETVKK----SRSPKVLVLAPT 209
Query: 197 RELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG 255
RELA QV +DF D+ L+ C YGG Y +Q +++ GID+++GTPGRIKDH++ G
Sbjct: 210 RELANQVAKDFKDI---TRKLSVACFYGGTSYQSQINQIRNGIDILVGTPGRIKDHLQSG 266
Query: 256 NIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHIS 312
+DLS L+ VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++
Sbjct: 267 RLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVA 326
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTE 371
K++KS + +DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF E
Sbjct: 327 KKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCE 386
Query: 372 TKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
TK++ +++A + A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V
Sbjct: 387 TKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEV 446
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAG---------------------------------- 454
L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 447 DLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVP 506
Query: 455 ----------VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEI 504
++A ++ VS + + F+ +A+ L+ G A + LA ALA G +
Sbjct: 507 STMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSF 564
Query: 505 KSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFD 564
+ RSL++S + VT+ LE+ + I S A+ L R L V V M L G FD
Sbjct: 565 EPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSSNAVSQVTRMCLLKGNMGVCFD 624
Query: 565 VPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRGG 611
VP ++ + ++ ++ + L V +LP ++E RGG
Sbjct: 625 VPTSESERLQAEWHDSDWI-LSVPAKLPEIEEYYDGNTSSNPRQRGG 670
>gi|395501396|ref|XP_003755081.1| PREDICTED: nucleolar RNA helicase 2 [Sarcophilus harrisii]
Length = 798
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 255/640 (39%), Positives = 352/640 (55%), Gaps = 94/640 (14%)
Query: 48 ESSKKRKESEIEE----EEERSETSSELGEPVN-------LKSEKEKKKKKKAKVEPEAG 96
E K+ KE E EE + ++S+ +EL E + + +K+ K KV G
Sbjct: 59 EEPKRMKEEEEEEEACPKAKKSKDKAELSEKPKKAKKEKLVNGDTGEKQPKPQKVSLSNG 118
Query: 97 VE---------------------EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPI 135
+ EQE + A S F IS + LK++G+ LFPI
Sbjct: 119 LPPQKYSPESDSEESSSDSDSEAEQELSAEQKEGAFSNFPISEETIQLLKARGVTYLFPI 178
Query: 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195
QA TF V G DL+ +ARTG GKT +F +P++E L G T+ + GRAP +LVL P
Sbjct: 179 QAKTFHHVSSGKDLIAQARTGTGKTFSFAIPLIEKL-QGDTQPRAR---GRAPKILVLAP 234
Query: 196 TRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
TREL+ QV +DF D+ LT C YGG PY+ Q +++GID+++GTPGRIKDH++
Sbjct: 235 TRELSIQVSKDFSDI---TRKLTVACFYGGTPYNGQIDLIRRGIDILVGTPGRIKDHLQN 291
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHI 311
G +DLS ++ VLDE D+ML MGF E VE IL K + + QTLLFSAT P WV +
Sbjct: 292 GRLDLSKVQHVVLDEVDQMLDMGFAEQVEEILTVAYKKDSEDNPQTLLFSATCPHWVYDV 351
Query: 312 STKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFT 370
+ K++KS + +DL+G + KA+ V H+ + C S R+ VI D+I+ YS S GRTIIF
Sbjct: 352 AKKYMKSTYEQVDLIGKKTQKAAVTVEHLAINCHWSQRAAVIGDVIQVYSGSHGRTIIFC 411
Query: 371 ETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427
ETK+ A +L+ + A++LHGDI Q QRE+TL GFR+GKF LVATNVAARGLDI +
Sbjct: 412 ETKKEAQELSLNESIKQDAQSLHGDIPQKQREITLQGFRNGKFGVLVATNVAARGLDIPE 471
Query: 428 VQLIIQCEPPRDVEAYIHRSGRTGRA--------------------------------GV 455
V L+IQ PP+DVE+YIHRSGRTGRA GV
Sbjct: 472 VDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQKKEQHQLAQVERQAGITFKRVGV 531
Query: 456 EAAETITQVS--------DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTE 503
+A I + S DSV PA F+ A++L++ G A E LA ALA G T
Sbjct: 532 PSASEIIKASSKDAIRFLDSVPPAAINNFRQTAQKLIDEKG--AVEALAAALAHISGATT 589
Query: 504 IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVF 563
++ RSL++S VT+VL+ ++ +A+ L+ L EE + V M G F
Sbjct: 590 VEQRSLINSDVGFVTMVLQCSIEMHNIGYAWRGLKEQLGEEIDDKVTRMTFLKGKMGVCF 649
Query: 564 DVPVADLDLFRSGADNAANVSLEVLKQLPPL-QEREQSRG 602
DVP A++ F+ ++ L V + P L Q+ ++ RG
Sbjct: 650 DVPAAEVKTFQDQWQDSRRWQLSVATERPELEQQPDEGRG 689
>gi|410349717|gb|JAA41462.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
Length = 737
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 249/676 (36%), Positives = 347/676 (51%), Gaps = 107/676 (15%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGITDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAG--------------------------------------------VEAAET 460
HRSGRTGRAG ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 461 ITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVV 520
+ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S + VT+
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMT 591
Query: 521 LEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNA 580
LE+ + I S A+ L R L V + M L G FDVP + + ++ ++
Sbjct: 592 LESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEWHDS 651
Query: 581 ANVSLEVLKQLPPLQE 596
+ L V +LP ++E
Sbjct: 652 DWI-LSVPAKLPEIEE 666
>gi|384475931|ref|NP_001245111.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|296220521|ref|XP_002756344.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Callithrix
jacchus]
gi|380816428|gb|AFE80088.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|383421495|gb|AFH33961.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|384949360|gb|AFI38285.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
Length = 737
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 249/676 (36%), Positives = 347/676 (51%), Gaps = 107/676 (15%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKTKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDSSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAG--------------------------------------------VEAAET 460
HRSGRTGRAG ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 461 ITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVV 520
+ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S + VT+
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMT 591
Query: 521 LEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNA 580
LE+ + I S A+ L R L V + M L G FDVP + + ++ ++
Sbjct: 592 LESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEWHDS 651
Query: 581 ANVSLEVLKQLPPLQE 596
+ L V +LP ++E
Sbjct: 652 DWI-LSVPAKLPEIEE 666
>gi|114630813|ref|XP_507824.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
troglodytes]
gi|397489926|ref|XP_003815962.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
paniscus]
gi|410227544|gb|JAA10991.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
gi|410259742|gb|JAA17837.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
gi|410288618|gb|JAA22909.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
Length = 737
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 249/676 (36%), Positives = 347/676 (51%), Gaps = 107/676 (15%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGITDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAG--------------------------------------------VEAAET 460
HRSGRTGRAG ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 461 ITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVV 520
+ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S + VT+
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMT 591
Query: 521 LEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNA 580
LE+ + I S A+ L R L V + M L G FDVP + + ++ ++
Sbjct: 592 LESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEWHDS 651
Query: 581 ANVSLEVLKQLPPLQE 596
+ L V +LP ++E
Sbjct: 652 DWI-LSVPAKLPEIEE 666
>gi|332218196|ref|XP_003258245.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Nomascus
leucogenys]
Length = 737
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 249/676 (36%), Positives = 347/676 (51%), Gaps = 107/676 (15%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKTKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAG--------------------------------------------VEAAET 460
HRSGRTGRAG ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 461 ITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVV 520
+ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S + VT+
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMT 591
Query: 521 LEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNA 580
LE+ + I S A+ L R L V + M L G FDVP + + ++ ++
Sbjct: 592 LESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEWHDS 651
Query: 581 ANVSLEVLKQLPPLQE 596
+ L V +LP ++E
Sbjct: 652 DWI-LSVPAKLPEIEE 666
>gi|13129006|ref|NP_076950.1| ATP-dependent RNA helicase DDX50 [Homo sapiens]
gi|297686803|ref|XP_002820928.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pongo
abelii]
gi|55976580|sp|Q9BQ39.1|DDX50_HUMAN RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
box protein 50; AltName: Full=Gu-beta; AltName:
Full=Nucleolar protein Gu2
gi|13540304|gb|AAK29402.1|AF334103_1 nucleolar protein GU2 [Homo sapiens]
gi|12653021|gb|AAH00272.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
gi|119574689|gb|EAW54304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
gi|123983644|gb|ABM83473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
gi|123998165|gb|ABM86684.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
Length = 737
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 249/676 (36%), Positives = 347/676 (51%), Gaps = 107/676 (15%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAG--------------------------------------------VEAAET 460
HRSGRTGRAG ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 461 ITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVV 520
+ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S + VT+
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMT 591
Query: 521 LEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNA 580
LE+ + I S A+ L R L V + M L G FDVP + + ++ ++
Sbjct: 592 LESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEWHDS 651
Query: 581 ANVSLEVLKQLPPLQE 596
+ L V +LP ++E
Sbjct: 652 DWI-LSVPAKLPEIEE 666
>gi|281346962|gb|EFB22546.1| hypothetical protein PANDA_001615 [Ailuropoda melanoleuca]
Length = 710
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 240/621 (38%), Positives = 340/621 (54%), Gaps = 81/621 (13%)
Query: 28 EETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKK 87
EE L+++ S KS++K+ S +I+E E++S+ S L + S+
Sbjct: 48 EECNNRLSDEFSKSHKSRRKDLSN----GDIDEYEKKSKRVSSLDSSTHKSSDN------ 97
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS 147
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +G
Sbjct: 98 --KLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGK 148
Query: 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207
DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF
Sbjct: 149 DLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDF 204
Query: 208 -DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ V
Sbjct: 205 KDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVV 261
Query: 267 LDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
LDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +
Sbjct: 262 LDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPPWVYKVAKKYMKSRYEQV 321
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA-- 380
DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 322 DLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMN 381
Query: 381 -DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+D
Sbjct: 382 PHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQD 441
Query: 440 VEAYIHRSGRTGRAG--------------------------------------------V 455
VE+YIHRSGRTGRAG +
Sbjct: 442 VESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSM 501
Query: 456 EAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLED 515
+A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S +
Sbjct: 502 DAIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKG 559
Query: 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRS 575
VT+ LE+ + I S A+ L R L V + M L G FDVP + + ++
Sbjct: 560 FVTMTLESPEEIQDISCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQA 619
Query: 576 GADNAANVSLEVLKQLPPLQE 596
++ + L + +LP ++E
Sbjct: 620 EWHDSDWI-LSLPAKLPEIEE 639
>gi|301755882|ref|XP_002913779.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ailuropoda
melanoleuca]
Length = 739
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 240/621 (38%), Positives = 340/621 (54%), Gaps = 81/621 (13%)
Query: 28 EETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKK 87
EE L+++ S KS++K+ S +I+E E++S+ S L + S+
Sbjct: 77 EECNNRLSDEFSKSHKSRRKDLSN----GDIDEYEKKSKRVSSLDSSTHKSSDN------ 126
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS 147
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +G
Sbjct: 127 --KLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGK 177
Query: 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207
DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF
Sbjct: 178 DLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDF 233
Query: 208 -DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ V
Sbjct: 234 KDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVV 290
Query: 267 LDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
LDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +
Sbjct: 291 LDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPPWVYKVAKKYMKSRYEQV 350
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA-- 380
DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 351 DLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMN 410
Query: 381 -DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+D
Sbjct: 411 PHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQD 470
Query: 440 VEAYIHRSGRTGRAG--------------------------------------------V 455
VE+YIHRSGRTGRAG +
Sbjct: 471 VESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSM 530
Query: 456 EAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLED 515
+A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S +
Sbjct: 531 DAIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKG 588
Query: 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRS 575
VT+ LE+ + I S A+ L R L V + M L G FDVP + + ++
Sbjct: 589 FVTMTLESPEEIQDISCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQA 648
Query: 576 GADNAANVSLEVLKQLPPLQE 596
++ + L + +LP ++E
Sbjct: 649 EWHDSDWI-LSLPAKLPEIEE 668
>gi|345798960|ref|XP_850174.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Canis lupus
familiaris]
Length = 739
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 238/620 (38%), Positives = 335/620 (54%), Gaps = 77/620 (12%)
Query: 29 ETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKK 88
+TE + SD+ K K +I+E E++S+ S L + S+
Sbjct: 74 DTEEGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKRVSSLDSSTHKSSDN------- 126
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +G D
Sbjct: 127 -KLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKD 178
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF
Sbjct: 179 LIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFK 234
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VL
Sbjct: 235 DI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVL 291
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +D
Sbjct: 292 DEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVD 351
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA--- 380
LVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 352 LVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNP 411
Query: 381 DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 412 HIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDV 471
Query: 441 EAYIHRSGRTGRAG--------------------------------------------VE 456
E+YIHRSGRTGRAG ++
Sbjct: 472 ESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMD 531
Query: 457 AAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S +
Sbjct: 532 AIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGF 589
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT+ LE+ + I S A+ L R L V + M L G FDVP + + ++
Sbjct: 590 VTMTLESPEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAE 649
Query: 577 ADNAANVSLEVLKQLPPLQE 596
++ + L + +LP ++E
Sbjct: 650 WHDSDWI-LSLPAKLPEIEE 668
>gi|149511217|ref|XP_001519340.1| PREDICTED: nucleolar RNA helicase 2 [Ornithorhynchus anatinus]
Length = 757
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 255/612 (41%), Positives = 338/612 (55%), Gaps = 75/612 (12%)
Query: 92 EPEAGVEEQERGESEHPN-AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
EP+A E Q+ +E A S F IS + LK++G+ LFPIQA TF V G D++
Sbjct: 154 EPKAADEPQQHLTAEQKEGAFSNFSISKETIQLLKARGVTYLFPIQAKTFGHVSSGKDVI 213
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DV 209
+ARTG GKT +F +P++E L + K GR P VLVL PTRELA QV DF D+
Sbjct: 214 AQARTGTGKTFSFAIPLIEKLQ----RDLKDQKRGRLPKVLVLTPTRELAIQVGRDFSDI 269
Query: 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269
LT C YGG Y+ Q ++ GID+++GTPGRI+DHI+ G ++L+SL+ VLDE
Sbjct: 270 ---TKKLTVACFYGGTAYNGQINHIRNGIDILVGTPGRIRDHIQSGRLNLTSLQHVVLDE 326
Query: 270 ADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326
D+ML MGF E VE IL K + + QTLLFSAT P WV ++ K++K + +DL+
Sbjct: 327 VDQMLDMGFAEQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKVKYEQVDLI 386
Query: 327 GNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLPG 385
G + K + V H+ + C + R+ VI +I+ YS + GRTI+F TK+ A++L+ L P
Sbjct: 387 GKKTQKTAMTVEHLAIKCHWAQRAAVIGTVIQVYSGTHGRTIVFCRTKKEATELS-LSPA 445
Query: 386 ----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE 441
A++LHGDI Q QRE+TL GFRSG F LVATNVAARGLDI +V L++Q PP DVE
Sbjct: 446 IKQDAQSLHGDIPQKQREITLKGFRSGAFGVLVATNVAARGLDIPEVDLVVQSSPPEDVE 505
Query: 442 AYIHRSGRTGRAG--------VEAAE--TITQVS-------------------------- 465
+YIHRSGRTGRAG +A E ++QV
Sbjct: 506 SYIHRSGRTGRAGRTGICVCFYQAKEEYQLSQVEQKAGITFKRIGVPTTSEVVKASSKDV 565
Query: 466 ----DSV----IPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHV 517
DS+ I FK A EL+ G A A A+ G T ++ RSL++S V
Sbjct: 566 LRSLDSIPLHAINYFKQPARELIEEKGAVDALAAAIAVIS--GVTSVEQRSLINSAVGFV 623
Query: 518 TVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGA 577
T+ L+ ++T S+A+ L+ L EE V M L G FDVP A ++L +
Sbjct: 624 TMTLQCSVEMHTLSYAWRSLKEQLGEEIEGKVNHMCLLKGKMGVCFDVPKATVELIQDQW 683
Query: 578 DNAANVSLEVLKQLPPLQE-----REQSRGRFGGGGRGGFGGRGGNRFSGGRGGGFSDRR 632
+ L V +LP L+E RGR GG GRGGF NR S GGF+ R
Sbjct: 684 KDTRRWQLSVATELPELEEPYRDAGRGGRGRGGGRGRGGFSNNFRNRRS--EAGGFN--R 739
Query: 633 NDRFSGGFRGSK 644
NDRF RG K
Sbjct: 740 NDRFQK--RGQK 749
>gi|410975241|ref|XP_003994042.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Felis catus]
Length = 739
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 238/620 (38%), Positives = 336/620 (54%), Gaps = 77/620 (12%)
Query: 29 ETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKK 88
+TE + SD+ K K +I+E E++S+ S L + S+
Sbjct: 74 DTEEGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKRVSSLDSSTHKSSDN------- 126
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
K+E E+ EQ+ G A S F IS + LK +G+ LFPIQ TF V +G D
Sbjct: 127 -KLE-ESLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKD 178
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF
Sbjct: 179 LIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFK 234
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VL
Sbjct: 235 DI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVL 291
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +D
Sbjct: 292 DEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVD 351
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA--- 380
LVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 352 LVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNP 411
Query: 381 DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 412 HIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDV 471
Query: 441 EAYIHRSGRTGRAG--------------------------------------------VE 456
E+YIHRSGRTGRAG ++
Sbjct: 472 ESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMD 531
Query: 457 AAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S +
Sbjct: 532 AIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGF 589
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT+ LE+ + I S A+ L R L V + M L G FDVP + + ++
Sbjct: 590 VTMTLESPEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAE 649
Query: 577 ADNAANVSLEVLKQLPPLQE 596
++ + L + +LP ++E
Sbjct: 650 WHDSDWI-LSLPAKLPEIEE 668
>gi|395820612|ref|XP_003783657.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Otolemur garnettii]
Length = 737
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 242/623 (38%), Positives = 340/623 (54%), Gaps = 81/623 (13%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L+++ S KS++K+ +I+E E++S+ S L + K
Sbjct: 73 DAEEGFNRLSDEFSKSHKSRRKDLPN----GDIDEYEKKSKRISSLDSSTH--------K 120
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 121 SNDNKLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 173
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 174 GKDLIAQARTGTGKTFSFAIPLIERLQRSQETIKK----SRSPKVLVLAPTRELANQVAK 229
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 230 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 286
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 287 VVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 406
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 407 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 466
Query: 438 RDVEAYIHRSGRTGRAG------------------------------------------- 454
+DVE+YIHRSGRTGRAG
Sbjct: 467 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526
Query: 455 -VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSL 513
++A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S
Sbjct: 527 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASNFEPRSLITSD 584
Query: 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLF 573
+ VT+ LE+ + I S A+ L R L V + M L G FDVP A+ +
Sbjct: 585 KGFVTMTLESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTAESERL 644
Query: 574 RSGADNAANVSLEVLKQLPPLQE 596
++ ++ + L V +LP ++E
Sbjct: 645 QAEWHDSDWI-LSVPAKLPEIEE 666
>gi|344275095|ref|XP_003409349.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Loxodonta africana]
Length = 734
Score = 370 bits (951), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 241/623 (38%), Positives = 341/623 (54%), Gaps = 81/623 (13%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE + L+++ S KS++K+ +++E E++S+ S L + S+
Sbjct: 73 DTEEGFSRLSDEFSKSHKSRRKDLPN----GDVDECEKKSKRVSSLDGSTHRSSDN---- 124
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 125 ----KLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 173
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 174 GKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 229
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 230 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 286
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 287 VVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 346
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 347 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 406
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 407 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 466
Query: 438 RDVEAYIHRSGRTGRAG------------------------------------------- 454
+DVE+YIHRSGRTGRAG
Sbjct: 467 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526
Query: 455 -VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSL 513
++A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S
Sbjct: 527 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSD 584
Query: 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLF 573
+ VT+ LE+ + I S A+ L R L V + M L G FDVP D +
Sbjct: 585 KGFVTMTLESPEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTDSERL 644
Query: 574 RSGADNAANVSLEVLKQLPPLQE 596
++ ++ + L V +LP ++E
Sbjct: 645 QAEWHDSDWI-LSVPAKLPEIEE 666
>gi|426255666|ref|XP_004021469.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Ovis aries]
Length = 644
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 238/596 (39%), Positives = 326/596 (54%), Gaps = 80/596 (13%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L+++ S K ++K+ S +I+E E+RS+ S L + S+
Sbjct: 74 DTEEGCDRLSDEFSKSHKPRRKDLSN----GDIDEHEKRSKRVSSLNSSTHKSSDN---- 125
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 126 ----KLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 174
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 175 GKDLIAQARTGTGKTFSFAIPLIEKLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 230
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 231 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 287
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE IL K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 288 VVLDEVDQMLDLGFAEQVEDILHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 347
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 348 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 407
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 408 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 467
Query: 438 RDVEAYIHRSGRTGRAG------------------------------------------- 454
+DVE+YIHRSGRTGRAG
Sbjct: 468 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 527
Query: 455 -VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSL 513
++A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S
Sbjct: 528 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSD 585
Query: 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVAD 569
+ VT+ LE+ + I S A+ L R L V + M L G FDVP +
Sbjct: 586 KGFVTMTLESPEEIQDVSSAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTE 641
>gi|338716828|ref|XP_001503679.3| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Equus
caballus]
Length = 739
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 240/623 (38%), Positives = 341/623 (54%), Gaps = 81/623 (13%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L+++ S +KS++K+ S +I+E E++S+ L + +K
Sbjct: 74 DTEEGCNRLSDEFSKTQKSRRKDLSN----GDIDEYEKKSKRVPSL--------DSSTQK 121
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 122 SSDNKLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 174
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 175 GKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 230
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 231 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 287
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 288 VVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 347
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 348 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 407
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 408 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 467
Query: 438 RDVEAYIHRSGRTGRAG------------------------------------------- 454
+DVE+YIHRSGRTGRAG
Sbjct: 468 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 527
Query: 455 -VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSL 513
++A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S
Sbjct: 528 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSD 585
Query: 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLF 573
+ VT+ LE+ + I + A+ L R L V + M L G FDVP + +
Sbjct: 586 KGFVTMTLESPEEIQDVNSAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERL 645
Query: 574 RSGADNAANVSLEVLKQLPPLQE 596
++ ++ + L V +LP ++E
Sbjct: 646 QAEWHDSDWI-LSVPAKLPEIEE 667
>gi|296220525|ref|XP_002756346.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 3 [Callithrix
jacchus]
Length = 643
Score = 369 bits (947), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 244/649 (37%), Positives = 333/649 (51%), Gaps = 106/649 (16%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKTKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDSSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAG--------------------------------------------VEAAET 460
HRSGRTGRAG ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 461 ITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVV 520
+ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S + VT+
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMT 591
Query: 521 LEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVAD 569
LE+ + I S A+ L R L V + M L G FDVP +
Sbjct: 592 LESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTE 640
>gi|332218198|ref|XP_003258246.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Nomascus
leucogenys]
Length = 643
Score = 369 bits (947), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 244/649 (37%), Positives = 333/649 (51%), Gaps = 106/649 (16%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKTKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAG--------------------------------------------VEAAET 460
HRSGRTGRAG ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 461 ITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVV 520
+ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S + VT+
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMT 591
Query: 521 LEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVAD 569
LE+ + I S A+ L R L V + M L G FDVP +
Sbjct: 592 LESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTE 640
>gi|395741709|ref|XP_003777630.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pongo
abelii]
gi|194374303|dbj|BAG57047.1| unnamed protein product [Homo sapiens]
Length = 643
Score = 369 bits (947), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 244/649 (37%), Positives = 333/649 (51%), Gaps = 106/649 (16%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAG--------------------------------------------VEAAET 460
HRSGRTGRAG ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 461 ITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVV 520
+ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S + VT+
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMT 591
Query: 521 LEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVAD 569
LE+ + I S A+ L R L V + M L G FDVP +
Sbjct: 592 LESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTE 640
>gi|410975243|ref|XP_003994043.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Felis catus]
Length = 645
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 234/593 (39%), Positives = 322/593 (54%), Gaps = 76/593 (12%)
Query: 29 ETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKK 88
+TE + SD+ K K +I+E E++S+ S L + S+
Sbjct: 74 DTEEGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKRVSSLDSSTHKSSDN------- 126
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
K+E E+ EQ+ G A S F IS + LK +G+ LFPIQ TF V +G D
Sbjct: 127 -KLE-ESLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKD 178
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF
Sbjct: 179 LIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFK 234
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VL
Sbjct: 235 DI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVL 291
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +D
Sbjct: 292 DEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVD 351
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA--- 380
LVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 352 LVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNP 411
Query: 381 DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 412 HIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDV 471
Query: 441 EAYIHRSGRTGRAG--------------------------------------------VE 456
E+YIHRSGRTGRAG ++
Sbjct: 472 ESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMD 531
Query: 457 AAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S +
Sbjct: 532 AIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGF 589
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVAD 569
VT+ LE+ + I S A+ L R L V + M L G FDVP +
Sbjct: 590 VTMTLESPEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTE 642
>gi|194376400|dbj|BAG62959.1| unnamed protein product [Homo sapiens]
Length = 711
Score = 369 bits (946), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 248/676 (36%), Positives = 346/676 (51%), Gaps = 107/676 (15%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEDTLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVAWFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAG--------------------------------------------VEAAET 460
HRSGRTGRAG ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 461 ITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVV 520
+ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S + VT+
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMT 591
Query: 521 LEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNA 580
LE+ + I S A+ L R L V + M L G FDVP + + ++ ++
Sbjct: 592 LESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEWHDS 651
Query: 581 ANVSLEVLKQLPPLQE 596
+ L V +LP ++E
Sbjct: 652 DWI-LSVPAKLPEIEE 666
>gi|332834199|ref|XP_003312636.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
troglodytes]
gi|397489928|ref|XP_003815963.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
paniscus]
Length = 643
Score = 369 bits (946), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 244/649 (37%), Positives = 333/649 (51%), Gaps = 106/649 (16%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGITDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLP 384
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A +
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ 413
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YI
Sbjct: 414 NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYI 473
Query: 445 HRSGRTGRAG--------------------------------------------VEAAET 460
HRSGRTGRAG ++A +
Sbjct: 474 HRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRS 533
Query: 461 ITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVV 520
+ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S + VT+
Sbjct: 534 LASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMT 591
Query: 521 LEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVAD 569
LE+ + I S A+ L R L V + M L G FDVP +
Sbjct: 592 LESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTE 640
>gi|16716475|ref|NP_444413.1| ATP-dependent RNA helicase DDX50 [Mus musculus]
gi|55976576|sp|Q99MJ9.1|DDX50_MOUSE RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
box protein 50; AltName: Full=Gu-beta; AltName:
Full=Nucleolar protein Gu2
gi|13540306|gb|AAK29403.1|AF334104_1 nucleolar protein GU2 [Mus musculus]
Length = 734
Score = 368 bits (945), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 221/539 (41%), Positives = 306/539 (56%), Gaps = 62/539 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 194
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 195 RLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 247
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 248 SQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 307
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 308 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 367
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 368 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 427
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 428 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVC 487
Query: 455 -------------------------------------VEAAETITQVSDSVIPAFKSAAE 477
++A ++ VS + + F+ +A+
Sbjct: 488 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 547
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
L+ G A + LA ALA G + + RSL++S + VT+ LE+ + I S A+ L
Sbjct: 548 RLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKEL 605
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 596
R L V V M L G FDVP ++ + ++ ++ + L V +LP ++E
Sbjct: 606 NRKLSSNAVSHVTRMCLLKGNMGVCFDVPTSESERLQAEWHDSDWI-LSVPAKLPEIEE 663
>gi|60551791|gb|AAH90996.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Mus musculus]
Length = 734
Score = 368 bits (945), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 221/539 (41%), Positives = 306/539 (56%), Gaps = 62/539 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 194
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 195 RLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 247
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 248 SQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 307
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 308 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 367
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 368 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 427
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 428 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVC 487
Query: 455 -------------------------------------VEAAETITQVSDSVIPAFKSAAE 477
++A ++ VS + + F+ +A+
Sbjct: 488 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 547
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
L+ G A + LA ALA G + + RSL++S + VT+ LE+ + I S A+ L
Sbjct: 548 RLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKEL 605
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 596
R L V V M L G FDVP ++ + ++ ++ + L V +LP ++E
Sbjct: 606 NRKLSSNAVSHVTRMCLLKGNMGVCFDVPTSESERLQAEWHDSDWI-LSVPAKLPEIEE 663
>gi|26334341|dbj|BAC30888.1| unnamed protein product [Mus musculus]
Length = 669
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 221/539 (41%), Positives = 306/539 (56%), Gaps = 62/539 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 70 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 129
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 130 RLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 182
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 183 SQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 242
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 243 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 302
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 303 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 362
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 363 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVC 422
Query: 455 -------------------------------------VEAAETITQVSDSVIPAFKSAAE 477
++A ++ VS + + F+ +A+
Sbjct: 423 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 482
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
L+ G A + LA ALA G + + RSL++S + VT+ LE+ + I S A+ L
Sbjct: 483 RLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKEL 540
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 596
R L V V M L G FDVP ++ + ++ ++ + L V +LP ++E
Sbjct: 541 NRKLSSNAVSHVTRMCLLKGNMGVCFDVPTSESERLQAEWHDSDWI-LSVPAKLPEIEE 598
>gi|395501398|ref|XP_003755082.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Sarcophilus harrisii]
Length = 736
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 221/544 (40%), Positives = 308/544 (56%), Gaps = 62/544 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A SRF IS + LK++G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 135 AFSRFPISEETVKLLKARGVTYLFPIQVKTFSPVYEGKDLIAQARTGTGKTFSFAIPLIE 194
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L + K R+P VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 195 KLQRDQEEMKK----NRSPKVLVLAPTRELANQVAKDFQDI---TRKLSVACFYGGTPYQ 247
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML MGF + VE I+
Sbjct: 248 GQINHIRRGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDMGFADQVEDIIHG 307
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + QTLLFSAT P WV ++ K++K+ + IDLVG K +T V H+ + C
Sbjct: 308 SYKTGSEDNPQTLLFSATCPQWVYKVAKKYMKTKYEEIDLVGKMTQKTATTVEHLAIQCH 367
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R+ VI D+I+ YS + GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 368 WSQRAAVIGDVIQVYSGNDGRAIIFCETKKNVAEMALNPHIKQNAQCLHGDIAQSQREIT 427
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 428 LKGFREGNFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICIC 487
Query: 455 -------------------------------------VEAAETITQVSDSVIPAFKSAAE 477
++A ++ VS + F+ +A+
Sbjct: 488 FYQPNERGQLKYVEGKAGITFKRVGVPTTMDLVKSRSMDAIRSLASVSFVAVEFFRPSAQ 547
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
L+ G A + LA ALA G + + RSL++S + VT+ L++ + + S A L
Sbjct: 548 RLIEEKG--AVDALAAALAHISGASSFEPRSLINSDKGFVTMTLQSPEELQDISTARKEL 605
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQER 597
R L + + + M L G FD+P ++ +L ++ N ++ L V LP L+E
Sbjct: 606 SRKLSSDTMSRIVRMCLLKGKMGVCFDIPTSESELMQAEW-NDSDWILSVPDALPELEEY 664
Query: 598 EQSR 601
R
Sbjct: 665 YDGR 668
>gi|199561314|ref|NP_001013216.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
Length = 734
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 221/539 (41%), Positives = 305/539 (56%), Gaps = 62/539 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 194
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L C YGG Y
Sbjct: 195 RLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLNVACFYGGTSYQ 247
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 248 SQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 307
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 308 SYKSDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 367
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 368 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 427
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 428 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVC 487
Query: 455 -------------------------------------VEAAETITQVSDSVIPAFKSAAE 477
++A ++ VS + + F+ +A+
Sbjct: 488 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 547
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
L+ G A + LA ALA G + + RSL++S + VT+ LE+ + I S A+ L
Sbjct: 548 RLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKEL 605
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 596
R L V V M L G FDVP ++ + ++ ++ + L V +LP ++E
Sbjct: 606 NRKLSSNAVSQVTRMCLLKGNMGVCFDVPTSESERLQAEWHDSDWI-LSVPAKLPEIEE 663
>gi|311271292|ref|XP_003133100.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Sus scrofa]
Length = 738
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 238/623 (38%), Positives = 340/623 (54%), Gaps = 81/623 (13%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L ++ S +KS++K+ S +IEE ++S+ S L + S+ + +
Sbjct: 74 DTEEGCNRLADEFSKSRKSRRKDLSN----GDIEEYGKKSKRVSSLDSSTHKSSDNKPE- 128
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
E+ EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 129 --------ESLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 174
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 175 GKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 230
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 231 DFKDI---TKKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 287
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 288 VVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 347
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 348 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 407
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 408 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 467
Query: 438 RDVEAYIHRSGRTGRAG------------------------------------------- 454
+DVE+YIHRSGRTGRAG
Sbjct: 468 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 527
Query: 455 -VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSL 513
++A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S
Sbjct: 528 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSD 585
Query: 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLF 573
+ VT+ LE+ + I S A+ L + L + + M L G FDV A+ +
Sbjct: 586 KGFVTMTLESPEEIQDVSCAWKELNKKLSSNVLSQITRMCLLKGNMGVCFDVSTAESERL 645
Query: 574 RSGADNAANVSLEVLKQLPPLQE 596
++ ++ + L V +LP ++E
Sbjct: 646 QAEWHDSDWI-LSVPAKLPEIEE 667
>gi|338716830|ref|XP_003363525.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Equus
caballus]
Length = 644
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 235/596 (39%), Positives = 327/596 (54%), Gaps = 80/596 (13%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L+++ S +KS++K+ S +I+E E++S+ L + +K
Sbjct: 74 DTEEGCNRLSDEFSKTQKSRRKDLSN----GDIDEYEKKSKRVPSL--------DSSTQK 121
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 122 SSDNKLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 174
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 175 GKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 230
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 231 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 287
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 288 VVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 347
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 348 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 407
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 408 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 467
Query: 438 RDVEAYIHRSGRTGRAG------------------------------------------- 454
+DVE+YIHRSGRTGRAG
Sbjct: 468 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 527
Query: 455 -VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSL 513
++A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S
Sbjct: 528 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSD 585
Query: 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVAD 569
+ VT+ LE+ + I + A+ L R L V + M L G FDVP +
Sbjct: 586 KGFVTMTLESPEEIQDVNSAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTE 641
>gi|351702494|gb|EHB05413.1| ATP-dependent RNA helicase DDX50 [Heterocephalus glaber]
Length = 737
Score = 366 bits (939), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 238/610 (39%), Positives = 335/610 (54%), Gaps = 77/610 (12%)
Query: 39 SDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVE 98
SD+ + K K +I+E E++S+ S +L+S +K K + E
Sbjct: 82 SDEFSTSPKLRKKDLPNGDIDECEKKSKQVS------SLESSTQKSSDNKLQ---ETLTR 132
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
EQ+ G A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG G
Sbjct: 133 EQKEG------AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTG 186
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLT 217
KT +F +P++E L +A KK+ R+P VLVL PTRELA QV +DF D+ L+
Sbjct: 187 KTFSFAIPLIERLQRN-QEAIKKS---RSPKVLVLAPTRELANQVAKDFKDI---TRKLS 239
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
C YGG Y +Q ++ GID++IGTPGRIKDH++ G +DLS L+ VLDE D+ML +G
Sbjct: 240 VACFYGGTSYQSQINHIRNGIDILIGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLG 299
Query: 278 FVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS 334
F E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+
Sbjct: 300 FAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAA 359
Query: 335 TNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALH 390
T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A + A+ LH
Sbjct: 360 TTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLH 419
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRT
Sbjct: 420 GDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRT 479
Query: 451 GRAG--------------------------------------------VEAAETITQVSD 466
GRAG ++A ++ VS
Sbjct: 480 GRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSY 539
Query: 467 SVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKP 526
+ + F+ +A+ L+ G A + LA ALA G + + RSL++ + VT+ LE+ +
Sbjct: 540 AAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITCDKGFVTMTLESPEE 597
Query: 527 IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLE 586
I S A+ L R L + M L G FDVP + + ++ ++ + L
Sbjct: 598 IQDVSCAWKELNRKLSSNAASQITRMCLLKGKMGVCFDVPTTESERLQAEWHDSDWI-LS 656
Query: 587 VLKQLPPLQE 596
V +LP ++E
Sbjct: 657 VPAKLPEIEE 666
>gi|355683371|gb|AER97085.1| DEAD box polypeptide 50 [Mustela putorius furo]
Length = 736
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 238/620 (38%), Positives = 333/620 (53%), Gaps = 78/620 (12%)
Query: 29 ETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKK 88
+TE + SD+ K K +I+E E++S+ + S K
Sbjct: 73 DTEEGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSK---------RVSSLDSSPKSSD 123
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
KVE E EQ+ G A S F IS + LK +G+ LFPIQ TF V +G D
Sbjct: 124 NKVE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKD 176
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF
Sbjct: 177 LIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFK 232
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VL
Sbjct: 233 DI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVL 289
Query: 268 DEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324
DE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +D
Sbjct: 290 DEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVD 349
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA--- 380
LVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 350 LVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNP 409
Query: 381 DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DV
Sbjct: 410 HIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDV 469
Query: 441 EAYIHRSGRTGRAG--------------------------------------------VE 456
E+YIHRSGRTGRAG ++
Sbjct: 470 ESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMD 529
Query: 457 AAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S +
Sbjct: 530 AIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGF 587
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VT+ LE+ + I S A+ L R L V + M L G FDVP + + ++
Sbjct: 588 VTMTLESPEEIEDISCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAE 647
Query: 577 ADNAANVSLEVLKQLPPLQE 596
++ + L + +LP ++E
Sbjct: 648 WHDSDWI-LSLPAKLPEIEE 666
>gi|291404258|ref|XP_002718495.1| PREDICTED: nucleolar protein GU2 [Oryctolagus cuniculus]
Length = 735
Score = 365 bits (937), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 219/539 (40%), Positives = 304/539 (56%), Gaps = 62/539 (11%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
+ S F IS + LK +G+ LFPIQ TF + +G DL+ +ARTG GKT +F +P++E
Sbjct: 136 SFSNFSISEETVKLLKGRGVTYLFPIQVKTFGPIYEGKDLIAQARTGTGKTFSFAIPLIE 195
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 196 RLQRNQETVKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 248
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 249 SQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 308
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 309 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 368
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 369 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 428
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 429 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICIC 488
Query: 455 -------------------------------------VEAAETITQVSDSVIPAFKSAAE 477
++A ++ VS + + F+ +A+
Sbjct: 489 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 548
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
L+ G A + LA ALA G + + RSL++S + VT+ LE+ + I S A+ L
Sbjct: 549 RLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMTLESPEEIQDVSSAWKEL 606
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 596
R L V V M L G FDVP + + ++ ++ + L V +LP ++E
Sbjct: 607 NRKLSSNAVSQVTRMCLLKGNMGVCFDVPTIESESLQAEWHDSDWI-LSVPAKLPEIEE 664
>gi|440895815|gb|ELR47909.1| Nucleolar RNA helicase 2, partial [Bos grunniens mutus]
Length = 680
Score = 364 bits (935), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 228/526 (43%), Positives = 304/526 (57%), Gaps = 68/526 (12%)
Query: 81 KEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTF 140
KE ++ +++E E VE++E A S F IS + LK++G+ LFPIQA TF
Sbjct: 166 KEAASEENSELEQEMTVEQKE-------GAFSNFPISEETIKLLKARGVTFLFPIQAKTF 218
Query: 141 DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200
V G DL+ +ARTG GKT +F +P++E L G + K+ GRAP VLVL PTRELA
Sbjct: 219 HHVYSGKDLIAQARTGTGKTFSFAIPLVEKLL-GELQDRKR---GRAPQVLVLAPTRELA 274
Query: 201 KQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDL 259
QV DF D+ L C YGG PY Q ++K GID+++GTPGRIKDH++ G +DL
Sbjct: 275 SQVSRDFSDI---TKKLAVACFYGGTPYGGQIERMKNGIDILVGTPGRIKDHLQNGKLDL 331
Query: 260 SSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFL 316
+ LK VLDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++
Sbjct: 332 TKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPYWVFNVAKKYM 391
Query: 317 KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKES 375
KS + +DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+
Sbjct: 392 KSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFQGRTIIFCETKKE 451
Query: 376 ASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII 432
A +L+ + A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++
Sbjct: 452 AQELSQNVAVRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVV 511
Query: 433 QCEPPRDVEAYIHRSGRTGRA--------------------------------GVEAAET 460
Q PP+DVE+YIHRSGRTGRA GV +
Sbjct: 512 QSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSPTE 571
Query: 461 ITQVS--------DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRS 508
I + S DSV P FK +AE+L+ G A E LA ALA G T + RS
Sbjct: 572 IIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRS 629
Query: 509 LLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMAL 554
L++S VT++L + S+A+ L+ L E+ VKGM
Sbjct: 630 LINSEAGFVTMILRCSIEMPNISYAWKELKEQLGEDIDSKVKGMVF 675
>gi|428186550|gb|EKX55400.1| hypothetical protein GUITHDRAFT_57670, partial [Guillardia theta
CCMP2712]
Length = 513
Score = 364 bits (934), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 213/505 (42%), Positives = 300/505 (59%), Gaps = 63/505 (12%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
EKLK+ GI SLFPIQ+ TF+ V++G DL+ RARTG GKTL+F+LP+ E + +
Sbjct: 4 EKLKAGGITSLFPIQSATFNHVMEGKDLIARARTGTGKTLSFILPVHEQMLRLKEEGELD 63
Query: 182 T-GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
T YGR PS L+L PTRELAKQ+ + ++ A G + +YGG Y Q L+KG+D
Sbjct: 64 TRKYGRTPSCLILSPTRELAKQIAKVLEMVA-ADGFSVLTVYGGVAYAEQGQALRKGVDW 122
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV--EDAN----K 294
V+GTPGR+ D +ERG + L+++++ VLDEADEML +GF + V+ I V E+A
Sbjct: 123 VVGTPGRVIDFMERGQLKLNNVRYFVLDEADEMLNIGFKDAVDKIFKGVMGEEAESKPEH 182
Query: 295 VQTLLFSATLPSWVKHISTKFL-KSDKKTIDLV-GNEKMKASTNVRHIVLPCSSSARSQV 352
VQTLLFSAT+P W+ + K+ K++ +DLV G + + +T + H+ +PC ++R++
Sbjct: 183 VQTLLFSATIPDWIAQTTEKYFDKNNTAHVDLVSGQQGQETATRIEHLCIPCPWNSRART 242
Query: 353 IPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSG 408
I DI+ CY+ S G+TIIFTETK+ A++LA + LHGDI Q+QRE T FR G
Sbjct: 243 IGDIVLCYAGSHGKTIIFTETKKEANELALDDAIKQDCAVLHGDIAQAQRETTFQAFRDG 302
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG-------------- 454
KF LVAT+VAARGLDI +V L+I C P +D + Y+HRSGRTGRAG
Sbjct: 303 KFRCLVATDVAARGLDIPEVDLVIMCHPTKDADTYVHRSGRTGRAGRSGVAVTFFTPREM 362
Query: 455 --VEAAE----------------------------TITQVSDSVIPAFKSAAEELLNNSG 484
+ A E ++ +V V+P F+ AEE++ + G
Sbjct: 363 HQLRAIEWRIKTKMRQISAPQPEEIVKANARDIKLSVEEVHSDVLPLFEKTAEEMIQDMG 422
Query: 485 LSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPE 543
+ A L ALA G T+ + +RSLLSSLE T V++ +P+ F +LR+ LP+
Sbjct: 423 ATKA--LCAALAVIAGQTKPLPARSLLSSLEGFKTFVIKTTQPMAESRMVFVLLRKVLPQ 480
Query: 544 EKVELVKGMALTADG--NGAVFDVP 566
E V +KG+ L + GA FDVP
Sbjct: 481 ELVSSIKGIRLFKEQPVMGAAFDVP 505
>gi|126343381|ref|XP_001380653.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Monodelphis domestica]
Length = 744
Score = 364 bits (934), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 225/567 (39%), Positives = 317/567 (55%), Gaps = 69/567 (12%)
Query: 87 KKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG 146
K +K+E + E++E A SRF IS + LK++G+ LFPIQ F V +G
Sbjct: 127 KYSKLEEDLTPEQKE-------GAFSRFPISEETIKLLKARGVTYLFPIQVKAFSPVYEG 179
Query: 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206
DL+ +ARTG GKT +F +P++E L + K R+P VLVL PTRELA QV +D
Sbjct: 180 KDLIAQARTGTGKTFSFAIPLIEKLQRDQEELKKT----RSPKVLVLAPTRELANQVAKD 235
Query: 207 F-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265
F D+ L+ C YGG PY Q +++GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 236 FQDI---TRKLSVACFYGGTPYQGQINHIRRGIDILVGTPGRIKDHLQSGRLDLSKLRHV 292
Query: 266 VLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKT 322
VLDE D+ML MGF + VE I+ K + QTLLFSAT P WV ++ K++K+ +
Sbjct: 293 VLDEVDQMLDMGFADQVEDIIHGSYKTGSEDNPQTLLFSATCPQWVYKVAKKYMKTKYEE 352
Query: 323 IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA- 380
IDLVG K +T V H+ + C S R+ VI D+I+ YS + GR IIF ETK++ +++A
Sbjct: 353 IDLVGKMTQKTATTVEHLAIQCHWSQRAAVIGDVIQVYSGNDGRAIIFCETKKNVAEMAL 412
Query: 381 --DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR 438
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+
Sbjct: 413 NPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQ 472
Query: 439 DVEAYIHRSGRTGRAG-------------------------------------------- 454
DVE+YIHRSGRTGRAG
Sbjct: 473 DVESYIHRSGRTGRAGRTGICICFYQPNERGQLKYVEGKAGITFKRVGVPTTMDLVKSRS 532
Query: 455 VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLE 514
++A ++ VS + F+ +A+ L+ G A + LA ALA G + + RSL++S +
Sbjct: 533 MDAIRSLASVSFVAVEFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLINSDK 590
Query: 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFR 574
VT+ L++ + + S A L R L + + + M L G FD+P ++ +L +
Sbjct: 591 GFVTMTLQSPEELQDISTARKELSRKLSSDTMSRIVRMCLLKGKMGVCFDIPTSESELMQ 650
Query: 575 SGADNAANVSLEVLKQLPPLQEREQSR 601
+ N ++ L V LP L+E R
Sbjct: 651 AEW-NDSDWILSVPDALPELEEYYDGR 676
>gi|146197863|dbj|BAF57642.1| nucleolar RNA helicase II/Gu protein [Dugesia japonica]
Length = 627
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 225/588 (38%), Positives = 312/588 (53%), Gaps = 73/588 (12%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+S F +S L++KL+++G+++LFPIQ TF + G D++ +A+TG GKT AF LP+L
Sbjct: 46 LSNFPLSSDLQKKLQARGVKALFPIQIKTFHHIHTGKDVIAQAKTGTGKTFAFALPVLTK 105
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
L N K GR P V+V+ PTREL Q+ DF+ L +YGG Y Q
Sbjct: 106 LENSGIDGLKS---GRKPKVIVMAPTRELVSQIASDFESLISK-NLKVLSIYGGVSYEKQ 161
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV- 289
LK G+D++ G PGR++D I +G++DLS +++ +LDE D ML MGF + VE IL +
Sbjct: 162 TTALKNGVDIIAGAPGRVRDLINKGHLDLSKIEYVILDEVDRMLDMGFSDIVEEILSYIY 221
Query: 290 ---EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346
D QTLLFSAT+P+W+ +I K+LK D + L+ KA++ V H+ + C
Sbjct: 222 PSETDKKGPQTLLFSATMPNWIHNIVKKYLKPDAIKVCLIDENGSKAASTVEHLAIQCPW 281
Query: 347 SARSQVIPDIIRCYSSG--GRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
R+ IPDIIR + G R IIF E K+ A +LA + LHGD+ Q +RE+
Sbjct: 282 RERAGTIPDIIRVHGGGNQARCIIFCERKKDADELASHSAMKSDCHVLHGDVPQEKRELV 341
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
L FR GK+ LV TNVAARGLD+ D+ L+IQC PP+DVE YIHRSGRTGRAG
Sbjct: 342 LKKFREGKYSVLVTTNVAARGLDVPDIDLVIQCHPPKDVEDYIHRSGRTGRAGRKGVCIC 401
Query: 455 ------------VE--------------AAETITQVSDSVIPAFKSAAEELLNNSGLSAA 488
VE AA I + I AFKS E + + SA
Sbjct: 402 FYEPKEKYDLQKVEKLAGFTFKRIFPPSAASIIEANLNDTIEAFKSIPETVCESFKESAI 461
Query: 489 EL---------LAKALAKAVGYT-EIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLR 538
+L +A ALAK G E+K+RSLLSS+E T +L I +A+ L+
Sbjct: 462 KLIEQFGAEKAMALALAKISGKVEELKNRSLLSSMEGFTTYMLTTNDEIKFKGYAYSALK 521
Query: 539 RFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGADNAANVSLEVLKQLPPLQER 597
+++ E VE VK + VFD+ D + + D+ N L L +LP +++
Sbjct: 522 KYISTEIVEQVKSLQFVKGRKSLVFDLASEHDESISTNWVDSNFN-KLTKLSELPEIEKS 580
Query: 598 EQSRGRFGGGGRGGFGGRGGNRFSGGRGGGFSDRR---NDRFSGGFRG 642
E+ G F GG+ G R GGF+DR+ F G F G
Sbjct: 581 EERNGGFRNGGQ------------GRRPGGFNDRKFGMKRSFGGSFNG 616
>gi|443708232|gb|ELU03439.1| hypothetical protein CAPTEDRAFT_52524, partial [Capitella teleta]
Length = 707
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 223/565 (39%), Positives = 315/565 (55%), Gaps = 66/565 (11%)
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIES--LFPIQAMTFDMVLD 145
KA V EA ++ E E+ A F IS EKLK K + S LFPIQA TFD++++
Sbjct: 94 KAAVNGEAEEKDVEVSEAAMKGAFENFNISAETVEKLKGKLLFSPFLFPIQAQTFDIIME 153
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G D +GRARTG GKT AF +P++E L P ++ AP VLV+LP RELA QV
Sbjct: 154 GVDCIGRARTGTGKTFAFAIPVVEMLNKKPAPTARG-----APRVLVMLPVRELAIQVAG 208
Query: 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265
+F L C+YGG P + Q L++G+DVV+GTPGRI D I+R +DLS L+
Sbjct: 209 NFKSLASR-NLAVVCVYGGEPIYTQISALRRGVDVVVGTPGRIMDMIKRNELDLSKLEHV 267
Query: 266 VLDEADEMLRMGFVEDVELILGKVEDANKV----QTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D ML MGF E+V+ IL + N V QTLLFSAT+P WV+ S K++K + +
Sbjct: 268 VLDEVDRMLDMGFAENVDEILQTRYNENDVESNPQTLLFSATMPDWVQKTSQKYMKKNTR 327
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
IDLVG E+++ S V+H+ L C+ R+ + D++R YS S GR ++F ETK A LA
Sbjct: 328 NIDLVGRERVRTSITVQHLALQCNYQDRAATVGDVLRVYSGSQGRAMVFCETKRDADDLA 387
Query: 381 DLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP 436
+ P LHGDI Q +R++ L FR G++ L+ T+VAARGLDI +V L++QC P
Sbjct: 388 -VSPCIGIETHVLHGDIPQEKRQLVLQKFREGRYKCLITTDVAARGLDIPEVDLVVQCCP 446
Query: 437 PRDVEAYIHRSGRTGRAG---------------------------------------VEA 457
P+DV++YIHRSGRTGRAG ++A
Sbjct: 447 PKDVDSYIHRSGRTGRAGRQGTCVLFYKYGSEYEVQRVERTAGFKFRRVGAPSRNEIIDA 506
Query: 458 AE-----TITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSS 512
A + V + + F+ +A+ L+ G + +A ALA G TE+KSRSLL+S
Sbjct: 507 AARDARLVLATVPEETLGHFRESAKLLIEEKG--GVDAVAAALAVITGNTEMKSRSLLTS 564
Query: 513 LEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLD- 571
E T V + I + + + + R LP E + V+ + D G VFD+P +D+D
Sbjct: 565 KEGFTTYVFTSTNEIKSMGYFWSAMERQLPSEIKDKVRAPRMQKDQMGCVFDLP-SDVDA 623
Query: 572 LFRSGADNAANVSLEVLKQLPPLQE 596
L + ++ +L V +LP +++
Sbjct: 624 LVENYWQDSEYHTLNVATELPEMED 648
>gi|431904164|gb|ELK09586.1| ATP-dependent RNA helicase DDX50 [Pteropus alecto]
Length = 738
Score = 362 bits (930), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 218/537 (40%), Positives = 302/537 (56%), Gaps = 62/537 (11%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E L
Sbjct: 141 SNFPISEETVKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERL 200
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQ 230
K R+P VLVL PTRELA QV +DF D+ L+ C YGG Y +Q
Sbjct: 201 QRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQSQ 253
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--- 287
++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 254 INHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESY 313
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
K + + QTLLFSAT P WV ++ K++K + +DLVG KA+T V H+ + C S
Sbjct: 314 KTDSEDNPQTLLFSATCPQWVYKVAKKYMKPRYEQVDLVGKMTQKAATTVEHLAIQCHWS 373
Query: 348 ARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLA 403
R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+TL
Sbjct: 374 QRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLK 433
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG--------- 454
GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 434 GFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFY 493
Query: 455 -----------------------------------VEAAETITQVSDSVIPAFKSAAEEL 479
++A ++ VS + + F+ +A+ L
Sbjct: 494 QPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRL 553
Query: 480 LNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRR 539
+ G A + LA ALA G + + RSL++S + VT+ LE+ + I S A+ L R
Sbjct: 554 IEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNR 611
Query: 540 FLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 596
L V + M L G FDVP + + ++ ++ + L V +LP ++E
Sbjct: 612 KLNSNAVSQITRMFLLKGNMGVCFDVPTTESESLQAEWHDSDWI-LSVPAKLPEIEE 667
>gi|325183265|emb|CCA17723.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
gi|325183911|emb|CCA18369.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 660
Score = 357 bits (917), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 209/569 (36%), Positives = 302/569 (53%), Gaps = 69/569 (12%)
Query: 92 EPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
EP A +E ++ F I ++ LK GI +LFPIQAMTFD ++DG++L+G
Sbjct: 78 EPAAADAVEETCTKSSNPSLDDFAICAQTKKNLKKHGIANLFPIQAMTFDKIMDGNNLIG 137
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211
RARTG GKTLAF LP++E L K RAP V+ + PTRELA+QV +F+
Sbjct: 138 RARTGMGKTLAFALPVVEKLLQSKIKPVP----NRAPRVICVTPTRELARQVTTEFEKLD 193
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L + C+YGG PY Q + G D+VIGT GRI DHI+RGN+ ++ +F +LDEAD
Sbjct: 194 --TTLNTVCIYGGTPYQQQNAAFRSGTDIVIGTTGRIMDHIDRGNLRFANCEFLILDEAD 251
Query: 272 EMLRMGFVEDVELILGKVEDAN-KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
ML MGF ED++ I + + K Q LLFSAT+P W+ I+ +++ + ++LV +
Sbjct: 252 TMLEMGFREDIQRIFDATQKSGVKPQILLFSATIPKWLHEIADRYMDKKYEFVNLVQDSD 311
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLA---DLLPGA 386
+AS +V+H+ +PC +R ++ ++ Y RTIIF ETK+ ++L+ ++
Sbjct: 312 DQASLDVQHVAIPCHWQSRPTLLASLLGVYGKQNARTIIFAETKKDCNELSVHPEIKQDC 371
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR------DV 440
LHGDI Q+QRE T+ FR G+ L+AT+VAARGLD+N V L+I EPPR DV
Sbjct: 372 HVLHGDIAQAQRETTMKAFRDGQIRLLIATDVAARGLDMN-VDLVINSEPPRKASGYADV 430
Query: 441 EAYIHRSGRTGRAGV--------------------------------------------E 456
+ Y+HRSGRTGRAG +
Sbjct: 431 DTYVHRSGRTGRAGKKGVCITLYTPRQKELLDLIERKIGNKFIMRDQPSQEELIKVSAEK 490
Query: 457 AAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGY-TEIKSRSLLSSLED 515
A +++ QV +I F+ AEE L N A LA ALA G+ T + SL+S D
Sbjct: 491 AFKSMDQVDPVMIAIFEEKAEEYLENHEPKKA--LAVALACITGHATPPRPHSLMSGTPD 548
Query: 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVAD----LD 571
+VTV+ + K I + + L R E +K + +T D GA FD+P++ +
Sbjct: 549 YVTVLFTSSKEIRAKGYVWNALNRDFDPEVANNIKQLTITQDSYGACFDLPMSAREKLQE 608
Query: 572 LFRSGADNAANVSLEVLKQLPPLQEREQS 600
+ S + N + LP LQ+ + S
Sbjct: 609 IMSSSQQDRYNCPYSIPTTLPKLQQSQYS 637
>gi|432106714|gb|ELK32366.1| ATP-dependent RNA helicase DDX50 [Myotis davidii]
Length = 721
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 234/590 (39%), Positives = 323/590 (54%), Gaps = 81/590 (13%)
Query: 26 DFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKK 85
D EE L+ + S KS++K+ S +I+E E+ S+ S L + S+
Sbjct: 72 DTEEGYNTLSNEFSKSHKSRRKDLSN----GDIDEYEKTSKRVSSLDSSTHKSSDN---- 123
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
K+E E EQ+ G A S F IS + LK +G+ LFPIQ TF V +
Sbjct: 124 ----KLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYE 172
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +
Sbjct: 173 GKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAK 228
Query: 206 DF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+
Sbjct: 229 DFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRH 285
Query: 265 RVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
VLDE D+ML +GF + VE I+ K + + QTLLFSAT P WV ++ K++KS +
Sbjct: 286 VVLDEVDQMLDLGFADQVEDIIHESYKTDAEDNPQTLLFSATCPQWVYKVAKKYMKSRYE 345
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
+DLVG KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 346 QVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 405
Query: 381 ---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
+ A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP
Sbjct: 406 MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 465
Query: 438 RDVEAYIHRSGRTGRAG------------------------------------------- 454
+DVE+YIHRSGRTGRAG
Sbjct: 466 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 525
Query: 455 -VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSL 513
++A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S
Sbjct: 526 SMDAIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSD 583
Query: 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVF 563
+ VT+ LE+ + I S A+ L R L V + M L GN A +
Sbjct: 584 KGFVTMTLESPEEIQDVSCAWKELNRKLSSNAVSQITRMCLLK-GNMAEW 632
>gi|47218719|emb|CAG05691.1| unnamed protein product [Tetraodon nigroviridis]
Length = 727
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 226/552 (40%), Positives = 296/552 (53%), Gaps = 75/552 (13%)
Query: 139 TFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198
TFD V DG D++ +ARTG GKT +F +P++E L G + A + GRAP VLVL PTRE
Sbjct: 184 TFDPVYDGEDVIAQARTGTGKTFSFAIPLVEKL-QGDSAAPAR---GRAPKVLVLTPTRE 239
Query: 199 LAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI 257
LA QV +DF D+ L+ C YGG Y Q ++ GID+++GTPGRIKDH++ +
Sbjct: 240 LAIQVAKDFKDIIKK---LSIVCFYGGTSYMPQIEAIRNGIDILVGTPGRIKDHLQNHKL 296
Query: 258 DLSSLKFRVLDEADEMLRMGFVEDVELILG----KVEDANKVQTLLFSATLPSWVKHIST 313
DLS LK VLDE D+ML MGF E VE IL K D N QTLLFSAT P WV ++
Sbjct: 297 DLSKLKHVVLDEVDQMLDMGFAEQVEEILALSYKKDADTNP-QTLLFSATCPPWVYDVAK 355
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTET 372
K+++ K +DL+G + KA+T V H+ + C S R+ VI D+IR YS S GR I+F ET
Sbjct: 356 KYMRPSCKHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVIRVYSGSHGRAIVFCET 415
Query: 373 KESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429
K+ A++LA + A++LHGDI Q QRE TL GFR G F LVATNVAARGLDI +V
Sbjct: 416 KKEANELALNASIKQNAQSLHGDIPQKQRETTLKGFRKGSFEVLVATNVAARGLDIPEVD 475
Query: 430 LIIQCEPPRDVEAYIHRSGRTGRAG-------------------VEAAETIT-------- 462
L++QC PP+DVE+YIHRSGRTGRAG VE IT
Sbjct: 476 LVVQCSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEEDQLRYVENKAGITFRRVGVPT 535
Query: 463 -----------------QVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIK 505
+S + I F+ AAE+L+ G A + LA ALA G T ++
Sbjct: 536 ANDIIKSSSKDAVRFLDSISVAAIGYFREAAEKLIEEKG--AVDALAAALAHISGATALE 593
Query: 506 SRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDV 565
RSLLSS + T+ L ++ +A+ L+ L E+ + M G FDV
Sbjct: 594 QRSLLSSDAGYTTLQLTCSLEMHNIGYAWKTLKEQLGEQIETHIHRMTFLKGKTGVCFDV 653
Query: 566 PVADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGR------------FGGGGRGGFG 613
PV + + + L V +LP L+ + F G G
Sbjct: 654 PVDKVKEIQDNWKDCRRWQLTVATELPDLEVKPSRGRGGFRGGRGRSSGVFRNGNSGAGN 713
Query: 614 GRGGNRFSGGRG 625
RGG + S R
Sbjct: 714 KRGGQKRSFSRA 725
>gi|387191793|gb|AFJ68623.1| hypothetical protein NGATSA_3007300, partial [Nannochloropsis
gaditana CCMP526]
Length = 800
Score = 354 bits (909), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 219/540 (40%), Positives = 289/540 (53%), Gaps = 69/540 (12%)
Query: 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG 174
R+S + E L I PIQ TFD + +G D++GR+RTG GKTLAF LPILE++
Sbjct: 186 RVSPGVVESLAGANITHFTPIQRETFDPLFEGRDMIGRSRTGTGKTLAFGLPILEAVAKN 245
Query: 175 PTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
A K GR+PSV++L PTRELAKQ E G +GL +YGG PY Q L
Sbjct: 246 MEAAGTKNARGRSPSVIILAPTRELAKQCDEQLSRIGRPLGLWIRTIYGGVPYERQIRDL 305
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+ G DV++GTPGRI DH++RG + L+ +K +LDEADEML+MGF ED+E I D +
Sbjct: 306 ESGFDVLVGTPGRIMDHLDRGTLSLNDIKHIILDEADEMLKMGFAEDIEKIFSYF-DVTQ 364
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSSSARSQV 352
Q LLFSAT PSWV+ I+ K+LK + +D VG +A+T +RH+ +P S SAR V
Sbjct: 365 AQMLLFSATTPSWVQVIARKYLK-NPINVDAVGGGN-RAATTIRHVAVKVPDSYSARKNV 422
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSG 408
+ D+I +S GGR ++FT+TK A +L+ P A R LHGDI Q QRE+TL FR G
Sbjct: 423 LEDVIAAHSCGGRVMVFTQTKSEADELSTSSPYAAENTRVLHGDITQRQRELTLRQFRDG 482
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETIT------ 462
F L+AT+VAARG+DI +V L+IQ P D ++Y+HRSGRTGRAG E I
Sbjct: 483 FFKVLIATDVAARGIDIPEVDLVIQYRPCDDSDSYVHRSGRTGRAGREGTSVIIYSEPEW 542
Query: 463 --------------------------------------QVSDSVIPAFKSAAEELLNNSG 484
V V+P FK+ A EL+ S
Sbjct: 543 FKLRRLENDINIKFDKVGMPSIEDVVSGLCLAQTDKLKNVDAEVVPYFKAYAAELVAGSD 602
Query: 485 LSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPI-------YTPSFAFGVL 537
E+LA+ LA G SRSLL+ TVV EA P+ + G
Sbjct: 603 APVEEMLARCLAAMTGRKLTVSRSLLTGQHGMTTVVAEADGPLREWDVLDFVKGLYEGTD 662
Query: 538 RRFLPEEKVELVKGMALTADGNGAVFDVPV--ADLDLFRSGADNAANVSLEVLKQLPPLQ 595
R F+PE K L N AVFD+ A + + + A +SL + K +P L+
Sbjct: 663 RLFIPEVKF-------LWNRPNAAVFDLDTAKAKIVMAKFAEAEAPVMSLSLCKDMPRLE 715
>gi|407954645|dbj|BAM48570.1| malignant cell derived RNA helicase [Homo sapiens]
Length = 731
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 241/627 (38%), Positives = 339/627 (54%), Gaps = 77/627 (12%)
Query: 17 KMNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVN 76
KM +K+ D EE L+++ S KS++K+ +I+E E++S+ S L +
Sbjct: 65 KMKEKLN-GDTEEGFNRLSDEFSKSHKSRRKDLPN----GDIDEYEKKSKRVSSLDTSTH 119
Query: 77 LKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQ 136
S+ K+E E EQ+ G A S F IS + LK +G+ LFPIQ
Sbjct: 120 KSSDN--------KLE-ETLTREQKEG------AFSNFPISEETIKLLKGRGVTYLFPIQ 164
Query: 137 AMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196
TF V +G DL+ +ARTG GKT +F +P++E L K R+P VLVL PT
Sbjct: 165 LKTFGHVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPT 220
Query: 197 RELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG 255
RELA QV +DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G
Sbjct: 221 RELANQVAKDFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSG 277
Query: 256 NIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHIS 312
+DLS L+ VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++
Sbjct: 278 RLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVA 337
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTE 371
K++KS + + LVG KA+T V H+ + C S R VI D+++ YS S GR IIF E
Sbjct: 338 KKYMKSRYEQVALVGKMTQKAATPVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCE 397
Query: 372 TKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
TK++ +++A + A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLD +V
Sbjct: 398 TKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDNPEV 457
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAG------------------------------VEAA 458
L+IQ PP+DVE+YIHRSGRTGRAG V
Sbjct: 458 DLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVP 517
Query: 459 ETITQVSDSVIPAFKS---------AAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSL 509
T+ V + A +S +A+ L+ G A + LA ALA G + + RSL
Sbjct: 518 STMDLVKSKSMDAIRSLASVSYAAVSAQRLIEEKG--AVDALAAALAHISGASSFEPRSL 575
Query: 510 LSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVAD 569
++S + VT+ LE+ + + A+ L R L V + M L G FDVP +
Sbjct: 576 ITSDKGFVTMTLESLEEYRMSAVAWKELNRKLSSNAVSQITRMCLLKGIWGVCFDVPTTE 635
Query: 570 LDLFRSGADNAANVSLEVLKQLPPLQE 596
+ ++ ++ + L V +LP ++E
Sbjct: 636 SERLQAEWHDSDWI-LSVPAKLPEIEE 661
>gi|80477520|gb|AAI08449.1| LOC398188 protein [Xenopus laevis]
Length = 768
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 214/561 (38%), Positives = 303/561 (54%), Gaps = 63/561 (11%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S+F IS + L++KG+ LFPIQ+ TF V G D+V +ARTG GKT +F +P++E L
Sbjct: 192 SKFPISKDTIKNLQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVERL 251
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ ++ GRAP V++L PTRELA Q+ + + L C YGG PY Q
Sbjct: 252 SEDQQPLAR----GRAPRVIILTPTRELAIQITNE--LRSMTKKLKVACFYGGTPYQQQV 305
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---K 288
F +K GID ++GTPGRI+D ++ +DL+ LK VLDE D M MGF E VE IL K
Sbjct: 306 FAIKDGIDFLVGTPGRIRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYK 365
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
+ QTLLFSAT P W+ +++ K+++ + +DLVG+ KA+ V H+ + C+ S
Sbjct: 366 PDPEENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQ 425
Query: 349 RSQVIPDIIRCYS-SGGRTIIFTETKESASQLA----DLLPGARALHGDIQQSQREVTLA 403
++ V+ DI++ YS S G+TIIF ++K A +L+ L A+ LHGD+QQ +REV L
Sbjct: 426 KAAVLGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLK 485
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG--------- 454
GFR G F L+ATNVAARGLDI +V L++ P++ +AY+HRSGRTGRAG
Sbjct: 486 GFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLY 545
Query: 455 -----------------------------------VEAAETITQVSDSVIPAFKSAAEEL 479
+A +++ V VI FK A+EL
Sbjct: 546 EPWEKHYLRNVERSTGITFKRVGIPSLMNVAKSSSADAIKSLDTVPADVIEHFKEYAQEL 605
Query: 480 LNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRR 539
+ G A A ALA G T IK RSLL+ ++T+ L++ PI+ S+A+ ++
Sbjct: 606 IEKKGALTAL--AAALAHISGATSIKQRSLLNMEAGYMTITLKSSVPIHNLSYAWRSIKE 663
Query: 540 FLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQ 599
L E+ + M L D G FDV DL + + + +LP +QE E+
Sbjct: 664 QLGEDVDSKIHRMCLLKDSMGVCFDVRSEDLQSMQESWSDTRRWQFTITTELPEIQESER 723
Query: 600 SRGRFGGGGRGGFGGRGGNRF 620
S F G FGGRG F
Sbjct: 724 S---FDGPRNRSFGGRGRRPF 741
>gi|148224339|ref|NP_001082033.1| nucleolar RNA helicase 2 [Xenopus laevis]
gi|10764780|gb|AAG22818.1|AF302422_1 RNA helicase II/Gu [Xenopus laevis]
Length = 800
Score = 351 bits (900), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 212/561 (37%), Positives = 303/561 (54%), Gaps = 63/561 (11%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S+F IS + ++KG+ LFPIQ+ TF V G D+V +ARTG GKT +F +P++E L
Sbjct: 224 SKFPISKDTIKNXQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVERL 283
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ ++ GRAP V++L PTRELA Q+ + + L C YGG PY Q
Sbjct: 284 SEDQQPLAR----GRAPRVIILTPTRELAIQITNE--LRSMTKKLKVACFYGGTPYQQQV 337
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---K 288
F +K GID ++GTPGRI+D ++ +DL++LK VLDE D M +GF E VE IL K
Sbjct: 338 FAIKDGIDFLVGTPGRIRDLVQNYRLDLTALKHVVLDEVDMMFDVGFSEQVEEILSVRYK 397
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
+ QTLLFSAT P W+ +++ K+++ + +DLVG+ KA+ V H+ + C+ S
Sbjct: 398 PDPEENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQ 457
Query: 349 RSQVIPDIIRCYS-SGGRTIIFTETKESASQLA----DLLPGARALHGDIQQSQREVTLA 403
++ V+ DI++ YS S G+TIIF ++K A +L+ L A+ LHGD+QQ +REV L
Sbjct: 458 KAAVLGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLK 517
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG--------- 454
GFR G F L+ATNVAARGLDI +V L++ P++ +AY+HRSGRTGRAG
Sbjct: 518 GFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLY 577
Query: 455 -----------------------------------VEAAETITQVSDSVIPAFKSAAEEL 479
+A +++ V VI FK A+EL
Sbjct: 578 EPWEKHYLRNVERSTGITFKRVGIPSLMNVAKSSSADAIKSLDTVPADVIEHFKEYAQEL 637
Query: 480 LNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRR 539
+ G A A ALA G T IK RSLL+ ++T+ L++ PI+ S+A+ ++
Sbjct: 638 IEKKGALTAL--AAALAHISGATSIKQRSLLNMEAGYMTITLKSSVPIHNLSYAWRSIKE 695
Query: 540 FLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQ 599
L E+ + M L D G FDV DL + + + +LP +QE E+
Sbjct: 696 QLGEDVDSKIHRMCLLKDSMGVCFDVRSEDLQSMQESWSDTRRWQFTITTELPEIQESER 755
Query: 600 SRGRFGGGGRGGFGGRGGNRF 620
S F G FGGRG F
Sbjct: 756 S---FDGPRNRSFGGRGRRPF 773
>gi|403335713|gb|EJY67037.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 972
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 212/551 (38%), Positives = 304/551 (55%), Gaps = 75/551 (13%)
Query: 118 VPLR--EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+P R +KLKS+GI SLFPIQ TF + + D++ R TG GKTLAF LPI+E L
Sbjct: 161 IPQRTVDKLKSRGIISLFPIQQQTFYPIYNREDVIARDLTGSGKTLAFGLPIIEYL---- 216
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ +K G + ++L L PTRELA QV + + G + S +YGG P Q L
Sbjct: 217 -RKNKFLGQRKVQAIL-LAPTRELAIQVQNELSQLKHGDMEFKSITVYGGVPIDDQARDL 274
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K G+D+++GT GR+KDHIERGNID SS+K VLDEAD ML +GF +D+E I+ ++ +
Sbjct: 275 KYGVDIIVGTAGRVKDHIERGNIDFSSVKSFVLDEADRMLDLGFKDDIEWIMSQITRQCQ 334
Query: 295 --VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
VQ LFSAT+P WVK+++ ++LK + + +DL N K + +V+H+ + C +
Sbjct: 335 FDVQKCLFSATIPLWVKNVARQYLKPNYRLVDLAQNLTNKTAKSVQHLSICCPEQNKMST 394
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGK 409
+ D++ CY GR I+FT+TK A+ L + +HGDI Q+QREVTL FR GK
Sbjct: 395 LADLLICYGGDGRAIVFTQTKVDANALILTDKIKQDIEVMHGDIPQNQREVTLKRFRDGK 454
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA---------------- 453
F LVAT+VA+RGLDI +V L+IQ EPP +VE YIHRSGRT RA
Sbjct: 455 FSVLVATDVASRGLDIPNVDLVIQVEPPNEVETYIHRSGRTARAGKMGVCITFYTKKSQY 514
Query: 454 ----------------GVEAAETIT------------QVSDSVIPAFKSAAEELLNNSGL 485
G+ +A+ + QV+D VIP F AA++L++ G
Sbjct: 515 MIQQIESQAGIKFKNIGIPSAQDVIRASSKLMLKNLDQVNDQVIPYFTEAAKDLIDMCGG 574
Query: 486 SAAELLAKALAKAVGY--TEIKSRSLLSSLEDHVTVVL--------EAGKPIYTP-SFAF 534
+ + L KALA GY T ++RSL++ E +T+ L + K P +
Sbjct: 575 NQEKALCKALAYISGYYKTAFQTRSLITGQERQITLELKLIQVPESKTAKTWRDPLTNGV 634
Query: 535 GVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAA----NVSLEVLK- 589
+ +++ PE+ V+ ++GM AD G VFD+ D F A + A + ++ K
Sbjct: 635 QIFKKYFPEKIVDHLRGMKAKADRTGIVFDIDENQADRFIEIASHLAETDSTIDFQIFKC 694
Query: 590 -QLPPLQEREQ 599
LP L + EQ
Sbjct: 695 LALPELLDEEQ 705
>gi|113931550|ref|NP_001039224.1| nucleolar RNA helicase 2 [Xenopus (Silurana) tropicalis]
gi|89272468|emb|CAJ82454.1| novel GUCT (NUC152) domain containing DEAD/DEAH box helicase
[Xenopus (Silurana) tropicalis]
Length = 755
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 219/583 (37%), Positives = 311/583 (53%), Gaps = 69/583 (11%)
Query: 79 SEKEKKKKKKAKVEPEAGVEEQERG---ESEHPNA------VSRFRISVPLREKLKSKGI 129
+E KK+KK +E A E +E+ E E N S+F IS + L++KG+
Sbjct: 140 NEPTPKKRKKDTMEITASEECEEKQLTKEEEEINQEKIDGDFSKFPISKDTIKNLQAKGV 199
Query: 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189
LFPIQ+ TF G D+V +ARTG GKT +F +P++E L ++ GRAP
Sbjct: 200 SYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVERLNEDQQPLAR----GRAPR 255
Query: 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK 249
V++L PTRELA Q+ + + L CC YGG PY Q F +K+G D ++GTPGR++
Sbjct: 256 VIILTPTRELAIQITNE--IRSITKKLKVCCFYGGTPYQQQVFSIKEGFDFLVGTPGRVR 313
Query: 250 DHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPS 306
D ++ +DL+ LK VLDE D M MGF E VE IL K + QTLLFSAT P
Sbjct: 314 DLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDPEENPQTLLFSATCPD 373
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGR 365
W+ +++ K++K + IDLVG+ KA+ V H+ + C+ S ++ V+ DI++ YS S G+
Sbjct: 374 WMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKAAVLGDIVQVYSGSHGK 433
Query: 366 TIIFTETKESASQLA----DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
+IIF ++K A +LA L A+ LHGD+QQ +REV L GFR G F LVATNVAAR
Sbjct: 434 SIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFRQGSFEVLVATNVAAR 493
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG--------------------------- 454
GLDI +V L++ P++ +AY+HRSGRTGRAG
Sbjct: 494 GLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGICISLYEPRERHYLRNVERSTGIT 553
Query: 455 -----------------VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAK 497
+A +++ V VI FK A+EL+ G A A ALA
Sbjct: 554 FKRVGIPSLLNVAKSSSADAIKSLDSVPADVIEHFKEYAQELIEKKGALTAL--AAALAH 611
Query: 498 AVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD 557
G T IK RSLL+ +VT+ L++ I+ S+A+ ++ L E+ + M L D
Sbjct: 612 ISGATSIKQRSLLNMEAGYVTITLKSSVQIHNLSYAWRSIKEQLGEDIDSKIHRMCLLKD 671
Query: 558 GNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQS 600
G FDV +L + G + V +LP +QE E++
Sbjct: 672 SMGVCFDVRSENLQSMQEGWKDTRRWQFTVATELPAIQESERN 714
>gi|163916596|gb|AAI57756.1| LOC734085 protein [Xenopus (Silurana) tropicalis]
Length = 758
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 219/583 (37%), Positives = 311/583 (53%), Gaps = 69/583 (11%)
Query: 79 SEKEKKKKKKAKVEPEAGVEEQERG---ESEHPNA------VSRFRISVPLREKLKSKGI 129
+E KK+KK +E A E +E+ E E N S+F IS + L++KG+
Sbjct: 140 NEPTPKKRKKDTMEITASEECEEKQLTKEEEEINQEKIDGDFSKFPISKDTIKNLQAKGV 199
Query: 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189
LFPIQ+ TF G D+V +ARTG GKT +F +P++E L ++ GRAP
Sbjct: 200 SYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVERLNEDQQPLAR----GRAPR 255
Query: 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK 249
V++L PTRELA Q+ + + L CC YGG PY Q F +K+G D ++GTPGR++
Sbjct: 256 VIILTPTRELAIQITNE--IRSITKKLKVCCFYGGTPYQQQVFSIKEGFDFLVGTPGRVR 313
Query: 250 DHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPS 306
D ++ +DL+ LK VLDE D M MGF E VE IL K + QTLLFSAT P
Sbjct: 314 DLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDPEENPQTLLFSATCPD 373
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGR 365
W+ +++ K++K + IDLVG+ KA+ V H+ + C+ S ++ V+ DI++ YS S G+
Sbjct: 374 WMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKAAVLGDIVQVYSGSHGK 433
Query: 366 TIIFTETKESASQLA----DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
+IIF ++K A +LA L A+ LHGD+QQ +REV L GFR G F LVATNVAAR
Sbjct: 434 SIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFRQGSFEVLVATNVAAR 493
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG--------------------------- 454
GLDI +V L++ P++ +AY+HRSGRTGRAG
Sbjct: 494 GLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGICISLYEPRERHYLRNVERSTGIT 553
Query: 455 -----------------VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAK 497
+A +++ V VI FK A+EL+ G A A ALA
Sbjct: 554 FKRVGIPSLLNVAKSSSADAIKSLDSVPADVIEHFKEYAQELIEKKGALTAL--AAALAH 611
Query: 498 AVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD 557
G T IK RSLL+ +VT+ L++ I+ S+A+ ++ L E+ + M L D
Sbjct: 612 ISGATSIKQRSLLNMEAGYVTITLKSSVQIHNLSYAWRSIKEQLGEDIDSKIHRMCLLKD 671
Query: 558 GNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQS 600
G FDV +L + G + V +LP +QE E++
Sbjct: 672 SMGVCFDVRSENLQSMQEGWKDTRRWQFTVATELPAIQESERN 714
>gi|401414811|ref|XP_003871902.1| putative nucleolar RNA helicase II [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488123|emb|CBZ23369.1| putative nucleolar RNA helicase II [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 684
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 219/600 (36%), Positives = 325/600 (54%), Gaps = 86/600 (14%)
Query: 79 SEKEKKKKKKAKVEPEAGVEEQERGESEHPN--------AVSRFRISVPLREKLKSKGIE 130
+EK K+ + +KV + E + E PN S F ++ + + L+S+GIE
Sbjct: 48 AEKRKRPEGNSKVAATSATTPAEEKDEEVPNNGCAATARPFSEFEMNPTVVKALQSRGIE 107
Query: 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV 190
S+FP+QA+TF+ ++ +D++ +ARTG GKTLAF +PI+E L P+ + GR P+
Sbjct: 108 SMFPVQALTFNAIMRSTDVLVQARTGSGKTLAFGIPIVERLLKLPSHLIR----GRGPAA 163
Query: 191 LVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK 249
++ PTRELA QV DV G + GL LYGG Y QE L+ G+D+V+ TPGR K
Sbjct: 164 VIFCPTRELAIQVQ---DVLCGISCGLVVTALYGGVAYANQERVLRSGVDIVVATPGRAK 220
Query: 250 DHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV--------QTLLFS 301
D +E+G + + LDEAD ML +GF +D+EL+L +V + N QTLLFS
Sbjct: 221 DFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSVGAEKPVHQTLLFS 280
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P WV S F+ DK+ ID+VG E ++ ++ ++ C+ S S ++ D+I+ YS
Sbjct: 281 ATVPEWVHTCS--FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYS 338
Query: 362 -SGGRTIIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
+ GRT++FT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT+V
Sbjct: 339 GAHGRTLVFTNTKKDCHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDV 398
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG----------------VEAAETIT 462
AARGLD+ V L+IQC PP D++A+IHR+GRTGRAG VE E
Sbjct: 399 AARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHA 458
Query: 463 QVSDSVIPA----------------------------FKSAAEELLNNSGLSAAELLAKA 494
++ V+PA F A ELL ++ E+LA A
Sbjct: 459 KMKFDVLPAPTREEILKAVARDAAEDLARVERRATNLFMDQAAELLKDA--DPVEILASA 516
Query: 495 LAKAVGYT-EIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMA 553
LA GYT I +R L++ +VTV + + +P+ P + +LR L ++ + +
Sbjct: 517 LAVMSGYTSNITTRGLITGTPGYVTVQMTSDRPLPVPVYC-SILRNNLGDDMFMRCRDIT 575
Query: 554 LTADGNGAVFDVPVADLDLF--RSGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRGG 611
L D G VFDV L+ F R + ++ + ++ LPP+ RE + R GGRGG
Sbjct: 576 LLQDDPGCVFDV----LEQFAERVMSTPMRGITFQRIETLPPIIARELNSSR---GGRGG 628
>gi|118358020|ref|XP_001012258.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|89294025|gb|EAR92013.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 744
Score = 348 bits (893), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 219/596 (36%), Positives = 312/596 (52%), Gaps = 76/596 (12%)
Query: 79 SEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAM 138
SE E + KK ++E + + + +S++ + E L +GI LFPIQ
Sbjct: 49 SESEDEDTKKNQIEAK-----------HNQDNMSKYIKNAKTIEILNKRGITYLFPIQEH 97
Query: 139 TFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTR 197
F + G DL+G+ RTG GKTL F LP++E L N G + KK + P +LV++PTR
Sbjct: 98 CFQAIQAGKDLIGKDRTGSGKTLGFSLPLIEKLRNEGNFTSIKKK---QTPYMLVVVPTR 154
Query: 198 ELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN 256
EL QV + + +YGG Q +++ G+++V+GTPGRI D ERG
Sbjct: 155 ELCIQVANEINTLKHTDNEFRVLQIYGGVDVREQANQIRDGVEIVVGTPGRIIDQYERGA 214
Query: 257 IDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED---ANKVQTLLFSATLPSWVKHIST 313
+ S+ VLDEAD+ML GF ED+E I G +++ + Q LLFSAT+PSWV I+
Sbjct: 215 LMFHSIIATVLDEADQMLNFGFQEDIEKIFGFIKNDKGEERPQNLLFSATMPSWVHDIAR 274
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG--RTIIFTE 371
KFL+ D+ IDLV N K S +V H+ + C R++ I D+I CY G R IIF E
Sbjct: 275 KFLREDRVLIDLVKNLGNKTSQDVTHLAINCPYFQRTEAIGDVILCYGGGAHSRVIIFCE 334
Query: 372 TKESASQL---ADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
TK A+++ A++ + LHGDI Q QRE+T GFR GKF LVATNVAARGLDI +V
Sbjct: 335 TKNEANEIMLKANIKQDVQVLHGDIPQKQREITFQGFREGKFKCLVATNVAARGLDIPEV 394
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAG----------------VEAAE------------- 459
LI+Q EPP++++AYIHRSGRTGRAG +E E
Sbjct: 395 DLIVQLEPPKELDAYIHRSGRTGRAGKKGVCITFYTKKQQSLIERIEKKCHIKMQKVGAP 454
Query: 460 ---------------TITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTE- 503
+ V+ +V+ FK + +L+ G E L +A+A G+TE
Sbjct: 455 QPADLIRASQNDIKKNLMSVNRTVLGIFKEVSVDLIQEFG--PEEALERAIAFISGFTEK 512
Query: 504 IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVF 563
+K RSLL LE +VT ++ + +G ++ P E + +KGM AD GAVF
Sbjct: 513 MKQRSLLCCLEGYVTYIVRTPSEFRGLGYIWGWVKNNFPAECTDRIKGMKKFADNKGAVF 572
Query: 564 DVPVADLDLFRSGADNAAN-----VSLEVLKQLPPLQEREQSRGRFGGGGRGGFGG 614
DV D ++F + + A + LEV +P ++E + GG + G
Sbjct: 573 DVAEEDKEVFDAYINELAEGTKQGLELEVATTIPEIEEEGGYSQGYNGGNKSAPNG 628
>gi|71406310|ref|XP_805705.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
gi|70869212|gb|EAN83854.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 660
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 224/601 (37%), Positives = 320/601 (53%), Gaps = 71/601 (11%)
Query: 76 NLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPI 135
N +EK + + + G E G + S F + E LKS+GI +LFP+
Sbjct: 17 NPSAEKRARYETNESDDKSGGGEAPNNGSALTGRPFSDFDLLPNTVEALKSQGITALFPV 76
Query: 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195
QA+T++ ++ GS+++ +ARTG GKTLAF +PILE L TK++++ GR P+ ++ P
Sbjct: 77 QALTYEAIMKGSNVLVQARTGSGKTLAFGIPILEKLAR-TTKSNEQPVRGRGPAAVIFCP 135
Query: 196 TRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
TRELA QV DV G + G LYGG Y QE L G+DVV+ TPGR KD +E+
Sbjct: 136 TRELAIQVR---DVIAGISKGFVVTALYGGVAYSTQERALYSGVDVVVATPGRAKDFLEK 192
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN-------KVQTLLFSATLPSW 307
+ +K LDEAD ML +GF +D+EL+L KV + N QTLLFSAT+P W
Sbjct: 193 RTLCFDRVKVVCLDEADHMLDIGFKDDIELLLQKVAEQNGSTEGNPNHQTLLFSATVPEW 252
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRT 366
V S F+ +K+ ID+VG M+A+ ++ C S S ++ D+++ YS GRT
Sbjct: 253 VHTCS--FIPRNKEFIDMVGQGTMRAANTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRT 310
Query: 367 IIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
++FT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT+VAARGLD
Sbjct: 311 LVFTNTKKECHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLD 370
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------------------------ 454
+ V L+IQC PP D++A+IHR+GRTGRAG
Sbjct: 371 LPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKIKFEV 430
Query: 455 --------------VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVG 500
+AAE + +V S F A ELL ++ A E+LA A+A G
Sbjct: 431 LPAPTRDEILRAVARDAAEDLARVERSATNLFMEQAAELLKDA--DATEILASAIAVMSG 488
Query: 501 YT-EIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGN 559
YT I R L++ + VT+ + + + P F +LR L + + + L +
Sbjct: 489 YTSSITRRGLITGAKGSVTIQMLGQRTLPIPVFC-SILRNSLGDNLFTRCRDITLLQESP 547
Query: 560 GAVFDVP--VADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRGGFGGRGG 617
G VFDVP VAD L + + L V++ LPP+ RE + G GGGG+ F GRGG
Sbjct: 548 GCVFDVPEEVADQIL----SAPIRGMQLGVIETLPPIIARELNSGNRGGGGQSYFNGRGG 603
Query: 618 N 618
+
Sbjct: 604 S 604
>gi|444725163|gb|ELW65741.1| Nucleolar RNA helicase 2 [Tupaia chinensis]
Length = 1339
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 215/494 (43%), Positives = 290/494 (58%), Gaps = 38/494 (7%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
EQE + A S F IS + LK +G+ LFPIQA TF V G DL+ +ARTG G
Sbjct: 811 EQEISVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTG 870
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLT 217
KT +F +P++E L G + K+ GR+P VLVL PTRELA QV DF D+ L+
Sbjct: 871 KTFSFAIPLIEKL-QGEMQDKKR---GRSPQVLVLTPTRELASQVSRDFSDI---TKKLS 923
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MG
Sbjct: 924 VACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMG 983
Query: 278 FVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS 334
F + VE IL K + + QTLLFSAT P WV +++ K++K + +DL+G + K +
Sbjct: 984 FADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKPSYEQVDLIGKKTQKTA 1043
Query: 335 TNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD---LLPGARALH 390
V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LH
Sbjct: 1044 ITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNTSIKQDAQSLH 1103
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++QC PP+ + +
Sbjct: 1104 GDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQCSPPKGI--------KF 1155
Query: 451 GRAGVEAAETITQVS--------DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKA 498
R GV +A I + S DSV P FK +AE+L+ G A E LA ALA
Sbjct: 1156 KRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHI 1213
Query: 499 VGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMA-LTAD 557
G T + RSL++S VT++L + S+A+ L+ L E+ VKGM L
Sbjct: 1214 SGATSVDQRSLINSNVGFVTMILRCSIEMPNISYAWKELKEQLGEDVDSKVKGMVFLKGK 1273
Query: 558 GNGAVFDVPVADLD 571
N + P DL+
Sbjct: 1274 LNNQRWKDPGKDLE 1287
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 147/354 (41%), Positives = 206/354 (58%), Gaps = 17/354 (4%)
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVE 290
++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+ K +
Sbjct: 156 IRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTD 215
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+ QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C S R
Sbjct: 216 SEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRP 275
Query: 351 QVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFR 406
VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+TL GFR
Sbjct: 276 AVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFR 335
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA------GVEAAET 460
G F LVATNVAARGLDI +V L+IQ PP+ + R G ++A +
Sbjct: 336 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQGI--TFKRVGVPSTMDLVKSKSMDAIRS 393
Query: 461 ITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVV 520
+ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S + VT+
Sbjct: 394 LASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFVTMT 451
Query: 521 LEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFR 574
LE+ + I A L R L V + M L VF + DL L R
Sbjct: 452 LESPEEIQDVGCARKELNRKLSSNAVSQITRMCLLKGNMWQVFAIHHVDLSLLR 505
>gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis]
Length = 727
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 222/617 (35%), Positives = 327/617 (52%), Gaps = 79/617 (12%)
Query: 54 KESEIEEEEERSE---------------TSSELGEPVNLKSEKEKKKKKKAKVEPEAGV- 97
++S+ +EE E+SE +S+ EP K + + + AK E E V
Sbjct: 75 EDSDTQEEAEQSEPQTNGVKSIKKSKKNITSDDNEPAPKKRKTDTTEITTAK-ECEEKVL 133
Query: 98 --EEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRART 155
EEQE + + S+F +S + L++KG+ LFPIQ+ TF G D+V +ART
Sbjct: 134 TKEEQEINQEKIDGDFSKFPLSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQART 193
Query: 156 GQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG 215
G GKT +F +P++E L ++ GRAP V++L PTRELA Q+ + +
Sbjct: 194 GTGKTFSFAIPLVEKLNEDQQPLAR----GRAPRVIILTPTRELAIQITNE--IRSITKK 247
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L C YGG PY Q F +K GID ++GTPGR++D ++ +DL++LK VLDE D M
Sbjct: 248 LKVSCFYGGTPYQQQVFAIKDGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFD 307
Query: 276 MGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMK 332
MGF E VE IL K + QTLLFSAT P W+ +++ K+++ + IDL+G+ K
Sbjct: 308 MGFSEQVEEILSVRYKADPEENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQK 367
Query: 333 ASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA----DLLPGAR 387
A+T V H+ + C+ S ++ V+ D+++ YS S G+TIIF ++K A LA L A+
Sbjct: 368 AATTVEHLAIECTRSQKAAVLGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAK 427
Query: 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRS 447
+LHGD+QQ +REV L GFR G F L+ATNVAARGLDI +V L++ P++ +AY+HRS
Sbjct: 428 SLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRS 487
Query: 448 GRTGRAG--------------------------------------------VEAAETITQ 463
GRTGRAG +A +++
Sbjct: 488 GRTGRAGRTGVCISLYEPWERHYLRNVERSTGITFKRVGVPSLLNVAKSSSADAIKSLDT 547
Query: 464 VSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEA 523
V VI FK A+EL+ G A A ALA G T IK RSLL+ VT+ L++
Sbjct: 548 VPADVIEHFKEYAQELIEQKGALTAI--AAALAHISGATSIKQRSLLNMEAGCVTITLKS 605
Query: 524 GKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANV 583
PI++ S+A+ ++ L ++ + M L D G FDV +L+ + +
Sbjct: 606 SVPIHSLSYAWQSIKEQLGDDVDSKIHRMCLLKDSMGVCFDVRSENLESMQERWTDTKQW 665
Query: 584 SLEVLKQLPPLQEREQS 600
V +LP +QE E++
Sbjct: 666 QFTVATELPAIQESERN 682
>gi|398010006|ref|XP_003858201.1| nucleolar RNA helicase II, putative [Leishmania donovani]
gi|322496407|emb|CBZ31477.1| nucleolar RNA helicase II, putative [Leishmania donovani]
Length = 678
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 218/600 (36%), Positives = 324/600 (54%), Gaps = 86/600 (14%)
Query: 77 LKSEKEKKKKKKAKVEPEAGVEEQERGESEHPN--------AVSRFRISVPLREKLKSKG 128
+ +EK K+ + KV + E + E PN S F ++ + + L+S+G
Sbjct: 46 VAAEKRKRTEGSCKVAVTSATAPAEEKDEEVPNNGCAATARPFSEFEMNPIVVKALQSRG 105
Query: 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188
IES+FP+QA+TF+ ++ +D++ +ARTG GKTLAF +PI+E L P+ ++ GR P
Sbjct: 106 IESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERLLKLPSHFTR----GRGP 161
Query: 189 SVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
+ ++ PTRELA QV DV G + GL LYGG Y QE L+ G+D+V+ TPGR
Sbjct: 162 AAVIFCPTRELAIQVQ---DVLCGISCGLVVTALYGGVAYANQERVLRSGVDIVVATPGR 218
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV--------QTLL 299
KD +E+G + + LDEAD ML +GF +D+EL+L +V + N QTLL
Sbjct: 219 AKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSVGAERPVHQTLL 278
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P WV S F+ DK+ ID+VG E ++ ++ ++ C+ S S ++ D+I+
Sbjct: 279 FSATVPEWVHTCS--FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEISSMLADLIKV 336
Query: 360 YS-SGGRTIIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
YS + GRT++FT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT
Sbjct: 337 YSGAHGRTLVFTNTKKDCHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIAT 396
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG----------------VEAAET 460
+VAARGLD+ V L+IQC PP D++A+IHR+GRTGRAG VE E
Sbjct: 397 DVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIER 456
Query: 461 ITQVSDSVIPA----------------------------FKSAAEELLNNSGLSAAELLA 492
++ V+PA F A ELL ++ E+LA
Sbjct: 457 HAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMDQAAELLKDA--DPVEILA 514
Query: 493 KALAKAVGYT-EIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKG 551
ALA GYT I +R L++ +VTV + + +P+ P + +LR L +E +
Sbjct: 515 SALAVMSGYTSNITTRGLITGTPGYVTVQMTSDRPLPVPVYC-SILRNNLGDETFMRCRD 573
Query: 552 MALTADGNGAVFDVPVADLDLF--RSGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGR 609
+ L D G VFDV L+ F R + ++ + ++ LPP+ RE + R GGR
Sbjct: 574 ITLLQDDPGCVFDV----LEQFAERVMSTPMRGITFQRIETLPPIIARELNSSR---GGR 626
>gi|414886327|tpg|DAA62341.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 317
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 189/307 (61%), Positives = 228/307 (74%), Gaps = 44/307 (14%)
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373
+FLK D+KT+DLVGNEK+KAS +V+H+ LPC+ +AR+QVIPDIIRCYS GGRTIIFTETK
Sbjct: 2 RFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARAQVIPDIIRCYSHGGRTIIFTETK 61
Query: 374 ESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ 433
+SAS+L+ L+ G+RALHGD+ Q+QREV LAGFRSGKF LVATNVAARGLDINDVQLIIQ
Sbjct: 62 DSASELSGLIHGSRALHGDVAQAQREVILAGFRSGKFQVLVATNVAARGLDINDVQLIIQ 121
Query: 434 CEPPRDVEAYIHRSGRTGR----------------------------------------- 452
CEPPRDVEAYIHRSGRTGR
Sbjct: 122 CEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRYKHSVSRLERESGVKFEHISAPQPTDV 181
Query: 453 ---AGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSL 509
AG EAA+ I VSDSVIP F+ AE+LL++S LSAA+LLAKALAKAVGYT+IK RSL
Sbjct: 182 AQSAGSEAADAIASVSDSVIPIFRQQAEQLLSSSSLSAADLLAKALAKAVGYTDIKKRSL 241
Query: 510 LSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVAD 569
LSSLED+ T+ L+ G+P+++P FAF +L+RF+PE+K+ VKG LTADG G VFDVP AD
Sbjct: 242 LSSLEDYSTLHLQTGRPMWSPGFAFTILKRFMPEDKLADVKGATLTADGTGVVFDVPAAD 301
Query: 570 LDLFRSG 576
++ + G
Sbjct: 302 VEDYIQG 308
>gi|148700135|gb|EDL32082.1| mCG141508, isoform CRA_a [Mus musculus]
Length = 624
Score = 344 bits (883), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 179/353 (50%), Positives = 233/353 (66%), Gaps = 15/353 (4%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 70 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 129
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 130 RLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 182
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 183 SQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 242
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 243 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 302
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 303 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 362
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 363 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAG 415
>gi|148700137|gb|EDL32084.1| mCG141508, isoform CRA_c [Mus musculus]
Length = 689
Score = 344 bits (883), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 179/353 (50%), Positives = 233/353 (66%), Gaps = 15/353 (4%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 194
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 195 RLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 247
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 248 SQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 307
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 308 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 367
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 368 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 427
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 428 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAG 480
>gi|339896857|ref|XP_001462984.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
gi|321398908|emb|CAM65330.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
Length = 678
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 218/597 (36%), Positives = 322/597 (53%), Gaps = 86/597 (14%)
Query: 80 EKEKKKKKKAKVEPEAGVEEQERGESEHPN--------AVSRFRISVPLREKLKSKGIES 131
EK K+ + KV + E + E PN S F ++ + + L+S+GIES
Sbjct: 49 EKRKRTEGSCKVAVTSATAPAEEKDEEVPNNGCAATARPFSEFEMNPIVVKALQSRGIES 108
Query: 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191
+FP+QA+TF+ ++ +D++ +ARTG GKTLAF +PI+E L P+ ++ GR P+ +
Sbjct: 109 MFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERLLKLPSHFTR----GRGPAAV 164
Query: 192 VLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKD 250
+ PTRELA QV DV G + GL LYGG Y QE L+ G+D+V+ TPGR KD
Sbjct: 165 IFCPTRELAIQVQ---DVLCGISCGLVVTALYGGVAYANQERVLRSGVDIVVATPGRAKD 221
Query: 251 HIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV--------QTLLFSA 302
+E+G + + LDEAD ML +GF +D+EL+L +V + N QTLLFSA
Sbjct: 222 FLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSVGAERPVHQTLLFSA 281
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS- 361
T+P WV S F+ DK+ ID+VG E ++ ++ ++ C+ S S ++ D+I+ YS
Sbjct: 282 TVPEWVHTCS--FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYSG 339
Query: 362 SGGRTIIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
+ GRT++FT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT+VA
Sbjct: 340 AHGRTLVFTNTKKDCHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVA 399
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG----------------VEAAETITQ 463
ARGLD+ V L+IQC PP D++A+IHR+GRTGRAG VE E +
Sbjct: 400 ARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHAK 459
Query: 464 VSDSVIPA----------------------------FKSAAEELLNNSGLSAAELLAKAL 495
+ V+PA F A ELL ++ E+LA AL
Sbjct: 460 MKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMDQAAELLKDA--DPVEILASAL 517
Query: 496 AKAVGYT-EIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMAL 554
A GYT I +R L++ +VTV + + +P+ P + +LR L +E + + L
Sbjct: 518 AVMSGYTSNITTRGLITGTPGYVTVQMTSDRPLPVPVYC-SILRNNLGDETFMRCRDITL 576
Query: 555 TADGNGAVFDVPVADLDLF--RSGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGR 609
D G VFDV L+ F R + ++ + ++ LPP+ RE + R GGR
Sbjct: 577 LQDDPGCVFDV----LEQFAERVMSTPMRGITFQRIETLPPIIARELNSSR---GGR 626
>gi|299115354|emb|CBN74178.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 923
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 206/532 (38%), Positives = 295/532 (55%), Gaps = 66/532 (12%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK++GIE P+QA+T+D +L G D++G++RTG GKT+AF LP+++ L ++T
Sbjct: 271 LKARGIEKFTPVQAITYDHILSGRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDHQQRTY 330
Query: 184 Y-GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
GR+P LV+ PTRELA+QV+ + + G GL + +GGA Y Q L G+D+++
Sbjct: 331 QRGRSPRFLVVCPTRELARQVYGELETLGSTFGLKADVFHGGAAYGPQMRSLSDGLDILV 390
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
TPGRI DH++RG +DLS ++ VLDEADEML MGF +D+E I V D + Q LLFSA
Sbjct: 391 ATPGRIMDHLQRGALDLSDVRHAVLDEADEMLNMGFADDIETIFSYV-DVKECQVLLFSA 449
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+PSWV++I+ K+ ++ T+D VG K +T V+H+ + SS RS ++ DII Y
Sbjct: 450 TVPSWVRNIANKY-TANPLTVDAVGKHVNKLATTVKHLSIEVSSRHRSSMLEDIITYYGK 508
Query: 363 GGRTIIFTETKESASQLAD----LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+FT +K +LAD ++ LHGDI Q QR+ T+ FR+ F LVAT+V
Sbjct: 509 GSHAIVFTNSKAECDELADGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDV 568
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR-------------------------- 452
AARG+D++D+ L++Q PPRD ++Y+HRSGRTGR
Sbjct: 569 AARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGV 628
Query: 453 --------------------AGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAE-LL 491
AG A E I VSD ++ F+ +A+ELL E LL
Sbjct: 629 GQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDDMVDFFRESAQELLAEEESEDKELLL 688
Query: 492 AKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPS--FAFGVLRR---FLPEEKV 546
AK LA T + RS+L+ D VTV + A + + + FA G L R F P
Sbjct: 689 AKCLAAIARKTHVTRRSMLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGRAAGFEP---- 744
Query: 547 ELVKGMALTADGNGAVFDVPV--ADLDLFRSGADNAANVSLEVLKQLPPLQE 596
+V +A+ D AVFD+ AD + S N ++ ++ LP LQE
Sbjct: 745 -MVGRIAIAKDPTTAVFDMSTEAADQLVKFSKEQNLESIEFKMCPVLPVLQE 795
>gi|149038674|gb|EDL92963.1| rCG22084, isoform CRA_b [Rattus norvegicus]
Length = 689
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 179/353 (50%), Positives = 232/353 (65%), Gaps = 15/353 (4%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 194
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L K R+P VLVL PTRELA QV +DF D+ L C YGG Y
Sbjct: 195 RLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLNVACFYGGTSYQ 247
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 248 SQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 307
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 308 SYKSDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 367
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 368 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 427
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 428 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAG 480
>gi|407835252|gb|EKF99205.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 642
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 238/637 (37%), Positives = 339/637 (53%), Gaps = 77/637 (12%)
Query: 76 NLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPI 135
N +EK + + + G E G + S F + E LKS+GI +LFP+
Sbjct: 17 NPSAEKRARYETHESDDKSGGGEAPNNGSALAGRPFSDFDLLPNTVEALKSQGITALFPV 76
Query: 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195
QA+T++ ++ GS+++ +ARTG GKTLAF +PI+E L TK++++ GR P+ ++ P
Sbjct: 77 QALTYEAIMKGSNVLVQARTGSGKTLAFGIPIVEKLAR-MTKSNEQPVRGRGPAAVIFCP 135
Query: 196 TRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
TRELA QV DV G + G LYGG Y QE L G+DVV+ TPGR KD +E+
Sbjct: 136 TRELAIQVR---DVIAGISKGFVVTALYGGVAYSTQERALYSGVDVVVATPGRAKDFLEK 192
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN-------KVQTLLFSATLPSW 307
+ +K LDEAD ML +GF +D+EL+L KV + N QTLLFSAT+P W
Sbjct: 193 RTLCFDRVKVVCLDEADHMLDIGFKDDIELLLQKVAEQNGSTEGNPTHQTLLFSATVPEW 252
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRT 366
V S F+ K+ ID+VG M+A+ ++ C S S ++ D+++ YS GRT
Sbjct: 253 VHTCS--FIPRKKEFIDMVGQGTMRAANTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRT 310
Query: 367 IIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
++FT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT+VAARGLD
Sbjct: 311 LVFTNTKKECHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLD 370
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------------------------ 454
+ V L+IQC PP D++A+IHR+GRTGRAG
Sbjct: 371 LPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKIKFEV 430
Query: 455 --------------VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVG 500
+AAE + +V S F A ELL ++ A E+LA A+A G
Sbjct: 431 LPAPTRDEILRAVARDAAEDLARVERSATNLFMDQAAELLKDA--DATEILASAIAVMSG 488
Query: 501 YT-EIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGN 559
YT I R L++ + VT+ + + + P F +LR L + + + L +
Sbjct: 489 YTSSITRRGLITGAKGSVTIQMLGQRTLPIPVFC-SILRNSLGDNLFTRCRDITLLQESP 547
Query: 560 GAVFDVP--VADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRGGFGGRGG 617
G VFDVP VAD L + + L+V++ LPP+ RE + G GGGG+G F GRGG
Sbjct: 548 GCVFDVPEEVADQIL----SAPIRGMQLDVIETLPPIIARELNSGNRGGGGQGYFNGRGG 603
Query: 618 NRFSGG--RGGGFSDRRNDRFSGGFRGS-KGRGGGNR 651
S G R GG S R++ + G+R + G GGG R
Sbjct: 604 ---SNGYYRNGGGSGYRSNGYGSGYRSNGYGSGGGRR 637
>gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis]
gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis]
Length = 759
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 220/617 (35%), Positives = 326/617 (52%), Gaps = 79/617 (12%)
Query: 54 KESEIEEEEERSE---------------TSSELGEPVNLKSEKEKKKKKKAKVEPEAGV- 97
++S+ +EE E+SE +S+ EP K + + + AK E E V
Sbjct: 107 EDSDTQEEAEQSEPQTNGVKSVKKSKKNITSDDNEPAPKKRKTDTTEITTAK-ECEEKVL 165
Query: 98 --EEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRART 155
EEQ+ + + S+F +S + L++KG+ LFPIQ+ TF G D+V +ART
Sbjct: 166 TKEEQDINQEKIDGDFSKFPLSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQART 225
Query: 156 GQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG 215
G GKT +F +P++E L ++ GRAP V++L PTRELA Q+ + +
Sbjct: 226 GTGKTFSFAIPLVEKLNEDQQPLAR----GRAPRVIILTPTRELAIQITNE--IRSITKK 279
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L C YGG PY Q F +K GID ++GTPGR++D ++ +DL++LK VLDE D M
Sbjct: 280 LKVSCFYGGTPYQQQVFAIKDGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFD 339
Query: 276 MGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMK 332
MGF E VE IL K + QTLLFSAT P W+ +++ K+++ + IDL+G+ K
Sbjct: 340 MGFSEQVEEILSVRYKADPEENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQK 399
Query: 333 ASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA----DLLPGAR 387
A+T V H+ + C+ S ++ V+ D+++ YS S G+TIIF ++K A LA L A+
Sbjct: 400 AATTVEHLAIECTRSQKAAVLGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAK 459
Query: 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRS 447
+LHGD+QQ +REV L GFR G F L+ATNVAARGLDI +V L++ P++ +AY+HRS
Sbjct: 460 SLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRS 519
Query: 448 GRTGRAG--------------------------------------------VEAAETITQ 463
GRTGRAG +A +++
Sbjct: 520 GRTGRAGRTGVCISLYEPWERHYLRNVERSTGITFKRVGVPSLLNVAKSSSADAIKSLDT 579
Query: 464 VSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEA 523
V VI FK A+EL+ G A A ALA G T IK RSLL+ T+ L++
Sbjct: 580 VPADVIEHFKEYAQELIEQKGALTAI--AAALAHISGATSIKQRSLLNMEAGCDTITLKS 637
Query: 524 GKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANV 583
PI++ S+A+ ++ L ++ + M L D G FDV +L+ + +
Sbjct: 638 SVPIHSLSYAWQSIKEQLGDDVDSKIHRMCLLKDSMGVCFDVRSENLESMQERWTDTKQW 697
Query: 584 SLEVLKQLPPLQEREQS 600
V +LP +QE E++
Sbjct: 698 QFTVATELPAIQESERN 714
>gi|157863878|ref|XP_001687490.1| putative nucleolar RNA helicase II [Leishmania major strain
Friedlin]
gi|68223701|emb|CAJ01930.1| putative nucleolar RNA helicase II [Leishmania major strain
Friedlin]
Length = 674
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 212/587 (36%), Positives = 320/587 (54%), Gaps = 83/587 (14%)
Query: 79 SEKEKKKKKKAKVEPEAGVEEQERGESEHPN--------AVSRFRISVPLREKLKSKGIE 130
+EK K+ + +KV + E+ + E PN S F ++ + + L+S+GIE
Sbjct: 48 AEKRKRTEGSSKVSATSATAPAEKKDEEVPNNGCAATARPFSEFEMNPIVVKALQSRGIE 107
Query: 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV 190
S+FP+QA+TF+ ++ +D++ +ARTG GKTLAF +PI+E L P+ ++ GR P+
Sbjct: 108 SMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERLLKLPSHLTR----GRGPAA 163
Query: 191 LVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK 249
++ PTRELA QV DV G + GL LYGG Y QE L+ G+D+V+ TPGR K
Sbjct: 164 VIFCPTRELAIQVQ---DVLCGISCGLVVTALYGGVAYANQERVLRSGVDIVVATPGRAK 220
Query: 250 DHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN--------KVQTLLFS 301
D +E+G + + LDEAD ML +GF +D+EL+L +V + N QTLLFS
Sbjct: 221 DFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSVGAERPAHQTLLFS 280
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P WV S F+ DK+ ID+VG E ++ ++ ++ C+ S S ++ D+I+ YS
Sbjct: 281 ATVPEWVHTCS--FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYS 338
Query: 362 -SGGRTIIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
+ GRT++FT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT+V
Sbjct: 339 GAHGRTLVFTNTKKDCHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDV 398
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG----------------VEAAETIT 462
AARGLD+ V L+IQC PP D++A+IHR+GRTGRAG VE E
Sbjct: 399 AARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHA 458
Query: 463 QVSDSVIPA----------------------------FKSAAEELLNNSGLSAAELLAKA 494
++ V+PA F A ELL ++ E+LA A
Sbjct: 459 KMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMEQAAELLKDA--DPVEILASA 516
Query: 495 LAKAVGYT-EIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMA 553
LA GYT I +R L++ +VTV + + +P+ P + +LR L ++ + +
Sbjct: 517 LAVMSGYTSNITARGLITGTPGYVTVQMTSDRPLPVPVYC-SILRNNLGDDTFMRCRDIT 575
Query: 554 LTADGNGAVFDVPVADLDLF--RSGADNAANVSLEVLKQLPPLQERE 598
L D G VFDV L+ F R + ++ + ++ LPP+ R+
Sbjct: 576 LLQDDPGCVFDV----LEQFAERVMSTPMRGITFQRIEALPPIIARD 618
>gi|154332025|ref|XP_001561829.1| putative nucleolar RNA helicase II [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059150|emb|CAM36848.1| putative nucleolar RNA helicase II [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 689
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 220/624 (35%), Positives = 334/624 (53%), Gaps = 84/624 (13%)
Query: 43 KSKKKESSKKRKESEIEEEEERSETSSELGEPVN-LKSEKEKKKKKKAKVEPEAGVEEQE 101
++K ++K S+ +E + S+T ++ + N + +EK ++ + +KV A E
Sbjct: 11 EAKSHHTTKFTNSSDDDEPVKVSKTHTKASDHHNDIAAEKRQRTDESSKVAAAAAATRAE 70
Query: 102 RGESEHPN--------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
+ E PN S F ++ + + L+S+GIES+FP+QA+TF+ ++ +D++ +A
Sbjct: 71 VKDGEMPNNGCAATARPFSEFEMNPIVVKALQSRGIESMFPVQALTFNAIMRNADVLVQA 130
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG- 212
RTG GKTLAF +PI+E L K GR P+ ++ PTRELA QV DV G
Sbjct: 131 RTGSGKTLAFGIPIVERLL----KLQSHLTRGRGPAAVIFCPTRELAIQVQ---DVLCGI 183
Query: 213 AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE 272
+ GL LYGG Y QE L+ G+D+V+ TPGR KD +E+G + + LDEAD
Sbjct: 184 SCGLIVTALYGGVAYANQERVLRSGVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADH 243
Query: 273 MLRMGFVEDVELILGKVEDANKV--------QTLLFSATLPSWVKHISTKFLKSDKKTID 324
ML +GF +D+EL+L +V + N QTLLFSAT+P WV S F+ DK+ ID
Sbjct: 244 MLDIGFKDDIELLLSQVAEQNGSTSAEKTVHQTLLFSATVPEWVHTCS--FIAKDKEFID 301
Query: 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA--D 381
+VG E ++ ++ ++ C+ S S ++ D+I+ YS + GRT++FT TK+ L+ +
Sbjct: 302 MVGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINN 361
Query: 382 LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE 441
++ LHGD+QQ QRE T+ FR KF L+AT+VAARGLD+ V L+IQC PP D++
Sbjct: 362 TKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDID 421
Query: 442 AYIHRSGRTGRAG----------------VEAAETITQVSDSVIPA-------------- 471
A+IHR+GRTGRAG VE E ++ V+PA
Sbjct: 422 AFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARDA 481
Query: 472 --------------FKSAAEELLNNSGLSAAELLAKALAKAVGYT-EIKSRSLLSSLEDH 516
F A ELL ++ E+LA ALA GYT I +R L++ +
Sbjct: 482 AEDLARVERRATNLFMEQAAELLKDA--DPVEILASALAVMSGYTSNITTRGLITGTPGY 539
Query: 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSG 576
VTV + + +P+ P + +LR L ++ + + L D G VFDV L+ F
Sbjct: 540 VTVQMTSDRPLPIPVYC-SILRNNLGDDTFMRCRDITLLQDDPGCVFDV----LEQFAES 594
Query: 577 ADNAA--NVSLEVLKQLPPLQERE 598
N ++ + ++ LPP+ RE
Sbjct: 595 VMNTPMRGITFQRIESLPPIIARE 618
>gi|334349455|ref|XP_001380649.2| PREDICTED: nucleolar RNA helicase 2-like [Monodelphis domestica]
Length = 887
Score = 341 bits (875), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 236/624 (37%), Positives = 327/624 (52%), Gaps = 80/624 (12%)
Query: 25 KDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERS---ETSSELGEPVNLKSEK 81
K +E A T++ S K K KK+ ES ++ ++ + E + + GE
Sbjct: 242 KSLKERGGASTDEVSPKAKKTKKKEVPSENESPLKPKKTKKKDREVNGDTGE-------- 293
Query: 82 EKKKKKKAKVEPEAGVEEQERGES--------------------EHPNAVSRFRISVPLR 121
K+ K KV+ G+ ++ + A S F IS
Sbjct: 294 --KRPKLEKVKVSNGLSHSKQASDSEESSDEESHSEEEQELSAEQKEGAFSNFPISEETI 351
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E L S+
Sbjct: 352 QLLKARGVTYLFPIQAKTFHHVSSGKDLIAQARTGTGKTFSFAIPLVEKLQGD----SQP 407
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
GRAP +LVL PTREL+ QV +DF D+ LT C YGG PY+ Q +++GID+
Sbjct: 408 RPRGRAPKILVLAPTRELSIQVSKDFSDI---TKKLTVACFYGGTPYNGQIDLIRRGIDI 464
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQT 297
++GTPGRIKDH++ G +DL+ ++ VLDE D+ML MGF E VE IL K + + QT
Sbjct: 465 LVGTPGRIKDHLQNGRLDLTKVQHVVLDEVDQMLDMGFAEQVEEILTVAYKKDSEDNPQT 524
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LLFSAT P WV ++ K++KS + +DL+G + KA+ V H+ + C S R+ VI D+I
Sbjct: 525 LLFSATCPHWVYDVAKKYMKSTYEQVDLIGKKTQKAAVTVEHLAINCHWSQRAAVIGDVI 584
Query: 358 RCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ YS S GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+TL GFR+GKF L
Sbjct: 585 QVYSGSHGRTIIFCETKKEAQELSLNESIKQDAQSLHGDIPQKQREITLQGFRNGKFGVL 644
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG----------VEAAETITQ 463
VATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG + + Q
Sbjct: 645 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQKKEQHQLAQ 704
Query: 464 VSDSVIPAFK----SAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTV 519
V FK +A E++ S A L A+ R L D
Sbjct: 705 VERQAGITFKRVGVPSASEIIKASSKDAIRFLDSVPPAAIN----NFRQTAQKLIDEKGA 760
Query: 520 VLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADN 579
V + S A V +R L V G FDVP A++ F+ +
Sbjct: 761 VEALAAALAHISGATTVEQRSLINSDV-------------GVCFDVPAAEVKSFQDNWQD 807
Query: 580 AANVSLEVLKQLPPL-QEREQSRG 602
+ L V + P L Q+ ++ RG
Sbjct: 808 SRRWQLSVATERPELEQQPDEGRG 831
>gi|145474053|ref|XP_001423049.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124390109|emb|CAK55651.1| unnamed protein product [Paramecium tetraurelia]
Length = 651
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/482 (39%), Positives = 275/482 (57%), Gaps = 46/482 (9%)
Query: 121 REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180
R+ L+ +GI +LFPIQ F+ + +G D++G+ RTG GKTLA+ LPILE + K +K
Sbjct: 37 RKVLEGRGISNLFPIQQQCFETIYNGDDIIGQDRTGSGKTLAYCLPILERIRGLGLKQNK 96
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P VLVLLPTRELA QV +F+ + +YGG Q ++++G +
Sbjct: 97 N------PYVLVLLPTRELAIQVTTEFNTILHKENEYRIYSIYGGTDLRNQIDQVRQGCE 150
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+GTPGRI+D +ER + L ++ VLDEAD+ML GF E++E I+ + K+Q LL
Sbjct: 151 IVVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEKIMSYFNE-RKIQMLL 209
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P WVK +S K+++++ K I+L+ + + ST V+H L C+ + S I D++
Sbjct: 210 FSATIPDWVKELSHKYMEANTKHINLIKRHETQTSTTVKHYALQCARNQLSGAIGDVVSV 269
Query: 360 YS-SGGRTIIFTETKESASQ--LADLLPG-ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
Y RTIIF ETK ++ L LP + LHGDI Q QR VT GF++GKF LVA
Sbjct: 270 YGGRHARTIIFCETKRECNEIILHSKLPAETQPLHGDIPQQQRTVTFEGFKNGKFKCLVA 329
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG--------------------- 454
TNVAARGLD V LIIQC PP+D+E+YIHRSGRTGRAG
Sbjct: 330 TNVAARGLDFPQVDLIIQCNPPKDIESYIHRSGRTGRAGKDGKDMGLIERVERVAKIKFI 389
Query: 455 ----------VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTE- 503
++A+ Q ++ F+ A+E++ S E LA+ALA GY +
Sbjct: 390 KISAPQHQDIIKASSRDLQTIKRLVDMFQPVAQEII--SRCDPVEALARALACVSGYKDK 447
Query: 504 IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVF 563
+++RS+L S E ++T VL + P + + L+ E+ +KGM + NG F
Sbjct: 448 LQNRSMLGSFEGYITQVLRSSTPFQACGYIWKFLKNNFSEQICNSIKGMKKIRNENGVAF 507
Query: 564 DV 565
D+
Sbjct: 508 DI 509
>gi|449667537|ref|XP_002167666.2| PREDICTED: nucleolar RNA helicase 2-like [Hydra magnipapillata]
Length = 543
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 205/505 (40%), Positives = 285/505 (56%), Gaps = 59/505 (11%)
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
RTG GKTL F LP+LE L N ++ +K +P VL L PTRELA Q+ ++ + Y
Sbjct: 4 RTGTGKTLGFALPVLEKLKNIDSEQKRK-----SPLVLTLAPTRELAIQICKEVEKYKPR 58
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
+T C YGGAPY QE +L+ GID ++GTPGRI DHI +G +D+S L++ +LDEAD M
Sbjct: 59 -QMTISCFYGGAPYDKQEQELRNGIDFLVGTPGRILDHINKGRLDVSKLQYVILDEADRM 117
Query: 274 LRMGFVEDVELIL--GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKM 331
+ MGF E +E IL ED NK QTLLFSAT+P+W++ S K+L + K DL+G +K
Sbjct: 118 MDMGFQESMEEILSYAYTED-NKPQTLLFSATVPAWLQKNSEKYLTKNLKKFDLIGRDKN 176
Query: 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLA---DLLPGAR 387
K +T V H + C+ R I DII+ YS G+TIIFT TK+ A++LA + ++
Sbjct: 177 KGATTVEHKAIKCTYWDRPSTIKDIIQQYSGKFGKTIIFTSTKQEANELALNSVINMDSQ 236
Query: 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRS 447
LHGDIQQ QRE+TL FR+GKF L+AT+VAARGLDI +V L+IQ EPP+DV++YIHR+
Sbjct: 237 VLHGDIQQKQRELTLQSFRNGKFNCLIATDVAARGLDIPEVDLVIQTEPPKDVDSYIHRA 296
Query: 448 GRTGRAGV--------------------------------------------EAAETITQ 463
GRTGRAG +A ++ +
Sbjct: 297 GRTGRAGRKGVCIIFYKPGQEYGVAAVEHKAGISFTRIGAPQQKDLIAASAEDAVRSLDE 356
Query: 464 VSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEA 523
V + VI F A +L+ G A + LA ALA G TEI +RS+L+S + T +++
Sbjct: 357 VKEDVISYFLDCARDLIEKRG--AEKALAAALAYISGTTEIVNRSMLTSQPGYTTYLMKQ 414
Query: 524 GKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANV 583
+ + + LRR+ + ++ +KGM + D G VFDVP + +
Sbjct: 415 NLELRSTGLIWHTLRRYFDQTFIDSIKGMRICKDKLGCVFDVPTESIKVIEECWKGDKFS 474
Query: 584 SLEVLKQLPPLQEREQSRGRFGGGG 608
+LE + +LP L E Q G G
Sbjct: 475 TLEPITELPELMEGVQGFQNNTGAG 499
>gi|405978792|gb|EKC43154.1| Nucleolar RNA helicase 2 [Crassostrea gigas]
Length = 671
Score = 338 bits (868), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 213/556 (38%), Positives = 291/556 (52%), Gaps = 92/556 (16%)
Query: 92 EPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
E + G + E+ E+E S FR+S EKLK + + LFPIQ TFD V +G D++G
Sbjct: 138 ETKNGADLSEKTEAEILGDFSNFRLSDVTVEKLKKRNVNYLFPIQYKTFDHVYNGEDVIG 197
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211
+ARTG GKT V+ ++PTRELAKQV ++F+
Sbjct: 198 QARTGTGKT-----------------------------VIAMVPTRELAKQVSDEFESIS 228
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
GL+ C YGG PY Q ++ GIDV++GTPGRIKDHIE+GN+D ++ VLDE D
Sbjct: 229 D--GLSVACFYGGTPYEKQIRAIRSGIDVLVGTPGRIKDHIEKGNLDFKGVRHVVLDEVD 286
Query: 272 EMLRMGFVEDVELILGKVED---ANKVQTLLFSATLPSWVKHISTKFLKSDK-KTIDLVG 327
ML MGF EDVE I+ + QTLLFSATLPSWV + K++ DK + LV
Sbjct: 287 RMLDMGFAEDVETIISSAYNNGSGENPQTLLFSATLPSWVHDTARKYMNKDKLAKVSLVN 346
Query: 328 NEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLL 383
+++ + ST V+H+ + S R VI D+++ YS GR IIF ETK+ A L+ +
Sbjct: 347 SQENRTSTTVQHLAIRSSFWDRPSVIGDVLQVYSGKNGRAIIFNETKKEADNLSCSEYIK 406
Query: 384 PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
A LHGDI Q +RE L FR GKF L+ T+VAARGLDI +V L+IQC PP DV++Y
Sbjct: 407 QDAHVLHGDIPQEKRETVLKSFREGKFNVLLTTDVAARGLDIPEVDLVIQCNPPEDVDSY 466
Query: 444 IHRSGRTGRAGV--------------------------------------------EAAE 459
IHRSGRTGRAG +A
Sbjct: 467 IHRSGRTGRAGKNGVCICFYKPEEEMKLANVEYRAKIKFKKVSGPTKEDIISASVEDAVR 526
Query: 460 TITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTV 519
+I V + F+S+A+EL+ G A + LA ALA G T+I SRS+LSS E T
Sbjct: 527 SIEGVQSETLDYFRSSAKELIAERG--AEDALAAALALISGSTKITSRSMLSSKEGFTTF 584
Query: 520 VLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAV-------FDVPVADLDL 572
L+ I ++ + L R LP++ VE ++ + L D +V FD+
Sbjct: 585 YLKTNTEIQRNNYVYRALERCLPKDLVEKIRWLTLCKDRMASVGIQLDLRFDIDFNFGSG 644
Query: 573 FRSGADNAANVSLEVL 588
+ + +NV+L V+
Sbjct: 645 YSGSMKSKSNVTLSVM 660
>gi|124088759|ref|XP_001347224.1| Nucleolar RNA helicase II [Paramecium tetraurelia strain d4-2]
gi|50057613|emb|CAH03597.1| Nucleolar RNA helicase II, putative [Paramecium tetraurelia]
Length = 664
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 193/495 (38%), Positives = 277/495 (55%), Gaps = 59/495 (11%)
Query: 121 REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180
R+ L+ +GI +LFPIQ F+ + +G D++G+ RTG GKTLA+ LPILE + K +K
Sbjct: 37 RKVLEGRGISNLFPIQQQCFETIYNGDDIIGQDRTGSGKTLAYCLPILERIRGLGLKQNK 96
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P VLVLLPTRELA QV +F+ + +YGG Q ++++G +
Sbjct: 97 N------PYVLVLLPTRELAIQVTTEFNTILHKENEYRIYSIYGGTDLRNQIDQVRQGCE 150
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+GTPGRI+D +ER + L ++ VLDEAD+ML GF E++E I+ + K+Q LL
Sbjct: 151 IVVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEKIMSYFNE-RKIQMLL 209
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P WVK +S K+++++ K I+L+ + + ST V+H L C+ + S I D++
Sbjct: 210 FSATIPDWVKELSHKYMEANTKHINLIKRHETQTSTTVKHYALQCARNQLSGAIGDVVSV 269
Query: 360 YS-SGGRTIIFTETKESASQ--LADLLPG-ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
Y RTIIF ETK ++ L LP + LHGDI Q QR VT GF++GKF LVA
Sbjct: 270 YGGRHARTIIFCETKRECNEIILHSKLPAETQPLHGDIPQQQRTVTFEGFKNGKFKCLVA 329
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG----------------VEAAE 459
TNVAARGLD V LIIQC PP+D+E+YIHRSGRTGRAG +E E
Sbjct: 330 TNVAARGLDFPQVDLIIQCNPPKDIESYIHRSGRTGRAGKDGVCITFYSKKDMGLIERVE 389
Query: 460 TITQ----------------------------VSDSVIPAFKSAAEELLNNSGLSAAELL 491
+ + VS ++ F+ A+E++ S E L
Sbjct: 390 RVAKIKFIKISAPQHQDIIKASSRDLQTSLQVVSKEIVDMFQPVAQEII--SRCDPVEAL 447
Query: 492 AKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVK 550
A+ALA GY + +++RS+L S E ++T VL + P + + L+ E+ +K
Sbjct: 448 ARALACVSGYKDKLQNRSMLGSFEGYITYVLRSSTPFQACGYIWKFLKNNFSEQICNSIK 507
Query: 551 GMALTADGNGAVFDV 565
GM + NG FD+
Sbjct: 508 GMKKIRNENGVAFDI 522
>gi|403350666|gb|EJY74800.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 795
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 215/624 (34%), Positives = 319/624 (51%), Gaps = 86/624 (13%)
Query: 30 TEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKA 89
+E+ ++ D KKS KKE S +K +E+E + +T ++
Sbjct: 45 SESKKRDEKRDDKKSIKKEKSPSKKTIAVEKEVDHVKT-----------------RRMSQ 87
Query: 90 KVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDL 149
+ A +QE P +I+ E LK +GI LFP+Q +F+ + + DL
Sbjct: 88 AADQLASTVDQEGLYENFP------QITPKTVELLKKRGISGLFPVQYSSFNHIWNRKDL 141
Query: 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209
+ R TG GKTL F LP +E L ++K +VL PTRELA QV ++F+
Sbjct: 142 IVRDLTGSGKTLGFALPTVEYLRKNKLFGTRKI------QAMVLAPTRELALQVSKEFNA 195
Query: 210 YGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268
G +YGG Q ++L+KG+D+ +GT GR+ DH+ER N D + LK +LD
Sbjct: 196 LKHFEGEYNVLTVYGGVSIDDQTYQLRKGVDIFVGTTGRVMDHMERRNFDFTDLKTLILD 255
Query: 269 EADEMLRMGFVEDVELILGKVEDA--NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326
E D+ML+ GF EDVE I+ ++ A N +Q LLFSAT+P WVK ++ + + D + +DL
Sbjct: 256 ETDQMLKQGFKEDVERIMQTIKAARPNGMQVLLFSATIPFWVKQVAKEQMAPDFQMVDLA 315
Query: 327 GNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA---DLL 383
N K K S V H+ + C R + DI+ CY G+TI+F TK A+ L +
Sbjct: 316 QNLKNKTSKTVNHLSINCPYQNRMSALADILICYGGLGQTIVFCSTKAEANSLLLSDKIK 375
Query: 384 PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
+HGDI Q+QREVTL F+ KF LVAT+VA+RGLDI +V L+IQ EPP DVE+Y
Sbjct: 376 QDIEVMHGDIAQNQREVTLKRFKENKFSVLVATDVASRGLDIPNVDLVIQVEPPNDVESY 435
Query: 444 IHRSGRTGRAG---------------------------------------VEAA-----E 459
IHR+GRT RAG ++A+ +
Sbjct: 436 IHRAGRTARAGRTGTCITFYGKKHQYMINMIEQKAGIKFQKIGVPQPEDVIKASSRDVIK 495
Query: 460 TITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTE--IKSRSLLSSLEDHV 517
+ QV+D V+P F A+ L+ G A + L LA G+ + + SRS+L+ E++V
Sbjct: 496 NLDQVNDEVLPLFDDTADGLIQKYGGDAKKALTATLAYLSGHYKNVLGSRSVLTGQENYV 555
Query: 518 TVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGA 577
T+ ++ P + SF + +L+R L + V ++GM + D G VFDV ++ F
Sbjct: 556 TIEMKFDNPFNSVSFVWSILKRHLTDSIVNGIRGMRMFKDLKGVVFDVTDDSIEKFEDVF 615
Query: 578 DNAAN---VSLEV--LKQLPPLQE 596
++ A V V K+LP L+E
Sbjct: 616 NHLATEKRVDFHVGRAKELPELKE 639
>gi|407397666|gb|EKF27840.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi marinkellei]
Length = 634
Score = 335 bits (858), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 228/612 (37%), Positives = 323/612 (52%), Gaps = 71/612 (11%)
Query: 76 NLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPI 135
N +EK + + K + G E + + S F + E LKS+GI +LFP+
Sbjct: 17 NPSAEKRARYETNEKDDKSGGGEGSKNDSTVTGRPFSDFDLLPTTVEALKSQGITTLFPV 76
Query: 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195
QA+T++ ++ GS+++ +ARTG GKTLAF +PI+E L K++ GR P+ ++ P
Sbjct: 77 QALTYEAIMKGSNVLVQARTGSGKTLAFGIPIVEQLAR-TMKSNNPPVRGRGPAAVIFCP 135
Query: 196 TRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
TRELA QV DV G + G LYGG Y QE L G+DVV+ TPGR KD +E+
Sbjct: 136 TRELAIQVR---DVIAGISKGFVVTALYGGVAYSTQERALYNGVDVVVATPGRAKDFLEK 192
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN-------KVQTLLFSATLPSW 307
+ +K LDEAD ML +GF +D+EL+L KV + N QTLLFSAT+P W
Sbjct: 193 RTLCFDRVKVVCLDEADHMLDIGFKDDIELLLQKVAEQNGSTEGNLNHQTLLFSATVPEW 252
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRT 366
V S F+ DK+ ID+VG M+A+ ++ C S S ++ D+++ YS GRT
Sbjct: 253 VHTCS--FIPKDKEFIDMVGQGTMRAAHTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRT 310
Query: 367 IIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
++FT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT+VAARGLD
Sbjct: 311 LVFTNTKKDCHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLD 370
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------------------------ 454
+ V L+IQC PP D++A+IHR+GRTGRAG
Sbjct: 371 LPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKIKFEV 430
Query: 455 --------------VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVG 500
+AAE + +V S F A ELL ++ A E+LA A+A G
Sbjct: 431 LPAPTRDEILRAVARDAAEDLARVERSATNLFMEQAAELLKDA--DATEILASAIAVMSG 488
Query: 501 YT-EIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGN 559
YT I R L++ + VT+ + + + P F +LR L + + + L +
Sbjct: 489 YTSSITRRGLITGAKGSVTIQMLGQRTLPIPVFC-SILRNSLGDNLFTRCRDITLLQESP 547
Query: 560 GAVFDVP--VADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRGGFGGRGG 617
G VFDVP VAD L + + L V++ LPP+ RE + G GGGG+G F GRGG
Sbjct: 548 GCVFDVPEEVADQIL----STPIRGMELSVIETLPPIIARELNSGNRGGGGQGYFNGRGG 603
Query: 618 NRFSGGRGGGFS 629
+ GGG S
Sbjct: 604 SNGYYRNGGGNS 615
>gi|356534927|ref|XP_003536002.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 736
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 232/621 (37%), Positives = 333/621 (53%), Gaps = 78/621 (12%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
E + S+H +S+ + PL L+ +GI SLFPIQ L+G D++ RA+TG G
Sbjct: 82 EPDTNVSDHELDISKLGLPSPLVHSLQKRGIISLFPIQRAVLVPALEGKDIIARAKTGTG 141
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
KTLAF +PIL+ LTN ++ + GR P LVL PTRELAKQV ++ + A L +
Sbjct: 142 KTLAFGIPILKGLTNDDEQSPHRRS-GRLPKALVLAPTRELAKQVEKE--IQESAPYLKT 198
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C+YGG Y Q+ L +G+DVV+GTPGRI D + ++ LS +++ VLDEAD+ML +GF
Sbjct: 199 VCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADQMLAVGF 258
Query: 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338
EDVE+IL KV + QT+LFSAT+P WVK +S K+L ++ TIDLVG ++ K + ++
Sbjct: 259 EEDVEVILDKV--PTQRQTMLFSATMPGWVKKLSRKYL-NNPLTIDLVGEQEEKLAEGIK 315
Query: 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQ 395
L +++++ V+ D+I Y+ GG+TI+FT+TK+ A +++ L + ALHGDI Q
Sbjct: 316 LYALLATATSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGDISQ 375
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455
QRE TL GFR GKF LVAT+VAARGLDI +V L+I E P D E ++HRSGRTGRAG
Sbjct: 376 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGK 435
Query: 456 EAAETITQVSD----------------------SVIPAFKSAAEEL---LNNSGLSAAEL 490
E + S +V +S+AE++ LN + E
Sbjct: 436 EGTAILMYTSSQRRTVRSLERDVGSKFEFVSPPAVEEILESSAEQVVATLNRVHPESVEF 495
Query: 491 LAKALAKAV----------------GYTEIKS-RSLLSSLEDHVTVVLEAGKPIYTPSFA 533
K V G+++ S RSL++ + T+ L F+
Sbjct: 496 FTATAQKLVEEQGARALAAALAQMSGFSQPPSCRSLINHEQGWTTLQLTRDSDTSGRYFS 555
Query: 534 FGVLRRFLPE---EKVELVKGMALTADG--NGAVFDVP--VADLDLFRSGADNAANVSLE 586
+ FL + + + V + L AD GAVFD+P +A L + D + ++
Sbjct: 556 ARSVTGFLSDVYSQAADEVGKIHLIADERVQGAVFDLPEEIAKELLNK---DMPSGNTIS 612
Query: 587 VLKQLPPLQEREQSR---GRFGGGGRGGFGG---RGGNRFSGGRGGGFSDRRNDRFSGGF 640
+ +LPPLQ+ E + G+F R G + G R S GR GG ND F G
Sbjct: 613 KITKLPPLQDNEPASDFYGKFSDRDRSNPRGSRDQRGFRSSRGREGG--QDSNDEFGRGG 670
Query: 641 RG---------SKGRGGGNRW 652
R + G+ GN W
Sbjct: 671 RSFRSGNNRSRTTGKSSGNDW 691
>gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase [Deinococcus geothermalis DSM 11300]
gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM
11300]
Length = 591
Score = 334 bits (857), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 232/589 (39%), Positives = 328/589 (55%), Gaps = 84/589 (14%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
I+ L +L +GI PIQA + L G DL+GRARTG GKTLAF LPI+++LT
Sbjct: 7 IAPELAARLAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPIIQNLTAPD 66
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+ S++ G R P +V+ PTRELAKQV E+F G L++ +YGGA Y QE L+
Sbjct: 67 GRGSRERG--RLPRAIVIAPTRELAKQVAEEFSKSGPQ--LSTVTVYGGAAYGPQENALR 122
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
+G+DVV+GTPGR+ DH+ERGN+DLS++++ VLDEADEML +GF + +E IL + A
Sbjct: 123 RGVDVVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTPAAR-- 180
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSATL + ++ K+L+ + +DLVG K +A+ +V H+ + + R++V+ D
Sbjct: 181 QTMLFSATLNDEIHRLARKYLR-EPVVVDLVGEGKSQAAQSVEHLKVKVGRT-RTRVLAD 238
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
++ Y+ + I+FT TK A +LA+ L + ALHGD+ QSQRE L FRSG+
Sbjct: 239 LLTVYNP-EKAIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGRVG 297
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG----------------- 454
LVAT+VAARGLDI +V L++Q P+D E+Y+HRSGRTGRAG
Sbjct: 298 VLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGDRENREL 357
Query: 455 ---------------------VEA------AETITQVSDSVIPAFKSAAEELLNNSGLSA 487
V+A A+ + +V V F++ AE L + GL A
Sbjct: 358 RNLEYRTGVQFKERPLPTPKEVQAASARASADLVRKVDSGVAATFQAEAERLFSELGLEA 417
Query: 488 AELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKV 546
LA+ALAK G TE +++ SLLS E T++L G+ + P +L R +
Sbjct: 418 ---LARALAKISGVTEPVQAASLLSGEEGLTTLILR-GERLSVPR-TVALLARSGDVDTR 472
Query: 547 ELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGRFGG 606
L K + G V DVP ++ + + V LEV ++LP L E GR
Sbjct: 473 RLGK---VRQWRGGTVADVPSEYVEKLLAASPLEGEVHLEVAQELPELFEAPTREGR--- 526
Query: 607 GGRGGFGGRGGNR-------FSGGRGGGFSDRRNDRFSGGFRGSKGRGG 648
+G +G R G+R F G R GG+ +R GG RGS+GR G
Sbjct: 527 --QGSYGPRTGSRDESGSRNFRGSR-GGYGNR-----EGGSRGSQGRWG 567
>gi|72389634|ref|XP_845112.1| nucleolar RNA helicase II [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62176655|gb|AAX70758.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
gi|62360172|gb|AAX80591.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
gi|70801646|gb|AAZ11553.1| nucleolar RNA helicase II, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261328479|emb|CBH11456.1| nucleolar RNA helicase Gu, putative [Trypanosoma brucei gambiense
DAL972]
Length = 632
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 219/581 (37%), Positives = 306/581 (52%), Gaps = 75/581 (12%)
Query: 78 KSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSR----FRISVPLREKLKSKGIESLF 133
+ E K K+++ E G EE ++ + AV R F +S + + L+++GI SLF
Sbjct: 11 RHEGHVTKTKRSR-EEMTGNEETDQEPNNGSAAVGRPFSEFNLSSGMVKALEAQGIVSLF 69
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
P+QA+TF+ ++ G D++ +ARTG GKTLAF +PI+E L K GR P+ ++
Sbjct: 70 PVQALTFEAIMRGEDVLVQARTGSGKTLAFGIPIVEKL----NKKEGPLARGRGPAAVIF 125
Query: 194 LPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV DV G G L LYGG Y QE L G+D+V+ TPGR KD +
Sbjct: 126 CPTRELAIQVR---DVLAGVSGDLVVAALYGGVAYSTQERVLFSGVDIVVATPGRAKDFL 182
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN-------KVQTLLFSATLP 305
E+G + +K LDEAD ML +GF ED+EL+L +V + N K QTLLFSAT+P
Sbjct: 183 EKGTLHFERVKMVCLDEADHMLDIGFKEDIELLLQRVAEQNGSTPDEPKHQTLLFSATVP 242
Query: 306 SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GG 364
WV S F+ +KK ID+VG M+A+ +R C + S ++ D+++ YS G
Sbjct: 243 DWVHTCS--FISKNKKFIDMVGQGAMRAANTIRFYRRKCGFAEVSSMLADLVKVYSGRHG 300
Query: 365 RTIIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
RT+IFT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT+VAARG
Sbjct: 301 RTLIFTNTKKDCHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARG 360
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG---------------------------- 454
LD+ V L+IQC PP D++A+IHR+GRTGRAG
Sbjct: 361 LDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPKDEYVVERIERHAKIKF 420
Query: 455 ----------------VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKA 498
+AAE + +V S F A ELL ++ E+LA A+A
Sbjct: 421 EVLPAPTREEILKAVARDAAEDMARVERSATNLFMDQAAELLKDA--DPTEILASAIAVM 478
Query: 499 VGYT-EIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD 557
GYT I R L+S TV + + + T F +LR L +E + + L D
Sbjct: 479 SGYTSSITKRGLISGARGSATVQMLGQRSLPTHVFC-SILRNNLGDELFMRCRDITLLQD 537
Query: 558 GNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQERE 598
G VFDVP +D R + L V++ LPP+ RE
Sbjct: 538 APGCVFDVPEDVVD--RILNTPVQGMELSVIETLPPIIARE 576
>gi|145544585|ref|XP_001457977.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425796|emb|CAK90580.1| unnamed protein product [Paramecium tetraurelia]
Length = 647
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 192/492 (39%), Positives = 276/492 (56%), Gaps = 59/492 (11%)
Query: 121 REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180
R+ L+S+GI +LFPIQ F+ + +G D++G+ RTG GKTLA+ LPILE + K +K
Sbjct: 37 RKVLESRGIANLFPIQQQCFETIYNGDDIIGQDRTGSGKTLAYCLPILERIRGLGLKQNK 96
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P VLVLLPTRELA QV +F+ + +YGG Q ++++G +
Sbjct: 97 N------PYVLVLLPTRELAIQVTTEFNSILHKENEYRIYSIYGGTDLRNQIDQVRQGCE 150
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+GTPGRI+D +ER + L ++ VLDEAD+ML GF E++E I+ D K+Q LL
Sbjct: 151 IVVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEKIMSYFND-RKIQMLL 209
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P WVK +S K+++++ K I+L+ + + ST V+H L C+ + + I D++
Sbjct: 210 FSATIPDWVKELSQKYMEANTKHINLIKRHETQTSTTVKHYALQCAKNQLTGAIGDVVSV 269
Query: 360 YS-SGGRTIIFTETKESASQ--LADLLPG-ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
Y RTIIF ETK ++ L LP + LHGDI Q QR VT GF++GKF LVA
Sbjct: 270 YGGRHARTIIFCETKRECNEIILHSKLPAETQPLHGDIPQQQRTVTFEGFKNGKFKCLVA 329
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG----------------VEAAE 459
TNVAARGLD V LIIQC PP+D+E+YIHRSGRTGRAG +E E
Sbjct: 330 TNVAARGLDFPQVDLIIQCNPPKDIESYIHRSGRTGRAGKDGICITFYSKKDMSLIERVE 389
Query: 460 TITQ----------------------------VSDSVIPAFKSAAEELLNNSGLSAAELL 491
+ + VS ++ F+ A+E+L S E L
Sbjct: 390 RVAKIKFIKISAPQHQDIIKASSRDLQTSLQVVSKEIVDLFQPVAQEIL--SRCDPVEAL 447
Query: 492 AKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVK 550
A+ALA GY + +++RS+L S E ++T VL + P + + L+ E+ +K
Sbjct: 448 ARALACVSGYKDKLQNRSMLGSFEGYITYVLRSSTPFQACGYIWKFLKNNFSEQICNSIK 507
Query: 551 GMALTADGNGAV 562
GM + +G +
Sbjct: 508 GMKKLRNESGRI 519
>gi|71409597|ref|XP_807135.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
gi|70871069|gb|EAN85284.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 633
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 224/601 (37%), Positives = 321/601 (53%), Gaps = 71/601 (11%)
Query: 76 NLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPI 135
N +EK + + + G E G + S F + E LKS+GI +LFP+
Sbjct: 17 NPSAEKRARYETNESDDKSGGGEAPNNGSALTGRPFSDFDLLPNTVEALKSQGITTLFPV 76
Query: 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195
QA+T++ ++ GS+++ +ARTG GKTLAF +PI+E L TK++++ GR P+ ++ P
Sbjct: 77 QALTYEAIMKGSNVLVQARTGSGKTLAFGIPIVEKLAR-TTKSNEQPVRGRGPAAVIFCP 135
Query: 196 TRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
TRELA QV DV G + G LYGG Y QE L G+DVV+ TPGR KD +E+
Sbjct: 136 TRELAIQVR---DVIAGISKGFVVTALYGGVAYSTQERALYSGVDVVVATPGRAKDFLEK 192
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN-------KVQTLLFSATLPSW 307
+ +K LDEAD ML +GF +D+EL+L KV + N QTLLFSAT+P W
Sbjct: 193 RTLCFDRVKVVCLDEADHMLDIGFKDDIELLLQKVAEQNGSTEGNPTHQTLLFSATVPEW 252
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRT 366
V S F+ +K+ ID+VG M+A+ ++ C S S ++ D+++ YS GRT
Sbjct: 253 VHTCS--FIPRNKEFIDMVGQGTMRAANTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRT 310
Query: 367 IIFTETKESASQLA--DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
++FT TK+ L+ + ++ LHGD+QQ QRE T+ FR KF L+AT+VAARGLD
Sbjct: 311 LVFTNTKKECHDLSINNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLD 370
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------------------------ 454
+ V L+IQC PP D++A+IHR+GRTGRAG
Sbjct: 371 LPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKIKFEV 430
Query: 455 --------------VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVG 500
+AAE + +V S F A ELL ++ A E+LA A+A G
Sbjct: 431 LPAPTRDEILRAVARDAAEDLARVERSATNLFMEQAAELLKDA--DATEILASAIAVMSG 488
Query: 501 YT-EIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGN 559
YT I R L++ + VT+ + + + P F +LR L + + + L +
Sbjct: 489 YTSSITRRGLITGAKGSVTIQMLGQRTLPIPVFC-SILRNSLGDNLFTRCRDITLLQESP 547
Query: 560 GAVFDVP--VADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRGGFGGRGG 617
G VFDVP VAD L + + L V++ LPP+ RE + G GGGG+G F GRGG
Sbjct: 548 GCVFDVPEEVADQIL----SAPIRGMQLGVIETLPPIIARELNSGNRGGGGQGYFNGRGG 603
Query: 618 N 618
+
Sbjct: 604 S 604
>gi|356574052|ref|XP_003555166.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 736
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 228/604 (37%), Positives = 327/604 (54%), Gaps = 77/604 (12%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
E + S+H +S+ + PL L+ +GI SLFPIQ L+G D++ RA+TG G
Sbjct: 84 EPDTNVSDHELDISKLGLPSPLVHSLQQRGITSLFPIQRAVLVPALEGKDIIARAKTGTG 143
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
KTLAF +PIL+ LT+ ++S + GR P LVL PTRELAKQV ++ + A L +
Sbjct: 144 KTLAFGIPILKGLTDDDEQSSHRRS-GRLPKALVLAPTRELAKQVEKE--IQESAPYLKT 200
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C+YGG Y Q+ L G+DVV+GTPGRI D + ++ LS +++ VLDEAD ML +GF
Sbjct: 201 VCVYGGVSYVTQQGALSHGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADRMLAVGF 260
Query: 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338
EDVE+IL KV + QT+LFSAT+P WVK +S K+L ++ TIDLVG ++ K + ++
Sbjct: 261 EEDVEVILDKV--PAQRQTMLFSATMPGWVKKLSRKYL-NNPLTIDLVGEQEEKLAEGIK 317
Query: 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQ 395
L ++S++ V+ D+I Y+ GG+TI+FT+TK+ A +++ L + ALHGDI Q
Sbjct: 318 LYALSATASSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGDISQ 377
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455
QRE TL GFR GKF LVAT+VAARGLDI +V L+I E P D E ++HRSGRTGRAG
Sbjct: 378 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGK 437
Query: 456 EAA----------ETITQVSDSVIPAFK----SAAEELLNNSGLSAAELLAKALAKAV-- 499
E T+ + V F+ A EE+L +S L + ++V
Sbjct: 438 EGTAILMYTSSQRRTVRSLERDVGCKFEFVSPPAMEEILESSAEQVVATLNRVHPESVDF 497
Query: 500 -------------------------GYTEIKS-RSLLSSLEDHVTVVLEAGKPIYTPSFA 533
G+++ S RSL++ + T+ L F+
Sbjct: 498 FIATAQKLVEEQGARALAAALAQMSGFSQPPSCRSLINHEQGWTTLQLTRDPDTSARYFS 557
Query: 534 FGVLRRFLPE---EKVELVKGMALTADG--NGAVFDVP--VADLDLFRSGADNAANVSLE 586
+ FL + + V + L AD GAVFD+P +A L + D + ++
Sbjct: 558 ARSVTGFLSDVYSPAADEVGKIHLIADERVQGAVFDLPEEIAKELLTK---DLPSGNTIS 614
Query: 587 VLKQLPPLQEREQSRGRFGGGGRGGFGGRGGNRFSGGRGGGFSDRRNDRFSGGFRGSKGR 646
+ +LPPLQ+ E + + G F R +R S+RR R GFR S+G
Sbjct: 615 KITKLPPLQDDEPASDFY-----GKFSDR--DR---------SNRRGSRDQRGFRSSRGW 658
Query: 647 GGGN 650
GG
Sbjct: 659 EGGQ 662
>gi|66475994|ref|XP_627813.1| nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase
[Cryptosporidium parvum Iowa II]
gi|46229325|gb|EAK90174.1| nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase
[Cryptosporidium parvum Iowa II]
Length = 738
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 177/384 (46%), Positives = 256/384 (66%), Gaps = 26/384 (6%)
Query: 94 EAGVEEQERG-ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
E+ ++ ++R ESE ++ RF +S RE L+S+GIE LFPIQA +F+ + D++G+
Sbjct: 48 ESNMDHKKRKLESEVDGSIDRFPLSDESREILRSRGIERLFPIQAQSFESIYGKKDVLGK 107
Query: 153 ARTGQGKTLAFVLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211
A+TG GKTLAFVLP++E L G +K +GR P VLVLLPTRELA+QV +F++
Sbjct: 108 AKTGTGKTLAFVLPVIERLLKKGKFDPNK---HGRRPLVLVLLPTRELAQQVSNEFELMK 164
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
G C +YGG+P + Q ++KKG+D+V+G PGR+ D IERG +++S + LDEAD
Sbjct: 165 GKDRYKVCSVYGGSPEYPQIQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEAD 224
Query: 272 EMLRMGFVEDVELILGKVED----------ANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
+ML MGF E V+ I+ V NK Q LLFSAT+P WVK+I T+ + SD
Sbjct: 225 KMLEMGFKETVDKIIDCVRKETGDGETHSRQNKFQVLLFSATVPPWVKNILTEIMSSDTV 284
Query: 322 TIDLV-----GNEKMKAS--TNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETK 373
T+D+ G E+ +A+ + +RH+ + C+ R+ ++ DII Y+ G+ IIFTETK
Sbjct: 285 TVDVTHISIHGEEEDEAAARSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETK 344
Query: 374 ESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430
++A+++A ++ + LHGDIQQ+QRE+ L F+ G++ LVAT+VAARGL I+DV +
Sbjct: 345 QTANEIAMRSEISKMCQVLHGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAV 404
Query: 431 IIQCEPPRDVEAYIHRSGRTGRAG 454
+IQ PPRD++ YIHRSGRTGRAG
Sbjct: 405 VIQLAPPRDIDTYIHRSGRTGRAG 428
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 486 SAAELLAKALAKAVGYT----EIKSRSLLSSLEDHVTVVLEAGK---PIYTPSFAFGVLR 538
A L+ L + G +I RS+L+ ED + ++ + PI + S+ + L+
Sbjct: 547 CAVRALSHCLLELTGINNDLKKIPHRSVLNGREDFKSYMITFNRLKEPIASNSYVWRCLK 606
Query: 539 RFL--PEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADN 579
L E +E ++ M L G+GAVFDVP+ + + S N
Sbjct: 607 SNLRGCEGLIERIQCMTLLKKGDGAVFDVPLGSIRQWESAISN 649
>gi|449016019|dbj|BAM79421.1| nucleolar RNA helicase II/Gu [Cyanidioschyzon merolae strain 10D]
Length = 748
Score = 329 bits (844), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 212/558 (37%), Positives = 303/558 (54%), Gaps = 68/558 (12%)
Query: 75 VNLKSEK-EKKKKKKAKVEPEAGVEEQERGESEHPN-AVSRFRISVPLREKLKSKGIESL 132
++L SE+ E K+ +E E ES+H + ++ RF +S L+ KGI L
Sbjct: 71 LSLPSEELESTKQDGVVIEAENAT-----SESKHRDWSLERFPLSEATAAALRKKGITEL 125
Query: 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG-PTKASKKTGYGRAPSVL 191
IQA+TF+ + G D++GR+ TG GKT AF +P++E + + S++ GR+P L
Sbjct: 126 TEIQAITFNDMRSGRDVIGRSHTGTGKTFAFGVPLVERMVEARVSNGSRRGAPGRSPCAL 185
Query: 192 VLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDH 251
VL PTRELAKQV E + G GL C YGGA Y QE L++G DV++GTPGRI DH
Sbjct: 186 VLTPTRELAKQVTEQLRLIGQPHGLAVDCFYGGASYTQQEEALRRGFDVLVGTPGRILDH 245
Query: 252 IERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHI 311
++RG ++LS+++ VLDEADEML +GF EDVE I K+ + QT+LFSAT+P WV+ I
Sbjct: 246 LDRGTLNLSNIRIAVLDEADEMLSLGFAEDVERIFQKMPPKEERQTVLFSATIPPWVQKI 305
Query: 312 STKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSSSARSQVIPDIIRCYSSGG--RTI 367
+ + ++ D+VG + +A+ NVRH+ +P + AR ++ DI+ ++ G R I
Sbjct: 306 AAQHQRA-PVVHDVVGRTETRAAKNVRHVAVRVPDADFARFAMLEDIVFAHAETGNQRCI 364
Query: 368 IFTETKESASQLADLL-----PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
+FT+TK A ++A A+ LHGD+ Q QRE+TL FR G+F LVAT+VAARG
Sbjct: 365 VFTDTKREADEIAMTASIFRSSVAQVLHGDVSQRQRELTLQQFRDGRFSILVATDVAARG 424
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDS--------------- 467
LDI++V +I+Q PPRDV+ YIHR+GRTGRAG + + SDS
Sbjct: 425 LDIHEVDVIVQMRPPRDVDTYIHRAGRTGRAG-RSGTAVIMYSDSERGLLRALERGASIR 483
Query: 468 -------------------------------VIPAFKSAAEELLNNSGLSAAELLAKALA 496
V+P F+ AA+EL A A
Sbjct: 484 FEQAGPPTLERVLDVAAQNAARAVGEASTNRVVPYFQRAADELAAAQFEGDARRALAAAL 543
Query: 497 KAV-GYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKV--ELVKGMA 553
+ G T I+ RSLL+ T++L + TP G++RR K+ + + +
Sbjct: 544 AVISGRTHIEHRSLLTGEAGLRTLLLTMNRAGVTPRDVLGIVRRLSQSGKLFTDDIGKVR 603
Query: 554 LTADGNGAVFDVPVADLD 571
L D AVFDV V D
Sbjct: 604 LCRDPRQAVFDVSVEAAD 621
>gi|340502033|gb|EGR28753.1| hypothetical protein IMG5_169500 [Ichthyophthirius multifiliis]
Length = 727
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 200/518 (38%), Positives = 280/518 (54%), Gaps = 64/518 (12%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGPTKASKKT 182
L + I LFPIQ F + G D++G+ RTG GKTL + LP++E L +G K+
Sbjct: 78 LNKRNITYLFPIQEHCFKAIQAGKDVIGKDRTGSGKTLGYSLPLIEKLREDGFFGVIKRR 137
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVV 241
++P VL+L+PTREL QV + + +YGG Q +L+ G ++
Sbjct: 138 ---QSPYVLILVPTRELCIQVANEISSLKHSDNEFRVLQIYGGTDIREQTNQLRDGCEIA 194
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN------KV 295
+GTPGRI D +RGN+ LS+LK +LDEAD+ML GF +D+E I + ++ +
Sbjct: 195 VGTPGRIIDQFDRGNLILSNLKTVILDEADQMLNFGFQDDIEKIFKNIVESRESLGLPRT 254
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LLFSAT+PSWV IS K+L+ IDLV N K S V H+ + C R++ I
Sbjct: 255 QNLLFSATVPSWVHEISRKYLQEQNIVMIDLVRNNDNKTSQGVTHLAINCPFYQRTEAIG 314
Query: 355 DIIRCYSSGG--RTIIFTETKESASQL---ADLLPGARALHGDIQQSQREVTLAGFRSGK 409
D+I CY G R IIF ETK A+++ A++ + LHGDI Q QRE+T GFR GK
Sbjct: 315 DVILCYGGGAHSRVIIFCETKNEANEIMLKANIKQDLQVLHGDIPQKQREITFQGFREGK 374
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG--------------- 454
F LVATNVA+RGLDI +V LI+Q EPP++++ YIHR+GRTGRAG
Sbjct: 375 FKCLVATNVASRGLDIPEVDLIVQLEPPKELDTYIHRAGRTGRAGKTGVCITFFTKKQVG 434
Query: 455 ------------------------VEAAET-----ITQVSDSVIPAFKSAAEELLNNSGL 485
V+A++T + V+ V+ F+ +E+L+ G
Sbjct: 435 LIERIEKKCHIKMKIVGAPQPGDIVKASQTDIKKNLKTVNQEVVSMFQQVSEDLIQEFG- 493
Query: 486 SAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEE 544
E L++ALA GY E +K RSLL LE + T +++A I + + L+ E
Sbjct: 494 -PQEALSRALAYISGYIEGVKQRSLLCCLEGYCTYIVKAPHEIRGLGYIWNWLKSNFDIE 552
Query: 545 KVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAAN 582
V+ VKGM AD GAVFDV +D+ F N A+
Sbjct: 553 VVDRVKGMKKCADSLGAVFDVAESDIVKFEEYIQNIAD 590
>gi|168000743|ref|XP_001753075.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695774|gb|EDQ82116.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 793
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 221/557 (39%), Positives = 301/557 (54%), Gaps = 74/557 (13%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+SR I + + L +GI LFPIQ + + G DL+GRA+TG GKTLAF +PI+
Sbjct: 138 AISRLGIPDAVADALAKRGITQLFPIQRAVLEPAMQGRDLIGRAKTGTGKTLAFGIPIIN 197
Query: 170 SLT--NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
++ N + ++++G RAP LVL PTRELAKQV +F A L++ C+YGG
Sbjct: 198 NIIRENEENRVARRSG--RAPRALVLAPTRELAKQVEREF--MESAPMLSTICVYGGVAI 253
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
+Q+ L +G+D+ +GTPGRI D I RG++ L ++F VLDEAD+ML +GF EDVE IL
Sbjct: 254 SSQQRLLTRGVDIAVGTPGRIIDLINRGSLRLQEVRFLVLDEADQMLAVGFEEDVEQILE 313
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
++ N+ Q++LFSAT+P+WVK +S K+L D TIDLVG K + ++ +
Sbjct: 314 QM--PNQRQSMLFSATMPTWVKKLSRKYLH-DALTIDLVGESDEKLADRIKLYAVATVPQ 370
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAG 404
A+ ++ D+I Y GG+TI+FT+TK A +A + G ALHGDI QSQRE TL
Sbjct: 371 AKRSILNDLIAVYGKGGKTIVFTQTKRDADDVATAMARTLGCEALHGDISQSQREKTLNA 430
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE-------- 456
FR G F LVAT+VAARGLDI +V L+I E P D E ++HRSGRTGRAG +
Sbjct: 431 FREGNFSVLVATDVAARGLDIPNVDLVIHYEIPNDPETFVHRSGRTGRAGKDGTAILMYS 490
Query: 457 ------------------------------------AAETITQVSDSVIPAFKSAAEELL 480
A + I +V V F AEELL
Sbjct: 491 DRQTRTMRLIERDVGCKFTKISAPRVEDVLKASTESATDVIKRVHPEVAEVFMPTAEELL 550
Query: 481 NNSGLSAAELLAKALAKAVGYTEI-KSRSLLSSLEDHVTVVL---EAGKPIYTPSFAFGV 536
G A ALA G+T++ SRSLL+ E T+ L +P+ TP GV
Sbjct: 551 KEQG---PHAFAAALAHLAGFTQLPTSRSLLTHEEGVTTLRLVRPRGSRPM-TPRVVMGV 606
Query: 537 LRRFLPEEKVELVKGMALTAD--GNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPL 594
L P V+ V + + D +GAVFD+P S + V ++V + LP L
Sbjct: 607 LSDIWP-TAVDKVGKIKIVDDQKADGAVFDLPEDVAKELLSKPTRSGEV-IDVCQSLPRL 664
Query: 595 QEREQSRGRFGGGGRGG 611
+E E G GRGG
Sbjct: 665 EEDE------FGAGRGG 675
>gi|67605637|ref|XP_666695.1| DEAD/DEAH box helicase [Cryptosporidium hominis TU502]
gi|54657739|gb|EAL36467.1| DEAD/DEAH box helicase [Cryptosporidium hominis]
Length = 678
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 175/373 (46%), Positives = 249/373 (66%), Gaps = 25/373 (6%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ESE ++ RF +S RE L+S+GIE LFPIQA +F+ + D++G+A+TG GKTLAF
Sbjct: 9 ESEVDGSIDRFLLSDESREILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAF 68
Query: 164 VLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
VLP++E L G +K +GR P VLVLLPTRELA+QV +F++ G C +Y
Sbjct: 69 VLPVIERLLKKGKFDPNK---HGRRPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVY 125
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG+P + Q ++KKG+D+V+G PGR+ D IERG +++S + LDEAD+ML MGF E V
Sbjct: 126 GGSPEYPQIQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETV 185
Query: 283 ELILGKVED----------ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV-----G 327
+ I+ V NK Q LLFSAT+P WVK+I T+ + SD T+D+ G
Sbjct: 186 DKIIDCVRKETGDGETHSRQNKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHG 245
Query: 328 NEKMKAS--TNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLA---D 381
E+ +A+ + +RH+ + C+ R+ ++ DII Y+ G+ IIFTETK++A+++A +
Sbjct: 246 EEEDEAAARSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSE 305
Query: 382 LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE 441
+ + LHGDIQQ+QRE+ L F+ G++ LVAT+VAARGL I+DV ++IQ PPRD++
Sbjct: 306 ISKMCQVLHGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDID 365
Query: 442 AYIHRSGRTGRAG 454
YIHRSGRTGRAG
Sbjct: 366 TYIHRSGRTGRAG 378
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 486 SAAELLAKALAKAVGYT----EIKSRSLLSSLEDHVTVVLEAGK---PIYTPSFAFGVLR 538
A L+ L + G +I RS+L+ ED + ++ + PI + S+ + L+
Sbjct: 497 CAVRALSHCLLELTGINNDLKKIPHRSVLNGREDFKSYMITFNRLKEPIASNSYVWRCLK 556
Query: 539 RFL--PEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADN 579
L E +E ++ M L G+GAVFDVP+ + + S N
Sbjct: 557 SNLRGCEGLIERIQCMTLLKKGDGAVFDVPLGSIRQWESAISN 599
>gi|323509827|dbj|BAJ77806.1| cgd6_4860 [Cryptosporidium parvum]
Length = 390
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 175/373 (46%), Positives = 249/373 (66%), Gaps = 25/373 (6%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ESE ++ RF +S RE L+S+GIE LFPIQA +F+ + D++G+A+TG GKTLAF
Sbjct: 9 ESEVDGSIDRFPLSDESREILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAF 68
Query: 164 VLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
VLP++E L G +K +GR P VLVLLPTRELA+QV +F++ G C +Y
Sbjct: 69 VLPVIERLLKKGKFDPNK---HGRRPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVY 125
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG+P + Q ++KKG+D+V+G PGR+ D IERG +++S + LDEAD+ML MGF E V
Sbjct: 126 GGSPEYPQIQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETV 185
Query: 283 ELILGKVED----------ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV-----G 327
+ I+ V NK Q LLFSAT+P WVK+I T+ + SD T+D+ G
Sbjct: 186 DKIIDCVRKETGDGETHSRQNKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHG 245
Query: 328 NEKMKAS--TNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLA---D 381
E+ +A+ + +RH+ + C+ R+ ++ DII Y+ G+ IIFTETK++A+++A +
Sbjct: 246 EEEDEAAARSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSE 305
Query: 382 LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE 441
+ + LHGDIQQ+QRE+ L F+ G++ LVAT+VAARGL I+DV ++IQ PPRD++
Sbjct: 306 ISKMCQVLHGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDID 365
Query: 442 AYIHRSGRTGRAG 454
YIHRSGRTGRAG
Sbjct: 366 TYIHRSGRTGRAG 378
>gi|32399063|emb|CAD98303.1| DEAD/DEAH box helicase, possible [Cryptosporidium parvum]
gi|323508801|dbj|BAJ77294.1| cgd6_4860 [Cryptosporidium parvum]
Length = 688
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 175/373 (46%), Positives = 249/373 (66%), Gaps = 25/373 (6%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ESE ++ RF +S RE L+S+GIE LFPIQA +F+ + D++G+A+TG GKTLAF
Sbjct: 9 ESEVDGSIDRFPLSDESREILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAF 68
Query: 164 VLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
VLP++E L G +K +GR P VLVLLPTRELA+QV +F++ G C +Y
Sbjct: 69 VLPVIERLLKKGKFDPNK---HGRRPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVY 125
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG+P + Q ++KKG+D+V+G PGR+ D IERG +++S + LDEAD+ML MGF E V
Sbjct: 126 GGSPEYPQIQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETV 185
Query: 283 ELILGKVED----------ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV-----G 327
+ I+ V NK Q LLFSAT+P WVK+I T+ + SD T+D+ G
Sbjct: 186 DKIIDCVRKETGDGETHSRQNKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHG 245
Query: 328 NEKMKAS--TNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLA---D 381
E+ +A+ + +RH+ + C+ R+ ++ DII Y+ G+ IIFTETK++A+++A +
Sbjct: 246 EEEDEAAARSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSE 305
Query: 382 LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE 441
+ + LHGDIQQ+QRE+ L F+ G++ LVAT+VAARGL I+DV ++IQ PPRD++
Sbjct: 306 ISKMCQVLHGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDID 365
Query: 442 AYIHRSGRTGRAG 454
YIHRSGRTGRAG
Sbjct: 366 TYIHRSGRTGRAG 378
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 486 SAAELLAKALAKAVGYT----EIKSRSLLSSLEDHVTVVLEAGK---PIYTPSFAFGVLR 538
A L+ L + G +I RS+L+ ED + ++ + PI + S+ + L+
Sbjct: 497 CAVRALSHCLLELTGINNDLKKIPHRSVLNGREDFKSYMITFNRLKEPIASNSYVWRCLK 556
Query: 539 RFL--PEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADN 579
L E +E ++ M L G+GAVFDVP+ + + S N
Sbjct: 557 SNLRGCEGLIERIQCMTLLKKGDGAVFDVPLGSIRQWESAISN 599
>gi|343470250|emb|CCD17000.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 633
Score = 327 bits (837), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 204/542 (37%), Positives = 288/542 (53%), Gaps = 68/542 (12%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F +S + + L+ +GI SLFP+QA+TF+ ++ G D++ +ARTG GKTLAF +PI+E L
Sbjct: 49 SDFDLSPGIVKALEKQGITSLFPVQALTFEAIIRGEDVLVQARTGSGKTLAFGIPIVEKL 108
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
K GR PS ++ PTRELA QV + G L LYGG Y QE
Sbjct: 109 N----KIEGPLPRGRGPSAVIFCPTRELAIQVRDVLSSISG--DLVVAALYGGVAYSIQE 162
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L G+D+V+ TPGR KD +E+G + +K LDEAD ML +GF ED+EL+L +V +
Sbjct: 163 RVLHSGVDIVVATPGRAKDFLEKGTLRFDRVKMACLDEADHMLDIGFKEDIELLLQRVAE 222
Query: 292 AN-------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
N QTLLFSAT+P WV S F+ +KK ID+VG +M+A+ ++ C
Sbjct: 223 HNGSTYERCNHQTLLFSATVPDWVHTCS--FISKNKKFIDMVGQGEMRAANTIKFFRRKC 280
Query: 345 SSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLA--DLLPGARALHGDIQQSQREVT 401
S S ++ D+++ YS GRT+IFT TK+ L+ + ++ LHGD+QQ QRE T
Sbjct: 281 GFSEVSSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINNTKLDSQCLHGDMQQDQREST 340
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
+ FR F L+AT+VAARGLD+ V L+IQC PP D++A+IHR+GRTGRAG
Sbjct: 341 MKSFRENMFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVL 400
Query: 455 -------------------------------------VEAAETITQVSDSVIPAFKSAAE 477
+AAE + +V S F A
Sbjct: 401 LHQPRDEHIVERIERHANIKFEVLPAPTREEILKAVARDAAEDMARVERSATNLFMEQAA 460
Query: 478 ELLNNSGLSAAELLAKALAKAVGYT-EIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGV 536
ELL ++ E+LA A+A GYT I R L++ + T+ + + + P F +
Sbjct: 461 ELLKDA--DPTEILASAIAVMSGYTSSITKRGLITGAKGSATIQMLGQRSLPIPVFC-SI 517
Query: 537 LRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 596
LR L +E + + L D G VFDVP ++ R A + L V++ LPP+
Sbjct: 518 LRNNLGDELFTRCRDITLLQDAPGCVFDVPEEFVE--RILATPVRGMELSVIESLPPIIA 575
Query: 597 RE 598
RE
Sbjct: 576 RE 577
>gi|342181264|emb|CCC90744.1| putative nucleolar RNA helicase II [Trypanosoma congolense IL3000]
Length = 633
Score = 327 bits (837), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 204/542 (37%), Positives = 288/542 (53%), Gaps = 68/542 (12%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F +S + + L+ +GI SLFP+QA+TF+ ++ G D++ +ARTG GKTLAF +PI+E L
Sbjct: 49 SDFDLSPGIVKALEKQGITSLFPVQALTFEAIIRGEDVLVQARTGSGKTLAFGIPIVEKL 108
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
K GR PS ++ PTRELA QV + G L LYGG Y QE
Sbjct: 109 N----KIEGPLPRGRGPSAVIFCPTRELAIQVRDVLSSISG--DLVVAALYGGVAYSIQE 162
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L G+D+V+ TPGR KD +E+G + +K LDEAD ML +GF ED+EL+L +V +
Sbjct: 163 RVLHSGVDIVVATPGRAKDFLEKGTLRFDRVKMACLDEADHMLDIGFKEDIELLLQRVAE 222
Query: 292 AN-------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
N QTLLFSAT+P WV S F+ +KK ID+VG +M+A+ ++ C
Sbjct: 223 HNGSTYERCNHQTLLFSATVPDWVHTCS--FISKNKKFIDMVGQGEMRAANTIKFFRRKC 280
Query: 345 SSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLA--DLLPGARALHGDIQQSQREVT 401
S S ++ D+++ YS GRT+IFT TK+ L+ + ++ LHGD+QQ QRE T
Sbjct: 281 GFSEVSSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINNTKLDSQCLHGDMQQDQREST 340
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------- 454
+ FR F L+AT+VAARGLD+ V L+IQC PP D++A+IHR+GRTGRAG
Sbjct: 341 MKSFRENMFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVL 400
Query: 455 -------------------------------------VEAAETITQVSDSVIPAFKSAAE 477
+AAE + +V S F A
Sbjct: 401 LHQPRDEHIVERIERHANIKFEVLPAPTREEILKAVARDAAEDMARVERSATNLFMEQAA 460
Query: 478 ELLNNSGLSAAELLAKALAKAVGYT-EIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGV 536
ELL ++ E+LA A+A GYT I R L++ + T+ + + + P F +
Sbjct: 461 ELLKDA--DPTEILASAIAVMSGYTSSITKRGLITGAKGSATIQMLGQRSLPIPVFC-SI 517
Query: 537 LRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 596
LR L +E + + L D G VFDVP ++ R A + L V++ LPP+
Sbjct: 518 LRNNLGDELFTRCRDITLLQDAPGCVFDVPEEFVE--RILATPVRGMELSVIESLPPIIA 575
Query: 597 RE 598
RE
Sbjct: 576 RE 577
>gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115]
gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti
VCD115]
Length = 602
Score = 327 bits (837), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 222/552 (40%), Positives = 304/552 (55%), Gaps = 84/552 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
I+ L +L +GI PIQA + + L G D++GRARTG GKTLAF LPI++ L
Sbjct: 7 IAPELAARLAERGITEASPIQAESLPLTLAGRDMIGRARTGTGKTLAFALPIIQKLEPSR 66
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+A R P +V+ PTRELAKQV E+F G VGLT+ +YGGA Y QE L+
Sbjct: 67 ERA-------RPPRAIVVAPTRELAKQVAEEFSKSG--VGLTTVTVYGGASYAPQENALR 117
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
+G+DVV+GTPGR+ DH+ERGN+DLS+++F VLDEADEML +GF + +E IL K D+
Sbjct: 118 RGVDVVVGTPGRLIDHLERGNLDLSAVEFAVLDEADEMLSVGFADAIETILQKTPDSR-- 175
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSATL + + +S +L+ + +D+VG K +A+ V H+ + S R++V+ D
Sbjct: 176 QTMLFSATLNNDINRLSRNYLR-EPVIVDMVGEGKSQAAQTVEHLKVRVGRS-RTRVLAD 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
++ Y+ + I+FT TK A +LA+ L A ALHGD+ QSQRE L FRSG+
Sbjct: 234 LLTIYNP-EKAIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVG 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG----------------- 454
LVAT+VAARGLDI +V L++Q P+D E+Y+HRSGRTGRAG
Sbjct: 293 VLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRENREV 352
Query: 455 ---------------------VEA------AETITQVSDSVIPAFKSAAEELLNNSGLSA 487
V+A A+ + +V V F++ AE L + GL A
Sbjct: 353 MGLERITGVRFIERPLPTPKEVQAASAKTSADMVRKVDSGVAATFQAEAERLFSELGLEA 412
Query: 488 AELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEA-----GKPIYTPSFAFGVLRRFL 541
L +ALAK G TE K+ SLLS E T++L + + + A V R L
Sbjct: 413 ---LTRALAKISGVTEPTKAASLLSGEEGLTTLILHGERMSIARTVALLARAGDVDTRRL 469
Query: 542 PEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE---RE 598
KV +G G V DVP L + V +EV ++LP L E RE
Sbjct: 470 G--KVRQWRG--------GTVADVPSEYLQKLLAANPLEGEVQIEVAQELPELFEQAVRE 519
Query: 599 QSRGRFGGGGRG 610
+ G + GG RG
Sbjct: 520 RREGGYQGGNRG 531
>gi|360044772|emb|CCD82320.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 710
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 220/612 (35%), Positives = 307/612 (50%), Gaps = 101/612 (16%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P S F I+ + EKL+++ I LFP+Q T+D++ G D V ARTG GKTLAF LP+
Sbjct: 95 PGDFSNFNIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSLPL 154
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD---VYGGAVGLTSCCLYGG 224
+ SL G + S+ + +P VLVL PTREL Q+ DF+ V+G + +TS +YGG
Sbjct: 155 VNSLIKG--QGSRPS----SPVVLVLAPTRELVTQIATDFESISVHG--IKVTS--VYGG 204
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L++G +V+G PGR+ D +E+G + LSS++ VLDE D ML MGF +DVE
Sbjct: 205 VPYRPQCDALRQGTHIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVES 264
Query: 285 ILGKV---EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341
IL K+ E++ K QTLLFSAT+PSWV IS +L D + L+ ++ K STNV H+
Sbjct: 265 ILSKIYNSENSEKPQTLLFSATMPSWVSEISRCYLSDDALHLSLIDEQETKTSTNVTHLA 324
Query: 342 LPCSSSARSQVIPDIIRCYSSG--GRTIIFTETKESASQLA--DLLPG-ARALHGDIQQS 396
L C +R+ + D+I+ Y G R I+F E K+ A +L+ D + G LHG + Q
Sbjct: 325 LLCPYESRAATLSDVIKVYCKGRESRCIVFCERKKDADELSASDAMSGDCHVLHGSVPQD 384
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH------RSGRT 450
+RE+ L FR GK+ TL+ TNVAARGLD+ +V L+IQC PPRD+E YIH R+ R+
Sbjct: 385 KRELVLQRFRDGKYRTLLTTNVAARGLDVPNVDLVIQCHPPRDIEDYIHRSGRTGRADRS 444
Query: 451 GR-------------------AGVE----AAETITQVS-------------------DSV 468
G AG+ +A TI ++ +
Sbjct: 445 GTSICFYTYKERSMLSRIENMAGITFRRISAPTINDITTAWGEEILKTFSNVPKSTWSTF 504
Query: 469 IPAFKSAAEELLNNSGLSAAE--------------------------LLAKALAKAVGYT 502
+P S A +L NS + +L ALA G
Sbjct: 505 VPLALSIANQLAQNSKTGKVKKDSCDDLGVDDDKTPGRKPKSKDILRVLCCALACLSGKE 564
Query: 503 -EIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGA 561
+SRS L++ LE + AF LR LPE V V ++ G
Sbjct: 565 GAFESRSALTAQIGKTAYKLELNFIARSKGLAFATLRNHLPENIVNSVHSLSFIRGKMGY 624
Query: 562 VFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRGGFGGRGGNRFS 621
VFD+P + +S N A L +L ++P L+E E F GR G G +RF+
Sbjct: 625 VFDLPSEHDEFVKSTWPNDAQAKLSLLSKIPELEEEE-----FFNQGRSGNYGSWQSRFN 679
Query: 622 GGRGGGFSDRRN 633
GG F N
Sbjct: 680 GGSRQSFKRSYN 691
>gi|429220700|ref|YP_007182344.1| DNA/RNA helicase [Deinococcus peraridilitoris DSM 19664]
gi|429131563|gb|AFZ68578.1| DNA/RNA helicase, superfamily II [Deinococcus peraridilitoris DSM
19664]
Length = 570
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 233/587 (39%), Positives = 315/587 (53%), Gaps = 91/587 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
I+ L E L ++GI + PIQ + L G DL+GRARTG GKTLAFVLPI L
Sbjct: 7 IAPHLAEALAARGISAPSPIQIESLPHTLAGRDLIGRARTGTGKTLAFVLPITTRL---- 62
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+AS+++G R P ++L PTRELAKQV + + A LT+ +YGGA Y QE L
Sbjct: 63 -EASRQSG--RGPRAIILAPTRELAKQVAAEAE--QSARHLTTVTVYGGAAYGPQEKALM 117
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
+G+D+V+GTPGRI DH+ERGN+ L ++ VLDEADEML +GF + +E IL
Sbjct: 118 RGVDIVVGTPGRIIDHLERGNLRLDDVQIAVLDEADEMLSVGFADAIEQILRSAP--KDR 175
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSATLPS V+ ++ ++ + D +DLVG +AS V H+ + R++V+ D
Sbjct: 176 QTMLFSATLPSGVERLARQY-QRDPVLVDLVGERASQASQTVTHLAIKVGR-VRTRVLAD 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
++ Y+ R I+FT TK A +L+ L A ALHGD+ QSQRE L FR+G+
Sbjct: 234 LLTVYNPE-RAIVFTRTKREADELSLELIHRGIEAEALHGDLAQSQRERALGAFRAGRVR 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE--------------- 456
LVAT+VAARGLDI +V L++Q P D EAY+HRSGRTGRAG E
Sbjct: 293 VLVATDVAARGLDIPEVDLVVQYHMPNDTEAYVHRSGRTGRAGREGTAIVLYGDREGREL 352
Query: 457 -----------------------------AAETITQVSDSVIPAFKSAAEELLNNSGLSA 487
AA+ + + + + +FK AE+L G+ A
Sbjct: 353 SNLERATGVRFTPRAVPTAKEVREASARTAADAVRHIENDLGASFKEEAEKLFAELGVDA 412
Query: 488 AELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEE-- 544
LA+ALAK G T S SLLS E+ TV+L A + + + A ++ R L E
Sbjct: 413 ---LARALAKIAGVTAPATSASLLSGEENMTTVILHAER--MSVARAVALIARGLDIESR 467
Query: 545 ---KVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPL---QERE 598
KV L +G GAV D+P A++ + V +EV +LP L ERE
Sbjct: 468 SLGKVRLWRG--------GAVADIPAANIPTLLEKSPLEGEVRVEVADELPELFDMPERE 519
Query: 599 QSRGRFGGGGRGGFGGRGGNRFSGGRGGGFSDRRNDRFSGGFRGSKG 645
GR+ G R G G R +R GRGG S R+ GG R +G
Sbjct: 520 SRGGRY--GDRDGRGARSDSR---GRGGYAS--RDGESRGGSRDGRG 559
>gi|47827092|dbj|BAD21122.1| ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare]
gi|326532610|dbj|BAK05234.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 764
Score = 325 bits (833), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 219/561 (39%), Positives = 309/561 (55%), Gaps = 75/561 (13%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+SR + L L+ +GI LFPIQ L+G DL+ RA+TG GKTLAF +P+++
Sbjct: 92 AISRLGLPAQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIK 151
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ + G GR P LVL PTRELAKQV ++ + A L++ C+YGG Y+
Sbjct: 152 QIIE--QDEGRTPGRGRIPRALVLAPTRELAKQVEKE--IMESAPKLSTVCVYGGVSYNT 207
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGR+ D I G++ L +++ VLDEAD+ML +GF EDVE IL ++
Sbjct: 208 QQNALSRGVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQL 267
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ Q++LFSAT+PSWVK +S ++L ++ TIDLVG++ K + ++ +P +++++
Sbjct: 268 --PAERQSMLFSATMPSWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLFAIPLTTTSK 324
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
++ D+I Y+ GG+TI+FT TK A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 325 RTILSDLITVYAKGGKTIVFTRTKRDADEVSLALTTSIASEALHGDISQHQRERTLNGFR 384
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------ 454
GKF LVAT+VA+RGLDI +V LII E P D E ++HRSGRTGRAG
Sbjct: 385 QGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGNAILMFTTN 444
Query: 455 ----VEAAE-------------TITQVSDS---------------VIPAFKSAAEELLNN 482
V++ E T+ +V DS I F AAE L
Sbjct: 445 QRRTVKSLERDVGCKFEFIGPPTMEEVLDSSAEHVIATLRGVHPESIQYFVPAAERLSQE 504
Query: 483 SGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVL----EAGKPIYTPSFAFGVL 537
G +A LA ALA G+++ SRSL+S + VT+ L E + ++P G L
Sbjct: 505 LGPTA---LASALAHLSGFSQPPSSRSLISHEQGSVTLQLTRDPEYARGFFSPRSVTGFL 561
Query: 538 RRFLPEEKVELVKGMALTADG--NGAVFDVP---VADLDLFRSGADNAANVSLEVLKQLP 592
P + V + L AD GAVFD+P DL N +L + +LP
Sbjct: 562 SDVSP-SAADAVGKIYLIADERVQGAVFDLPEEIAKDLLTMELPPGN----TLSKVTKLP 616
Query: 593 PLQE---REQSRGRFGGGGRG 610
LQ+ S GRF RG
Sbjct: 617 VLQDDGPATDSYGRFSNSDRG 637
>gi|414873743|tpg|DAA52300.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 743
Score = 325 bits (833), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 225/563 (39%), Positives = 313/563 (55%), Gaps = 72/563 (12%)
Query: 101 ERGESEHPN-AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
E GE ++ A++R + L L+ +GI LFPIQ L+G DL+ RA+TG GK
Sbjct: 79 EAGEGDNEELAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGK 138
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
TLAF +P+++ L + T GR P VLVL PTRELAKQV ++ + A L +
Sbjct: 139 TLAFGIPMIKQLIE--QDDGRITRRGRTPRVLVLAPTRELAKQVEKE--IKESAPKLGTV 194
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
C+YGG Y+ Q+ L +G+DVV+GTPGRI D I G++ L +++ VLDEAD+ML +GF
Sbjct: 195 CVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFE 254
Query: 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339
EDVE IL ++ Q++LFSAT+PSWVK +S ++L ++ TIDLVG++ K + ++
Sbjct: 255 EDVETILQQLPAGR--QSMLFSATMPSWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKL 311
Query: 340 IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQS 396
+P +++++ V+ D+I Y+ GG+TI+FT TK+ A +++ L + ALHGDI Q
Sbjct: 312 YAIPLTTTSKRTVLSDLITVYAKGGKTIVFTRTKKDADEVSLALTNSIASEALHGDISQH 371
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
QRE TL GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG +
Sbjct: 372 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG-K 430
Query: 457 AAETITQVSDSVIPAFKS---------------AAEELLNNSG----------------- 484
A I + S KS + EE+L +S
Sbjct: 431 AGTAILMFTSSQKRTVKSLERDVGCNFEFISPPSIEEVLESSAEHVIATLRGVHPESTKY 490
Query: 485 -LSAAE---------LLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEA----GKPIYT 529
L AAE LA ALA G+++ SRSL+S + VT+ L G+ ++
Sbjct: 491 FLGAAEKLTEELGPHALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTREQGFGRGFFS 550
Query: 530 PSFAFGVLRRFLPEEKVELVKGMALTADGN--GAVFDVP---VADLDLFRSGADNAANVS 584
P G L E+ K + LTAD N GAVFD+P DL N +
Sbjct: 551 PRSVTGFLSDVCSAAADEVGK-IYLTADENVQGAVFDLPEEIAKDLLTMELPPGN----T 605
Query: 585 LEVLKQLPPLQE---REQSRGRF 604
L + +LP LQ+ S GRF
Sbjct: 606 LTKISKLPALQDDGPATDSYGRF 628
>gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]
Length = 744
Score = 324 bits (831), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 225/563 (39%), Positives = 313/563 (55%), Gaps = 72/563 (12%)
Query: 101 ERGESEHPN-AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
E GE ++ A++R + L L+ +GI LFPIQ L+G DL+ RA+TG GK
Sbjct: 79 EAGEGDNEELAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGK 138
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
TLAF +P+++ L + T GR P VLVL PTRELAKQV ++ + A L +
Sbjct: 139 TLAFGIPMIKQLIE--QDDGRITRRGRTPRVLVLAPTRELAKQVEKE--IKESAPKLGTV 194
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
C+YGG Y+ Q+ L +G+DVV+GTPGRI D I G++ L +++ VLDEAD+ML +GF
Sbjct: 195 CVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFE 254
Query: 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339
EDVE IL ++ Q++LFSAT+PSWVK +S ++L ++ TIDLVG++ K + ++
Sbjct: 255 EDVETILQQLPAGR--QSMLFSATMPSWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKL 311
Query: 340 IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQS 396
+P +++++ V+ D+I Y+ GG+TI+FT TK+ A +++ L + ALHGDI Q
Sbjct: 312 YAIPLTATSKRTVLSDLITVYAKGGKTIVFTRTKKDADEVSLALTNSIASEALHGDISQH 371
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
QRE TL GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG +
Sbjct: 372 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG-K 430
Query: 457 AAETITQVSDSVIPAFKS---------------AAEELLNNSG----------------- 484
A I + S KS + EE+L +S
Sbjct: 431 AGTAILMFTSSQKRTVKSLERDVGCNFEFISPPSIEEVLESSAEHVIATLRGVHPESTKY 490
Query: 485 -LSAAE---------LLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEA----GKPIYT 529
L AAE LA ALA G+++ SRSL+S + VT+ L G+ ++
Sbjct: 491 FLGAAEKLTEELGPHALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTREQGFGRGFFS 550
Query: 530 PSFAFGVLRRFLPEEKVELVKGMALTADGN--GAVFDVP---VADLDLFRSGADNAANVS 584
P G L E+ K + LTAD N GAVFD+P DL N +
Sbjct: 551 PRSVTGFLSDVCSAAADEVGK-IYLTADENVQGAVFDLPEEIAKDLLTMELPPGN----T 605
Query: 585 LEVLKQLPPLQE---REQSRGRF 604
L + +LP LQ+ S GRF
Sbjct: 606 LTKISKLPALQDDGPATDSYGRF 628
>gi|390472670|ref|XP_002756342.2| PREDICTED: nucleolar RNA helicase 2 [Callithrix jacchus]
Length = 797
Score = 324 bits (831), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 230/615 (37%), Positives = 313/615 (50%), Gaps = 97/615 (15%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
+++E E VE++E A S F IS + LK +G+ LFPIQA TF V +G D
Sbjct: 219 SEMEQEIPVEQKE-------GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYNGKD 271
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF- 207
L+ +ARTG GKT +F +P++E L G + K+ GR P VLVL PTRELA QV +DF
Sbjct: 272 LIAQARTGTGKTFSFAIPLIEKLL-GDLQDRKR---GRPPQVLVLAPTRELANQVSKDFS 327
Query: 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267
D+ L+ C YGG PY Q +++ G L S +
Sbjct: 328 DI---TKKLSVACFYGGTPYGGQFERMRNG---------------------LISWQCCSW 363
Query: 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG 327
D +E + G + + + QTLLFSAT P WV +++ K++KS + +DL+G
Sbjct: 364 DGVEENFKCGHT--------RKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIG 415
Query: 328 NEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLAD---LL 383
+ K + V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+ +
Sbjct: 416 KKTQKTAITVEHLAIQCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIK 475
Query: 384 PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DVE+Y
Sbjct: 476 QDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESY 535
Query: 444 IHRSGRTGRAG--------------------------------VEAAETITQVS------ 465
IHRSGRTGRAG V +A I + S
Sbjct: 536 IHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIR 595
Query: 466 --DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTV 519
DSV P FK +AE+L+ G A E LA ALA G T + RSL++S VT+
Sbjct: 596 LLDSVPPTAISHFKQSAEKLIEEKG--AVEALAAALAHISGATSVDQRSLINSNVGFVTM 653
Query: 520 VLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADN 579
+L+ + S+A+ L+ L EE VKGM G FDVP A + + +
Sbjct: 654 ILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWRD 713
Query: 580 AANVSLEVLKQLPPLQEREQSRGRFGG---GGRGGFGGRGGNRFSGGRGGGFSDRRNDRF 636
+ L V + P L+ + G F G G R G R GNR G+ GG R R
Sbjct: 714 SRRWQLSVATEQPELEGPREGYGGFRGQREGSRSFRGQRDGNRRFRGQRGGNRGPRGQRS 773
Query: 637 SGGFRGSKGRGGGNR 651
GG R ++ + G +
Sbjct: 774 GGGNRSNRSQDKGQK 788
>gi|256083212|ref|XP_002577843.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 794
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 217/609 (35%), Positives = 302/609 (49%), Gaps = 95/609 (15%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P S F I+ + EKL+++ I LFP+Q T+D++ G D V ARTG GKTLAF LP+
Sbjct: 179 PGDFSNFNIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSLPL 238
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
+ SL G + S+ + +P VLVL PTREL Q+ DF+ G+ +YGG PY
Sbjct: 239 VNSLIKG--QGSRPS----SPVVLVLAPTRELVTQIATDFESIS-VHGIKVTSVYGGVPY 291
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q L++G +V+G PGR+ D +E+G + LSS++ VLDE D ML MGF +DVE IL
Sbjct: 292 RPQCDALRQGTHIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVESILS 351
Query: 288 KV---EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
K+ E++ K QTLLFSAT+PSWV IS +L D + L+ ++ K STNV H+ L C
Sbjct: 352 KIYNSENSEKPQTLLFSATMPSWVSEISRCYLSDDALHLSLIDEQETKTSTNVTHLALLC 411
Query: 345 SSSARSQVIPDIIRCYSSG--GRTIIFTETKESASQLA--DLLPG-ARALHGDIQQSQRE 399
+R+ + D+I+ Y G R I+F E K+ A +L+ D + G LHG + Q +RE
Sbjct: 412 PYESRAATLSDVIKVYCKGRESRCIVFCERKKDADELSASDAMSGDCHVLHGSVPQDKRE 471
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH------RSGRTG-- 451
+ L FR GK+ TL+ TNVAARGLD+ +V L+IQC PPRD+E YIH R+ R+G
Sbjct: 472 LVLQRFRDGKYRTLLTTNVAARGLDVPNVDLVIQCHPPRDIEDYIHRSGRTGRADRSGTS 531
Query: 452 -----------------RAGVE----AAETITQVS-------------------DSVIPA 471
AG+ +A TI ++ + +P
Sbjct: 532 ICFYTYKERSMLSRIENMAGITFRRISAPTINDITTAWGEEILKTFSNVPKSTWSTFVPL 591
Query: 472 FKSAAEELLNNSGLSAAE--------------------------LLAKALAKAVGYT-EI 504
S A +L NS + +L ALA G
Sbjct: 592 ALSIANQLAQNSKTGKVKKDSCDDLGVDDDKTPGRKPKSKDILRVLCCALACLSGKEGAF 651
Query: 505 KSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFD 564
+SRS L++ LE + AF LR LPE V V ++ G VFD
Sbjct: 652 ESRSALTAQIGKTAYKLELNFIARSKGLAFATLRNHLPENIVNSVHSLSFIRGKMGYVFD 711
Query: 565 VPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRGGFGGRGGNRFSGGR 624
+P + +S N A L +L ++P L+E E F GR G G +RF+GG
Sbjct: 712 LPSEHDEFVKSTWPNDAQAKLSLLSKIPELEEEE-----FFNQGRSGNYGSWQSRFNGGS 766
Query: 625 GGGFSDRRN 633
F N
Sbjct: 767 RQSFKRSYN 775
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 115/192 (59%), Gaps = 7/192 (3%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P S F I+ + EKL+++ I LFP+Q T+D++ G D V ARTG GKTLAF LP+
Sbjct: 8 PGDFSNFNIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSLPL 67
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
+ SL G + S+ + +P VLVL PTREL Q+ DF+ G+ +YGG PY
Sbjct: 68 VNSLIKG--QGSRPS----SPVVLVLAPTRELVTQIATDFESIS-VHGIKVTSVYGGVPY 120
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q L++G +V+G PGR+ D +E+G + LSS++ VLDE D ML MGF +DVE+ G
Sbjct: 121 RPQCDALRQGTHIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVEISPG 180
Query: 288 KVEDANKVQTLL 299
+ N ++
Sbjct: 181 DFSNFNIADVII 192
>gi|224000281|ref|XP_002289813.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220975021|gb|EED93350.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 466
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 200/475 (42%), Positives = 266/475 (56%), Gaps = 80/475 (16%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT----------- 172
L KGI P+QA VL G D++GR+RTG GKTLAF +P L +
Sbjct: 1 LSHKGITHFTPVQAKAMSPVLAGRDVIGRSRTGTGKTLAFGMPALTRMVERAKEKGNLEQ 60
Query: 173 --NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+G T+ K GR PS++VL PTRELA+QV ++ +GL S C +GG Y Q
Sbjct: 61 GRDGSTRMRK----GRLPSMIVLCPTRELARQVEDELSAVCKPLGLFSSCFHGGVSYDPQ 116
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L++G+DV++GTPGR+ DHI+RGN+DLS VLDEADEML MGF EDVE+IL V
Sbjct: 117 ARALRQGVDVIVGTPGRVIDHIDRGNLDLSECDTVVLDEADEMLNMGFAEDVEVILEGVG 176
Query: 291 DAN--KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK-MKASTNVRH--IVLPCS 345
N K Q LLFSAT P WVK I + + + D +ID+ G + + ++ VRH I +P
Sbjct: 177 SKNREKTQCLLFSATTPPWVKEIGSHY-QRDVLSIDITGEQTGSRVASTVRHTAIQVPFG 235
Query: 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLAD----LLPGARALHGDIQQSQREVT 401
+ A+ ++ DII + G+TI+FTETK+ A +L A+A+HGDI Q QR+ T
Sbjct: 236 ADAKKAILEDIIALF---GKTIVFTETKKEADELVSGSVFKTLSAQAIHGDIGQKQRDAT 292
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE----- 456
LA FR+G F LVAT+VAARG+DI DV L+IQ EPPRDV+ Y+HRSGRTGRAG
Sbjct: 293 LAAFRAGAFNVLVATDVAARGIDIKDVDLVIQFEPPRDVDTYVHRSGRTGRAGASGISVL 352
Query: 457 -------------------------------------AAET----ITQVSDSVIPAFKSA 475
AA+T V+D FK A
Sbjct: 353 LFQQNQARDIVRIEKSLGHGFKFELLGPPSTEAALNAAAKTSALACRGVADETAAHFKDA 412
Query: 476 AEELLNNSGLSAAELLAKALAKAVGYT-EIKSRSLLSSLEDHVTVVL--EAGKPI 527
A LL +SG S +++A+ LA T ++ SRSLL+ E + TV + G+P+
Sbjct: 413 AVSLLASSG-SPEDVVARCLAAIARRTVQVNSRSLLTGEEGYATVEMTNSKGRPV 466
>gi|308804011|ref|XP_003079318.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
gi|116057773|emb|CAL53976.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
Length = 683
Score = 322 bits (824), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 209/547 (38%), Positives = 294/547 (53%), Gaps = 63/547 (11%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P V F +S + L+ +G+++LFPIQ +DG D+VGRARTG GKTLAF LP+
Sbjct: 24 PADVDNFGMSETTVQALRKRGVDALFPIQQAVLRPAMDGQDVVGRARTGTGKTLAFSLPV 83
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
+E L + R P +VL PTRELAKQV + ++ A L + C+YGG P
Sbjct: 84 IEKLLS--NGRGSGGRGYRNPKCIVLAPTRELAKQVENE--IFITAPTLDTACVYGGTPI 139
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE KL++G+D+V+GTPGRI D + R +DLS ++F VLDEAD+ML +GF EDVE IL
Sbjct: 140 GQQESKLRRGVDIVVGTPGRIMDLMNRRALDLSEIEFVVLDEADQMLNVGFEEDVEAILH 199
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
QT LFSAT+P WVK I+ KFLK+ +DLVG+ K K + + + S +
Sbjct: 200 DCPAGR--QTFLFSATMPQWVKQITKKFLKAQHVVVDLVGDNKQKVADTIDLMTCAVSQT 257
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL---PGARALHGDIQQSQREVTLAG 404
+R+ ++ D++ Y+ + I FT+TK +A +L L LHGDI Q+QRE TL
Sbjct: 258 SRTSIVMDLVTVYAKDKKCICFTQTKRAADELTAALGKRVSCEVLHGDIAQAQRERTLQR 317
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG---------- 454
FR +F L+AT+VAARGLDI+DV L+I E P DVE+++HR GRTGRAG
Sbjct: 318 FRDNRFTVLIATDVAARGLDISDVDLVIHYELPNDVESFVHRCGRTGRAGQQGAAIAMYT 377
Query: 455 ----------------------------------VEAAETITQVSDSVIPAFKSAAEELL 480
V A+ +++V ++P F A++LL
Sbjct: 378 DRESYMIRRIQKETGCDFRAIDIPSSTEVMDACAVTASNALSKVDSELLPFFAPTAKKLL 437
Query: 481 -NNSGLSAAELLAKALAKAVGYTEI-KSRSLLSSLEDHVT-VVLEAGKPIYTPSFAFGVL 537
++G ++LA ALA G TE RSLL+ + T +V+++ P+ G L
Sbjct: 438 PEDAGEDITQILAAALAAISGQTEAPPPRSLLTGAPNSCTYMVVDSAD--SEPAIRAGDL 495
Query: 538 RRFLPEEKVELVKG---MALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPL 594
R L E +L G + A+ NG FD+ A + + D L V +LP L
Sbjct: 496 LRALTEIDRKLADGCGKIRFLANKNGLCFDIDAAYMSDLETVTD-LNGFDLSVCTKLPDL 554
Query: 595 QEREQSR 601
EQ+R
Sbjct: 555 MA-EQTR 560
>gi|226468796|emb|CAX76426.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
gi|226468798|emb|CAX76427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
Length = 622
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 221/619 (35%), Positives = 304/619 (49%), Gaps = 99/619 (15%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F I + ++L ++ I LFP+Q T+D + G D V ARTG GKTLAF LP++ L
Sbjct: 12 SNFNIDDAIIKRLHARNIFELFPVQFKTYDAISSGKDAVVLARTGTGKTLAFSLPLVNQL 71
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD---VYGGAVGLTSCCLYGGAPYH 228
++ + +P VLVL PTREL Q+ DF+ V+G + +TS +YGG PY
Sbjct: 72 IK------RQESFKPSPVVLVLAPTRELVTQIATDFESICVHG--IKVTS--VYGGVPYK 121
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L+ G VV+G PGR+ D I++G + LSS++ VLDE D ML MGF +DVE IL
Sbjct: 122 PQCNALRNGTHVVVGAPGRVIDLIDKGILKLSSVQHVVLDEVDRMLDMGFSKDVEKILAD 181
Query: 289 V---EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
+ E + K QTLLFSAT+PSWV IS +L +D + L+ ++ KASTNV H+ L C
Sbjct: 182 IYNNETSKKPQTLLFSATMPSWVSDISRNYLSNDALHLSLIDEQETKASTNVTHLALLCP 241
Query: 346 SSARSQVIPDIIR--CYSSGGRTIIFTETKESASQLA--DLLP-GARALHGDIQQSQREV 400
+R+ + D+I+ C S R I+F E K+ A +LA ++P LHGD+ Q +RE
Sbjct: 242 YESRAATLSDVIKVYCKSRESRCIVFCERKKDADELAASSVMPTDCHVLHGDVPQDKREF 301
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA------- 453
L FR GK+ TL+ TNVAARGLD+ V L+IQC PPRDVE YIHRSGRTGRA
Sbjct: 302 VLQKFRDGKYRTLLTTNVAARGLDVPHVDLVIQCHPPRDVEDYIHRSGRTGRADRSGTSI 361
Query: 454 -------------------------------------GVEAAETITQVSDSVIPAFK--- 473
G E ++T + + S F
Sbjct: 362 CFYTYKERSMLSKIENMAGITFRRISAPTIHDITAAWGEEISKTFSTIPKSTWSTFMPLA 421
Query: 474 -SAAEELLNNSGL------SAAELLA-------KALAKAVGYTEIKSRSLLS----SLED 515
S A++L NS S +L A K +K V + + + LS ++E+
Sbjct: 422 FSVADQLSQNSNSKKIKTNSLDDLKAGSKACDRKPKSKDVLHALCCALACLSGKEGAIEN 481
Query: 516 HVTVVLEAGKPIY---------TPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVP 566
+ + GK Y + + AF LR +LPE V + ++ G VFD+P
Sbjct: 482 RSALTAQNGKTAYKLELNFIARSKALAFASLRNYLPENVVNSINSLSFIRGKMGYVFDLP 541
Query: 567 VADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRGGFGGRGGNRFSGGRGG 626
L +S A V L +L + + F G G FG SG R
Sbjct: 542 SEYDALIKSTWPEDAQVKLSLLSE----IPELEEEESFNQGRSGNFGSWQNRSGSGSRQS 597
Query: 627 GFSDRRNDRFSGGFRGSKG 645
N +S FR SK
Sbjct: 598 FKRSYNNGTYSNTFRASKS 616
>gi|413932546|gb|AFW67097.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 745
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 220/555 (39%), Positives = 308/555 (55%), Gaps = 75/555 (13%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++R + L L+ +GI LFPIQ L G DL+ RA+TG GKTLAF +P+++
Sbjct: 89 AIARLGLPDELVATLEKRGITHLFPIQRAVLIPALGGRDLIARAKTGTGKTLAFGIPMIK 148
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
L + T GR P VLVL PTRELAKQV ++ + A L + C+YGG Y+
Sbjct: 149 QLME--QDDGRSTRRGRTPRVLVLAPTRELAKQVEKE--IKESAPKLGTVCVYGGVSYNV 204
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGRI D I G++ L +++ VLDEAD+ML +GF EDVE IL ++
Sbjct: 205 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQL 264
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
A++ Q++LFSAT+PSWVK +S ++L ++ TIDLVG++ K + ++ +P +++++
Sbjct: 265 P-ADR-QSMLFSATMPSWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLHAIPLTATSK 321
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
++ D+I Y+ GG+TI+FT TK+ A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 322 RTILSDLITVYAKGGKTIVFTRTKKDADEVSLALTTSIASEALHGDISQHQRERTLNGFR 381
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------ 454
GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG
Sbjct: 382 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSS 441
Query: 455 -----------------------VE-----AAETITQVSDSVIP----AFKSAAEELLNN 482
+E +AE + V P F AAE+L
Sbjct: 442 QKRTVMSLERDVGCKFEFISPPSIEEVLESSAEHVIATLRGVHPESTQYFLGAAEKLTEE 501
Query: 483 SGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLE----AGKPIYTPSFAFGVL 537
G A LA ALA G+++ SRSL+S + VT+ L G+ ++P G L
Sbjct: 502 LGPHA---LASALAHLSGFSQPPSSRSLISYEQGWVTLQLTREPGYGRGFFSPRSVTGFL 558
Query: 538 RRFLPEEKVELVKGMALTADGN--GAVFDVP---VADLDLFRSGADNAANVSLEVLKQLP 592
E+ K + +TAD N GAVFD+P DL N +L + +LP
Sbjct: 559 SDVCSAAADEVGK-IYITADENVQGAVFDLPEEIAKDLLTMEVPPGN----TLTKISKLP 613
Query: 593 PLQERE---QSRGRF 604
LQ+ S GRF
Sbjct: 614 ALQDDSPATDSYGRF 628
>gi|143455890|sp|Q0DM51.2|RH3_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
Flags: Precursor
gi|18855061|gb|AAL79753.1|AC096687_17 putative RNA helicase [Oryza sativa Japonica Group]
Length = 758
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 210/511 (41%), Positives = 289/511 (56%), Gaps = 65/511 (12%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++R + L L+ +GI LFPIQ LDG DL+ RA+TG GKTLAF +P+++
Sbjct: 105 AIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIK 164
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
L S + G R P VLVL PTRELAKQV ++ + A L++ C+YGG Y+
Sbjct: 165 QLMEEDDGRSVRRG--RIPRVLVLAPTRELAKQVEKE--IKESAPKLSTVCVYGGVSYNV 220
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGRI D I G++ L +K+ VLDEAD+ML +GF EDVE IL ++
Sbjct: 221 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQL 280
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ Q++LFSAT+P WVK +S ++L ++ TIDLVG++ K + ++ +P +S+++
Sbjct: 281 --PAERQSMLFSATMPGWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSK 337
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
V+ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 338 RTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFR 397
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------ 454
GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG
Sbjct: 398 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNS 457
Query: 455 ----VEAAE----------------------------TITQVSDSVIPAFKSAAEELLNN 482
V + E T+ V I F AAE L
Sbjct: 458 QRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEE 517
Query: 483 SGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLE----AGKPIYTPSFAFGVL 537
G +A LA ALA G+++ SRSL+S + VT+ L G+ ++P G L
Sbjct: 518 LGPNA---LASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFL 574
Query: 538 RRFLPEEKVELVKGMALTADG--NGAVFDVP 566
E+ K + LTAD GAVFD+P
Sbjct: 575 SDVSSAAADEVGK-IFLTADEKVQGAVFDLP 604
>gi|115456345|ref|NP_001051773.1| Os03g0827700 [Oryza sativa Japonica Group]
gi|113550244|dbj|BAF13687.1| Os03g0827700, partial [Oryza sativa Japonica Group]
Length = 723
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 210/511 (41%), Positives = 289/511 (56%), Gaps = 65/511 (12%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++R + L L+ +GI LFPIQ LDG DL+ RA+TG GKTLAF +P+++
Sbjct: 70 AIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIK 129
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
L S + G R P VLVL PTRELAKQV ++ + A L++ C+YGG Y+
Sbjct: 130 QLMEEDDGRSVRRG--RIPRVLVLAPTRELAKQVEKE--IKESAPKLSTVCVYGGVSYNV 185
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGRI D I G++ L +K+ VLDEAD+ML +GF EDVE IL ++
Sbjct: 186 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQL 245
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ Q++LFSAT+P WVK +S ++L ++ TIDLVG++ K + ++ +P +S+++
Sbjct: 246 --PAERQSMLFSATMPGWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSK 302
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
V+ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 303 RTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFR 362
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------ 454
GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG
Sbjct: 363 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNS 422
Query: 455 ----VEAAE----------------------------TITQVSDSVIPAFKSAAEELLNN 482
V + E T+ V I F AAE L
Sbjct: 423 QRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEE 482
Query: 483 SGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLE----AGKPIYTPSFAFGVL 537
G +A LA ALA G+++ SRSL+S + VT+ L G+ ++P G L
Sbjct: 483 LGPNA---LASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFL 539
Query: 538 RRFLPEEKVELVKGMALTADG--NGAVFDVP 566
E+ K + LTAD GAVFD+P
Sbjct: 540 SDVSSAAADEVGK-IFLTADEKVQGAVFDLP 569
>gi|255077858|ref|XP_002502509.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
gi|226517774|gb|ACO63767.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
Length = 790
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 164/354 (46%), Positives = 229/354 (64%), Gaps = 11/354 (3%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P V F +S + L+ +GIE+LFPIQA + L G D+VGRARTG GKTL F LPI
Sbjct: 132 PMHVDNFPLSDITKAALRKRGIETLFPIQASVLEPALQGRDVVGRARTGTGKTLGFSLPI 191
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
+ESL + P S +T R P +VL PTRELA QV ++ + L + C+YGG
Sbjct: 192 IESLLSNP---SNRTDRSRNPRCIVLAPTRELANQVEKE--IQATVPSLRTLCVYGGVAI 246
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L++G+D+V+GTPGR+ D I+RG+++L +++ VLDEAD+ML +GF EDVE I+
Sbjct: 247 SNQERPLRRGVDIVVGTPGRLIDLIQRGSLNLHDIEYCVLDEADQMLAVGFEEDVERIME 306
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
++ + QT LFSAT+PSWV I+ K+L +D TIDLVG+++ K + + + CS +
Sbjct: 307 EIPEQR--QTFLFSATMPSWVTRITQKYL-ADHVTIDLVGSQEQKVADTIDVMSCACSHT 363
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL---PGARALHGDIQQSQREVTLAG 404
+R+ ++ D++ Y G + I FT+TK A ++ L LHGDI Q+QRE TL
Sbjct: 364 SRTTILADLVTVYGKGAKAICFTQTKREADEVTAALGRRMATEVLHGDIAQAQRERTLKR 423
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458
FR G+F LVAT+VAARGLDI DV L++ E P D E+++HR GRTGRA + A
Sbjct: 424 FRDGRFSVLVATDVAARGLDITDVDLVVHYELPHDTESFVHRCGRTGRANKKGA 477
>gi|303275259|ref|XP_003056927.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
gi|226461279|gb|EEH58572.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
Length = 803
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 205/545 (37%), Positives = 290/545 (53%), Gaps = 71/545 (13%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
PN + F ISV + L+ +GIESLFPIQ+ L+G D+VGRARTG GKTL F LPI
Sbjct: 143 PNHIDNFPISVLTKAALRKRGIESLFPIQSAVLAPALEGRDIVGRARTGTGKTLGFSLPI 202
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
+ESL + P+ A R P +VL PTRELA QV + + + + C+YGG
Sbjct: 203 IESLLSNPSDARN-----RRPRCIVLAPTRELANQVEAEIQLT--VPSMRTVCVYGGVAI 255
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
QE L+ G+D V+GTPGR+ D I+RG++ L +++ VLDEAD+ML +GF EDVE I+
Sbjct: 256 TNQERALRNGVDFVVGTPGRLIDLIQRGSLQLQDIEYCVLDEADQMLAVGFEEDVERIMQ 315
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
++ + QT LFSAT+PSWVK ++ K+LK + IDLVG+ K K + + + CS
Sbjct: 316 EIPEER--QTFLFSATMPSWVKQLTRKYLK-EHVNIDLVGDSKQKVADTIDILSCACSHQ 372
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL---PGARALHGDIQQSQREVTLAG 404
+R+ ++ D++ Y G + I FT+TK A ++ L LHGDI Q+QRE TL
Sbjct: 373 SRTMILADLVTVYGKGAKAICFTQTKREADEVTAALGRRMATEVLHGDIAQAQRERTLKR 432
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA----------- 453
FR +F LVAT+VAARGLDI DV L++ E P D E+++HR GRTGRA
Sbjct: 433 FRDNRFSVLVATDVAARGLDITDVDLVVHFELPNDTESFVHRCGRTGRANKRGTAIAMFT 492
Query: 454 ---------------------------------GVEAAETITQVSDSVIPAFKSAAEELL 480
V+A ++ V D ++P F AE +L
Sbjct: 493 PRENYRLRTIVRETGVTFKSINAPTPAEVMTSSAVQAKHEMSLVDDELLPYFTPTAEAIL 552
Query: 481 NN------SGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSF- 532
+G S AE LA ALA G+TE RSLL+S + +T ++ G +
Sbjct: 553 EEVRAAGGNGRSEAETLAAALAALSGHTEPPPPRSLLTS-DVGLTTMVAKGHMLLPRDLL 611
Query: 533 -AFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQL 591
A ++ R + V + + AD +G FD+ ++ + A+ + L V L
Sbjct: 612 RALSMVNR----AAADGVGRIRILADNSGLCFDMNHTIVNDVIASAEELEGMELSVCASL 667
Query: 592 PPLQE 596
P L E
Sbjct: 668 PELVE 672
>gi|297830946|ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata]
gi|297329195|gb|EFH59614.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata]
Length = 612
Score = 318 bits (814), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 172/372 (46%), Positives = 243/372 (65%), Gaps = 13/372 (3%)
Query: 99 EQERGESEHPN-AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQ 157
E+ G+SE A+S IS + + L SKGIE LFPIQ + ++G D++GRARTG
Sbjct: 90 ERRVGDSESDGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGT 149
Query: 158 GKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217
GKTLAF +PI++ + K + K G GR P LVL PTRELA+QV ++F A L
Sbjct: 150 GKTLAFGIPIIDKII----KYNAKHGRGRNPLCLVLAPTRELARQVEKEF--RESAPSLD 203
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+ CLYGG P Q +L G+DV +GTPGR+ D ++RG ++LS ++F VLDEAD+ML++G
Sbjct: 204 TICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVG 263
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F EDVE+IL K+ + K Q+++FSAT+PSW++ ++ K+L ++ TIDLVG+ K + +
Sbjct: 264 FAEDVEIILEKLPE--KRQSMMFSATMPSWIRSLTKKYL-NNPLTIDLVGDSDQKLADGI 320
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQ 394
+ S R+ +I ++ ++ GG+ I+FT+TK A +L+ L ALHGDI
Sbjct: 321 TTYSILADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDIS 380
Query: 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
QSQRE TLAGFR G F LVAT+VAARGLD+ +V LII E P + E ++HR+GRTGRAG
Sbjct: 381 QSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAG 440
Query: 455 VEAAETITQVSD 466
+ + + D
Sbjct: 441 KKGSAILIYSQD 452
>gi|357122984|ref|XP_003563193.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 2 [Brachypodium distachyon]
Length = 749
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 225/590 (38%), Positives = 314/590 (53%), Gaps = 91/590 (15%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++R + L L+ +GI LFPIQ L+G DL+ RA+TG GKTLAF +P+++
Sbjct: 95 AIARLGLPDQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIK 154
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ + G GR P LVL PTRELAKQV ++ + A L++ C+YGG Y+
Sbjct: 155 QIIE--QDEGRSLGRGRIPRALVLAPTRELAKQVEKE--IMESAPKLSTVCVYGGVSYNV 210
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGR+ D I G++ L +++ VLDEAD+ML +GF EDVE IL ++
Sbjct: 211 QQNALSRGVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQL 270
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ Q++LFSAT+PSWVK +S ++L ++ TIDLVG++ K + ++ +P + +++
Sbjct: 271 --PAERQSMLFSATMPSWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLYAIPLTVTSK 327
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
++ D+I Y+ GG+TI+FT TK A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 328 RTILSDLITVYAKGGKTIVFTRTKRDADEVSLALTASIASEALHGDISQHQRERTLNGFR 387
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------ 454
GKF LVAT+VA+RGLDI +V LII E P D E ++HRSGRTGRAG
Sbjct: 388 QGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGNAILMFTNN 447
Query: 455 ----VEAAE-------------TITQVSDS---------------VIPAFKSAAEELLNN 482
V++ E T+ +V DS I F AAE L
Sbjct: 448 QRRTVKSLERDVGCRFEFIGPPTMEEVLDSSAEHVIATLRGVHQESIQYFIPAAERLSEE 507
Query: 483 SGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLE----AGKPIYTPSFAFGVL 537
G +A LA ALA G+++ SRSL+S + VT+ L + ++P G L
Sbjct: 508 LGPNA---LATALAHLSGFSQPPSSRSLISHEQGSVTLQLTRDPAYARGFFSPRSVTGFL 564
Query: 538 RRFLPEEKVELVKGMALTADG--NGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQ 595
P E+ K + L AD GAVFD+P S N +V K LP LQ
Sbjct: 565 SDVSPAAADEVGK-IYLIADERVQGAVFDLPEEIAKNLLSMELPPGNTLTKVTK-LPALQ 622
Query: 596 E---REQSRGRFGGG----------------GRGGFG------GRGGNRF 620
+ S GRF GRGG+ GRGG F
Sbjct: 623 DDGPATDSYGRFSNSDRGSRSRRGSRASGPRGRGGWDSDGEGFGRGGRSF 672
>gi|357122982|ref|XP_003563192.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 1 [Brachypodium distachyon]
Length = 769
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 225/590 (38%), Positives = 314/590 (53%), Gaps = 91/590 (15%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++R + L L+ +GI LFPIQ L+G DL+ RA+TG GKTLAF +P+++
Sbjct: 95 AIARLGLPDQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIK 154
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ + G GR P LVL PTRELAKQV ++ + A L++ C+YGG Y+
Sbjct: 155 QIIE--QDEGRSLGRGRIPRALVLAPTRELAKQVEKE--IMESAPKLSTVCVYGGVSYNV 210
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGR+ D I G++ L +++ VLDEAD+ML +GF EDVE IL ++
Sbjct: 211 QQNALSRGVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQL 270
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ Q++LFSAT+PSWVK +S ++L ++ TIDLVG++ K + ++ +P + +++
Sbjct: 271 --PAERQSMLFSATMPSWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLYAIPLTVTSK 327
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
++ D+I Y+ GG+TI+FT TK A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 328 RTILSDLITVYAKGGKTIVFTRTKRDADEVSLALTASIASEALHGDISQHQRERTLNGFR 387
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------ 454
GKF LVAT+VA+RGLDI +V LII E P D E ++HRSGRTGRAG
Sbjct: 388 QGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGNAILMFTNN 447
Query: 455 ----VEAAE-------------TITQVSDS---------------VIPAFKSAAEELLNN 482
V++ E T+ +V DS I F AAE L
Sbjct: 448 QRRTVKSLERDVGCRFEFIGPPTMEEVLDSSAEHVIATLRGVHQESIQYFIPAAERLSEE 507
Query: 483 SGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLE----AGKPIYTPSFAFGVL 537
G +A LA ALA G+++ SRSL+S + VT+ L + ++P G L
Sbjct: 508 LGPNA---LATALAHLSGFSQPPSSRSLISHEQGSVTLQLTRDPAYARGFFSPRSVTGFL 564
Query: 538 RRFLPEEKVELVKGMALTADG--NGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQ 595
P E+ K + L AD GAVFD+P S N +V K LP LQ
Sbjct: 565 SDVSPAAADEVGK-IYLIADERVQGAVFDLPEEIAKNLLSMELPPGNTLTKVTK-LPALQ 622
Query: 596 E---REQSRGRFGGG----------------GRGGFG------GRGGNRF 620
+ S GRF GRGG+ GRGG F
Sbjct: 623 DDGPATDSYGRFSNSDRGSRSRRGSRASGPRGRGGWDSDGEGFGRGGRSF 672
>gi|356505715|ref|XP_003521635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 771
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/357 (47%), Positives = 239/357 (66%), Gaps = 11/357 (3%)
Query: 103 GESEHPNAVSRFRISVPLR--EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
ES HP+ + ++ +P R E L+S+GI LFPIQ L+G D++ RA+TG GKT
Sbjct: 103 AESVHPDELDISKLDLPSRLVESLQSRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKT 162
Query: 161 LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220
LAF +PI++ LT S + GR P LVL PTRELAKQV ++ + A L++ C
Sbjct: 163 LAFGIPIIKGLTEDEHAPSHRRS-GRLPRFLVLAPTRELAKQVEKE--IKESAPYLSTVC 219
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG Y Q+ L +G+DVV+GTPGRI D I ++ LS +++ VLDEAD+ML +GF E
Sbjct: 220 VYGGVSYVTQQGALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEE 279
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVE+IL + + Q++LFSAT+PSWVK ++ K+L ++ TIDLVG+E+ K + ++
Sbjct: 280 DVEMILENL--PAQRQSMLFSATMPSWVKKLARKYL-NNPLTIDLVGDEEEKLAEGIKLY 336
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQ 397
+ +++++ ++ D++ Y+ GG+TI+FT+TK A +++ L + ALHGDI Q Q
Sbjct: 337 AIAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGDISQHQ 396
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RE TL GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG
Sbjct: 397 RERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 453
>gi|386857046|ref|YP_006261223.1| DEAD/DEAH box helicase [Deinococcus gobiensis I-0]
gi|380000575|gb|AFD25765.1| DEAD/DEAH box helicase-like protein [Deinococcus gobiensis I-0]
Length = 599
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 218/549 (39%), Positives = 304/549 (55%), Gaps = 75/549 (13%)
Query: 115 RISVP-LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
++ VP L +L +GI PIQA + L G DL+GRARTG GKTLAF LPI+++L
Sbjct: 5 QLIVPELAARLAERGITEASPIQAESLPHTLQGRDLIGRARTGTGKTLAFALPIIQNLE- 63
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
P++ R P +V+ PTRELAKQV ++F G LT+ +YGGA Y QE
Sbjct: 64 -PSRERS-----RLPRAIVVAPTRELAKQVADEFSKSG--ANLTTVTVYGGASYAPQENA 115
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L++G+DVV+GTPGR+ DH+ERGN+DLS++++ VLDEADEML +GF + +E IL K +
Sbjct: 116 LRRGVDVVVGTPGRLIDHLERGNLDLSAVQYAVLDEADEMLSVGFADAIETILEKTPEGR 175
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QT+LFSATL + +S K+L+ D T+D+VG K +A+ V H+ + S R++V+
Sbjct: 176 --QTMLFSATLNGDINRLSRKYLR-DPLTVDMVGEGKSQAAQTVEHLKVRVGRS-RTRVL 231
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGK 409
D++ Y+ + I+FT TK A +LA+ L + ALHGD+ Q+QRE L FRSG+
Sbjct: 232 ADLLTVYNP-EKAIVFTRTKREADELANELIHRGIESEALHGDLAQTQRERALGAFRSGR 290
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG--------------- 454
LVAT+VAARGLDI +V L++Q P+D E+Y+HRSGRTGRAG
Sbjct: 291 VGVLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRDGR 350
Query: 455 -VEAAETITQVSDSVIP----------------------------AFKSAAEELLNNSGL 485
+ E IT V + P F+ AE L + GL
Sbjct: 351 EMSGLERITGVRFTERPLPTPKEVASASARSSADLVRRVDSGAAQGFQEEAERLFSELGL 410
Query: 486 SAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEE 544
A L +ALAK G TE K+ SLLS E T++L G+ + P VL R +
Sbjct: 411 EA---LTRALAKISGVTEPAKAASLLSGEEGLTTLILH-GERLSVPR-TVAVLARGSDVD 465
Query: 545 KVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE---REQSR 601
L K + G V DVP ++ + ++ +EV ++LP L E RE+
Sbjct: 466 TRRLGK---VRQWRGGTVADVPSEYVEKLLAANPLEGDIQVEVAQELPELFEAPTRERRE 522
Query: 602 GRFGGGGRG 610
G + GG RG
Sbjct: 523 GSYSGGNRG 531
>gi|22331253|ref|NP_188872.2| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
gi|75335516|sp|Q9LUW5.1|RH53_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 53
gi|9293867|dbj|BAB01770.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|20259816|gb|AAM13255.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
Length = 616
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/360 (46%), Positives = 237/360 (65%), Gaps = 12/360 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S IS + + L SKGIE LFPIQ + ++G D++GRARTG GKTLAF +PI++
Sbjct: 105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID 164
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ K + K G GR P LVL PTRELA+QV ++F A L + CLYGG P
Sbjct: 165 KII----KYNAKHGRGRNPLCLVLAPTRELARQVEKEF--RESAPSLDTICLYGGTPIGQ 218
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L G+DV +GTPGR+ D ++RG ++LS ++F VLDEAD+ML++GF EDVE+IL K+
Sbjct: 219 QMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKL 278
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ K Q+++FSAT+PSW++ ++ K+L ++ T+DLVG+ K + + + S R
Sbjct: 279 PE--KRQSMMFSATMPSWIRSLTKKYL-NNPLTVDLVGDSDQKLADGITTYSIIADSYGR 335
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
+ +I ++ ++ GG+ I+FT+TK A +L+ L ALHGDI QSQRE TLAGFR
Sbjct: 336 ASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFR 395
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD 466
G F LVAT+VAARGLD+ +V LII E P + E ++HR+GRTGRAG + + + D
Sbjct: 396 DGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQD 455
>gi|168000763|ref|XP_001753085.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695784|gb|EDQ82126.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 638
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 217/584 (37%), Positives = 305/584 (52%), Gaps = 82/584 (14%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+ +S + L +GI LFPIQ + + G DL+ RA+TG GKTLAF +PI++
Sbjct: 27 AIDSLGVSEDIVNALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLAFGIPIIQ 86
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ + +++ + +GR+P LVL PTRELAKQV +F A L++ C+YGG
Sbjct: 87 HIIDAHKESAPR--HGRSPRALVLAPTRELAKQVEREF--MESAPMLSTVCVYGGVSISM 142
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ +L++G+D+ +GTPGRI D I+RG++ L ++ F VLDEAD+ML +GF EDVE IL ++
Sbjct: 143 QQRQLERGVDIAVGTPGRIIDLIDRGSLKLQNVNFLVLDEADQMLAVGFEEDVERILQQL 202
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
Q++LFSAT+P WVK +S K+L I+LVG+ K + + ++ + ++A+
Sbjct: 203 --PKNRQSMLFSATMPKWVKELSGKYLNR-PLMINLVGDADDKLAEGITNLAIQLPATAK 259
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADL---LPGARALHGDIQQSQREVTLAGFR 406
++ D+I ++ GG+TI+FT+TK A +A L ALHGDI Q QRE TL FR
Sbjct: 260 RSILSDLITVHAKGGKTIVFTQTKRDADDVAMAMGNLVACGALHGDISQLQREKTLNAFR 319
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETIT---- 462
G LVAT+VAARGLD+ +V L+I E P D E ++HR+GRTGRAG +
Sbjct: 320 EGNITVLVATDVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGRAGKTGTNILMFTNQ 379
Query: 463 ----------------------------------------QVSDSVIPAFKSAAEELLNN 482
V +S+ F+ AE LL
Sbjct: 380 QMRTMRTIESNVKCRFQMIGAPHVKDVMQASFDQVRGALKNVDESLAAEFRPTAESLLEE 439
Query: 483 SGLSAAELLAKALAKAVGYTEI-KSRSLLSSLEDHVTVVL--EAGKPIYTPSFAFGVLRR 539
G A A ALA G++++ SRSLL+ T+ L G+P GVL
Sbjct: 440 KGPDA---FAAALAHLSGFSQLPPSRSLLTHEPGMTTLRLMRSGGRPALNARGVSGVLSG 496
Query: 540 FLPEEKVELVKGMALTADG--NGAVFDVP--VADLDLFRSGADNAANVSLEVLKQLPPLQ 595
L + V + + D NGAVFD+P VA L D +V +LPP+
Sbjct: 497 -LSRSAADSVGKICIIDDRRVNGAVFDLPDDVAKEVLALPNQDGDV---FDVPTKLPPII 552
Query: 596 EREQSRGRFGGGGRGGFGGRGGNRFSGG---RGGGFSDRRNDRF 636
E R GG G FG RF GG RGG DR NDRF
Sbjct: 553 SEE----RRGGQSSGMFG-----RFGGGSDSRGG--MDRGNDRF 585
>gi|452824703|gb|EME31704.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 758
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 200/562 (35%), Positives = 303/562 (53%), Gaps = 76/562 (13%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
+E P + F++S + E L+ +G+ PIQ+ TF+++ G D++GR+RTG GKTLAFV
Sbjct: 186 NETPVPFTSFQLSKKILEILEERGLRDATPIQSATFELIYSGRDIIGRSRTGTGKTLAFV 245
Query: 165 LPILESLTNGPTKASKKTGYGRAPSV--LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
LPI++ L + + R + LVL PTRELAKQV ++F + + C +
Sbjct: 246 LPIMQKLV----EQLETHNIDRVSEIQCLVLAPTRELAKQVEQEFSAFAKCFRFRTSCFF 301
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG+ Y Q+ +K+GID+++ TPGR+ D +ERG++DL +KF VLDEADEML MGF ED+
Sbjct: 302 GGSSYEVQQRAIKRGIDILVATPGRLIDLLERGSVDLLKVKFFVLDEADEMLSMGFAEDI 361
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
+ I + + QTLLFSAT+P WV+ ++ K K++ +D +GN+ K ST V HI L
Sbjct: 362 DKISTYLPPTRERQTLLFSATIPPWVQELA-KSNKNNPIIVDAIGNKDTKTSTTVEHIAL 420
Query: 343 --PCSSSARSQVIPDIIRCYS---SGGRTIIFTETKESASQLAD---LLPG-ARALHGDI 393
P + +R ++ +I YS + R I+F TK L + G A+ALHGDI
Sbjct: 421 RVPPTELSRKLILESVISVYSAEMTNFRCIVFARTKAEVDSLVSSGRIHNGAAQALHGDI 480
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q QRE+TL+ FR G F L+AT+VAARGLDIN V L+IQ P D++ YIHR+GRTGRA
Sbjct: 481 TQKQREITLSKFREGSFQVLIATDVAARGLDINGVDLVIQYRVPEDIDMYIHRAGRTGRA 540
Query: 454 G-----------------------------VEAAETITQVSDSVIPAFKSAAE------- 477
G +E+ +I QV ++ F A++
Sbjct: 541 GRQGTCIILYTDEERNKLTLMENVCKIRFRLESPPSIQQVIETKANGFLRASQAVEGKWV 600
Query: 478 --------ELLNNSGLSAAE-------LLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLE 522
E + + + E +LA LA A+G + S+LS E+++ +L
Sbjct: 601 EPLIPVVKEYIESLHIEGEEREKQFPFVLASLLAVAMGQLNMPQVSILSG-EENMCPILV 659
Query: 523 AGKPIYTPSFAFGVLRRFLPEEKVELVKGM-ALTADGNGAVFDVPVADLDLFRSGADNA- 580
K + T S+ ++ R L ++ E G+ ++ AD AVFD+ + F A+ +
Sbjct: 660 KSKTVLTVSYIVRIVSRLLEDKGFESRVGLVSICADTKMAVFDLKNDIAERFVREANRSM 719
Query: 581 ------ANVSLEVLKQLPPLQE 596
+++ E+ +PPL E
Sbjct: 720 ESSKSLSHLLFELCSVIPPLLE 741
>gi|343172316|gb|AEL98862.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia]
Length = 782
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 229/627 (36%), Positives = 330/627 (52%), Gaps = 92/627 (14%)
Query: 100 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
Q +G S V++ + L + L +GI LFPIQ L+G D++ RA+TG GK
Sbjct: 116 QGKGLSADELEVAKLGLPQKLIDSLIKRGISQLFPIQRAVLVPALEGRDIIARAKTGTGK 175
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
TLAF +PIL+ +T G + S GR P VLVL PTRELAKQV ++ A L +
Sbjct: 176 TLAFGIPILKRVTEGHDERSNLRRLGRLPKVLVLAPTRELAKQVEKEMK--ETAPYLNTV 233
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
C+YGG Y +Q+ L +G+DVV+GTPGRI D + ++ L ++F VLDEAD+ML +GF
Sbjct: 234 CVYGGVSYTSQQSALSRGVDVVVGTPGRIIDLVNGNSLKLGEVEFLVLDEADQMLAVGFE 293
Query: 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339
EDVE+IL K+ + Q++LFSAT+P+W+K +S K+L + TIDLVG+ + K + ++
Sbjct: 294 EDVEVILEKL--PKERQSMLFSATMPTWIKKLSRKYL-DNPLTIDLVGDREEKLAEGIKL 350
Query: 340 IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQ----LADLLPGARALHGDIQQ 395
+ +++++ ++ D+I Y+ GG+TI+FT+TK A + L++ +P + ALHGDI Q
Sbjct: 351 YAISSTAASKRTMLSDVITVYAKGGKTIVFTQTKRDADEVSLALSNSIP-SEALHGDISQ 409
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455
QRE TL GFR GKF LVAT+VA+RGLDI +V L++ E P D E ++HRSGRTGRAG
Sbjct: 410 HQRERTLNGFRQGKFSVLVATDVASRGLDIPNVDLVVHYEMPNDPETFVHRSGRTGRAGK 469
Query: 456 EAA---------------------------------ETITQVSDSVIPA----------- 471
E E + +D V+
Sbjct: 470 EGTALLMYTSNQRRTVRSLERDVGCHFGYVGAPSVEEVLVSSADQVVATLRGVHPESIKF 529
Query: 472 FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKS-RSLLSSLEDHVTVVLEAGKPIYTP 530
F A++LL G A LA A+A G+++ S +SLLS + VT+ L +++
Sbjct: 530 FTPTAQKLLEEQGTGA---LAAAIAHLSGFSQPPSAKSLLSHEQGWVTLQLSRDS-VFSR 585
Query: 531 SF-----AFGVLRRFLPEEKVELVKGMALTADG--NGAVFDVP--VADLDLFRSGADNAA 581
+ G L P E+ K + L AD GAVFD+P +A +L + +
Sbjct: 586 GYMSARSVMGFLSDVYPTAADEVGK-IQLIADERVQGAVFDLPEEIAK-ELLKK--ELPP 641
Query: 582 NVSLEVLKQLPPLQEREQSRGRFGG------------GGRGGFGGRGGNRFSGGRG---- 625
+L + +LP LQ+ +G R G G GG+R S G G
Sbjct: 642 GNTLSKISKLPALQDDAPPSDNYGRFSGRGRGSRGGMSDRRGSG--GGSRTSRGWGRSQD 699
Query: 626 GGFSDRRNDRFSGGFRGSKGRGGGNRW 652
F D +D F G G R NRW
Sbjct: 700 SDFEDGGSDSFRRG--GRSPRPSTNRW 724
>gi|225450401|ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic
[Vitis vinifera]
gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 221/594 (37%), Positives = 318/594 (53%), Gaps = 86/594 (14%)
Query: 90 KVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDL 149
++E A +E E A+++ + L E L+ +GI LFPIQ L+G DL
Sbjct: 104 EIEASAAAQEDEL-------ALAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEGRDL 156
Query: 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209
+ RA+TG GKTLAF +PI++ L+ K + + GR P VLVL PTRELAKQV ++ +
Sbjct: 157 IARAKTGTGKTLAFGIPIIKRLSEDDEKRTSQRRSGRLPRVLVLAPTRELAKQVEKE--I 214
Query: 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269
A L++ C+YGG Y Q+ L +G+DVV+GTPGRI D I+ ++ L ++ VLDE
Sbjct: 215 KESAPYLSTVCVYGGVSYITQQNALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDE 274
Query: 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE 329
AD+ML +GF EDVE+IL K+ ++ Q++LFSAT+P+WVK ++ K+L + TIDLVG+
Sbjct: 275 ADQMLAVGFEEDVEVILEKL--PSERQSMLFSATMPAWVKKLARKYL-DNPLTIDLVGDH 331
Query: 330 KMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GA 386
K + ++ +P +++++ ++ D+I Y+ GG+TI+FT+TK A +++ L +
Sbjct: 332 DEKLAEGIKLYAIPTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSMALTNSIAS 391
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
ALHGDI Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P D E ++HR
Sbjct: 392 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 451
Query: 447 SGRTGRAGVE----------------------------------------AAETITQVSD 466
SGRTGRAG E +AE + +
Sbjct: 452 SGRTGRAGKEGTAILMFTSSQRRTVKSLERDVGCKFEFISPPAIEEVLESSAEQVVATLN 511
Query: 467 SVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKS-RSLLSSLEDHVTVVL 521
V P F A++L+ G A L+ G+++ S RSL+S + VT+ L
Sbjct: 512 GVHPESVEFFTPTAQKLIEEKGTGALAAALAHLS---GFSQPPSFRSLISHEQGWVTLQL 568
Query: 522 --EAGKPIYTPSF-----AFGVLRRFLPEEKVELVKGMALTADG--NGAVFDVPVADLDL 572
++G Y+ F G L P EL K + L AD GAVFD+P
Sbjct: 569 TRDSG---YSRGFLSARSVTGFLSDVYPTAADELGK-IYLVADERVQGAVFDLPEEIAKE 624
Query: 573 FRSGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRGGFGGRGGNRFSGGRGG 626
+ N ++ + +LP LQ+ G G + GR NR RGG
Sbjct: 625 LLNKQMPPGN-TISKITKLPALQD---------DGPAGDYYGRFSNRDRSSRGG 668
>gi|356572874|ref|XP_003554590.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 771
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 168/357 (47%), Positives = 240/357 (67%), Gaps = 11/357 (3%)
Query: 103 GESEHPNAVSRFRISVPLR--EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
ES +P+ + ++ +P R E L+S+GI LFPIQ L+G D++ RA+TG GKT
Sbjct: 102 AESVNPDELDISKLDLPSRLVESLRSRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKT 161
Query: 161 LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220
LAF +PI++ LT S + GR P LVL PTRELAKQV ++ + A L++ C
Sbjct: 162 LAFGIPIIKGLTEDEHAPSHRRS-GRLPRFLVLAPTRELAKQVEKE--IKESAPYLSTVC 218
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG Y Q+ L +G+DVV+GTPGRI D I ++ LS +++ VLDEAD+ML +GF E
Sbjct: 219 VYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEE 278
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVE+IL + ++ Q++LFSAT+PSWVK ++ K+L ++ TIDLVG+E+ K + ++
Sbjct: 279 DVEMILENL--PSQRQSMLFSATMPSWVKKLARKYL-NNPLTIDLVGDEEEKLAEGIKLY 335
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQ 397
+ +++++ ++ D++ Y+ GG+TI+FT+TK A +++ L + ALHGDI Q Q
Sbjct: 336 AIAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGDISQHQ 395
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RE TL GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG
Sbjct: 396 RERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 452
>gi|148906285|gb|ABR16298.1| unknown [Picea sitchensis]
Length = 802
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 227/605 (37%), Positives = 316/605 (52%), Gaps = 86/605 (14%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+S +S L E L ++GI LFPIQ L+G DL+GRA+TG GKTLAF +PI+E
Sbjct: 146 LSGLNLSQELVEALANRGITHLFPIQRAVLVPALEGRDLIGRAKTGTGKTLAFGIPIIER 205
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
LT + R P VLVL PTRELAKQV ++F A L++ C+YGG Y +Q
Sbjct: 206 LTKDNKENKLLRQSRRLPRVLVLAPTRELAKQVEKEFK--ESAPFLSTACIYGGVSYVSQ 263
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+ L +G+DVV+GTPGRI D + ++ L+ ++F VLDEAD+ML +GF EDVE+IL +
Sbjct: 264 QNALARGVDVVVGTPGRIIDLVNSKSLKLNEVQFLVLDEADQMLAVGFEEDVEIILDNL- 322
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN--EKMKASTNVRHIVLPCSSSA 348
+ Q++LFSAT+P WVK +S K L ++ TIDLVG EK+ + + SS++
Sbjct: 323 -PAERQSMLFSATMPGWVKKLSRKHL-NNPMTIDLVGENEEKLAEGIKLYAVATTTSSNS 380
Query: 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGF 405
+ ++ D+I ++ GG+TI+FT+TK A +++ L ALHGDI Q QRE TLAGF
Sbjct: 381 KRSILGDLITVFAKGGKTIVFTQTKRDADEISLGLSSTIACEALHGDISQHQRERTLAGF 440
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE--------- 456
R GKF LVAT+VAARGLDI +V L+I E P D E ++HRSGRTGRAG E
Sbjct: 441 REGKFSALVATDVAARGLDITNVDLVIHYEFPNDPETFVHRSGRTGRAGKEGIAILMYPS 500
Query: 457 ---------------------------AAETITQ--------VSDSVIPAFKSAAEELLN 481
ET TQ V +I F A +L+
Sbjct: 501 NGKRKVRSLEHEVGCRFEYINPPRQEDVLETSTQHVAKALGSVHPELINIFLPTANKLME 560
Query: 482 NSGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTV------VLEAGKPIYTPSFAF 534
G +A L+ G+++ SRSL++ E T+ + G+
Sbjct: 561 EKGTNALAAALARLS---GFSQPPSSRSLITHEEGWTTLQMTRESTMPDGRQQLNARELM 617
Query: 535 GVLRRFLPEEKVELVKGMALTADGN--GAVFDVP--VADLDLFRSGADNAANVSLEVLKQ 590
G+L P + V + DG GAVFD+P VA L + ++ + Q
Sbjct: 618 GILSEMWP-AAADKVGKIRTYGDGKAEGAVFDLPKDVAKELLLKQA---LPGYTVSKITQ 673
Query: 591 LPPLQERE---QSRGRF---GGGGRGGFGGRGGNRFSGGRGGGFSDRRND--RFSGGFRG 642
LP +++ E RGR+ R GGRG N S G+ R ND +SGG++
Sbjct: 674 LPVMEDEEPPSDRRGRYSDRSASYRSFGGGRGRNTNSWGK------RSNDDGDWSGGWKP 727
Query: 643 SKGRG 647
+ G
Sbjct: 728 RRSYG 732
>gi|297830944|ref|XP_002883354.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
lyrata]
gi|297329194|gb|EFH59613.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
lyrata]
Length = 615
Score = 314 bits (805), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 165/348 (47%), Positives = 232/348 (66%), Gaps = 12/348 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S IS + + LK +GIE LFPIQ + + G D++GRARTG GKTLAF +P+++
Sbjct: 121 AISELGISPEIVKALKGRGIEKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPVID 180
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ K + K G G+ P LVL PTRELA+QV ++F A L + CLYGG P
Sbjct: 181 KII----KFNAKHGRGKNPQCLVLAPTRELARQVEKEF--RESAPSLDTICLYGGTPIGQ 234
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L GIDV +GTPGRI D ++RG ++LS ++F VLDEAD+ML++GF EDVE+IL K+
Sbjct: 235 QMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL 294
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ K Q+++FSAT+PSW++ ++ K+L ++ TIDLVG+ K + + + S R
Sbjct: 295 PE--KRQSMMFSATMPSWIRSLTKKYL-NNPLTIDLVGDSDQKLADGITMYSIAADSYGR 351
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
+ +I ++ + GG+ I+FT+TK A +LA L + ALHGDI Q+QRE TLAGFR
Sbjct: 352 ASIIGPLVNEHGKGGKCIVFTQTKRDADRLAFGLAKSFKCEALHGDISQAQRERTLAGFR 411
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G F LVAT+VAARGLD+ +V L+I E P + E ++HR+GRTGRAG
Sbjct: 412 DGNFNILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAG 459
>gi|15228722|ref|NP_188870.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
gi|75335517|sp|Q9LUW6.1|RH9_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 9
gi|9293865|dbj|BAB01768.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|20268676|gb|AAM14042.1| putative RNA helicase [Arabidopsis thaliana]
gi|332643099|gb|AEE76620.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
Length = 610
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/360 (46%), Positives = 237/360 (65%), Gaps = 12/360 (3%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++ IS + + LK +GIE LFPIQ + ++G D++GRARTG GKTLAF +PI++
Sbjct: 117 AIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID 176
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ K + K G G+ P LVL PTRELA+QV ++F A L + CLYGG P
Sbjct: 177 KII----KFNAKHGRGKNPQCLVLAPTRELARQVEKEF--RESAPSLDTICLYGGTPIGQ 230
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L GIDV +GTPGRI D ++RG ++LS ++F VLDEAD+ML++GF EDVE+IL K+
Sbjct: 231 QMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL 290
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
K Q+++FSAT+PSW++ ++ K+L ++ TIDLVG+ K + + + S R
Sbjct: 291 P--AKRQSMMFSATMPSWIRSLTKKYL-NNPLTIDLVGDSDQKLADGITMYSIAADSYGR 347
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
+ +I +++ + GG+ I+FT+TK A +LA L + ALHGDI Q+QRE TLAGFR
Sbjct: 348 ASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFR 407
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD 466
G F LVAT+VAARGLD+ +V L+I E P + E ++HR+GRTGRAG + + + D
Sbjct: 408 DGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQD 467
>gi|209882562|ref|XP_002142717.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209558323|gb|EEA08368.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 667
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 168/390 (43%), Positives = 246/390 (63%), Gaps = 36/390 (9%)
Query: 85 KKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL 144
KK+K +V E+ VE + S E LK +GI LFPIQA +F+ +
Sbjct: 4 KKRKVEVNEESSVE--------------LYPFSTETMEILKKRGINRLFPIQAKSFNYIF 49
Query: 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204
+ +D++G+A+TG GKTLAFVLP++E L + + G R P VLVLLPTRELA+QV
Sbjct: 50 NKNDVLGKAKTGTGKTLAFVLPVIERLIKKGKFHTNEIG--RKPLVLVLLPTRELAQQVS 107
Query: 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
+F++ G +YGG+P + Q ++KKG+D+++G PGR+ D IER +++S +
Sbjct: 108 NEFELMKGNNRYKVVSIYGGSPEYPQIQEVKKGVDIIVGCPGRVLDFIERNILNVSKINV 167
Query: 265 RVLDEADEMLRMGFVEDVELILGKVE--------DAN-KVQTLLFSATLPSWVKHISTKF 315
+LDEAD+ML MGF E V+ ++ V+ D N + Q LLFSAT+PSW+K I +
Sbjct: 168 LILDEADKMLEMGFKEYVDKVIDFVKKQTSEENTDKNRRFQILLFSATVPSWIKKIVNEI 227
Query: 316 LKSDKKTIDLV-----GNEKMKAS--TNVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTI 367
+ +D T+D+ GNE S T +RH+ + C+ R+ ++ DII Y+ G+ I
Sbjct: 228 MSNDTVTVDVTNISVDGNEDSSDSGNTRIRHLAIQCAYPQRTALLKDIITMYAGIHGKCI 287
Query: 368 IFTETKESASQL---ADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
IFTETK++A+++ + + + LHGDIQQSQRE+ L F+ G++ LVAT+VAARGL
Sbjct: 288 IFTETKQTANEISMRSTISDMCQVLHGDIQQSQREIALQAFKEGRYRCLVATDVAARGLH 347
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
I+DV ++IQ PPRD++ YIHR+GRTGRAG
Sbjct: 348 IDDVAVVIQLAPPRDIDTYIHRAGRTGRAG 377
>gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 772
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 169/372 (45%), Positives = 244/372 (65%), Gaps = 13/372 (3%)
Query: 96 GVEEQERGES---EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
G E+ GES + A+S+ + L E L+ +GI LFPIQ L+G DL+ R
Sbjct: 104 GYEDDGAGESLPDDDELAISKLGLPQRLVESLEKRGITHLFPIQRAVLVPALEGRDLIAR 163
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212
A+TG GKTLAF +PI++ +T + ++TG R P VLVL PTRELAKQV ++ +
Sbjct: 164 AKTGTGKTLAFGIPIIKCITEDDKSSQRRTG--RLPRVLVLAPTRELAKQVEKEIN--ES 219
Query: 213 AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE 272
A L++ C+YGG Y Q L +G+DVV+GTPGRI D I G++ L +++ VLDEAD+
Sbjct: 220 APYLSTVCVYGGVSYITQRNALSRGVDVVVGTPGRIIDLINSGSLKLGEVEYLVLDEADQ 279
Query: 273 MLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMK 332
ML GF EDVE+IL + +K Q++LFSAT+P+WVK ++ K+L + + IDLVG+++ K
Sbjct: 280 MLSFGFEEDVEVILENL--PSKRQSMLFSATMPTWVKKLARKYLDNPLQ-IDLVGDQEEK 336
Query: 333 ASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARAL 389
+ ++ + +++++ ++ D++ Y+ GG+TIIFT+TK A +++ +L + AL
Sbjct: 337 LAEGIKLYAISTNATSKRSILSDLVTVYAKGGKTIIFTQTKRDADEVSMVLTNSIASEAL 396
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGDI Q QRE TL GFR GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGR
Sbjct: 397 HGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGR 456
Query: 450 TGRAGVEAAETI 461
TGRAG E +
Sbjct: 457 TGRAGKEGTAVL 468
>gi|325283382|ref|YP_004255923.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
MRP]
gi|324315191|gb|ADY26306.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
MRP]
Length = 612
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 217/554 (39%), Positives = 297/554 (53%), Gaps = 74/554 (13%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
I+ L +L +GI PIQA + L G DL+GRARTG GKTLAF LPI++ L P
Sbjct: 7 IAPALAARLAERGITEASPIQAESLPHTLQGRDLIGRARTGTGKTLAFALPIIQGLE--P 64
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
++ R P +V+ PTRELA+QV +F+ G LT +YGGA Y QE L+
Sbjct: 65 SRERS-----RLPRAIVVAPTRELARQVAAEFEQTGRE--LTVLTVYGGAAYGPQETALR 117
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
+G+DVV+GTPGR+ DH+ERGN+DL +K+ VLDEADEML +GF + +E IL +
Sbjct: 118 RGVDVVVGTPGRLIDHLERGNLDLQEVKYAVLDEADEMLSVGFADAIETILKTTPEGR-- 175
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTLLFSATL ++ +S K+L +D +D+VG K +A+ V H+ + S R++V+ D
Sbjct: 176 QTLLFSATLTPEIRRLSNKYL-NDPLVVDMVGEGKSQAAQTVEHLKVRVGRS-RTRVLAD 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
++ Y+ + I+FT TK +LA L A ALHGD+ Q+QRE L FRSG+
Sbjct: 234 LLTVYNPE-KAIVFTRTKRETDELALELIHRGFEAEALHGDLAQNQRERALGSFRSGRTS 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG----------------- 454
LVAT+VAARGLDI +V L++Q P+D E+Y+HRSGRTGRAG
Sbjct: 293 ILVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRAGTAIIMYGDREQRDI 352
Query: 455 ---------------------VEAA------ETITQVSDSVIPAFKSAAEELLNNSGLSA 487
V+ A E + +V F AE LL G
Sbjct: 353 NGLERVTGVRFTERPLPTPREVQEASAHASSEMLRRVDAEAAAGFMEQAEALLEEMG--- 409
Query: 488 AELLAKALAKAVGYTEIKS-RSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKV 546
AE LA+ALAK G TE ++ SLLS E T++L + + + A +L R +
Sbjct: 410 AEALARALAKISGVTEPQAPASLLSGEEGQTTLILHGER--LSIARAVALLARHSDVDSR 467
Query: 547 ELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGRFGG 606
+L K + GAV DVP + + + +EV ++LP L E+ R GG
Sbjct: 468 KLGK---VRQWRGGAVADVPTQYVAALMKASPLDGEIGVEVAQELPELFEQPTRERRDGG 524
Query: 607 GGRGGFGGRGGNRF 620
FG RGG RF
Sbjct: 525 ---RSFGDRGGRRF 535
>gi|302769696|ref|XP_002968267.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
gi|300163911|gb|EFJ30521.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
Length = 614
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 198/538 (36%), Positives = 300/538 (55%), Gaps = 65/538 (12%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++ I + + L +GI +LFPIQ F + G DL+ RA+TG GKTLAF +PIL+
Sbjct: 5 AIASLGIDSRIVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIPILD 64
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+++ K+S + P ++L PTRELAKQV + + A L+ C+YGG
Sbjct: 65 NISR--EKSSMQFRPAGTPRAIILAPTRELAKQVENELVL--AAPHLSVVCIYGGVSIEG 120
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L ++VV+GTPGR+ D +ERG++ L+ +KF +LDEAD+ML +GF E+VE I+ K+
Sbjct: 121 QRRQLASSVEVVVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKL 180
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ T+LFSAT+PSW++++++K+LK + IDLVG + K + ++ + + A+
Sbjct: 181 --PLQRHTMLFSATMPSWIRNLTSKYLK-NPTMIDLVGENEDKVAEGIKLYAVSTNDLAK 237
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
++++ D++ Y+ GG+ I+FT+TK +A ++ G ALHGDI Q QRE TL+GFR
Sbjct: 238 NKLLADLLTVYAKGGKAIVFTKTKRDTDDVAAVMSRSIGCEALHGDISQYQREKTLSGFR 297
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------ 454
G+F LVAT+VAARGLDI +V LI+ E P D E ++HRSGRTGRAG
Sbjct: 298 DGRFNVLVATDVAARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGRAGKKGTCILMYTLN 357
Query: 455 -------VE-------------------------AAETITQVSDSVIPAFKSAAEELLNN 482
+E A+E+I V + F AA++LL
Sbjct: 358 QKRVLRTIESEVGCKFEAIGPPAAEDVLASSSDHASESIKSVHPDLAKLFLPAAQKLLEE 417
Query: 483 SGLSAAELLAKALAKAVGYTEI-KSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFL 541
G++A LA A+A G T++ RSLL+ E ++T+ L G I + + + V++
Sbjct: 418 QGVTA---LAAAMAHVSGVTQLPPKRSLLTYEEGYMTLQLTGGNLIDSSAVSSAVMQL-- 472
Query: 542 PEEKVELVKG---MALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 596
K + G M ++ G VFD+P DL N + L + QLP LQE
Sbjct: 473 -SSKAGMSMGRVTMLSSSTATGGVFDLP-EDLAKEILALQNVGSNVLTAVWQLPDLQE 528
>gi|302788684|ref|XP_002976111.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
gi|300156387|gb|EFJ23016.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
Length = 597
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 198/538 (36%), Positives = 300/538 (55%), Gaps = 65/538 (12%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++ I + + L +GI +LFPIQ F + G DL+ RA+TG GKTLAF +PIL+
Sbjct: 5 AIASLGIDSRIVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIPILD 64
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+++ K+S + P ++L PTRELAKQV + + A L+ C+YGG
Sbjct: 65 NISR--EKSSMQFRPAGTPRAIILAPTRELAKQVENELVL--AAPHLSVVCIYGGVSIEG 120
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L ++VV+GTPGR+ D +ERG++ L+ +KF +LDEAD+ML +GF E+VE I+ K+
Sbjct: 121 QRRQLASSVEVVVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKL 180
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ T+LFSAT+PSW++++++K+LK + IDLVG + K + ++ + + A+
Sbjct: 181 P--LQRHTMLFSATMPSWIRNLTSKYLK-NPTMIDLVGENEDKVAEGIKLYAVSTNDLAK 237
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
++++ D++ Y+ GG+ I+FT+TK +A ++ G ALHGDI Q QRE TL+GFR
Sbjct: 238 NKLLADLLTVYAKGGKAIVFTKTKRDTDDVAAVMSRSIGCEALHGDISQYQREKTLSGFR 297
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------ 454
G+F LVAT+VAARGLDI +V LI+ E P D E ++HRSGRTGRAG
Sbjct: 298 DGRFNVLVATDVAARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGRAGKKGTCILMYTLN 357
Query: 455 -------VE-------------------------AAETITQVSDSVIPAFKSAAEELLNN 482
+E A+E+I V + F AA++LL
Sbjct: 358 QKRVLRTIESEVGCKFEAIGPPAAEDVLASSSDHASESIKSVHPDLAKLFLPAAQKLLEE 417
Query: 483 SGLSAAELLAKALAKAVGYTEI-KSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFL 541
G++A LA A+A G T++ RSLL+ E ++T+ L G I + + + V++
Sbjct: 418 QGVNA---LAAAMAHVSGVTQLPPKRSLLTYEEGYMTLQLTGGNLIDSSAVSSAVMQL-- 472
Query: 542 PEEKVELVKG---MALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 596
K + G M ++ G VFD+P DL N + L +K LP LQE
Sbjct: 473 -SSKAGMSMGRVTMLSSSTATGGVFDLP-EDLAKEILALQNVGSNVLTAVKVLPDLQE 528
>gi|343172314|gb|AEL98861.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia]
Length = 782
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 202/523 (38%), Positives = 291/523 (55%), Gaps = 67/523 (12%)
Query: 100 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
Q +G S V++ + L + L +GI LFPIQ L+G D++ RA+TG GK
Sbjct: 116 QGKGLSADELEVAKLGLPQKLVDSLIKRGISQLFPIQRAVLVPALEGRDIIARAKTGTGK 175
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
TLAF +PIL+ +T G + S GR P VLVL PTRELAKQV ++ A L +
Sbjct: 176 TLAFGIPILKRVTEGHDERSNLRRLGRLPKVLVLAPTRELAKQVEKEMK--ETAPYLNTV 233
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
C+YGG Y +Q+ L +G+DVV+GTPGRI D I ++ L ++F VLDEAD+ML +GF
Sbjct: 234 CVYGGVSYTSQQSALSRGVDVVVGTPGRIIDLINGKSLKLGEVEFLVLDEADQMLAVGFE 293
Query: 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339
EDVE+IL + + Q++LFSAT+P+W+K +S K+L + TIDLVG+ + K + ++
Sbjct: 294 EDVEVILETL--PKERQSMLFSATMPTWIKKLSRKYL-DNPLTIDLVGDREEKLAEGIKL 350
Query: 340 IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQ----LADLLPGARALHGDIQQ 395
+ +++++ ++ D+I Y+ GG+TI+FT+TK A + L++ +P + ALHGDI Q
Sbjct: 351 YAISSTAASKRTMLSDVITVYAKGGKTIVFTQTKRDADEVSLALSNSIP-SEALHGDISQ 409
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455
QRE TL GFR GKF LVAT+VA+RGLDI +V L++ E P D E ++HRSGRTGRAG
Sbjct: 410 HQRERTLNGFRQGKFSVLVATDVASRGLDIPNVDLVVHYEMPNDPETFVHRSGRTGRAGK 469
Query: 456 EAA---------------------------------ETITQVSDSVIPA----------- 471
E E + +D V+
Sbjct: 470 EGTALLMYTSNQRRTVRSLERDVGCHFEYVGAPSVEEVLESSADQVVATLRGVHPDSIKF 529
Query: 472 FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKS-RSLLSSLEDHVTVVLEAGKPIYTP 530
F A++LL G A LA A+A G+++ S +SLLS + VT+ L +++
Sbjct: 530 FTPTAQKLLEEQGTGA---LAAAIAHLSGFSQPPSAKSLLSHEQGWVTLQLSRDS-VFSR 585
Query: 531 SF-----AFGVLRRFLPEEKVELVKGMALTADG--NGAVFDVP 566
+ G L P E+ K + L AD GAVFD+P
Sbjct: 586 GYMSARSVMGFLSDVYPTAADEVGK-IQLIADERVQGAVFDLP 627
>gi|218194025|gb|EEC76452.1| hypothetical protein OsI_14162 [Oryza sativa Indica Group]
Length = 779
Score = 311 bits (797), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 210/525 (40%), Positives = 289/525 (55%), Gaps = 79/525 (15%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFD--------------MVLDGSDLVGRART 155
A++R + L L+ +GI LFPIQ LDG DL+ RA+T
Sbjct: 112 AIARLGLPEQLVSTLEKRGITHLFPIQVSVLGGDSEGIGVSRAVLIPALDGRDLIARAKT 171
Query: 156 GQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG 215
G GKTLAF +P+++ L S + G R P VLVL PTRELAKQV ++ + A
Sbjct: 172 GTGKTLAFGIPMIKQLMEEDDGRSVRRG--RIPRVLVLAPTRELAKQVEKE--IKESAPK 227
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L++ C+YGG Y+ Q+ L +G+DVV+GTPGRI D I G++ L +K+ VLDEAD+ML
Sbjct: 228 LSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLA 287
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
+GF EDVE IL ++ + Q++LFSAT+P WVK +S ++L ++ TIDLVG++ K +
Sbjct: 288 VGFEEDVETILQQL--PAERQSMLFSATMPGWVKKLSRRYL-NNPLTIDLVGDQDEKLAE 344
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGD 392
++ +P +S+++ V+ D+I Y+ GG+TI+FT+TK A +++ L + ALHGD
Sbjct: 345 GIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGD 404
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
I Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGR
Sbjct: 405 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 464
Query: 453 AG----------------VEAAE----------------------------TITQVSDSV 468
AG V + E T+ V
Sbjct: 465 AGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTES 524
Query: 469 IPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLE----A 523
I F AAE L G +A LA ALA G+++ SRSL+S + VT+ L
Sbjct: 525 IQYFIPAAERLQEELGPNA---LASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGY 581
Query: 524 GKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG--NGAVFDVP 566
G+ ++P G L E+ K + LTAD GAVFD+P
Sbjct: 582 GRGFFSPRSVTGFLSDVSSAAADEVGK-IFLTADEKVQGAVFDLP 625
>gi|402880683|ref|XP_003903927.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Papio anubis]
Length = 680
Score = 311 bits (797), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 230/653 (35%), Positives = 324/653 (49%), Gaps = 118/653 (18%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRI 116
L E K K + K P ++E E+
Sbjct: 61 AKKTKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEK-------------- 106
Query: 117 SVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP- 175
KSK + SL + D L+ T + K AF +N P
Sbjct: 107 --------KSKRVSSLDSSTHKSSDNKLE------ETLTREQKEGAF--------SNFPI 144
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
++ + K GR VLVL PTRELA QV +DF D+ L+ C YGG Y +Q +
Sbjct: 145 SEETIKLLKGRG--VLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQSQINHI 199
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVED 291
+ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+ K +
Sbjct: 200 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 259
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
+ QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C S R
Sbjct: 260 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 319
Query: 352 VIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRS 407
VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+TL GFR
Sbjct: 320 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFRE 379
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------- 454
G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 380 GSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRE 439
Query: 455 -------------------------------VEAAETITQVSDSVIPAFKSAAEELLNNS 483
++A ++ VS + + F+ +A+ L+
Sbjct: 440 RGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEK 499
Query: 484 GLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPE 543
G A + LA ALA G + + RSL++S + VT+ LE+ + I S A+ L R L
Sbjct: 500 G--AVDALAAALAHISGASSFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSS 557
Query: 544 EKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 596
V + M L G FDVP + + ++ ++ + L V +LP ++E
Sbjct: 558 NAVSQITRMCLLKGNMGVCFDVPTTESERLQAEWHDSDWI-LSVPAKLPEIEE 609
>gi|168042093|ref|XP_001773524.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675226|gb|EDQ61724.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 619
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 197/509 (38%), Positives = 277/509 (54%), Gaps = 63/509 (12%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++ +S + E L +GI LFPIQ + + G DL+ RA+TG GKTLAF +PI+
Sbjct: 5 AINSLGVSEDIVEALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLAFGIPIIR 64
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ +G A GR+P LVL PTRELAKQV +F A L++ C+YGG P
Sbjct: 65 HIVDG--NAENAPRQGRSPRALVLAPTRELAKQVEREF--MESAPMLSTVCVYGGVPISM 120
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ +L++G+D+ +GTPGRI D I+RG++ L + F VLDEAD+ML +GF EDVE IL ++
Sbjct: 121 QQRQLERGVDIAVGTPGRIIDLIDRGSLKLKDVHFLVLDEADQMLAVGFEEDVERILQQL 180
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ Q++LFSAT+P WVK +S K+L TIDLVG+ K + ++++ + +SA+
Sbjct: 181 --PKQRQSMLFSATMPKWVKELSRKYLNK-PLTIDLVGDSDEKLADGIKNLAIQLPASAK 237
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADL---LPGARALHGDIQQSQREVTLAGFR 406
++ D+I + GG+TI+FT+TK A +A L ALHGDI Q QRE TL+ FR
Sbjct: 238 RSILSDLITVHGKGGKTIVFTQTKRDADDVAMAMGNLVSCGALHGDISQVQREKTLSAFR 297
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------ 454
GK LVAT+VAARGLD+ +V L+I E P D E ++HR+GRTGRAG
Sbjct: 298 DGKIAVLVATDVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGRAGRSGTNILMFTSQ 357
Query: 455 -VEAAETI-------------------------------TQVSDSVIPAFKSAAEELLNN 482
V TI V S+ F+ AE LL
Sbjct: 358 QVRTMRTIENNVKCKFQIVGLPHVRDVMRASFEQVKGALENVDASLAAEFRPTAESLLEE 417
Query: 483 SGLSAAELLAKALAKAVGYTEI-KSRSLLSSLEDHVTV--VLEAGKPIYTPSFAFGVLRR 539
G ++ A ALA G++++ SRSLL+ TV V +P + VL
Sbjct: 418 KG---PDVFAAALAHLSGFSQLPPSRSLLTYEPGMTTVRLVRTGARPPLSARAVSAVLSG 474
Query: 540 FLPEEKVELVKGMALTADG--NGAVFDVP 566
+ + V + + + NGAVFDVP
Sbjct: 475 -MSRPAADRVGKICIIDEQKMNGAVFDVP 502
>gi|224124522|ref|XP_002330044.1| predicted protein [Populus trichocarpa]
gi|222871469|gb|EEF08600.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 169/371 (45%), Positives = 240/371 (64%), Gaps = 8/371 (2%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
A V+ + E SE VS+ + L + L+++GI LFPIQ L+G D
Sbjct: 113 ADVDYASSETEPSSNTSEDELDVSKLGLPHRLVQTLQNRGITHLFPIQRAVLIPALEGRD 172
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208
L+ RA+TG GKTLAF +PI++ LT + GR P VLVL PTRELAKQV ++
Sbjct: 173 LIARAKTGTGKTLAFGIPIIKRLTEDAELRGSQRRTGRLPKVLVLAPTRELAKQVEKE-- 230
Query: 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268
+ A L+S C+YGG Y Q+ L +G+DVV+GTPGRI D ++ ++ L +++ VLD
Sbjct: 231 IKESAPYLSSVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLD 290
Query: 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
EAD+ML GF EDVE+IL + +K Q++LFSAT+P+WVK ++ K+L + + IDLVG+
Sbjct: 291 EADQMLSFGFEEDVEVILENL--PSKRQSMLFSATMPTWVKKLARKYLDNPLQ-IDLVGD 347
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---G 385
++ K + ++ L +++++ ++ D++ Y+ GG+TIIFT+TK A +++ L
Sbjct: 348 QEEKLAEGIKLYALSATAASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTNTIA 407
Query: 386 ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445
+ ALHGDI Q QRE TL GFR GKF LVAT+VA+RGLDI +V LII E P D E ++H
Sbjct: 408 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDAETFVH 467
Query: 446 RSGRTGRAGVE 456
RSGRTGRAG E
Sbjct: 468 RSGRTGRAGKE 478
>gi|323450835|gb|EGB06714.1| hypothetical protein AURANDRAFT_28650, partial [Aureococcus
anophagefferens]
Length = 482
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 174/394 (44%), Positives = 236/394 (59%), Gaps = 35/394 (8%)
Query: 92 EPEAGVEEQERGESEHPNAVSRF---RISVPLRE--KLKSKGIESLFPIQAMTFDMVLDG 146
EP + E E P A R R V ++ KL +GI+++ IQ +TFD G
Sbjct: 65 EPSPAEDAAEEQADEAPAADPRLIAGREGVHAKQAAKLAQRGIDTMTEIQHLTFDAAHAG 124
Query: 147 SDLVGRARTGQGKTLAFVLPILESLTN----GPTKASKKTGYGRAPSVLVLLPTRELAKQ 202
D++G++RTG GKTLAF LP++E L G K+ R P++LVL PTRELAKQ
Sbjct: 125 RDVLGKSRTGTGKTLAFGLPLVERLAERAREGDYDPKKR---ARGPAILVLAPTRELAKQ 181
Query: 203 VHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262
V + + GL++ C +GG Y QE L++G+DV++ T GR+ DHI+RGN+DLS
Sbjct: 182 VEAELHLLAQTHGLSTTCFHGGVSYGPQENALRRGVDVLVATVGRVIDHIDRGNLDLSDA 241
Query: 263 KFRVLDEADEMLRMGFVEDVELILGKVE----------------DANKVQTLLFSATLPS 306
VLDEADEML MGF +DVE I + + QTLLFSAT PS
Sbjct: 242 YHVVLDEADEMLSMGFADDVERIFSDFDLDDLLGAAPPPADAAAPLRRPQTLLFSATTPS 301
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH--IVLPCSSSARSQVIPDIIRCYSSGG 364
WVK +++K+L+ D + +D+VG+ + +A+T V H +++P AR+ ++ DII GG
Sbjct: 302 WVKKLTSKYLE-DPELVDVVGDARQQAATTVTHKAVLVPRGPDARASLLEDIIAAAQGGG 360
Query: 365 RTIIFTETKESASQLAD----LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
R I+FT TK+ +LA A+ LHGDI Q+QRE TLA FR G F LVAT+VAA
Sbjct: 361 RVIVFTSTKKECDELAGGPAFQRLAAQVLHGDIGQAQRETTLAQFRRGAFTVLVATDVAA 420
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RG+D+ V L++Q PRD E Y+HRSGRTGRAG
Sbjct: 421 RGIDVKGVDLVVQYRTPRDAEGYVHRSGRTGRAG 454
>gi|428169310|gb|EKX38245.1| hypothetical protein GUITHDRAFT_158516 [Guillardia theta CCMP2712]
Length = 397
Score = 309 bits (791), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 160/344 (46%), Positives = 225/344 (65%), Gaps = 17/344 (4%)
Query: 118 VPLREKLKSK----GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
VPL +K+K+K GI SLFP+Q TF ++DG D+V R+RTG GKT+AF LP++E +
Sbjct: 6 VPLSKKVKAKLKECGITSLFPVQVKTFQTLMDGKDVVVRSRTGSGKTIAFALPVIEKIL- 64
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
A+K +GR PS LV+ PTRELA Q+ +F V S C+YGG Q
Sbjct: 65 ----ANKTRKHGRLPSCLVIAPTRELAIQIDREFTRIQPEVA--STCVYGGVSIGMQVSA 118
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L+KG+DVV+GTPGR+ DH+ G +D+S+++ +LDEADEML+MGF +DVE I+ + +
Sbjct: 119 LRKGVDVVVGTPGRLIDHLVNGTLDVSAVETFILDEADEMLKMGFQDDVERIIEYLPPSK 178
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QT L+SAT+P+WVK ++ K+ K D D+VGN+ + S + HI + C + + I
Sbjct: 179 --QTNLWSATMPTWVKDLAQKYCK-DVVFFDMVGNDSTRTSITIEHIAIACGYDSHANAI 235
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKF 410
+++ Y GGR ++F TK +LA+ L AR +HGD+ Q QRE TL FRSGKF
Sbjct: 236 SRVVKKYGKGGRVLVFCRTKLEVDRLANHPSLKTTARVIHGDVSQLQRERTLQDFRSGKF 295
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ LVAT+VAARG+D+ +V+L+IQ P D ++HRSGRTGRAG
Sbjct: 296 LILVATDVAARGIDVPEVELVIQTCVPEDSNTFVHRSGRTGRAG 339
>gi|357511641|ref|XP_003626109.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago
truncatula]
gi|355501124|gb|AES82327.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 753
Score = 308 bits (789), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 164/347 (47%), Positives = 230/347 (66%), Gaps = 10/347 (2%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+S+ + L + L+ +GI LFPIQ L+G D++ RA+TG GKTLAF +PI+
Sbjct: 110 ISKLDLPSQLVDSLRDRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIING 169
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
L +G + S R P LVL PTRELAKQV ++ + A L + C+YGG Y Q
Sbjct: 170 LDDG--QDSGPYSRRRLPRALVLAPTRELAKQVEKE--IKESAPYLKTVCIYGGVSYVTQ 225
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+ L +G+DVV+GTPGR+ D I + LS +++ VLDEAD+ML +GF EDVE+IL K+
Sbjct: 226 QSALSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQMLAVGFEEDVEVILEKL- 284
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K Q++LFSAT+PSWVK ++ K+L ++ TIDLVG+E+ K + ++ + +S+++
Sbjct: 285 -PAKRQSMLFSATMPSWVKKLARKYL-NNPLTIDLVGDEEEKLAEGIKLYAISATSTSKR 342
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRS 407
++ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 343 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQ 402
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
GKF LVAT+VA+RGLDI +V LII E P D E ++HRSGRTGRAG
Sbjct: 403 GKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 449
>gi|143456572|sp|Q0D8N0.2|RH53_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 53
gi|218199081|gb|EEC81508.1| hypothetical protein OsI_24871 [Oryza sativa Indica Group]
gi|222636421|gb|EEE66553.1| hypothetical protein OsJ_23067 [Oryza sativa Japonica Group]
Length = 602
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 162/359 (45%), Positives = 233/359 (64%), Gaps = 13/359 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
V+R IS + E+L ++GI LFPIQ D + G D++GRARTG GKTLAF +PI++
Sbjct: 86 VARLGISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDR 145
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G GR P ++L PTRELA+QV ++F + L S C+YGG P Q
Sbjct: 146 IL----RHNEKNGSGRNPLAIILAPTRELARQVEKEFKE---SAPLDSLCVYGGVPISHQ 198
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+DVV+GTPGRI D + RG ++LS ++F VLDEAD+ML +GF EDVE+I+ +
Sbjct: 199 MRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVVLDEADQMLAVGFDEDVEVIMENLP 258
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
Q++LFSAT+PSW++ I++K+LK D IDLVG+E K + + +
Sbjct: 259 --QNRQSMLFSATMPSWIRKITSKYLK-DPIIIDLVGDEDQKLPEGISLYSIASEHYGKP 315
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLL---PGARALHGDIQQSQREVTLAGFRS 407
++ +I+ +++GG+ I+FT+TK A +LA + +ALHGDI Q+QRE TL+GFR
Sbjct: 316 SILGPLIKEHANGGKCIVFTQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRD 375
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD 466
G+F LVAT+VAARGLDI +V L+I E P E ++HRSGRT RAG + + + +D
Sbjct: 376 GRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTND 434
>gi|224089849|ref|XP_002308835.1| predicted protein [Populus trichocarpa]
gi|222854811|gb|EEE92358.1| predicted protein [Populus trichocarpa]
Length = 556
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/376 (44%), Positives = 237/376 (63%), Gaps = 12/376 (3%)
Query: 94 EAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
+ G +E++ SE +S IS + L KGI LFPIQ + + G D+ GRA
Sbjct: 52 DYGSDEEKGKGSEEGLEISNLGISKEIVNSLAKKGITKLFPIQKAVLEPAMQGKDMFGRA 111
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
RTG GKTLAF +PIL+ + + +K+ G GR P +V+ PTRELA+QV ++F + A
Sbjct: 112 RTGTGKTLAFGIPILDKII----EFNKQHGKGRNPLAMVMAPTRELARQVQKEF--HDSA 165
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
L + CLYGG P +Q +L+ G+DVV+GTPGRI D ++RG+++LS +K+ VLDEAD+M
Sbjct: 166 PSLDTICLYGGVPISSQMRELEYGVDVVVGTPGRIIDLMKRGSLNLSEIKYVVLDEADQM 225
Query: 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
L +GFV+D+E IL ++ K ++ FSAT+PSW+K + K+LK D TIDLVG+ K
Sbjct: 226 LGVGFVDDIETILSRL--PKKRHSMCFSATMPSWIKQLVRKYLK-DPLTIDLVGDSDRKL 282
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALH 390
+ + + A++ ++ +I ++ GG+ I+FTETK A +LA + ALH
Sbjct: 283 ADGITLYSIASDMYAKASILGPLITEHAKGGKCIVFTETKRDADRLAYAMAKNHKCEALH 342
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GDI Q+ RE TL+GFR G F LVAT+VAARGLD+ +V LII PR E ++HRSGRT
Sbjct: 343 GDISQNVRERTLSGFREGHFNILVATDVAARGLDVPNVDLIIHYALPRCSETFVHRSGRT 402
Query: 451 GRAGVEAAETITQVSD 466
GRAG + + D
Sbjct: 403 GRAGKKGTAILIYTQD 418
>gi|357111676|ref|XP_003557638.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like
[Brachypodium distachyon]
Length = 604
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 161/357 (45%), Positives = 233/357 (65%), Gaps = 13/357 (3%)
Query: 101 ERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
E G E V++ IS + E+L ++GI LFPIQ + + G D++GRARTG GKT
Sbjct: 76 EAGAGEDGLEVAKLGISPRIVERLAARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKT 135
Query: 161 LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220
LAF +PI++ + + ++K G GR P ++L PTRELA+QV ++F + L + C
Sbjct: 136 LAFGIPIMDRIL----RHNEKNGTGRNPLAIILAPTRELARQVEKEFKE---SAPLDTLC 188
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG P + Q L G+DVV+GTPGRI D + RGN++LS ++F VLDEAD+ML +GF E
Sbjct: 189 VYGGVPINQQMRTLNYGVDVVVGTPGRIIDLLRRGNLNLSEIQFVVLDEADQMLAVGFDE 248
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVE+I+ K+ Q++LFSAT+PSW++ +S ++LK D IDLVG K +
Sbjct: 249 DVEVIMEKL--PQNRQSMLFSATMPSWIRKLSNQYLK-DPVIIDLVGESDQKLPEGISLY 305
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL---PGARALHGDIQQSQ 397
+ + +S ++ +I+ +++GG+ I+FT+TK A +LA + +ALHGDI Q+Q
Sbjct: 306 SIASENYGKSSILGTLIKEHANGGKCIVFTQTKREADRLAYSMGRSYACQALHGDITQNQ 365
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RE TL+GFR G+F LVAT+VAARGLDI +V L++ E P E ++HRSGRT RAG
Sbjct: 366 RERTLSGFREGRFNILVATDVAARGLDIPNVDLVVHYEIPNSSELFVHRSGRTARAG 422
>gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase [Deinococcus maricopensis DSM 21211]
gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM
21211]
Length = 604
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 210/541 (38%), Positives = 297/541 (54%), Gaps = 87/541 (16%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
I+ L +L +GI PIQA + + G DL+GRARTG GKTLAF +P+++ L P
Sbjct: 7 IAPALAARLAERGILEASPIQAESLPHTMQGRDLIGRARTGTGKTLAFAIPVIDKLE--P 64
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
++ GR P L+L PTRELAKQV E+F A L + +YGGA Y QE L
Sbjct: 65 SRER-----GRLPRALILAPTRELAKQVAEEFK--KSAPELLTLTVYGGAAYGPQEKALY 117
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
G+DV++GTPGR+ DHIERGN+ L +++F +LDEADEML +GF + +E IL +
Sbjct: 118 GGVDVIVGTPGRVIDHIERGNLKLDAVQFAILDEADEMLSVGFADAIESILSATPETR-- 175
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSATLP+ V I K+LK D +DLVG +M+A+ V+H+ + + R++V+ D
Sbjct: 176 QTMLFSATLPAGVTRIGNKYLK-DPLVVDLVGESRMQAAQTVQHLKVKVGRT-RTRVLAD 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
+ Y+ R I+FT TK +LA L A ALHGD+ QSQRE L FR+G+
Sbjct: 234 FLTIYNPE-RAIVFTRTKREVDELAMELIHRGLEAEALHGDLAQSQRERALGSFRAGRVR 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE--------------- 456
LVAT+VAARGLDI ++ L++Q P+D E+Y+HRSGRTGRAG
Sbjct: 293 VLVATDVAARGLDIPEIDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGEREGREL 352
Query: 457 -----------------------------AAETITQVSDSVIPAFKSAAEELLNNSGLSA 487
AA+ + +V + F + AE L + GL A
Sbjct: 353 RNLEYQTGVKFEERSIPTPKEVREASARAAADNVKKVDAEMAQPFMAEAERLFSELGLDA 412
Query: 488 AELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEE-- 544
LA+ALAK G T+ + SLLS E T++L A + + + A ++ R +
Sbjct: 413 ---LARALAKISGVTQPAVNASLLSGEEGMTTIILNAER--MSVARAVALIARSTDIDTR 467
Query: 545 ---KVELVKGMALTADGNGAVFDVP---VADLDLFRSGADNAANVSLEVLKQLPPLQERE 598
K+ L +G GAV D+P VA L L ++ D+ V++EV ++LP L E+
Sbjct: 468 RLGKIRLWRG--------GAVADLPNEAVAPL-LAKNPIDD--EVTIEVAQELPELFEQP 516
Query: 599 Q 599
+
Sbjct: 517 E 517
>gi|168019686|ref|XP_001762375.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686453|gb|EDQ72842.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 689
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 212/558 (37%), Positives = 302/558 (54%), Gaps = 63/558 (11%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
+ E + E AV+ I + + L +GIE LFPIQ D + G DL+GRA+TG G
Sbjct: 37 DNESVDDEDELAVANLGIPQAVVDALAKRGIEKLFPIQRAVLDPAMQGRDLIGRAKTGTG 96
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
KTLAF +PI+ ++ GRAP LVL PTRELAKQV +F A L++
Sbjct: 97 KTLAFGIPIIHNILKAHEADRTSRRSGRAPRALVLAPTRELAKQVEREF--MESAPMLST 154
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C+YGG Q+ +L++G+DV +GTPGRI D IER ++ L + + VLDEAD+ML +GF
Sbjct: 155 VCVYGGVSITTQQRQLQRGVDVAVGTPGRIIDLIERRSLSLRDVSYLVLDEADQMLAVGF 214
Query: 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338
EDVE IL ++ + Q++LFSAT+P+WVK +S K+LKS TIDLVG+ K + ++
Sbjct: 215 EEDVERILEQMPEER--QSMLFSATMPNWVKKLSKKYLKS-PLTIDLVGDSNEKLAEGIK 271
Query: 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL---PGARALHGDIQQ 395
+ + +A+ V+ D+I + S G+TI+FT+TK A +A +L G ALHGDI Q
Sbjct: 272 MLAVCIPPAAKRTVLNDLISVHGSVGKTIVFTQTKRDADDVASVLGRTLGCEALHGDITQ 331
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455
SQRE TLA FR G+F LVAT+VAARGLDI +V L++ E P D E ++HRSGRTGRAG
Sbjct: 332 SQRERTLASFREGRFSVLVATDVAARGLDIPNVDLVVHYEIPNDPETFVHRSGRTGRAGK 391
Query: 456 E--------------------------------------------AAETITQVSDSVIPA 471
+ A I +V+ V
Sbjct: 392 DGTAILMFSENQKRTMRNIEMDVGCKFTLMSPPQMEEVLQASSKAAKAVIQRVNPDVANV 451
Query: 472 FKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKS-RSLLSSLEDHVTVVLEAGKPI--- 527
F S AE+LL G A A ALA G++++ + RSL++ E +T+ + + +
Sbjct: 452 FLSTAEKLLEKEGPGA---FAAALAHLSGFSQLPAPRSLITHEEGLITLRMVRTEELPRA 508
Query: 528 YTPSFAFGVLRRFLPEEKVELVKGMALTADG--NGAVFDVPVADLDLFRSGADNAANVSL 585
+ GVL + + V + + D GAVFD+P + +V +
Sbjct: 509 MSARMVMGVLADIW-DAAADNVGKIRIIDDPKIQGAVFDLPQEIAKELLTKPRREEDV-I 566
Query: 586 EVLKQLPPLQEREQSRGR 603
E +K+LP L + + RGR
Sbjct: 567 ESIKKLPKLVDLDGDRGR 584
>gi|384244948|gb|EIE18444.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 674
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 200/503 (39%), Positives = 277/503 (55%), Gaps = 66/503 (13%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L + I++LFPIQ F G DL+GRARTG GKTLAF LP+LE+L +++ +
Sbjct: 64 LGKRNIKALFPIQKHVFGPARAGRDLIGRARTGSGKTLAFALPVLENLLKENSQSPPQ-- 121
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
GR+P ++L PTRELAKQV ++F A GL C YGG Q +L+ G+DV +G
Sbjct: 122 RGRSPRCIILAPTRELAKQVEKEFQ--ESAPGLNVGCFYGGVDIGGQIRQLRSGVDVAVG 179
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D I R +DLS +F +LDEAD ML MGF EDVE+IL V + QT+LFSAT
Sbjct: 180 TPGRVIDLINRNCLDLSLTRFVILDEADMMLSMGFSEDVEIILDSV--PAERQTMLFSAT 237
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKM-KASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
+PSWVK+I+ K LK + +DLVG+ + K ++ + + + AR ++ D+I ++
Sbjct: 238 MPSWVKNITRKHLK-NPALVDLVGDAQSGKMPDAIKTMAVHVTQEARRSILVDLITVHAL 296
Query: 363 GGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
GG+ I+FT+TK A ++A L+ ALHGDI Q+QRE L FR+GKF LVAT+VA
Sbjct: 297 GGKCIVFTQTKREADEVAASLSLVHPCEALHGDISQAQREQVLKNFRNGKFTALVATDVA 356
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------------------- 454
ARGLDI DV L++ + PRD EA++HRSGRTGRAG
Sbjct: 357 ARGLDIPDVDLVVHYDLPRDTEAFLHRSGRTGRAGKTGSTIAVVLPRDRSYFRRMCAEIK 416
Query: 455 ---------------VEAA-----ETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKA 494
+EA+ + V + VI F AA+ +L A + +A
Sbjct: 417 LKDVEYISSPSPSAVMEASAKQVLRRLDNVDEKVIEFFAPAAKLVLERGDKHDA--MCRA 474
Query: 495 LAKAVGYTEI-KSRSLLSSLEDHVTV-VLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGM 552
LA G E+ K RSL++ VT+ V+ I P ++R + + V + +
Sbjct: 475 LAALSGLIEVPKPRSLITQEVGLVTMRVMSRPGRITLPGHVMTIVRNVIGADGVTGLGRV 534
Query: 553 ALTADG----NGAVFDVP--VAD 569
L D GA FDVP +AD
Sbjct: 535 RLLQDDRAGMEGAAFDVPQEIAD 557
>gi|356569971|ref|XP_003553167.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 643
Score = 304 bits (779), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 166/396 (41%), Positives = 246/396 (62%), Gaps = 12/396 (3%)
Query: 74 PVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLF 133
P+N ++ + + A + EE S+ +++ I+ + + L KGI LF
Sbjct: 52 PLNFRASLVPRAAQFAIERDYSNYEEVSNANSDEGLEIAKLGIAPEIVDALARKGIAKLF 111
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ + + G D++GRARTG GKTLAF +PIL+ +T + + K G GR P LVL
Sbjct: 112 PIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRIT----QFNAKHGQGRNPLALVL 167
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV ++F+ A L + CLYGG P Q +L G+D+ +GTPGRI D +
Sbjct: 168 APTRELARQVEKEFNE--AAPNLATICLYGGMPIQQQMRQLNYGVDIAVGTPGRIIDLLN 225
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
RG ++L +KF VLDEAD+ML++GF E VE IL + N+ QTL+FSAT+PSW+K+I+
Sbjct: 226 RGALNLKDVKFVVLDEADQMLQVGFQEAVEKILEGLS-PNR-QTLMFSATMPSWIKNITR 283
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373
+L ++ TIDLVG+ K + + + S ++ ++ +I +++GG+ I+FT+TK
Sbjct: 284 NYL-NNPLTIDLVGDSDQKLADGISLYSIVSDSYTKAGILAPLITEHANGGKCIVFTQTK 342
Query: 374 ESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430
A +L+ ++ + ALHGDI Q+QRE TLAGFR+ F LVAT+VA+RGLDI +V L
Sbjct: 343 RDADRLSYVMAKSLRCEALHGDISQTQRERTLAGFRNNNFNVLVATDVASRGLDIPNVDL 402
Query: 431 IIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD 466
+I + P E ++HRSGRTGRAG + + + D
Sbjct: 403 VIHYDLPNSSEIFVHRSGRTGRAGKKGSAILFFTQD 438
>gi|224124506|ref|XP_002330040.1| predicted protein [Populus trichocarpa]
gi|222871465|gb|EEF08596.1| predicted protein [Populus trichocarpa]
Length = 735
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 222/637 (34%), Positives = 323/637 (50%), Gaps = 94/637 (14%)
Query: 89 AKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
++ EP + E E +S+ + L + L+++GI LFPIQ L+G D
Sbjct: 83 SETEPNSNTSEDELD-------ISKLGLPQRLVQTLQNRGITHLFPIQRAVLIPTLEGRD 135
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208
L+ RA+TG GKTLAF +PI++ LT + GR P VLVL PTRELAKQV ++
Sbjct: 136 LIARAKTGTGKTLAFGIPIIKRLTEDAELRGSQRRTGRLPKVLVLAPTRELAKQVEKE-- 193
Query: 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268
+ A L++ C+YGG Y Q+ L +G+DVV+GTPGRI D ++ ++ L +++ VLD
Sbjct: 194 IKESAPYLSTVCVYGGVSYATQQNALSRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLD 253
Query: 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
EAD+ML GF EDVE+IL + +K Q++LFSAT+P+WVK ++ K+L + + IDLVG+
Sbjct: 254 EADQMLSFGFEEDVEVILESL--PSKRQSMLFSATMPTWVKKLARKYLDNPLQ-IDLVGD 310
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---G 385
+ K + ++ + +++++ ++ D++ Y+ G +TIIFT TK A +++ L
Sbjct: 311 REEKLAEGIKLYAISTTATSKRTILSDLVTVYAKGEKTIIFTRTKRDADEVSMALTQSIA 370
Query: 386 ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445
+ ALHGDI Q QRE TL GFR GKF LVAT+VA+RGLDI +V LII E P D E ++H
Sbjct: 371 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVH 430
Query: 446 RSGRTGRAGVE----------------------------------------AAETITQVS 465
RSGRTGRAG E + E +
Sbjct: 431 RSGRTGRAGKEGTAILMFTNSQRRTVRSLERDAGCKFEFVSPPAIEELLESSTEQVVATL 490
Query: 466 DSVIPA----FKSAAEELLNNSGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVV 520
+ V P F A++L+ G SA L+ G++ SRSL+S + T+
Sbjct: 491 NGVHPESVEFFTPTAQKLIEEQGTSALAAALAHLS---GFSRPPSSRSLISHEQGWTTLQ 547
Query: 521 LEAGKPIYTPSF-----AFGVLRRFLPEEKVELVKGMALTADG--NGAVFDVPVADLDLF 573
L P Y+ F G L P E+ K + L AD GAVFD+P
Sbjct: 548 L-TRDPTYSRGFLSARSVTGFLSDVYPAAADEIGK-IHLIADERVQGAVFDLPEEIAKEL 605
Query: 574 RSGADNAANVSLEVLKQLPPLQER---EQSRGRFGGGGRGGFG-------------GRGG 617
+ N ++E + +LP LQ+ GRF R G G+G
Sbjct: 606 LNKQLPPGN-TIEKITKLPALQDDGPPSDFYGRFSSRDRPARGGPRGQRGGFRSSRGQGS 664
Query: 618 NRFSGGRGGGFSDRRNDRFSG--GFRGSKGRGGGNRW 652
R+S G ++RR R + R R G+ W
Sbjct: 665 GRYSDDEG---TNRRGGRSNSNENTRSWMSRSSGDDW 698
>gi|348672301|gb|EGZ12121.1| hypothetical protein PHYSODRAFT_547952 [Phytophthora sojae]
Length = 654
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 156/346 (45%), Positives = 230/346 (66%), Gaps = 14/346 (4%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+ F +S + L G+ LFP+Q +FD+++ G+D++GR++TG GKTLAF LPI+E+
Sbjct: 57 IEDFALSQETQRNLLRAGVTHLFPVQTQSFDVMMRGADIMGRSKTGSGKTLAFALPIVET 116
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ A++K R P LVLLPTRELA+QVH++ V A L + + GG Y Q
Sbjct: 117 IL-----ANRKNT--RNPQALVLLPTRELAQQVHDE--VQRVAPQLRTVNVVGGVSYTVQ 167
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
E L++G D+++GTPGRI D +++G++ L + VLDEAD ML+ GF E VE ILG V
Sbjct: 168 ENHLRRGADILVGTPGRIMDLVDKGSLSLDDVDVAVLDEADMMLKFGFQEAVETILGWVP 227
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+ QT+++SAT P WV ++ KFLK + +IDLVG+E + V H + R
Sbjct: 228 EGG--QTVMWSATFPKWVSSMAKKFLK-EPVSIDLVGDEDNQVPATVAHKAINAPVRDRI 284
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG--ARALHGDIQQSQREVTLAGFRSG 408
QV+ +++R ++ G+T++FTETK+ A ++A+ LPG ARALHGD+ Q R T++GFR+G
Sbjct: 285 QVLENVLRLHAHDGQTLVFTETKQEADEIANSLPGQDARALHGDLSQGMRTSTMSGFRNG 344
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
TLV T++AARGLDI +V+L++Q P D E+++HR+GRTGRAG
Sbjct: 345 HVKTLVCTDIAARGLDIANVELVVQYRLPSDKESFVHRAGRTGRAG 390
>gi|356524181|ref|XP_003530710.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 605
Score = 303 bits (777), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/384 (42%), Positives = 241/384 (62%), Gaps = 12/384 (3%)
Query: 74 PVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLF 133
P+N ++ + + A + EE S+ ++ I+ + + L KGI LF
Sbjct: 53 PLNFRASAVPRAAQFAVERDYSNYEEVSGANSDEGLEIANLGIAPQIVDALAKKGIAKLF 112
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ + + G D++GRARTG GKTLAF +PIL+S+ + + K G GR P LVL
Sbjct: 113 PIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDSII----QFNAKHGQGRHPLALVL 168
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV ++F+ A L CLYGG P Q +L G+D+ +GTPGRI D +
Sbjct: 169 APTRELARQVEKEFNE--AAPNLAMICLYGGMPIQQQMRQLNYGVDIAVGTPGRIIDLLN 226
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
RG ++L ++KF VLDEAD+ML++GF E VE IL + N+ QTL+FSAT+PSW+K+I+
Sbjct: 227 RGALNLKNVKFVVLDEADQMLQVGFQEAVEKILEGLS-PNR-QTLMFSATMPSWIKNITR 284
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373
+L ++ TIDLVG+ K + + + S ++ ++ +I +++GG+ I+FT+TK
Sbjct: 285 NYL-NNPLTIDLVGDSDQKLADGISLYSIVSDSYTKAGILAPLITEHANGGKCIVFTQTK 343
Query: 374 ESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430
A +L+ ++ + ALHGDI Q+QRE TLAGFR+ F LVAT+VA+RGLDI +V L
Sbjct: 344 RDADRLSYVMAKSLRCEALHGDISQTQREKTLAGFRNNNFNVLVATDVASRGLDIPNVDL 403
Query: 431 IIQCEPPRDVEAYIHRSGRTGRAG 454
+I + P E ++HRSGRTGRAG
Sbjct: 404 VIHYDLPNSSEIFVHRSGRTGRAG 427
>gi|3775987|emb|CAA09196.1| RNA helicase [Arabidopsis thaliana]
Length = 748
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 209/556 (37%), Positives = 298/556 (53%), Gaps = 76/556 (13%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L E L+ +GI LFPIQ L G D++ RA+TG GKTLAF +PI++
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
LT + GR P LVL PTRELAKQV ++ + A L++ C+YGG Y
Sbjct: 163 RLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE--IKESAPYLSTVCVYGGVSYTI 220
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGRI D IE ++ L +++ VLDEAD+ML +GF E VE IL +
Sbjct: 221 QQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
K Q++LFSAT+P+WVK ++ K+L + IDLVG++ K + ++ + +S+++
Sbjct: 281 --PTKRQSMLFSATMPTWVKKLARKYL-DNPLNIDLVGDQDEKLAEGIKLYAIATTSTSK 337
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
++ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL FR
Sbjct: 338 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFR 397
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS- 465
GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG E + + S
Sbjct: 398 QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSS 457
Query: 466 --------------------------------DSVIPA-----------FKSAAEELLNN 482
D V+ F + A++L
Sbjct: 458 QKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEE 517
Query: 483 SGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRR-- 539
G A L+ G+++ SRSLLS + VT+ L I P+ A G L
Sbjct: 518 KGTDALAAALAHLS---GFSQPPSSRSLLSHEKGWVTLQL-----IRDPTNARGFLSARS 569
Query: 540 ---FLPE---EKVELVKGMALTADG--NGAVFDVP--VADLDLFRSGADNAANVSLEVLK 589
FL + + V + L AD GAVFD+P +A L + D SL ++
Sbjct: 570 VTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLEK---DVPEGNSLSMIT 626
Query: 590 QLPPLQEREQSRGRFG 605
+LPPLQ+ S +G
Sbjct: 627 KLPPLQDDGPSSDNYG 642
>gi|428178088|gb|EKX46965.1| hypothetical protein GUITHDRAFT_159596 [Guillardia theta CCMP2712]
Length = 676
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 176/465 (37%), Positives = 260/465 (55%), Gaps = 72/465 (15%)
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
+ P + F IS + L +GI SLFP+Q TF+ + +G D++ RARTG GKTL F L
Sbjct: 46 DEPGDLRNFPISDQTLDCLAQRGITSLFPVQYSTFNEIFEGRDVLARARTGTGKTLGFSL 105
Query: 166 PILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225
PILE + G AP+ ++L PTRELA+QV + V + + C+YGG
Sbjct: 106 PILE-----------RRSRGSAPACIILSPTRELAQQVERE-------VQVKTLCVYGGV 147
Query: 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285
PYH QE +L+ G+D+V+GTPGR+ D + G +DLS +++ VLDEADEML GF +DVE +
Sbjct: 148 PYHKQEKELQMGVDIVVGTPGRLIDLMNNGALDLSEIRYLVLDEADEMLNRGFADDVETL 207
Query: 286 LGKV-EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
+G + + A++ QTLLFSAT+P WV+ ++ L + + +DLVG K+K + V H+ +
Sbjct: 208 MGGMPQGADRPQTLLFSATVPDWVRKLARTSLVNPHE-VDLVGESKLKVAEGVSHVAVAS 266
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESA----SQLADLLPGARALHGDIQQSQREV 400
++ RS ++ D+I Y + I+F TK A ++L ++ G ALHGDI Q+ RE
Sbjct: 267 AARQRSTLLADLITIYKT-QHAIVFVNTKRDADDLVAELGLIIKGTEALHGDIPQNVREK 325
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------ 454
L GFR+G+ L+AT+VAARGLDI+ + L++ P+D+E +IHR+GRTGRAG
Sbjct: 326 ILNGFRTGRIPVLIATDVAARGLDIDHIDLVVHFGVPKDLEMFIHRAGRTGRAGRTGTSL 385
Query: 455 --------------------------------------VEAAETITQVSDSVIPAFKSAA 476
+ AA+ + V+ + F A
Sbjct: 386 VLFDKAEAFQLTRIEKDAGIKFEKRGVPQPDEIMEASAIRAADNLKTVNPELEGFFLGKA 445
Query: 477 EELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVL 521
+EL G+++ LAKALA GY S+ L + ED + VL
Sbjct: 446 QELYAQDGIAS---LAKALAWMSGYKAPPSKRSLLTGEDELRTVL 487
>gi|3047077|gb|AAC13590.1| contains similarity to the conserved C-terminal domain of helicases
(Pfam: helicase_C.hmm, score: 90.11), similar to
DEAD-box h, partial [Arabidopsis thaliana]
Length = 477
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 164/361 (45%), Positives = 231/361 (63%), Gaps = 10/361 (2%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L E L+ +GI LFPIQ L G D++ RA+TG GKTLAF +PI++
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
Query: 170 SLTN--GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LT G A + GR P LVL PTRELAKQV ++ + A L++ C+YGG Y
Sbjct: 163 RLTEEAGDYTAFRSLRSGRLPKFLVLAPTRELAKQVEKE--IKESAPYLSTVCVYGGVSY 220
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q+ L +G+DVV+GTPGRI D IE ++ L +++ VLDEAD+ML +GF E VE IL
Sbjct: 221 TIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILE 280
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+ K Q++LFSAT+P+WVK ++ K+L + IDLVG++ K + ++ + +S+
Sbjct: 281 NL--PTKRQSMLFSATMPTWVKKLARKYL-DNPLNIDLVGDQDEKLAEGIKLYAIATTST 337
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAG 404
++ ++ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL
Sbjct: 338 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNA 397
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQV 464
FR GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG E + +
Sbjct: 398 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHT 457
Query: 465 S 465
S
Sbjct: 458 S 458
>gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
Length = 666
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 163/347 (46%), Positives = 225/347 (64%), Gaps = 12/347 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+S+ I+ + L +KGI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + + K G GR P LVL PTRELA+QV ++F A L + C+YGG P Q
Sbjct: 177 VI----QYNAKHGRGRNPLALVLAPTRELARQVEKEF--XESAPNLDTLCVYGGTPISRQ 230
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+DVV+GTPGRI D I+RG ++LS ++F VLDEAD+ML +GF EDVE+IL K+
Sbjct: 231 MNSLDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLP 290
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
Q+++FSAT+PSW++ ++ K+LK + TIDLVG+ K + + + ++
Sbjct: 291 QNR--QSMMFSATMPSWIRKLTQKYLK-NPLTIDLVGDSDQKLAEGISLYSIASEMYEKA 347
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG---ARALHGDIQQSQREVTLAGFRS 407
++ +I ++ GG+ I+FT+TK A +LA + ALHGDI QSQRE TL+GFR
Sbjct: 348 SIVGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRD 407
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G F LVAT+VAARGLDI +V LII E P E ++HRSGRTGRAG
Sbjct: 408 GHFNVLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAG 454
>gi|225446899|ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Vitis
vinifera]
Length = 666
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 163/347 (46%), Positives = 225/347 (64%), Gaps = 12/347 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+S+ I+ + L +KGI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + + K G GR P LVL PTRELA+QV ++F A L + C+YGG P Q
Sbjct: 177 VI----QYNAKHGRGRNPLALVLAPTRELARQVEKEF--CESAPNLDTLCVYGGTPISRQ 230
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+DVV+GTPGRI D I+RG ++LS ++F VLDEAD+ML +GF EDVE+IL K+
Sbjct: 231 MNSLDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLP 290
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
Q+++FSAT+PSW++ ++ K+LK + TIDLVG+ K + + + ++
Sbjct: 291 QNR--QSMMFSATMPSWIRKLTQKYLK-NPLTIDLVGDSDQKLAEGISLYSIASEMYEKA 347
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG---ARALHGDIQQSQREVTLAGFRS 407
++ +I ++ GG+ I+FT+TK A +LA + ALHGDI QSQRE TL+GFR
Sbjct: 348 SIVGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRD 407
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G F LVAT+VAARGLDI +V LII E P E ++HRSGRTGRAG
Sbjct: 408 GHFNVLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAG 454
>gi|79328737|ref|NP_001031943.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|108861893|sp|Q8L7S8.2|RH3_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
AltName: Full=Protein EMBRYO DEFECTIVE 1138; Flags:
Precursor
gi|19347898|gb|AAL85971.1| unknown protein [Arabidopsis thaliana]
gi|20259537|gb|AAM13888.1| unknown protein [Arabidopsis thaliana]
gi|20453225|gb|AAM19851.1| At5g26752 [Arabidopsis thaliana]
gi|21689779|gb|AAM67533.1| unknown protein [Arabidopsis thaliana]
gi|23397145|gb|AAN31856.1| unknown protein [Arabidopsis thaliana]
gi|25090432|gb|AAN72300.1| At5g26752/At5g26752 [Arabidopsis thaliana]
gi|27311701|gb|AAO00816.1| Unknown protein [Arabidopsis thaliana]
gi|110739485|dbj|BAF01652.1| hypothetical protein [Arabidopsis thaliana]
gi|332006182|gb|AED93565.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 748
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 209/556 (37%), Positives = 298/556 (53%), Gaps = 76/556 (13%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L E L+ +GI LFPIQ L G D++ RA+TG GKTLAF +PI++
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
LT + GR P LVL PTRELAKQV ++ + A L++ C+YGG Y
Sbjct: 163 RLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE--IKESAPYLSTVCVYGGVSYTI 220
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGRI D IE ++ L +++ VLDEAD+ML +GF E VE IL +
Sbjct: 221 QQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
K Q++LFSAT+P+WVK ++ K+L + IDLVG++ K + ++ + +S+++
Sbjct: 281 --PTKRQSMLFSATMPTWVKKLARKYL-DNPLNIDLVGDQDEKLAEGIKLYAIATTSTSK 337
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
++ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL FR
Sbjct: 338 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFR 397
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS- 465
GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG E + + S
Sbjct: 398 QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSS 457
Query: 466 --------------------------------DSVIPA-----------FKSAAEELLNN 482
D V+ F + A++L
Sbjct: 458 QKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEE 517
Query: 483 SGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRR-- 539
G A L+ G+++ SRSLLS + VT+ L I P+ A G L
Sbjct: 518 KGTDALAAALAHLS---GFSQPPSSRSLLSHEKGWVTLQL-----IRDPTNARGFLSARS 569
Query: 540 ---FLPE---EKVELVKGMALTADG--NGAVFDVP--VADLDLFRSGADNAANVSLEVLK 589
FL + + V + L AD GAVFD+P +A L + D SL ++
Sbjct: 570 VTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLEK---DVPEGNSLSMIT 626
Query: 590 QLPPLQEREQSRGRFG 605
+LPPLQ+ S +G
Sbjct: 627 KLPPLQDDGPSSDNYG 642
>gi|30690260|ref|NP_680225.2| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|20856975|gb|AAM26693.1| At5g26743 [Arabidopsis thaliana]
gi|28416497|gb|AAO42779.1| At5g26743 [Arabidopsis thaliana]
gi|332006181|gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 747
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 209/556 (37%), Positives = 298/556 (53%), Gaps = 76/556 (13%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L E L+ +GI LFPIQ L G D++ RA+TG GKTLAF +PI++
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
LT + GR P LVL PTRELAKQV ++ + A L++ C+YGG Y
Sbjct: 163 RLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE--IKESAPYLSTVCVYGGVSYTI 220
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGRI D IE ++ L +++ VLDEAD+ML +GF E VE IL +
Sbjct: 221 QQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
K Q++LFSAT+P+WVK ++ K+L + IDLVG++ K + ++ + +S+++
Sbjct: 281 --PTKRQSMLFSATMPTWVKKLARKYL-DNPLNIDLVGDQDEKLAEGIKLYAIATTSTSK 337
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
++ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL FR
Sbjct: 338 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFR 397
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS- 465
GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG E + + S
Sbjct: 398 QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSS 457
Query: 466 --------------------------------DSVIPA-----------FKSAAEELLNN 482
D V+ F + A++L
Sbjct: 458 QKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEE 517
Query: 483 SGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRR-- 539
G A L+ G+++ SRSLLS + VT+ L I P+ A G L
Sbjct: 518 KGTDALAAALAHLS---GFSQPPSSRSLLSHEKGWVTLQL-----IRDPTNARGFLSARS 569
Query: 540 ---FLPE---EKVELVKGMALTADG--NGAVFDVP--VADLDLFRSGADNAANVSLEVLK 589
FL + + V + L AD GAVFD+P +A L + D SL ++
Sbjct: 570 VTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLEK---DVPEGNSLSMIT 626
Query: 590 QLPPLQEREQSRGRFG 605
+LPPLQ+ S +G
Sbjct: 627 KLPPLQDDGPSSDNYG 642
>gi|297812857|ref|XP_002874312.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
gi|297320149|gb|EFH50571.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
Length = 748
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 209/556 (37%), Positives = 298/556 (53%), Gaps = 76/556 (13%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L E L+ +GI LFPIQ L G D++ RA+TG GKTLAF +PI++
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
LT S GR P LVL PTRELAKQV ++ + A L++ C+YGG Y
Sbjct: 163 RLTEEAGDYSAFRRSGRLPKFLVLAPTRELAKQVEKE--IKESAPYLSTVCVYGGVSYTI 220
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGRI D IE ++ L +++ VLDEAD+ML +GF E VE IL +
Sbjct: 221 QQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
K Q++LFSAT+P+WVK ++ K+L + IDLVG++ K + ++ + +S+++
Sbjct: 281 --PTKRQSMLFSATMPTWVKKLARKYL-DNPLNIDLVGDQDEKLAEGIKLYAIATTSTSK 337
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
++ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL FR
Sbjct: 338 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFR 397
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS- 465
GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG E + + S
Sbjct: 398 QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSS 457
Query: 466 --------------------------------DSVIPA-----------FKSAAEELLNN 482
D V+ F + A++L
Sbjct: 458 QKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNAVHPDSIKFFSATAQKLYEE 517
Query: 483 SGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRR-- 539
G A L+ G+++ SRSLLS + VT+ L I P+ A G L
Sbjct: 518 KGTDALAAALAHLS---GFSQPPSSRSLLSHEKGWVTLQL-----IRDPTNARGFLSARS 569
Query: 540 ---FLPE---EKVELVKGMALTADG--NGAVFDVP--VADLDLFRSGADNAANVSLEVLK 589
FL + + V + L AD GAVFD+P +A L + + SL ++
Sbjct: 570 VTGFLSDVYRTAADEVGKIFLIADDRVQGAVFDLPEEIAKELLEKEVPEGN---SLSMIT 626
Query: 590 QLPPLQEREQSRGRFG 605
+LPPLQ+ S +G
Sbjct: 627 KLPPLQDDGPSSDNYG 642
>gi|302821639|ref|XP_002992481.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
gi|300139683|gb|EFJ06419.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
Length = 641
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 167/362 (46%), Positives = 236/362 (65%), Gaps = 12/362 (3%)
Query: 96 GVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRART 155
GV+ + + + E A++ +S + L +GI LFPIQ F + G DL+ RA+T
Sbjct: 10 GVQGESKADDEL--AIAGLGVSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKT 67
Query: 156 GQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG 215
G GKTLAF +PI++ + +K+ +++ G P+ LVL PTRELAKQV +F G
Sbjct: 68 GTGKTLAFGIPIMDRIYRSRSKSQRRSFRG--PAALVLAPTRELAKQVETEFMESGKE-- 123
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L + C+YGG +Q+ L +G+DV +GTPGRI D +E+G +DLS ++ VLDEAD+ML
Sbjct: 124 LATVCVYGGVSIMSQKRLLSRGVDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLA 183
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
+GF EDVE I+ ++ + K Q +LFSAT+P WV+ +S KFL + TIDLVG K +
Sbjct: 184 VGFEEDVEKIMEQLPE--KRQNMLFSATMPGWVQKLSRKFL-NKPLTIDLVGESDEKLAE 240
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGD 392
++ + S +A+ +++ D+I Y GG+TI+FT+TK A +++ + G ALHGD
Sbjct: 241 GIKLYAVQTSQAAKRKILSDVITVYGKGGKTIVFTQTKRDAEEVSMAMNRTLGCEALHGD 300
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
I Q QRE TLA FR G+F+ LVAT+VAARGLDI DV LII + PRD E ++HRSGRTGR
Sbjct: 301 IAQFQREKTLAAFREGRFLILVATDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGR 360
Query: 453 AG 454
AG
Sbjct: 361 AG 362
>gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 302 bits (773), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 164/347 (47%), Positives = 227/347 (65%), Gaps = 12/347 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+S+ I+ + L +KGI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + + K G GR P LVL PTRELA+QV ++F A L + C+YGG P Q
Sbjct: 177 VI----QYNAKHGRGRNPLALVLAPTRELARQVEKEF--CESAPNLDTLCVYGGTPISRQ 230
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+DVV+GTPGRI D I+RG ++LS ++F VLDEAD+ML +GF EDVE+IL K+
Sbjct: 231 MNSLDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLP 290
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
N+ Q+++FSAT+PSW++ ++ K+LK + TIDLVG+ K + + + ++
Sbjct: 291 Q-NR-QSMMFSATMPSWIRKLTQKYLK-NPLTIDLVGDSDQKLAEGISLYSIASEMYEKA 347
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG---ARALHGDIQQSQREVTLAGFRS 407
++ +I ++ GG+ I+FT+TK A +LA + ALHGDI QSQRE TL+GFR
Sbjct: 348 SIVGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRD 407
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G F LVAT+VAARGLDI +V LII E P E ++HRSGRTGRAG
Sbjct: 408 GHFNVLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAG 454
>gi|355562543|gb|EHH19137.1| hypothetical protein EGK_19783 [Macaca mulatta]
Length = 690
Score = 301 bits (771), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 190/455 (41%), Positives = 257/455 (56%), Gaps = 58/455 (12%)
Query: 88 KAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS 147
KA E G +QE + A S F IS E++ ++A TF V G
Sbjct: 187 KAASEESNGDIDQEISVEQKEGAFSNFPISE-----------ETIKLLKAKTFHHVYSGK 235
Query: 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207
DL+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL PTRELA QV +DF
Sbjct: 236 DLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRPPQVLVLAPTRELANQVSKDF 291
Query: 208 -DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK V
Sbjct: 292 SDI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQSGKLDLTKLKHVV 348
Query: 267 LDEADEMLRMGFVEDVELILG----KVEDANKVQTLL---------FSATLPSWVKHIST 313
LDE D+ML MGF + VE IL KV + L+ FS T WV +++
Sbjct: 349 LDEVDQMLDMGFADQVEEILSVAYKKVMGFTMLSRLILKTIPKHCFFSETCLHWVFNVAK 408
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTET 372
K++KS + +DL+G + K + V H+ + C + R+ VI D+IR YS GRTIIF ET
Sbjct: 409 KYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCET 468
Query: 373 KESASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429
K+ A +L+ + A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V
Sbjct: 469 KKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVD 528
Query: 430 LIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS--------DSVIPA----FKSAAE 477
L+IQ PP+ + + R GV +A I + S DSV P FK +AE
Sbjct: 529 LVIQSSPPKGI--------KFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 580
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSS 512
+L+ G A E LA LA G + RSL++S
Sbjct: 581 KLIEEKG--AVEALAATLAHISGAMSVDQRSLINS 613
>gi|167386672|ref|XP_001737862.1| ATP-dependent RNA helicase DDX50 [Entamoeba dispar SAW760]
gi|165899191|gb|EDR25838.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba dispar
SAW760]
Length = 689
Score = 301 bits (771), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 181/448 (40%), Positives = 258/448 (57%), Gaps = 40/448 (8%)
Query: 46 KKESSKKRKESEIEEEEERSETSSEL----------GEPVNLKSEKEKKKKKKAKVEPEA 95
K++S K+ +++E+EER E S L G P+N +E + PE+
Sbjct: 2 KRQSLSNGKQRKVDEKEERIEKPSALKGFLIPVTKSGSPIN----EEINGSTPSPNIPES 57
Query: 96 GVEEQERGESEHPNAVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
+ + +P + R +S +E LK +GI SLFPIQ T+ + D+VG+A
Sbjct: 58 PMPDN------NPGSFDRMDPPVSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKA 111
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
+TG GKT++F LP++E L ++ G+ P V+ L PTRELA Q+ E+F
Sbjct: 112 QTGSGKTISFTLPLMERL------RAENERKGKNPRVICLSPTRELAIQIAEEF-TQCSC 164
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
C+YGG Q KL+ G+DV++GTPGR++D +R + L S++ VLDEADEM
Sbjct: 165 GKFKVICVYGGVDIQGQINKLQSGVDVIVGTPGRVRDLFDRQFLKLDSIETIVLDEADEM 224
Query: 274 LRMGFVEDVELIL----GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL-VGN 328
L +GF E+V I+ G V + VQTLLFSAT+P+WVK IS K+L+ D + ID+ VGN
Sbjct: 225 LNIGFKEEVTQIMDFVHGSVPKESTVQTLLFSATMPAWVKEISEKYLRDDAEVIDVTVGN 284
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA---DLLPG 385
++ N +H+ +++Q I D+IR Y GRTI+F +TK + A + +
Sbjct: 285 TQV--PKNAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCAIAINPIFE 342
Query: 386 ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445
+ LHGDIQQ QRE TL GFR KF LVAT+VAARGLDI+ V LII P+D+ Y+H
Sbjct: 343 CQQLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVPKDIPQYVH 402
Query: 446 RSGRTGRAGVEAAETITQVSDSVIPAFK 473
R+GRT RAG E TIT + +P +
Sbjct: 403 RAGRTARAGKEGT-TITLFTRKELPQLQ 429
>gi|326527477|dbj|BAK08013.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 614
Score = 301 bits (771), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 159/347 (45%), Positives = 229/347 (65%), Gaps = 13/347 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
V++ IS + ++L +KGI LFPIQ + + G D+VGRA+TG GKTLAF +PI+++
Sbjct: 107 VAKLGISSEIVKRLAAKGITKLFPIQKAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIMDA 166
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++ GR P + L PTRELAKQV ++F + L + C+YGG P Q
Sbjct: 167 II----RHNEINKPGRLPLAICLAPTRELAKQVDKEFV---DSSPLQTLCVYGGTPIQQQ 219
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+DVV+GTPGR+ D ++RG ++LS ++F VLDEAD+ML +GF EDVE+IL KV
Sbjct: 220 MRALDYGVDVVVGTPGRVIDLLKRGALNLSMVQFVVLDEADQMLSVGFDEDVEIILNKV- 278
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K QTL+FSAT+P W++ + K+LK D +DLVG + K + + + + + A+
Sbjct: 279 -PPKRQTLMFSATMPPWIRKLMQKYLK-DPVIVDLVGEDDQKLAEGISLLSIATENHAKP 336
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLL---PGARALHGDIQQSQREVTLAGFRS 407
V+ +I+ ++ GG+ I+FT+TK A +L+ + +ALHGDI Q QRE TL GFR
Sbjct: 337 AVLAQLIQDHAKGGKCIVFTQTKRDADRLSYTMGRTVQCQALHGDITQGQRERTLQGFRE 396
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G+F TL+AT+VAARGLDI +V L+I E P + E ++HRSGRTGRAG
Sbjct: 397 GRFSTLIATDVAARGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAG 443
>gi|356499321|ref|XP_003518490.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 595
Score = 301 bits (771), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 165/396 (41%), Positives = 240/396 (60%), Gaps = 15/396 (3%)
Query: 74 PVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLF 133
P+N ++ + + P EE +G ++ +++ IS + L KGI LF
Sbjct: 56 PLNFRASSCHRAEYAVDDFP---YEEGSKGNADEGLEIAKLGISQDIVSALAKKGITKLF 112
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ + + G D++GRARTG GKTLAF +PI++ + + + K G GR P LVL
Sbjct: 113 PIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVI----QFNAKHGRGRDPLALVL 168
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV +F A L + C+YGG P Q +L G+D+ +GTPGRI D +
Sbjct: 169 APTRELARQVESEF--CESAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLN 226
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
RG ++L ++F VLDEAD+ML++GF EDVE IL ++ K QTL+FSAT+PSW+K IS
Sbjct: 227 RGALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPP--KRQTLMFSATMPSWIKQISR 284
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373
+L ++ TIDLVG+ K + + + ++ ++ +I ++ GG+ I+FT+TK
Sbjct: 285 NYL-NNPLTIDLVGDSDQKLADGISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQTK 343
Query: 374 ESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430
A +L+ + ALHGDI Q+QRE TLAGFR+G F LVAT+VA+RGLDI +V L
Sbjct: 344 RDADRLSYAMARSVKCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDL 403
Query: 431 IIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD 466
+I + P + E ++HRSGRTGRAG + + D
Sbjct: 404 VIHYDLPNNSEIFVHRSGRTGRAGKKGTAILVYTED 439
>gi|242047398|ref|XP_002461445.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
gi|241924822|gb|EER97966.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
Length = 602
Score = 301 bits (771), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 158/348 (45%), Positives = 231/348 (66%), Gaps = 15/348 (4%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
++R IS + EKL ++GI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 88 IARLWISPRIVEKLAARGITKLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDK 147
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G GR P +VL PTRELA+QV ++F + L + C+YGG P + Q
Sbjct: 148 ILS----HNEKNGNGRNPLAIVLAPTRELARQVEKEFRE---SAPLDTLCVYGGVPINQQ 200
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+D+V+GTPGRI D + RG ++LS ++F VLDEAD+ML +GF EDVE+I+ ++
Sbjct: 201 MRVLNYGVDIVVGTPGRIIDLLRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQL- 259
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
Q++LFSAT+PSW++ IS K+L +D IDLVG+ K + + + +
Sbjct: 260 -PQNRQSMLFSATMPSWIRKISNKYL-NDPVIIDLVGDSDQKLPEGISLYSIASDNFGKQ 317
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFR 406
++ +I+ +++GG+ I+FT+TK A +LA ++ P +ALHGDI Q+QRE TL+GFR
Sbjct: 318 SILGPLIKEHANGGKCIVFTQTKRDADRLAYVMGRSYP-CQALHGDISQNQRERTLSGFR 376
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G+F LVAT+VAARGLDI +V L++ E P E ++HRSGRT RAG
Sbjct: 377 DGRFNILVATDVAARGLDIPNVDLVVHYEIPNTSELFVHRSGRTARAG 424
>gi|125537372|gb|EAY83860.1| hypothetical protein OsI_39082 [Oryza sativa Indica Group]
Length = 630
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 160/347 (46%), Positives = 229/347 (65%), Gaps = 13/347 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
V++ IS + +L S+GI LFPIQ + + G D+VGRA+TG GKTLAF +PIL++
Sbjct: 100 VAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDA 159
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G+ P +VL PTRELAKQV +F + + + C+YGG P Q
Sbjct: 160 II----RHNEKNSPGKFPLAIVLAPTRELAKQVEREFS---DSSNVETICVYGGTPISQQ 212
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+L G+DVVIGTPGR+ D ++RG ++LS ++F VLDEAD+ML +GF EDVE IL +V
Sbjct: 213 IRQLNYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVP 272
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K QTL+FSAT+P+W++ ++ K+LK + TIDLVG + K + + + A+
Sbjct: 273 P--KRQTLMFSATMPTWIRRLTQKYLK-NPVTIDLVGEDDQKLAEGISLYSIASEGHAKP 329
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRS 407
V+ ++I+ ++ GG+ I+FT+TK A +L+ + +ALHGDI Q+QRE TL GFR
Sbjct: 330 AVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFRE 389
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G F L+AT+VAARGLDI +V L+I E P E ++HRSGRTGRAG
Sbjct: 390 GHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAG 436
>gi|302817066|ref|XP_002990210.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
gi|300142065|gb|EFJ08770.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
Length = 640
Score = 301 bits (770), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 164/348 (47%), Positives = 229/348 (65%), Gaps = 10/348 (2%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++ +S + L +GI LFPIQ F + G DL+ RA+TG GKTLAF +PI++
Sbjct: 4 AIAGLGVSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKTGTGKTLAFGIPIMD 63
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ +K+ +++ G P+ LVL PTRELAKQV +F G L + C+YGG +
Sbjct: 64 RIYRSRSKSQRRSFRG--PAALVLAPTRELAKQVETEFMESGKE--LATVCVYGGVSIMS 119
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DV +GTPGRI D +E+G +DLS ++ VLDEAD+ML +GF EDVE I+ ++
Sbjct: 120 QKRLLSRGVDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLAVGFEEDVEKIMEQL 179
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ K Q +LFSAT+P WV+ +S KFL + TIDLVG K + ++ + S +A+
Sbjct: 180 PE--KRQNMLFSATMPGWVQKLSRKFL-NKPLTIDLVGESDEKLAEGIKLYAVQTSQAAK 236
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
+++ D+I Y GG+TI+FT+TK A +++ + G ALHGDI Q QRE TLA FR
Sbjct: 237 RKILSDVITVYGKGGKTIVFTQTKRDAEEVSMAMNRTLGCEALHGDIAQFQREKTLAAFR 296
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G+F+ LVAT+VAARGLDI DV LII + PRD E ++HRSGRTGRAG
Sbjct: 297 EGRFLILVATDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGRAG 344
>gi|449463625|ref|XP_004149532.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 593
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 162/359 (45%), Positives = 229/359 (63%), Gaps = 12/359 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+ + I+ + L KGI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 109 IGKLGIAPEIVSALARKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 168
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
L + + K G GR P LVL PTRELA+QV ++F A L + C+YGGAP Q
Sbjct: 169 LI----QFNAKNGRGRNPLALVLAPTRELARQVEKEFQE--AAPSLDTICVYGGAPISQQ 222
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+L G+D+ +GTPGR+ D + RG+++LS ++F VLDEAD+ML++GF EDVE IL ++
Sbjct: 223 MRQLDYGVDIAVGTPGRLIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERL- 281
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K Q+++FSAT+PSW+ +S +L ++ TIDLVG+ K + + + + ++
Sbjct: 282 -PQKRQSMMFSATMPSWILKLSRNYL-NNPLTIDLVGDSDQKLADGISLFSVVSETYGKA 339
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG---ARALHGDIQQSQREVTLAGFRS 407
+I +I + GG+ IIFT+TK A +LA + ALHGDI QSQRE TL+GFR
Sbjct: 340 SIIGPLITEHGKGGKCIIFTQTKRDADRLAYAMGRNLRCEALHGDISQSQRERTLSGFRD 399
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD 466
G+F LVAT+VAARGLDI +V L+I E P + E ++HRSGRTGRAG + + + D
Sbjct: 400 GRFNVLVATDVAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSVILIYSQD 458
>gi|323453440|gb|EGB09312.1| hypothetical protein AURANDRAFT_895, partial [Aureococcus
anophagefferens]
Length = 591
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 232/574 (40%), Positives = 310/574 (54%), Gaps = 102/574 (17%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD-GSDLVGRARTGQGKTLAFVLPIL 168
A+ F +S R+ L +GI+ LFPIQA TF + D G DL+ RARTG GKTLAF LP++
Sbjct: 1 ALGDFALSTGTRQALDKRGIKVLFPIQAATFAAIFDAGKDLLARARTGTGKTLAFALPVV 60
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPY 227
E L KA++ RAP LVL PTRELA+QV DF DV G L + C+YGG+ Y
Sbjct: 61 EKLL--LDKATQ-----RAPRALVLAPTRELAQQVLGDFSDVAHGR--LRTLCVYGGSAY 111
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
L++G+DVV+GTPGR D IE+G +D S+L F VLDEAD+ML MGF +++E I
Sbjct: 112 GPSCDALRRGVDVVVGTPGRTMDLIEKGVLDASALSFAVLDEADQMLDMGFKDELEKIFA 171
Query: 288 KVEDANKV----QTLLFSATLPSWVKHISTKFLKSDK--KTIDLVGNEK----------- 330
+ A Q LLFSATLP WV++I+ + ++D + IDLVG+
Sbjct: 172 AMAPAGAPARARQLLLFSATLPPWVRNIAKAYAQTDASLEAIDLVGSGGGDARDGLGGIV 231
Query: 331 MKASTNVRHIVLPCSS-SARSQVIPDIIRCYSSGG--RTIIFTETKESASQLAD---LLP 384
+AST+V H +P +S S +VI D++ Y G R ++F ETK + + D +
Sbjct: 232 CQASTDVSHKCVPVASWSMNHKVINDVVGAYGLNGAARCVLFCETKAECNDVVDSKEITY 291
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR------ 438
RALHGDI Q+ RE T+A FR+G+F LVAT+VAARGLD+ V+L++ +PP
Sbjct: 292 ERRALHGDIPQALREKTMAAFRAGQFKILVATDVAARGLDMV-VELVVNNKPPATRSGWA 350
Query: 439 DVEAYIHRS---GRTG-------------RAGVEAAETITQ------------------- 463
D E Y+HRS GR G RA +E E T+
Sbjct: 351 DAETYVHRSGRTGRAGRKGTCVTLYQTKHRATLEEIERKTKNAFDWVGAPRARDVLSAAA 410
Query: 464 ---------VSDSVIPAFKS----AAEELLNNSGLSAA----ELLAKALAKAVGYTEIK- 505
V+ S +P F+ A G SA E L ALAK GY K
Sbjct: 411 DAALRAVEDVAPSALPCFEDRAAALAATFAGRHGSSATGGYAEALRAALAKLAGYERGKP 470
Query: 506 -SRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFD 564
RSLL++ E +VT AG PI++ S+ + LRR L E + +K M L A+G+GAVFD
Sbjct: 471 ADRSLLTNSEHYVTCHYAAGLPIHSISYVWNFLRRELKPEVCDALKAMQLVAEGDGAVFD 530
Query: 565 VPV-ADLDLFRSGADNAANVSLEVLKQLPPLQER 597
P A DL G D VS+++ LP L+ER
Sbjct: 531 APASAKADLV--GLD---GVSVDI-DDLPKLKER 558
>gi|122227760|sp|Q0ILZ4.1|RH9_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 9
Length = 628
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 160/347 (46%), Positives = 229/347 (65%), Gaps = 13/347 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
V++ IS + +L S+GI LFPIQ + + G D+VGRA+TG GKTLAF +PIL++
Sbjct: 100 VAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDA 159
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G+ P +VL PTRELAKQV +F + + + C+YGG P Q
Sbjct: 160 II----RHNEKNSPGKFPLAIVLAPTRELAKQVEREFS---DSSNVETICVYGGTPISQQ 212
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+L G+DVVIGTPGR+ D ++RG ++LS ++F VLDEAD+ML +GF EDVE IL +V
Sbjct: 213 IRQLNYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVP 272
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K QTL+FSAT+P+W++ ++ K+LK + TIDLVG + K + + + A+
Sbjct: 273 P--KRQTLMFSATMPTWIQRLTQKYLK-NPVTIDLVGEDDQKLAEGISLYSIASEGHAKP 329
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRS 407
V+ ++I+ ++ GG+ I+FT+TK A +L+ + +ALHGDI Q+QRE TL GFR
Sbjct: 330 AVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFRE 389
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G F L+AT+VAARGLDI +V L+I E P E ++HRSGRTGRAG
Sbjct: 390 GHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAG 436
>gi|22135801|gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]
Length = 748
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 208/556 (37%), Positives = 297/556 (53%), Gaps = 76/556 (13%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L E L+ +GI LFPIQ L G D++ RA+TG GKTLAF +PI++
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
LT + GR P LVL PTRELAKQV ++ + A L++ C+YGG Y
Sbjct: 163 RLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE--IKESAPYLSTVCVYGGVSYTI 220
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGRI D IE ++ L +++ VLDEAD+ML +GF E VE IL +
Sbjct: 221 QQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
K Q++LFSAT+P+WVK ++ K+L + IDLVG++ K + ++ + +S+++
Sbjct: 281 --PTKRQSMLFSATMPTWVKKLARKYL-DNPLNIDLVGDQDEKLAEGIKLYAIATTSTSK 337
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
++ D+I Y+ GG+ I+FT+TK A +++ L + ALHGDI Q QRE TL FR
Sbjct: 338 RTILSDLITVYAKGGKNIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFR 397
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS- 465
GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG E + + S
Sbjct: 398 QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSS 457
Query: 466 --------------------------------DSVIPA-----------FKSAAEELLNN 482
D V+ F + A++L
Sbjct: 458 QKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEE 517
Query: 483 SGLSAAELLAKALAKAVGYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRR-- 539
G A L+ G+++ SRSLLS + VT+ L I P+ A G L
Sbjct: 518 KGTDALAAALAHLS---GFSQPPSSRSLLSHEKGWVTLQL-----IRDPTNARGFLSARS 569
Query: 540 ---FLPE---EKVELVKGMALTADG--NGAVFDVP--VADLDLFRSGADNAANVSLEVLK 589
FL + + V + L AD GAVFD+P +A L + D SL ++
Sbjct: 570 VTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLEK---DVPEGNSLSMIT 626
Query: 590 QLPPLQEREQSRGRFG 605
+LPPLQ+ S +G
Sbjct: 627 KLPPLQDDGPSSDNYG 642
>gi|403331283|gb|EJY64580.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 1264
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 182/438 (41%), Positives = 252/438 (57%), Gaps = 27/438 (6%)
Query: 33 ALTEKS-SDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKV 91
++ +KS S K S+ S K R+ +EER ++ ++ N +S K K +
Sbjct: 354 SMKDKSRSQSKDSRNHHSQKDRRIQSSFHQEERDDSEKDMRRMDNNRS-KSKYPSEVVSN 412
Query: 92 EPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
+ + + G+S+ V+ IS LK +GI+ LFPIQ F + +G DL+G
Sbjct: 413 KKDMSSGNEVYGDSQEGQFVNYPEISQKSVAILKERGIKYLFPIQQECFYPIYEGKDLIG 472
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF---- 207
R TG GKTLAFVLP+LE L + +KK G R +VL PTRELA QV F
Sbjct: 473 RDLTGSGKTLAFVLPLLERL-----RKTKKLG-TRKIQAIVLAPTRELAVQVQNVFAQMK 526
Query: 208 ---DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264
D Y + +YGG P Q L +G+D+ +GT GR+ DHIERGNID S +K
Sbjct: 527 HFDDEY------RTLTVYGGVPIDPQTSALTRGVDIFVGTTGRVLDHIERGNIDFSGIKS 580
Query: 265 RVLDEADEMLRMGFVEDVELILGKVEDANK--VQTLLFSATLPSWVKHISTKFLKSDKKT 322
LDEAD ML++GF EDV+ IL + D + +Q LFSAT+P WV+ I+ + L+
Sbjct: 581 VFLDEADVMLKLGFKEDVDKILSIIRDQCREDIQICLFSATIPPWVRDIAQEHLRQGYTM 640
Query: 323 IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQL--A 380
+DL + K K + VRHI + C QVI D++ Y +GGR+I+FT+TK A+ L +
Sbjct: 641 VDLAKDLKNKTAKRVRHIAINCPFYKTEQVILDLLMMYGTGGRSIVFTKTKSDANSLISS 700
Query: 381 DLLP--GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR 438
D + +HGDI Q RE+TL F+ G+ LVAT+VA+RGLDI +V+LI+Q EPP+
Sbjct: 701 DRFSKNDIQVMHGDIPQHSREMTLRAFKEGRLKVLVATDVASRGLDIPNVELIVQTEPPQ 760
Query: 439 DVEAYIHRSGRTGRAGVE 456
D E YIHR+GRT RAG E
Sbjct: 761 DPETYIHRAGRTARAGKE 778
>gi|449505807|ref|XP_004162573.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 611
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/359 (45%), Positives = 229/359 (63%), Gaps = 12/359 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+ + I+ + L KGI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 109 IGKLGIAPEIVSALARKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 168
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
L + + K G GR P LVL PTRELA+QV ++F A L + C+YGGAP Q
Sbjct: 169 LI----QFNAKNGRGRNPLALVLAPTRELARQVEKEFQE--AAPSLDTICVYGGAPISQQ 222
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+L G+D+ +GTPGR+ D + RG+++LS ++F VLDEAD+ML++GF EDVE IL ++
Sbjct: 223 MRQLDYGVDIAVGTPGRLIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERL- 281
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K Q+++FSAT+PSW+ +S +L ++ TIDLVG+ K + + + + ++
Sbjct: 282 -PQKRQSMMFSATMPSWILKLSRNYL-NNPLTIDLVGDSDQKLADGISLFSVVSETYGKA 339
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG---ARALHGDIQQSQREVTLAGFRS 407
+I +I + GG+ IIFT+TK A +LA + ALHGDI QSQRE TL+GFR
Sbjct: 340 SIIGPLITEHGKGGKCIIFTQTKRDADRLAYAMGRNLRCEALHGDISQSQRERTLSGFRD 399
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD 466
G+F LVAT+VAARGLDI +V L+I E P + E ++HRSGRTGRAG + + + D
Sbjct: 400 GRFNVLVATDVAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSVILIYSQD 458
>gi|222617461|gb|EEE53593.1| hypothetical protein OsJ_36838 [Oryza sativa Japonica Group]
Length = 676
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/347 (46%), Positives = 229/347 (65%), Gaps = 13/347 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
V++ IS + +L S+GI LFPIQ + + G D+VGRA+TG GKTLAF +PIL++
Sbjct: 148 VAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDA 207
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G+ P +VL PTRELAKQV +F + + + C+YGG P Q
Sbjct: 208 II----RHNEKNSPGKFPLAIVLAPTRELAKQVEREFS---DSSNVETICVYGGTPISQQ 260
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+L G+DVVIGTPGR+ D ++RG ++LS ++F VLDEAD+ML +GF EDVE IL +V
Sbjct: 261 IRQLNYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVP 320
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K QTL+FSAT+P+W++ ++ K+LK + TIDLVG + K + + + A+
Sbjct: 321 P--KRQTLMFSATMPTWIQRLTQKYLK-NPVTIDLVGEDDQKLAEGISLYSIASEGHAKP 377
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRS 407
V+ ++I+ ++ GG+ I+FT+TK A +L+ + +ALHGDI Q+QRE TL GFR
Sbjct: 378 AVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFRE 437
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G F L+AT+VAARGLDI +V L+I E P E ++HRSGRTGRAG
Sbjct: 438 GHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAG 484
>gi|326534262|dbj|BAJ89481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 155/347 (44%), Positives = 228/347 (65%), Gaps = 13/347 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
V+R IS + E+L ++GI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 89 VARLGISPRIVERLAARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDR 148
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G GR P ++L PTRELA+QV ++F + L + C+YGG P Q
Sbjct: 149 IL----RHNEKNGSGRNPLAIILAPTRELARQVEKEFRE---SAPLDTLCVYGGVPISQQ 201
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+DVV+GTPGR+ D + RG ++LS ++F VLDEAD+ML +GF E VE+I+ K+
Sbjct: 202 MRTLNYGVDVVVGTPGRVIDLLRRGVLNLSEIQFMVLDEADQMLAVGFDEAVEVIMEKL- 260
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
Q++LFSAT+PSW++ ++ ++LK D IDLVG+ + K + + + +S
Sbjct: 261 -PQNRQSMLFSATMPSWIRKLTNQYLK-DPVIIDLVGDSEQKLPEGISLYSIVSENYGKS 318
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLL---PGARALHGDIQQSQREVTLAGFRS 407
++ +I+ ++ GG+ I+FT+TK A +LA + +ALHGDI Q+QRE TL+GFR
Sbjct: 319 SILGPLIKEHADGGKCIVFTQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRD 378
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G+F LVAT+VAARGLDI +V L++ E P E ++HRSGRT RAG
Sbjct: 379 GRFNILVATDVAARGLDIPNVDLVVHYEIPNSSELFVHRSGRTARAG 425
>gi|357494025|ref|XP_003617301.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355518636|gb|AET00260.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 802
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 160/372 (43%), Positives = 235/372 (63%), Gaps = 12/372 (3%)
Query: 98 EEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQ 157
EE + S+ +++ IS + L+ KGI LFPIQ + + G D++GRARTG
Sbjct: 69 EEPSKSNSDEGLEIAKLGISQDIVSALEKKGITKLFPIQRAVLEPAMQGRDMIGRARTGT 128
Query: 158 GKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217
GKTLAF +PI++ + + + K G G+ P LVL PTRELAKQV ++F Y A L
Sbjct: 129 GKTLAFGIPIMDKII----QFNAKHGRGKDPLALVLAPTRELAKQVEKEF--YEAAPNLD 182
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+ C+YGG P Q +L G+D+ +GTPGRI D + RG ++L ++F +LDEAD+ML++G
Sbjct: 183 TICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVILDEADQMLQVG 242
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F EDVE IL ++ QTL+FSAT+P+W+K ++ +LK + TIDLVG+ K + +
Sbjct: 243 FQEDVEKILERLPAER--QTLMFSATMPTWIKQLTRNYLK-NPLTIDLVGDSDQKLADGI 299
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQ 394
+ + ++ +I +I+ ++ GG+ I+FT+TK A +++ + + ALHGDI
Sbjct: 300 SLYSILSDAYVKAGIIVPLIKEHAKGGKCIVFTQTKRDADRISHGMSKSIPCEALHGDIS 359
Query: 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
Q QRE TLAGFR+G F LVAT+VA+RGLDI +V L+I E P + E ++HRSGRTGRAG
Sbjct: 360 QIQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAG 419
Query: 455 VEAAETITQVSD 466
+ + D
Sbjct: 420 KKGTAILVYTQD 431
>gi|414868924|tpg|DAA47481.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 1 [Zea mays]
gi|414868925|tpg|DAA47482.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 2 [Zea mays]
Length = 611
Score = 298 bits (762), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 158/347 (45%), Positives = 230/347 (66%), Gaps = 13/347 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+++ IS + E+L SKGI LFPIQ + + G D+VGRA+TG GKTLAF +PI+++
Sbjct: 96 IAKLGISSKIVERLASKGITKLFPIQRAVLEPAMQGRDMVGRAKTGTGKTLAFGIPIMDA 155
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G+ P +VL PTRELAKQV +F + L + C+YGG P Q
Sbjct: 156 II----RHNEKYKPGKFPLAIVLAPTRELAKQVEREF---LDSSPLETLCVYGGTPIMQQ 208
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
KL G+DVVIGTPGR+ D ++RG++ L+ ++F VLDEAD+ML +GF DVE IL +V
Sbjct: 209 IRKLNYGVDVVIGTPGRVIDLLKRGSLSLAEIRFVVLDEADQMLSVGFDLDVETILERVP 268
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
QTL+FSAT+P+W++ ++ K+L ++ T+DLVG + K + + + + + +
Sbjct: 269 PQR--QTLMFSATMPTWIRKLTQKYL-NNPVTVDLVGEDDQKLAEGISLLAVSSENREKP 325
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRS 407
V+ ++I+ ++ GG+ I+FT+TK A +L+ + ALHGDI QSQRE TLAGFR
Sbjct: 326 AVLGELIKEHAKGGKCIVFTQTKRDADRLSHNMSRSFQCEALHGDISQSQRERTLAGFRD 385
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G+F L+AT+VAARGLDI +V L+I E P E ++HRSGRTGRAG
Sbjct: 386 GRFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAG 432
>gi|356554094|ref|XP_003545384.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 610
Score = 298 bits (762), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 239/397 (60%), Gaps = 16/397 (4%)
Query: 74 PVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNA-VSRFRISVPLREKLKSKGIESL 132
P+N +S + + P EE +G + +++ IS + L KGI L
Sbjct: 50 PLNFRSSSCHRAEYAVDDFP---YEEGSKGNAADEGLEIAKLGISEDIVSALAKKGITKL 106
Query: 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192
FPIQ + + G D++GRARTG GKTLAF +PI++ + + + K G GR P LV
Sbjct: 107 FPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKII----QFNAKHGRGRDPLALV 162
Query: 193 LLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
L PTRELA+QV +F A L + C+YGG P Q +L G+D+ +GTPGRI D +
Sbjct: 163 LAPTRELARQVETEF--CESAPNLDTICVYGGTPISRQMRELDYGVDIAVGTPGRIIDLL 220
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
RG ++L ++F VLDEAD+ML++GF EDVE IL ++ K QTL+FSAT+PSW+K IS
Sbjct: 221 NRGALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPP--KRQTLMFSATMPSWIKQIS 278
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTET 372
+L ++ TIDLVG+ K + + + ++ ++ +I ++ GG+ I+FT+T
Sbjct: 279 RNYL-NNPLTIDLVGDSDQKLADGISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQT 337
Query: 373 KESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429
K A +L+ + ALHGDI Q+QRE TLAGFR+G F LVAT+VA+RGLDI +V
Sbjct: 338 KRDADRLSYTMARSVKCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVD 397
Query: 430 LIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD 466
L+I + P + E ++HRSGRTGRAG + + D
Sbjct: 398 LVIHYDLPNNSEIFVHRSGRTGRAGKKGTAILVYTED 434
>gi|357156628|ref|XP_003577522.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Brachypodium
distachyon]
Length = 613
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/347 (45%), Positives = 229/347 (65%), Gaps = 13/347 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
V++ IS + +L ++GI LFPIQ + + G D++GRA+TG GKTLAF +PIL++
Sbjct: 101 VAKLGISDEIVTRLAARGITRLFPIQRAVLEPAMQGQDMIGRAKTGTGKTLAFGIPILDA 160
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ K +KK GR P + L PTRELAKQV ++F + L + C+YGG P Q
Sbjct: 161 II----KHNKKHQPGRFPLAICLAPTRELAKQVDKEF---VDSSPLKTLCVYGGTPIQHQ 213
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+L+ G+D+V+GTPGR+ D ++RG ++LS ++F VLDEAD+ML +GF E VE IL V
Sbjct: 214 IRELQYGVDIVVGTPGRVIDLLKRGALNLSMVQFVVLDEADQMLSVGFDEAVEEILQSV- 272
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
K QTL+FSAT+P+W++ ++ K+LK + T+DLVG + K + + + + + A+
Sbjct: 273 -PVKRQTLMFSATMPTWIRKLTQKYLK-NPATVDLVGEDDQKLAEGISLLSIATENHAKP 330
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLL---PGARALHGDIQQSQREVTLAGFRS 407
V+ +I+ + GG+ I+FT+TK A +LA + + LHGDI Q QRE TLAGFR
Sbjct: 331 AVLAQLIQDHGKGGKCIVFTQTKRDADRLAFTMGRSIQCQPLHGDISQVQRERTLAGFRD 390
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G+F TL+AT+VAARGLDI +V L+I E P E ++HRSGRTGRAG
Sbjct: 391 GRFSTLIATDVAARGLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAG 437
>gi|449517104|ref|XP_004165586.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like, partial [Cucumis sativus]
Length = 726
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 221/610 (36%), Positives = 319/610 (52%), Gaps = 77/610 (12%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L + L+ +GI LFPIQ L+G DL+ RA+TG GKTLAF +PIL+
Sbjct: 113 AISKLNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPILK 172
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
LT ++ R P VLVL PTRELAKQV ++ + A L + C+YGG Y
Sbjct: 173 KLTED-DESRSLRRRSRLPRVLVLTPTRELAKQVEKE--IKESAPYLNTVCVYGGVSYIT 229
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGR+ D I +++L +++ VLDEAD+ML +GF EDVE+IL K+
Sbjct: 230 QQNALSRGVDVVVGTPGRLIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKL 289
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
++ Q +LFSAT+P+WVK ++ K+L + TIDLVG++ K + ++ + +++++
Sbjct: 290 --PSQRQNMLFSATMPTWVKKLARKYL-DNPLTIDLVGDQDEKLAEGIKLHAILTTATSK 346
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
++ D++ Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 347 QTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFR 406
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA-------- 458
GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG E
Sbjct: 407 QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNS 466
Query: 459 --ETITQVSDSVIPAFKSA----AEELLNNSGLSAAELLAKALAKAV------------- 499
T+ + V F+ A EE+L +S L +++
Sbjct: 467 QRRTVRSLERDVGCKFEFANPPGMEEVLKSSAEQVVVTLRGVHPESIEYFTPTAQKLIDE 526
Query: 500 --------------GYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSF-----AFGVLRR 539
G+T SRSL++ + VT+ L P Y+ F G L
Sbjct: 527 QGLGALAAALAQLSGFTHPPSSRSLINHEQGWVTLQL-TRDPSYSRGFLSARSVTGFLSD 585
Query: 540 FLPEEKVELVKGMALTADG--NGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQER 597
E+ K + L AD NGAVFD+P + N L++ K LPPLQ+
Sbjct: 586 VYSPAADEIGK-IHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKITK-LPPLQDD 643
Query: 598 ---EQSRGRF------------GGGGRGGFGGRGGNRFSGGRGGGFSDRRNDRFSGGFRG 642
+ GRF G G G +R S G FS R+ R + +G
Sbjct: 644 GPPSDNYGRFSGRERSSRNSSRDRRGLKTSRGWGSSRDSDDNGDIFSRNRSFR-TNNSKG 702
Query: 643 SKGRGGGNRW 652
R G+ W
Sbjct: 703 RNFRSSGDDW 712
>gi|226510222|ref|NP_001147777.1| nucleolar RNA helicase 2 [Zea mays]
gi|195613718|gb|ACG28689.1| nucleolar RNA helicase 2 [Zea mays]
Length = 613
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 155/347 (44%), Positives = 228/347 (65%), Gaps = 13/347 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
++R S + EKL ++GI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 97 IARLGTSPRIVEKLAARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDK 156
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G GR P ++L PTRELA+QV ++F + L + C+YGG P + Q
Sbjct: 157 ILS----YNEKNGNGRNPLAIILAPTRELARQVEKEFRE---SAPLDTLCVYGGVPINQQ 209
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L G+D+V+GTPGR+ D + RG ++LS ++F VLDEAD+ML +GF EDVE+I+ ++
Sbjct: 210 MRALNYGVDIVVGTPGRVIDLLRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQL- 268
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
Q++LFSAT+PSW++ IS K+LK D IDLVG+ K + + + +
Sbjct: 269 -PQNRQSMLFSATMPSWIRKISNKYLK-DPVIIDLVGDSDQKLPEGISLYSIASDNFGKP 326
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLL---PGARALHGDIQQSQREVTLAGFRS 407
+I +I+ +++ G+ I+FT+TK A +LA ++ +ALHGDI Q+QRE TL+GFR
Sbjct: 327 SIIGPLIKEHANVGKCIVFTQTKREADRLAYVMGRSYQCQALHGDISQNQRERTLSGFRD 386
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G+F LVAT+VAARGLDI +V L++ E P E ++HRSGRT RAG
Sbjct: 387 GRFNILVATDVAARGLDIPNVDLVVHYEIPNTSELFVHRSGRTARAG 433
>gi|449435589|ref|XP_004135577.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Cucumis sativus]
Length = 748
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 221/610 (36%), Positives = 319/610 (52%), Gaps = 77/610 (12%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L + L+ +GI LFPIQ L+G DL+ RA+TG GKTLAF +PIL+
Sbjct: 113 AISKLNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPILK 172
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
LT ++ R P VLVL PTRELAKQV ++ + A L + C+YGG Y
Sbjct: 173 KLTED-DESRSLRRRSRLPRVLVLTPTRELAKQVEKE--IKESAPYLNTVCVYGGVSYIT 229
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q+ L +G+DVV+GTPGR+ D I +++L +++ VLDEAD+ML +GF EDVE+IL K+
Sbjct: 230 QQNALSRGVDVVVGTPGRLIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVILEKL 289
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
++ Q +LFSAT+P+WVK ++ K+L + TIDLVG++ K + ++ + +++++
Sbjct: 290 --PSQRQNMLFSATMPTWVKKLARKYL-DNPLTIDLVGDQDEKLAEGIKLHAILTTATSK 346
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
++ D++ Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR
Sbjct: 347 QTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFR 406
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA-------- 458
GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG E
Sbjct: 407 QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNS 466
Query: 459 --ETITQVSDSVIPAFKSA----AEELLNNSGLSAAELLAKALAKAV------------- 499
T+ + V F+ A EE+L +S L +++
Sbjct: 467 QRRTVRSLERDVGCKFEFANPPGMEEVLKSSAEQVVVTLRGVHPESIEYFTPTAQKLIDE 526
Query: 500 --------------GYTE-IKSRSLLSSLEDHVTVVLEAGKPIYTPSF-----AFGVLRR 539
G+T SRSL++ + VT+ L P Y+ F G L
Sbjct: 527 QGLGALAAALAQLSGFTHPPSSRSLINHEQGWVTLQL-TRDPSYSRGFLSARSVTGFLSD 585
Query: 540 FLPEEKVELVKGMALTADG--NGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQER 597
E+ K + L AD NGAVFD+P + N L++ K LPPLQ+
Sbjct: 586 VYSPAADEIGK-IHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKITK-LPPLQDD 643
Query: 598 ---EQSRGRF------------GGGGRGGFGGRGGNRFSGGRGGGFSDRRNDRFSGGFRG 642
+ GRF G G G +R S G FS R+ R + +G
Sbjct: 644 GPPSDNYGRFSGRERSSRNSSRDRRGLKTSRGWGSSRDSDDNGDIFSRNRSFR-TNNSKG 702
Query: 643 SKGRGGGNRW 652
R G+ W
Sbjct: 703 RNFRSSGDDW 712
>gi|124506009|ref|XP_001351602.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
gi|23504529|emb|CAD51409.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
gi|156072126|gb|ABU45414.1| DEAD-box helicase 5 [Plasmodium falciparum]
Length = 755
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 181/483 (37%), Positives = 256/483 (53%), Gaps = 94/483 (19%)
Query: 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT------------NG 174
KGI+ + IQ+ +F + +G D++GR+ TG GKTLAF LP++E L NG
Sbjct: 161 KGIKYMTKIQSQSFKPIYEGKDIIGRSETGSGKTLAFALPLVEKLYKMKTSNEKFEEENG 220
Query: 175 PTKASKKT---------------GYGRA---------PSVLVLLPTRELAKQVHEDFDVY 210
+ +K YG+ PS+LVL PTREL+KQV F
Sbjct: 221 SHEEDQKKNIYDDVDNDNNYDNFSYGKKYQNREHNKDPSILVLEPTRELSKQVENTFKEI 280
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+YGG Y QE KL+KGID++ GTPGRI DHIE+ N+ L ++K+ VLDEA
Sbjct: 281 SQFYNFNIMSIYGGESYTYQENKLRKGIDILTGTPGRIIDHIEKKNLSLQNIKYVVLDEA 340
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF D+E IL + + + Q LL+SAT PSW+K IS+K+LK + ID+V +
Sbjct: 341 DEMLNLGFTHDIERILSNI-NLKEAQVLLYSATTPSWIKDISSKYLK-NPFCIDVVDSSN 398
Query: 331 MKASTNVRHIVL--PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLAD-----LL 383
K + N++HI + P ++ ++ DII S+GG+ IIFT TK A L L
Sbjct: 399 -KTAKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFKSL 457
Query: 384 PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
A LHG+I QS RE T+ FR G F L+AT++A+RGLDI++V L+IQC PP Y
Sbjct: 458 SFA-VLHGNIAQSTREYTMQRFRQGMFQILIATDIASRGLDISNVDLVIQCFPPNYSAVY 516
Query: 444 IHRSGRTGRA-------------------------GVE-------------------AAE 459
IHR+GRTGRA G++ A++
Sbjct: 517 IHRAGRTGRANKKGTSLVLYSNEDKQDLIKIEKNCGIKFNMETLPNNEQVFHCASAIASK 576
Query: 460 TITQVSDSVIPAFKSAAEELLNNSG---LSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
+ V+ ++P F A+EL+N S + EL+++ LA IK RSL++ L +
Sbjct: 577 KVENVNKEILPFFHDTAKELINKSNSLKIDQIELISRCLAIIAKKEHIKKRSLINGLSET 636
Query: 517 VTV 519
VT+
Sbjct: 637 VTL 639
>gi|242086224|ref|XP_002443537.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
gi|241944230|gb|EES17375.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
Length = 618
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 157/347 (45%), Positives = 227/347 (65%), Gaps = 13/347 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+++ IS + E+L KGI LFPIQ + + G D+VGRA+TG GKTLAF +PIL++
Sbjct: 100 IAKLGISNKIVERLAKKGITKLFPIQRAVLEPAMQGRDMVGRAKTGTGKTLAFGIPILDA 159
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ + ++K G+ P +VL PTRELAKQV +F + L + C+YGG P Q
Sbjct: 160 II----RHNEKYKPGKFPLAIVLAPTRELAKQVEREF---LDSSPLETLCVYGGTPIMQQ 212
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+L G+DVVIGTPGR+ D ++RG + L+ ++F VLDEAD+ML +GF +DVE IL +V
Sbjct: 213 IRQLNYGVDVVIGTPGRVIDLLKRGALSLAEIRFVVLDEADQMLSVGFDQDVETILERVP 272
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
QTL+FSAT+P+W++ ++ K+L S T+DLVG + K + + + + + +
Sbjct: 273 PQR--QTLMFSATMPTWIRKLTQKYLNS-PVTVDLVGEDDQKLAEGISLLSVSSENRQKP 329
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRS 407
V+ ++I+ ++ GG+ I+FT+TK A +L+ + ALHGDI QSQRE TL GFR
Sbjct: 330 AVLGELIKEHAKGGKCIVFTQTKRDADRLSHSMSRSFQCEALHGDISQSQRERTLGGFRD 389
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G+F L+AT+VAARGLDI +V L+I E P E ++HRSGRTGRAG
Sbjct: 390 GRFNILIATDVAARGLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAG 436
>gi|449703528|gb|EMD43965.1| ATP-dependent RNA helicase, putative [Entamoeba histolytica KU27]
Length = 695
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 165/378 (43%), Positives = 230/378 (60%), Gaps = 20/378 (5%)
Query: 106 EHPNAVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
++P + R +S +E LK +GI SLFPIQ T+ + D+VG+A+TG GKT++F
Sbjct: 62 DNPGSFDRMDPPVSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISF 121
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
LP++E L ++ G+ P V+ L PTRELA Q+ E+F C+YG
Sbjct: 122 TLPLMERL------RAENERKGKNPRVICLSPTRELAIQIAEEF-TQCSCGKFKVICVYG 174
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G Q KL+ G+DV++GTPGR++D +R + L S++ VLDEADEML +GF E+V
Sbjct: 175 GVDIQGQINKLQSGVDVIVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVT 234
Query: 284 LIL----GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVR 338
I+ G V + VQTLLFSAT+P+WVK IS K+L+ D + ID+ VGN ++ N +
Sbjct: 235 QIMDFVHGSVPKESTVQTLLFSATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPK--NAK 292
Query: 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA---DLLPGARALHGDIQQ 395
H+ +++Q I D+IR Y GRTI+F +TK + A + + + LHGDIQQ
Sbjct: 293 HLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCAIAINPIFECQQLHGDIQQ 352
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455
QRE TL GFR KF LVAT+VAARGLDI+ V LII P+D+ Y+HR+GRT RAG
Sbjct: 353 KQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGK 412
Query: 456 EAAETITQVSDSVIPAFK 473
E TIT + +P +
Sbjct: 413 EGT-TITLFTRKELPQLQ 429
>gi|183234688|ref|XP_649929.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|169800959|gb|EAL44543.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 723
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 165/378 (43%), Positives = 230/378 (60%), Gaps = 20/378 (5%)
Query: 106 EHPNAVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
++P + R +S +E LK +GI SLFPIQ T+ + D+VG+A+TG GKT++F
Sbjct: 62 DNPGSFDRMDPPVSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISF 121
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
LP++E L ++ G+ P V+ L PTRELA Q+ E+F C+YG
Sbjct: 122 TLPLMERL------RAENERKGKNPRVICLSPTRELAIQIAEEF-TQCSCGKFKVICVYG 174
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G Q KL+ G+DV++GTPGR++D +R + L S++ VLDEADEML +GF E+V
Sbjct: 175 GVDIQGQINKLQSGVDVIVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVT 234
Query: 284 LIL----GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVR 338
I+ G V + VQTLLFSAT+P+WVK IS K+L+ D + ID+ VGN ++ N +
Sbjct: 235 QIMDFVHGSVPKESTVQTLLFSATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPK--NAK 292
Query: 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA---DLLPGARALHGDIQQ 395
H+ +++Q I D+IR Y GRTI+F +TK + A + + + LHGDIQQ
Sbjct: 293 HLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCAIAINPIFECQQLHGDIQQ 352
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455
QRE TL GFR KF LVAT+VAARGLDI+ V LII P+D+ Y+HR+GRT RAG
Sbjct: 353 KQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGK 412
Query: 456 EAAETITQVSDSVIPAFK 473
E TIT + +P +
Sbjct: 413 EGT-TITLFTRKELPQLQ 429
>gi|407042825|gb|EKE41557.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 667
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 165/378 (43%), Positives = 230/378 (60%), Gaps = 20/378 (5%)
Query: 106 EHPNAVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
++P + R +S +E LK +GI SLFPIQ T+ + D+VG+A+TG GKT++F
Sbjct: 62 DNPGSFDRMDPPVSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISF 121
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
LP++E L ++ G+ P V+ L PTRELA Q+ E+F C+YG
Sbjct: 122 ALPLMERL------RAENERKGKNPRVICLSPTRELAIQIAEEF-TQCSCGKFKVICVYG 174
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G Q KL+ G+DV++GTPGR++D +R + L S++ VLDEADEML +GF E+V
Sbjct: 175 GVDIQGQINKLQSGVDVIVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVT 234
Query: 284 LIL----GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVR 338
I+ G V + VQTLLFSAT+P+WVK IS K+L+ D + ID+ VGN ++ N +
Sbjct: 235 QIMDFVHGSVPKESTVQTLLFSATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPK--NAK 292
Query: 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA---DLLPGARALHGDIQQ 395
H+ +++Q I D+IR Y GRTI+F +TK + A + + + LHGDIQQ
Sbjct: 293 HLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCAIAINPIFECQQLHGDIQQ 352
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455
QRE TL GFR KF LVAT+VAARGLDI+ V LII P+D+ Y+HR+GRT RAG
Sbjct: 353 KQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGK 412
Query: 456 EAAETITQVSDSVIPAFK 473
E TIT + +P +
Sbjct: 413 EGT-TITLFTRKELPQLQ 429
>gi|82539303|ref|XP_724049.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23478563|gb|EAA15614.1| Unknown protein [Plasmodium yoelii yoelii]
Length = 635
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 196/551 (35%), Positives = 285/551 (51%), Gaps = 90/551 (16%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
V+ E ++++E+ E +++ + I+ + E L++KGI+ + IQ+ +F + +G+D++
Sbjct: 92 VDEENILQDEEKKNKELFSSIPQ--INQKIVEFLETKGIKYMTKIQSKSFMPIYEGNDII 149
Query: 151 GRARTGQGKTLAFVLPILE---------------------SLTNGPTKASKKTGYGRAPS 189
GR+ TG GKT+AF LP++E S+ + + +K + P
Sbjct: 150 GRSETGSGKTIAFALPLVEKLYKNIESQKKIIKNKSNEINSIQHLSEEGNKNDNMDKDPY 209
Query: 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK 249
+LVL PTREL+KQV F +YGG Y QE KL+KGI ++ GTPGRI
Sbjct: 210 ILVLEPTRELSKQVETTFKEISQFYNFNIMSIYGGESYTYQENKLRKGIQILTGTPGRII 269
Query: 250 DHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--KVEDANKVQTLLFSATLPSW 307
DHIE+ N+ L ++K+ VLDEADEML +GF D+E IL ++DA Q LL+SAT PSW
Sbjct: 270 DHIEKKNLSLKNIKYVVLDEADEMLNLGFTHDIERILSYINIKDA---QVLLYSATTPSW 326
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL--PCSSSARSQVIPDIIRCYSSGGR 365
+K IS+K+LK + ID++ N K S ++HI + P ++ ++ DII S+GG+
Sbjct: 327 IKDISSKYLK-NPIYIDVI-NTINKTSKTIQHIAIKTPYDIKEKAMLLEDIILVKSNGGQ 384
Query: 366 TIIFTETKESASQLA-----DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
IIFT TK A LA + L LHG+I QS RE T+ FR+G F L+AT++AA
Sbjct: 385 VIIFTRTKLEADILASEGSFNYL-NFSVLHGNIAQSTREHTMQRFRNGMFQVLIATDIAA 443
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA---GVEAA------------------- 458
RGLDI++V LIIQC PP YIHRSGRTGRA G+
Sbjct: 444 RGLDISNVDLIIQCYPPTYPAIYIHRSGRTGRANKKGISIVLFSNEDKNDVIKIEKNCGI 503
Query: 459 ----------------------ETITQVSDSVIPAFKSAAEELLNNSGL---SAAELLAK 493
+ I V+ V+P F +A EL+ S L L+++
Sbjct: 504 KFLTESLPSNEQVFHSVSKIILKKIENVNSEVLPFFYKSANELIEKSNLLNIDQINLISR 563
Query: 494 ALAKAVGYTEIKSRSLLSSLEDHVTVVL----EAGKPIY-TPSFAFGVLRRFLPEEKVEL 548
LA IK RSL+S L D +T+ K I+ F L + L E ++
Sbjct: 564 CLAIISKKEYIKKRSLISGLSDTITLTFLNKKRKWKNIHDINHFLIFDLNQKLAENLIQN 623
Query: 549 VKGMALTADGN 559
MA + N
Sbjct: 624 FNNMAKMENNN 634
>gi|156094360|ref|XP_001613217.1| ATP-dependent helicase [Plasmodium vivax Sal-1]
gi|148802091|gb|EDL43490.1| ATP-dependent helicase, putative [Plasmodium vivax]
Length = 720
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 187/495 (37%), Positives = 266/495 (53%), Gaps = 82/495 (16%)
Query: 103 GESEHPNAVSRF----RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
GE+ P ++F I+ + + L SKGI + IQA +F + +G D++GR+ TG G
Sbjct: 116 GENCSPRVSNQFADVPEINPNIAKFLSSKGINQMTKIQAQSFRPIYEGRDIIGRSETGSG 175
Query: 159 KTLAFVLPILESLTN----------GPTKASKKTG--YG--------RAPSVLVLLPTRE 198
KTLAF LP++E L P+ ++ +G + PS+LVL PTRE
Sbjct: 176 KTLAFALPLVEKLYKVKMGRSGEGVSPSTPHLESANHFGGTNQPDDSKNPSILVLEPTRE 235
Query: 199 LAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID 258
L+KQV F +YGG Y QE KL+KGI+++ GTPGRI DH+ER N+
Sbjct: 236 LSKQVENTFKEISQFYNFNIMSIYGGESYVYQEAKLRKGIEILTGTPGRIIDHLERKNLS 295
Query: 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKS 318
L ++K+ VLDEADEML +GF D+E IL + + + Q LL+SAT PSW+K IS+K++K
Sbjct: 296 LQNIKYLVLDEADEMLNLGFTHDLERILSYI-NLKEAQILLYSATTPSWIKDISSKYMK- 353
Query: 319 DKKTIDLVGNEKMKASTNVRHIVL--PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESA 376
+ ID+V + K S N++HI + P ++ ++ DII S+GG+ IIFT TK A
Sbjct: 354 NPFFIDVVDSSN-KTSKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEA 412
Query: 377 SQLAD-----LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLI 431
L L A LHG+I Q+ RE T+ FR G F L+AT++AARGLDI++V L+
Sbjct: 413 DILCSEGSFKSLSFA-VLHGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLV 471
Query: 432 IQCEPPRDVEAYIHRSGRTGRA-------------------------GVE---------- 456
IQC PP E YIHR+GRTGRA G++
Sbjct: 472 IQCFPPNYAEIYIHRAGRTGRANKKGISVVLFSTEDKQDLVKIEKNCGIKFSIEQLPNNE 531
Query: 457 ---------AAETITQVSDSVIPAFKSAAEELLNNSG---LSAAELLAKALAKAVGYTEI 504
A++ I V+ SV+P F A EL+ + EL+A+ LA I
Sbjct: 532 DVFTSASTMASKKIQNVNPSVLPFFHKTASELIEKCTQLQMDQTELVARCLAIISKKEHI 591
Query: 505 KSRSLLSSLEDHVTV 519
K RSL++ L + +T+
Sbjct: 592 KKRSLINGLSETLTL 606
>gi|224139612|ref|XP_002323192.1| predicted protein [Populus trichocarpa]
gi|222867822|gb|EEF04953.1| predicted protein [Populus trichocarpa]
Length = 551
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 166/377 (44%), Positives = 232/377 (61%), Gaps = 14/377 (3%)
Query: 93 PEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
P+ G +E + +E +SR IS + L KGI LFPIQ + + G D+ GR
Sbjct: 28 PDYGYDEGK--GNEEGLEISRLGISQEIVGALAKKGITKLFPIQRAVLEPAMQGKDMFGR 85
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212
ARTG GKTLAF +PIL+ + + + + G GR P +V+ PTRELA+QV ++F
Sbjct: 86 ARTGTGKTLAFGIPILDKIL----QFNAQHGRGRYPLGIVMAPTRELARQVEKEFREAAP 141
Query: 213 AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE 272
++ +T CLYGG P Q L+ G+DVV+GTPGRI D ++RG++ LS ++ VLDEAD+
Sbjct: 142 SLDIT--CLYGGTPISQQMRDLEYGVDVVVGTPGRIIDLMKRGSLVLSEVQHVVLDEADQ 199
Query: 273 MLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMK 332
ML +GFV+D+E IL V K ++ FSAT+PSW++ + K+LK D TIDLVG+ K
Sbjct: 200 MLGVGFVDDIETILSSV--PQKRHSMCFSATMPSWIRELVRKYLK-DPLTIDLVGDSDKK 256
Query: 333 ASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG---ARAL 389
+ + + A++ ++ +I ++ GG+ I+FTETK A +LA + AL
Sbjct: 257 LAEGITLYSIASDLYAKASILGPLITEHAKGGKCIVFTETKRDADRLAYAMAKTYKCEAL 316
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGDI QS RE TL+GFR G F LVAT+VAARGLD+ +V LII PR E ++HRSGR
Sbjct: 317 HGDISQSVRERTLSGFREGHFNILVATDVAARGLDVPNVDLIIHYALPRCSETFVHRSGR 376
Query: 450 TGRAGVEAAETITQVSD 466
TGRAG + + D
Sbjct: 377 TGRAGKKGTAILIYTQD 393
>gi|90076020|dbj|BAE87690.1| unnamed protein product [Macaca fascicularis]
Length = 353
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 221/355 (62%), Gaps = 27/355 (7%)
Query: 74 PVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLF 133
PV L SE+ ++ E VE++E A S F IS + LK +G+ LF
Sbjct: 12 PVKLASEESN-----GDIDQEISVEQKE-------GAFSNFPISEETIKLLKGRGVTFLF 59
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA TF V G DL+ +ARTG GKT +F +P++E L +G + K+ GR P VLVL
Sbjct: 60 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRPPQVLVL 115
Query: 194 LPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV +DF D+ L+ C YGG PY Q +++ GID+++GTPGRIKDHI
Sbjct: 116 APTRELANQVSKDFSDI---TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHI 172
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVK 309
+ G +DL+ LK VLDE D+ML MGF + VE IL K + + QTLLFSAT P WV
Sbjct: 173 QSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVF 232
Query: 310 HISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTII 368
+++ K++KS + +DL+G + K + V H+ + C + R+ VI D+IR YS GRTII
Sbjct: 233 NVAKKYMKSTCEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTII 292
Query: 369 FTETKESASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
F ETK+ A +L+ + A++LHGDI Q QRE+TL GFR+G F LVATNVA
Sbjct: 293 FCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAC 347
>gi|221057271|ref|XP_002259773.1| ATP-dependent helicase [Plasmodium knowlesi strain H]
gi|193809845|emb|CAQ40549.1| ATP-dependent helicase, putative [Plasmodium knowlesi strain H]
Length = 722
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 182/471 (38%), Positives = 255/471 (54%), Gaps = 79/471 (16%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN--------GP 175
L SKGI + IQA +F + +G D++GR+ TG GKTLAF LP++E L G
Sbjct: 142 LASKGINQMTKIQAQSFRPIYEGRDIIGRSETGSGKTLAFALPLVEKLYKVKMGRSGEGV 201
Query: 176 TKAS-------------KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
T ++ ++ + PS+LVL PTREL+KQV F +Y
Sbjct: 202 TSSTPHMEKSANAFDGRNQSDDNKNPSILVLEPTRELSKQVENTFKEISQFYNFNIMSIY 261
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG Y QE KL+KGI+++ GTPGRI DH+E+ N+ L ++K+ VLDEADEML +GF D+
Sbjct: 262 GGESYVYQEAKLRKGIEILTGTPGRIIDHLEKKNLSLQNIKYLVLDEADEMLNLGFTHDL 321
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E IL + + + Q LL+SAT PSWVK IS++++K + ID+V + K S N++HI +
Sbjct: 322 ERILSYI-NLKEAQILLYSATTPSWVKDISSRYMK-NPFFIDVVDSSN-KTSKNIKHIAI 378
Query: 343 --PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLAD-----LLPGARALHGDIQQ 395
P ++ ++ DII S+GG+ IIFT TK A L L A LHG+I Q
Sbjct: 379 KTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFKSLSFA-VLHGNIAQ 437
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA-- 453
+ RE T+ FR G F L+AT++AARGLDI++V L+IQC PP E YIHR+GRTGRA
Sbjct: 438 TTREHTMQRFRQGMFQILIATDIAARGLDISNVDLVIQCFPPNYAEIYIHRAGRTGRANK 497
Query: 454 -GVE-----------------------------------------AAETITQVSDSVIPA 471
GV A++ I V+ SV+P
Sbjct: 498 KGVSVVLFSSEDKQDLIKIEKNCGIKFSIEQLPNNEDVFTSASTMASKKIENVNPSVLPF 557
Query: 472 FKSAAEELLNNSG---LSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTV 519
F A EL+ + EL+A+ LA +IK RSL++ L + +T+
Sbjct: 558 FHKTASELIEKCTQLQMDQTELVARCLALISKKEQIKKRSLINGLSETLTL 608
>gi|357442015|ref|XP_003591285.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355480333|gb|AES61536.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 615
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 230/355 (64%), Gaps = 11/355 (3%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+S+ L + L+ +GI SLFPIQ L+G D++ RA+TG GKTLAF +PI++
Sbjct: 89 ISKLGFPSQLVDSLQRRGITSLFPIQRAVLLPALEGRDIIARAKTGTGKTLAFGIPIIKG 148
Query: 171 LT-NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
LT N + +++G R P VLVL PTRELAKQV ++ + A L + C+YGG Y
Sbjct: 149 LTENEQSNMMRRSG--RLPKVLVLAPTRELAKQVEKE--IKESAPYLNTVCVYGGVSYDI 204
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q L +G+DVV+GTPGR+ D I G + L+ +++ VLDEAD+ML +GF E VE IL +
Sbjct: 205 QRNALSRGVDVVVGTPGRLIDLINGGTLKLAEIQYLVLDEADQMLAVGFEESVEEILESI 264
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
++ Q +LFSAT+P WVK +S K L ++ TIDLVG+ + K + ++ + +S+++
Sbjct: 265 --PSQRQIMLFSATMPGWVKKLSRKHL-NNPLTIDLVGDREEKLAEGIKLYAVSATSTSK 321
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFR 406
+++ +I Y++GG+TI+FT TK A +++ L ++ LHGDI Q QRE TL GFR
Sbjct: 322 RRILYGLISAYANGGKTIVFTRTKRDADEISLSLTNSIASKPLHGDISQYQREKTLNGFR 381
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETI 461
G+F LVAT+VA+RGLDI +V LII E P E ++HRSGRTGRAG E +
Sbjct: 382 QGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGTAVV 436
>gi|325188903|emb|CCA23433.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 684
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 152/346 (43%), Positives = 214/346 (61%), Gaps = 14/346 (4%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
++ F +S L LK GI LFP+Q +F ++ G DLVGR++TG GKTLAF LPI+E
Sbjct: 83 ITEFGLSDTLFSNLKKAGITDLFPVQVQSFSTMMKGVDLVGRSKTGSGKTLAFGLPIIEK 142
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
L + ++G R P L+LLPTRELA QV + L + + GG PYH+Q
Sbjct: 143 LLS-------RSGSRRNPGALILLPTRELATQVSSELSRLSPQ--LKTVTIVGGVPYHSQ 193
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
E +++ G+D+V+GTPGRI D E+ + ++F VLDEAD ML+ GF E VE IL V
Sbjct: 194 ESRIRAGVDIVVGTPGRIMDLFEKKTLSFEDVQFTVLDEADMMLKFGFQEAVETILSWVP 253
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+ Q +++SAT P WV ++ K+LK D TIDLVG+E+ T V H + S+ R
Sbjct: 254 ETR--QCVMWSATFPKWVTSLTKKYLK-DAVTIDLVGSEEAHVPTTVSHKAINVPSNYRV 310
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA--RALHGDIQQSQREVTLAGFRSG 408
+ I+ Y+S G++++FTETK A+++A+ L G +ALHGD+ Q R T+ FR G
Sbjct: 311 VALQRILEKYASQGQSLVFTETKHEANEIANGLEGCNVQALHGDLSQGVRASTMQNFRKG 370
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
TL T++AARGLDI +V L++ P D E ++HR+GRTGRAG
Sbjct: 371 LVKTLACTDIAARGLDIANVDLVVHYRLPNDRENFVHRAGRTGRAG 416
>gi|302846090|ref|XP_002954582.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
nagariensis]
gi|300260001|gb|EFJ44223.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
nagariensis]
Length = 424
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 159/342 (46%), Positives = 221/342 (64%), Gaps = 16/342 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT--NGPTKAS 179
+ L ++GI SLFP+QA F+ +++G D+V RA+TG GKTLAF LP++E+L NG ++
Sbjct: 2 DALAARGIYSLFPVQAQVFEPIMNGRDVVCRAKTGSGKTLAFALPVVENLLEENGKSRPR 61
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
K GRAP LVL PTRELA QV +F+ + + S YGG Q L+ G+D
Sbjct: 62 K----GRAPRCLVLAPTRELANQVSREFESVCPNLKVDS--FYGGVSISPQIRSLENGVD 115
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGRI D +ERG + L ++++ VLDEAD+ML MGF +D+E ILG + + + QTLL
Sbjct: 116 VVVGTPGRIIDLLERGCLKLDNIRYAVLDEADQMLDMGFEQDMERILGAIPEGKERQTLL 175
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKM-KASTNVRHIVLPCSSSARSQVIPDIIR 358
FSATLP WVK ++ ++ +++ TIDLVG E K + +R +V + + + ++
Sbjct: 176 FSATLPKWVKSVAKRY-QNNPLTIDLVGEENTGKLADTIRLLVQQVDGAQKMSALQGLLA 234
Query: 359 CY---SSGGRTIIFTETKESASQL---ADLLPGARALHGDIQQSQREVTLAGFRSGKFMT 412
Y + GG+ IIF TK A ++ + ALHGDI Q+QRE LA FR GK+
Sbjct: 235 MYGNTAGGGKAIIFVNTKAKADEVNMAVNEFASCDALHGDISQAQREKALALFRDGKYNC 294
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLDI V L+ + P+D EA++HRSGRTGRAG
Sbjct: 295 LVATDVAARGLDIPSVDLVAHFDLPQDNEAFLHRSGRTGRAG 336
>gi|147828502|emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera]
Length = 786
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 218/637 (34%), Positives = 320/637 (50%), Gaps = 125/637 (19%)
Query: 90 KVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDL 149
++E A +E E A+++ + L E L+ +GI LFPIQ L+G DL
Sbjct: 104 EIEASAAAQEDEL-------ALAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEGRDL 156
Query: 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209
+ RA+TG GKTLAF +PI++ L+ K + + GR P VLVL PTRELAKQV + ++
Sbjct: 157 IARAKTGTGKTLAFGIPIIKRLSEDDEKRTSQRRSGRLPRVLVLAPTRELAKQVEK--EI 214
Query: 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269
A L++ C+YGG Y Q+ L +G+DVV+GTPGRI D I+ ++ L ++ VLDE
Sbjct: 215 KESAPYLSTVCVYGGVSYITQQNALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDE 274
Query: 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL------------- 316
AD+ML +GF EDVE+IL K+ ++ Q++LFSAT+P+WVK ++ K+L
Sbjct: 275 ADQMLAVGFEEDVEVILEKL--PSERQSMLFSATMPAWVKKLARKYLDNPLTIDLGNFCP 332
Query: 317 ---------KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII---------- 357
K+ +T+D VG+ K + ++ +P +++++ ++ D+I
Sbjct: 333 HWGLNLEPPKNPPQTLDHVGDHDEKLAEGIKLYAIPTTATSKRTILSDLITKNIVKDRGG 392
Query: 358 -----RCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGK 409
+ Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR GK
Sbjct: 393 FQYGHKVYAKGGKTIVFTQTKRDADEVSMALTNSIASEALHGDISQHQRERTLNGFRQGK 452
Query: 410 FMTLVATNVAARGLDINDVQL---------IIQCEPPRDVEAYIHRSGRTGRAGVEAAET 460
F LVAT+VAARGLDI +V L II E P D E ++HRSGRTGRAG E
Sbjct: 453 FTVLVATDVAARGLDIPNVDLKYVDLLFLQIIHYELPNDPETFVHRSGRTGRAGKEGTAI 512
Query: 461 ITQVSD----------------------SVIPAFKSAAEEL---LNNSGLSAAELLAKAL 495
+ S ++ +S+AE++ LN + E
Sbjct: 513 LMFTSSQRRTVKSLERDVGCKFEFISPPAIEEVLESSAEQVVATLNGVHPESVEFFTPTA 572
Query: 496 AKAV----------------GYTEIKS-RSLLSSLEDHVTVVL--EAGKPIYTPSF---- 532
K + G+++ S RSL+S + VT+ L ++G Y+ F
Sbjct: 573 QKLIEEKGTGALAAALAHLSGFSQPPSFRSLISHEQGWVTLQLTRDSG---YSRGFLSAR 629
Query: 533 -AFGVLRRFLPEEKVELVKGMALTADG--NGAVFDVPVADLDLFRSGADNAANVSLEVLK 589
G L P EL K + L AD GAVFD+P + N ++ +
Sbjct: 630 SVTGFLSDVYPTAADELGK-IYLVADERVQGAVFDLPEEIAKELLNKQMPPGN-TISKIT 687
Query: 590 QLPPLQEREQSRGRFGGGGRGGFGGRGGNRFSGGRGG 626
+LP LQ+ G G + GR NR RGG
Sbjct: 688 KLPALQD---------DGPAGDYYGRFSNRDRSSRGG 715
>gi|68063293|ref|XP_673656.1| ATP-dependent helicase [Plasmodium berghei strain ANKA]
gi|56491666|emb|CAH95329.1| ATP-dependent helicase, putative [Plasmodium berghei]
Length = 525
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 180/484 (37%), Positives = 255/484 (52%), Gaps = 81/484 (16%)
Query: 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG 174
+I+ + + L++KGI+ + IQ+ +F + +G+D++GR+ TG GKTLAF LP++E L
Sbjct: 6 QINQKIVDFLETKGIKYMTKIQSKSFMPIYEGNDIIGRSETGSGKTLAFALPLVEKLYKN 65
Query: 175 P-----------------------TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211
K + P +LVL PTREL+KQV F
Sbjct: 66 MESKKKIIKNKSNEINSIQHLSEGHKNENTDSMDKYPYILVLEPTRELSKQVETTFKEIS 125
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
+YGG Y QE KL+KGI ++ GTPGRI DHIE+ N+ L ++K+ VLDEAD
Sbjct: 126 QFYNFNIMSIYGGESYTYQENKLRKGIQILTGTPGRIIDHIEKKNLSLKNIKYVVLDEAD 185
Query: 272 EMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKM 331
EML +GF D+E IL + + Q LL+SAT PSW+K IS+K+LK + ID++ N
Sbjct: 186 EMLNLGFTHDIERILSYI-NIKDAQVLLYSATTPSWIKDISSKYLK-NPIYIDVI-NTIN 242
Query: 332 KASTNVRHIVL--PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-----DLLP 384
K S ++HI + P ++ ++ DII S+GG+ IIFT TK A L + L
Sbjct: 243 KTSKTIQHIAIKTPYDIKEKAMLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFNYLT 302
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
+ LHG+I QS RE T+ FRSG F L+AT++AARGLDI++V L+IQC PP YI
Sbjct: 303 FS-VLHGNIAQSTREHTMQRFRSGMFQVLIATDIAARGLDISNVDLVIQCYPPTYPAIYI 361
Query: 445 HRSGRTGRA-------------------------GVE-------------------AAET 460
HRSGRTGRA G++ +
Sbjct: 362 HRSGRTGRANKKGMSIVLFSNEDKNDVIKIEKNCGIKFTTESLPNNEQVFHSVSKITLKK 421
Query: 461 ITQVSDSVIPAFKSAAEELLNNSGL---SAAELLAKALAKAVGYTEIKSRSLLSSLEDHV 517
I V+ V+P F +A EL+ S L + +L+++ LA IK RSL+S L D +
Sbjct: 422 IENVNTEVLPFFHKSANELIEKSNLLNINQIDLISRCLAIISKKEYIKKRSLISGLSDTI 481
Query: 518 TVVL 521
T+
Sbjct: 482 TLTF 485
>gi|412988910|emb|CCO15501.1| predicted protein [Bathycoccus prasinos]
Length = 935
Score = 288 bits (737), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 161/363 (44%), Positives = 223/363 (61%), Gaps = 23/363 (6%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P +++ F + LK KGIE+LFPIQ + G D+V RA+TG GKTLAF LPI
Sbjct: 219 PTSINNFNLHPITIAALKKKGIETLFPIQVAALEPAQSGRDVVARAKTGTGKTLAFSLPI 278
Query: 168 LESLTNGPTKASKK---TGYG--------RAPSVLVLLPTRELAKQVHEDFDVYGGAVGL 216
+E + + + G G + P +VL PTRELA+QV + +Y A
Sbjct: 279 VEKFLREDEEENNRGDEDGEGTRRRGSRDKRPRCIVLAPTRELAQQVERE--IYSLAPSF 336
Query: 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276
+ +YGGAP QE KL++G+D V+GTPGR+ D + RG +DLS ++ VLDEAD+ML +
Sbjct: 337 ETLTVYGGAPIGPQESKLRRGVDFVVGTPGRVMDLLNRGTLDLSRVQHVVLDEADQMLAV 396
Query: 277 GFVEDVELILGKVEDANKV-QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
GF EDVE IL ED K QT LFSAT+P WVK + KFL D+ IDLVG + K +
Sbjct: 397 GFEEDVETIL---EDVPKNRQTFLFSATMPHWVKKLQQKFL-VDQVNIDLVGEDTGKINK 452
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHG 391
++ + + ++ V+ D++ ++ G +TI+FT+TK A ++ L G R LHG
Sbjct: 453 DIDLMSCSVAFPSKCAVLMDLVTVHAKGNKTIVFTQTKRDADEVTASL-GKRVSTEVLHG 511
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q+QRE TL FR KF LVAT+VAARGLD+++V L++ E P + E+++HR GRTG
Sbjct: 512 DIAQAQRERTLQRFRQDKFSVLVATDVAARGLDVDNVDLVVHYELPNETESFVHRCGRTG 571
Query: 452 RAG 454
RAG
Sbjct: 572 RAG 574
>gi|440297912|gb|ELP90553.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba invadens IP1]
Length = 759
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 210/679 (30%), Positives = 326/679 (48%), Gaps = 111/679 (16%)
Query: 37 KSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAG 96
K S K K KK S+ E +++++ + + P N S PE+
Sbjct: 48 KKSANKDFIKPTPKKKVASSDSESDDKKTPSKTSSKSPENFASP----------AIPESP 97
Query: 97 VEEQERG---ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
+ +Q G +E P IS+ + LK +GI SLFPIQ T+ + +G D+VG+A
Sbjct: 98 MPDQNPGSFDNTEPP-------ISLEAQAMLKERGITSLFPIQISTYAPIYEGLDVVGKA 150
Query: 154 RTGQGKTLAFVLPILESL-TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212
+TG GKT++F LP+LE + P + + P V++L PTRELA Q+ E+ V
Sbjct: 151 QTGSGKTISFTLPLLERMRATNPARE-------KLPRVIILSPTRELATQILEE--VEKC 201
Query: 213 AVGLTSC-CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
++G+ S C+YGG Q KL+ G+D+V+GTPGR+ DHI RG++ LS+++ +LDEAD
Sbjct: 202 SLGVYSLLCIYGGVEMFPQTSKLRSGVDIVVGTPGRVLDHINRGSLVLSNIETIILDEAD 261
Query: 272 EMLRMGFVEDVELIL----GKVEDANK-----------------VQTLLFSATLPSWVKH 310
+ML +GF ED+ IL G V D +K +QTLLFSAT+P WV
Sbjct: 262 QMLNIGFKEDLNKILEAIHGNVTDDSKSGKDGYKKTNLNANNKVIQTLLFSATVPDWVTE 321
Query: 311 ISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFT 370
+S K+L+ D ID V + + +N +H C + + I +I+ Y+ GRTI+F
Sbjct: 322 VSEKYLREDHVKID-VTSTTTQMPSNAKHYACMCFPYNKVETIVPLIKTYNPNGRTIVFC 380
Query: 371 ETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427
+TK+ + + A+ +HGDI Q+ R T+ GF+ +F L+AT+V ARG+DI+
Sbjct: 381 DTKKECGDICIKIGEHLSAQMIHGDINQTLRTQTIKGFKEDRFSVLIATDVVARGIDISG 440
Query: 428 VQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAF--------------- 472
V LII P+D+ Y+HR+GRT RAG E T+T + + I A
Sbjct: 441 VDLIIMTRVPKDIPQYVHRAGRTARAGKEGI-TVTLYTMAEISALGMIEKSVNFKFERIG 499
Query: 473 -------------------KSAAEELLNNSGLSAAELLAK------ALAKAVGYTEIKSR 507
K + L N +A ++L + A+AK + SR
Sbjct: 500 VPQPETLARFAVLGLSGDMKDVKKSLYNVHMDTAQQVLDEEKDPKIAVAKLITLLYKPSR 559
Query: 508 ----SLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVF 563
SLL + +TV K I + ++ ++ + ++ +K + ++ D N
Sbjct: 560 GTDYSLLCGKSELLTVFFNTTKEIKSTNYVKTLVSTVVGVGCMDKIKEVIISEDHNIYFD 619
Query: 564 DVPVADLDLFRSGADNAANVSLEVLKQLPP----LQEREQSRGRFGGGGRGG-----FGG 614
P DN +++ L Q P + R SR +G GR FGG
Sbjct: 620 AFPEIARKFVDMATDNDRSITECYLAQKLPEKLEIHNRFGSRDSYGSYGRQNDRQTRFGG 679
Query: 615 RGGNRFSGGRGGGFSDRRN 633
G + + G + + DR N
Sbjct: 680 YGSSNY-GDKNNSYGDRNN 697
>gi|401411071|ref|XP_003884983.1| DEAD box RNA helicase, related [Neospora caninum Liverpool]
gi|325119402|emb|CBZ54955.1| DEAD box RNA helicase, related [Neospora caninum Liverpool]
Length = 853
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 159/382 (41%), Positives = 220/382 (57%), Gaps = 29/382 (7%)
Query: 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170
+S + +S + L+ + I L P+Q + V G D +GRARTG GKT+AF LP++E
Sbjct: 131 LSNYNLSKQSLKSLQRRNITHLLPVQQAAYKDVFAGHDFIGRARTGTGKTIAFALPLVER 190
Query: 171 LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ A K P ++ LLPTRELA+QVHE+FD G L S CLYGGA + Q
Sbjct: 191 VCASVGDAGLK--RREKPRIVALLPTRELAQQVHEEFDTLLGGR-LASVCLYGGAAEYPQ 247
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL---- 286
KL+ G+ VV+ PGR KD ++RG I L+ VLDEAD ML MGF EDVE IL
Sbjct: 248 LQKLRSGVSVVVACPGRFKDFMDRGEIGGKQLEAVVLDEADRMLEMGFREDVEEILQWTK 307
Query: 287 ----GKVEDANKVQTLLFSATLPSWVKHISTKFLK-----------SDKKTIDLVGNEKM 331
+D +Q LLF+ATLP W ++ +F++ +K + +
Sbjct: 308 KEREADSDDVPPLQMLLFTATLPQWALTLADRFMRKDRVVVDVVKLQEKASAASSSSPAD 367
Query: 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR---TIIFTETKESASQLA---DLLPG 385
+ H+VL C+ +R+ V+ D++ Y+ GR IIF ETK+ + +A ++
Sbjct: 368 AKKGTIEHLVLFCAWQSRAHVLGDLLSLYTPPGRASSVIIFAETKQEVNSIAVASNIRHL 427
Query: 386 ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445
LHGDI Q+QRE TL F+ GKF LVAT+VAARGL ++D+ L+IQ PPRDV+ YIH
Sbjct: 428 CAPLHGDIPQNQREATLNAFKKGKFACLVATDVAARGLHVDDLSLVIQISPPRDVDTYIH 487
Query: 446 RSGRTGRAG-VEAAETITQVSD 466
R+GRTGRAG T+ ++SD
Sbjct: 488 RAGRTGRAGRTGVCITLAKLSD 509
>gi|334187954|ref|NP_001190402.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|332006183|gb|AED93566.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 655
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 199/524 (37%), Positives = 285/524 (54%), Gaps = 80/524 (15%)
Query: 144 LDGSDLVGRARTGQGKTLAFVLPILESLTN--GPTKASKKTGYGRAPSVLVLLPTRELAK 201
L G D++ RA+TG GKTLAF +PI++ LT G A +++G R P LVL PTRELAK
Sbjct: 44 LQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSG--RLPKFLVLAPTRELAK 101
Query: 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSS 261
QV ++ + A L++ C+YGG Y Q+ L +G+DVV+GTPGRI D IE ++ L
Sbjct: 102 QVEKE--IKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGE 159
Query: 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321
+++ VLDEAD+ML +GF E VE IL + K Q++LFSAT+P+WVK ++ K+L +
Sbjct: 160 VEYLVLDEADQMLAVGFEEAVESILENL--PTKRQSMLFSATMPTWVKKLARKYL-DNPL 216
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLAD 381
IDLVG++ K + ++ + +S+++ ++ D+I Y+ GG+TI+FT+TK A +++
Sbjct: 217 NIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSL 276
Query: 382 LLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR 438
L + ALHGDI Q QRE TL FR GKF LVAT+VA+RGLDI +V L+I E P
Sbjct: 277 ALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPN 336
Query: 439 DVEAYIHRSGRTGRAGVEAAETITQVS--------------------------------- 465
D E ++HRSGRTGRAG E + + S
Sbjct: 337 DPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSA 396
Query: 466 DSVIPA-----------FKSAAEELLNNSGLSAAELLAKALAKAVGYTE-IKSRSLLSSL 513
D V+ F + A++L G A L+ G+++ SRSLLS
Sbjct: 397 DQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALAAALAHLS---GFSQPPSSRSLLSHE 453
Query: 514 EDHVTVVLEAGKPIYTPSFAFGVLRR-----FLPE---EKVELVKGMALTADG--NGAVF 563
+ VT+ L I P+ A G L FL + + V + L AD GAVF
Sbjct: 454 KGWVTLQL-----IRDPTNARGFLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVF 508
Query: 564 DVP--VADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGRFG 605
D+P +A L + D SL ++ +LPPLQ+ S +G
Sbjct: 509 DLPEEIAKELLEK---DVPEGNSLSMITKLPPLQDDGPSSDNYG 549
>gi|159478160|ref|XP_001697172.1| hypothetical protein CHLREDRAFT_119793 [Chlamydomonas reinhardtii]
gi|158274646|gb|EDP00427.1| predicted protein [Chlamydomonas reinhardtii]
Length = 384
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 222/344 (64%), Gaps = 14/344 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL--TNGPTKAS 179
+ L ++GI SLFP+QA + + G D+V RA+TG GKTLAF LP++E+L +G +
Sbjct: 27 DALANRGIFSLFPVQAQVLEPIASGRDVVCRAKTGSGKTLAFALPVVENLLEVSGLRRPR 86
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ GR+P +VL PTRELA QV +F+ A+ + S YGG AQ L++G+D
Sbjct: 87 TRPRKGRSPRCVVLAPTRELANQVSREFESVCPALKVDS--FYGGVSISAQMRSLERGVD 144
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA--NKVQT 297
VV+GTPGR+ D ++RG++ L ++++ +LDEAD ML MGF +D+E ILG + A N+ QT
Sbjct: 145 VVVGTPGRVIDLMQRGSLKLDAVRYAILDEADSMLDMGFEQDMETILGAMPTAAANERQT 204
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKM-KASTNVRHIVLPCSSSARSQVIPDI 356
LLFSATLP WVK ++ ++ + + TIDLVG E + + +R +V + + + +
Sbjct: 205 LLFSATLPKWVKSVAKRY-QQNPLTIDLVGEENTGRLADTIRLLVQQVEGAQKMSALQGV 263
Query: 357 IRCY---SSGGRTIIFTETKESASQL---ADLLPGARALHGDIQQSQREVTLAGFRSGKF 410
+ Y + GG+ IIF TK A ++ + ALHGDI Q+QRE L+ FR GK+
Sbjct: 264 LSMYGNTAGGGKAIIFVNTKAKADEVNLAVNEFAPCDALHGDISQAQREKALSLFREGKY 323
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLDI +V L++ + P+D EA++HRSGRTGRAG
Sbjct: 324 AALVATDVAARGLDIPNVDLVVHYDVPQDNEAFLHRSGRTGRAG 367
>gi|212274773|ref|NP_001130659.1| uncharacterized protein LOC100191761 [Zea mays]
gi|194689766|gb|ACF78967.1| unknown [Zea mays]
Length = 598
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 194/478 (40%), Positives = 267/478 (55%), Gaps = 69/478 (14%)
Query: 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
GR P VLVL PTRELAKQV ++ + A L + C+YGG Y+ Q+ L +G+DVV+GT
Sbjct: 17 GRTPRVLVLAPTRELAKQVEKE--IKESAPKLGTVCVYGGVSYNVQQNALSRGVDVVVGT 74
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304
PGRI D I G++ L +++ VLDEAD+ML +GF EDVE IL ++ Q++LFSAT+
Sbjct: 75 PGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLPAGR--QSMLFSATM 132
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
PSWVK +S ++L ++ TIDLVG++ K + ++ +P +++++ V+ D+I Y+ GG
Sbjct: 133 PSWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLYAIPLTTTSKRTVLSDLITVYAKGG 191
Query: 365 RTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
+TI+FT TK+ A +++ L + ALHGDI Q QRE TL GFR GKF LVAT+VAAR
Sbjct: 192 KTIVFTRTKKDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 251
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS------- 474
GLDI +V LII E P D E ++HRSGRTGRAG +A I + S KS
Sbjct: 252 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG-KAGTAILMFTSSQKRTVKSLERDVGC 310
Query: 475 --------AAEELLNNSG------------------LSAAE---------LLAKALAKAV 499
+ EE+L +S L AAE LA ALA
Sbjct: 311 NFEFISPPSIEEVLESSAEHVIATLRGVHPESTKYFLGAAEKLTEELGPHALASALAHLS 370
Query: 500 GYTE-IKSRSLLSSLEDHVTVVLEA----GKPIYTPSFAFGVLRRFLPEEKVELVKGMAL 554
G+++ SRSL+S + VT+ L G+ ++P G L E+ K + L
Sbjct: 371 GFSQPPSSRSLISHEQGWVTLQLTREQGFGRGFFSPRSVTGFLSDVCSAAADEVGK-IYL 429
Query: 555 TADGN--GAVFDVP---VADLDLFRSGADNAANVSLEVLKQLPPLQE---REQSRGRF 604
TAD N GAVFD+P DL N +L + +LP LQ+ S GRF
Sbjct: 430 TADENVQGAVFDLPEEIAKDLLTMELPPGN----TLTKISKLPALQDDGPATDSYGRF 483
>gi|302783853|ref|XP_002973699.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
gi|302787961|ref|XP_002975750.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
gi|300156751|gb|EFJ23379.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
gi|300158737|gb|EFJ25359.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
Length = 445
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 153/349 (43%), Positives = 220/349 (63%), Gaps = 10/349 (2%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQ-AMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
AV++ I + L K I +LFP+Q + + + G D + RA+TG GKTLAF LPIL
Sbjct: 5 AVAKLGIDPEIVRALAQKNIINLFPVQQSAVYQPAMKGRDFIARAKTGTGKTLAFGLPIL 64
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
++T +A+ +T G P +V+ PTRELAKQV ++ A LT C+YGG
Sbjct: 65 HTITVERREATSRTQPG-CPRCIVMAPTRELAKQVEKELT--STAPHLTLVCIYGGVSIE 121
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
+Q L++ IDVV+GTPGR+ D ++RG++ L+ +KF VLDEAD+ML GF EDVE I+ +
Sbjct: 122 SQRRSLERPIDVVVGTPGRVIDMLQRGSLLLNRVKFMVLDEADQMLATGFAEDVEKIMER 181
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
+ + QT++FSAT+PSWVK++ +F++ D +DLVG+ K + ++ S
Sbjct: 182 L--PKQRQTMMFSATMPSWVKNLLRRFMQ-DPLVVDLVGDNDEKLAEGIKLYSCEASDYN 238
Query: 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGF 405
+ ++ +++ Y GG+ I+F +TK +A + ALHGDI Q QRE TL+GF
Sbjct: 239 KGPLLKELVNSYGKGGKVIVFAKTKRDTHNVAQAMSRSVPCEALHGDIPQFQRERTLSGF 298
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
R G+F LVAT+VAARGLDI +V L+I E P D E ++HRSGRTGRAG
Sbjct: 299 RDGRFSVLVATDVAARGLDIPNVDLVIHYEVPGDSETFVHRSGRTGRAG 347
>gi|307104451|gb|EFN52705.1| hypothetical protein CHLNCDRAFT_36787, partial [Chlorella
variabilis]
Length = 689
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 159/335 (47%), Positives = 219/335 (65%), Gaps = 18/335 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ +GI SLFPIQ F+ + G+DL+ RA+TG GKTLAF +PI+E + GP
Sbjct: 166 LEERGITSLFPIQKTVFEPAMRGADLIARAKTGSGKTLAFAIPIIEKIMAGPRNL----- 220
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
R P LVL PTRELAKQV + + A GL C YGG P Q +L++G+D+V+G
Sbjct: 221 --RKPQCLVLAPTRELAKQVERE--IAATAPGLGCGCYYGGNPIGPQLKELRRGVDIVVG 276
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGRI D I++ +DLS ++F VLDEAD+ML +GF +DVE IL V + QT+LFSAT
Sbjct: 277 TPGRIIDLIDQDALDLSMVRFVVLDEADQMLNVGFEKDVETILENV--PQERQTMLFSAT 334
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKM-KASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
LP WVK + ++L ++ + IDLVG + ++ + +P + AR V+ D++ Y
Sbjct: 335 LPRWVKKLVKQYL-NNPENIDLVGEGNTGQDPDSITALAVP--ADARRSVLVDLLTVYGE 391
Query: 363 GGRTIIFTETKESASQLADLLPG---ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
GG+ I+FT+TK A ++A + G ALHGD+ Q +RE LA FR+ K M LVAT+VA
Sbjct: 392 GGKAIVFTQTKREADEVAASVGGHLPCGALHGDMSQREREKVLASFRANKLMVLVATDVA 451
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
ARGLDI DV +++ E P+D E+++HRSGRTGRAG
Sbjct: 452 ARGLDIPDVDVVVHYELPQDPESFLHRSGRTGRAG 486
>gi|403274101|ref|XP_003928827.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Saimiri boliviensis
boliviensis]
Length = 722
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 213/651 (32%), Positives = 309/651 (47%), Gaps = 123/651 (18%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKTKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKGLPNGDIDEYEKKSKRVSSLDSSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLPGAR 387
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA------- 406
Query: 388 ALHGDIQQSQREV---------TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQC--EP 436
++ I+Q+ + + + GF +L+ V + +Q +
Sbjct: 407 -MNPHIKQNAKSILEPLPRSFSSAWGFVLESDHSLLVLKVYIGPSLLQSLQTLTWAPHNH 465
Query: 437 PRDVEAYIHRSGRTGRAG------------------------------------------ 454
P+DVE+YIHRSGRTGRAG
Sbjct: 466 PQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKS 525
Query: 455 --VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSS 512
++A ++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S
Sbjct: 526 KSMDAIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITS 583
Query: 513 LEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVF 563
+ VT+ LE+ + I S A+ L R L V + M L GN A +
Sbjct: 584 DKGFVTMTLESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLK-GNMAEW 633
>gi|301108607|ref|XP_002903385.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262097757|gb|EEY55809.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 666
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/366 (41%), Positives = 222/366 (60%), Gaps = 43/366 (11%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
+EP G +Q+ ++ F +S + L+ G+ LFP+Q +FD+++ GSD++
Sbjct: 72 LEPLQGFVDQK--------PIADFDLSQETQRNLERAGVTHLFPVQTQSFDVMMKGSDIM 123
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
GR++TG GKTLAF LP +E++ A++K R P LVLLPTRELA+QVH+ V
Sbjct: 124 GRSKTGSGKTLAFALPTIETIL-----ANRKNT--RNPQALVLLPTRELAQQVHDQ--VQ 174
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
A L + + GG Y QE +L++G+D+++GTPGRI D +++G++ L + VLDEA
Sbjct: 175 RVAPQLRTINVVGGVSYTVQENQLRRGVDILVGTPGRIMDLVDKGSLSLEDVDVSVLDEA 234
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
D ML+ GF E VE ILG V D QTL+ IDLVG+
Sbjct: 235 DMMLKFGFQEAVETILGWVPDGG--QTLV----------------------NIDLVGDND 270
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG--ARA 388
V H + S R QV+ +++R ++ G+T++FTETK+ A ++A+ LPG ARA
Sbjct: 271 NHVPATVAHKAILAPSRDRIQVLENVLRLHAHDGQTLVFTETKQEADEIANSLPGQDARA 330
Query: 389 LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSG 448
LHGD+ Q R T+ GFR+G TLV T++AARGLDI +V+L++Q P D E+++HR+G
Sbjct: 331 LHGDLSQGMRTSTMNGFRNGHVKTLVCTDIAARGLDIANVELVVQYRLPSDKESFVHRAG 390
Query: 449 RTGRAG 454
RTGRAG
Sbjct: 391 RTGRAG 396
>gi|108711873|gb|ABF99668.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
Length = 596
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 181/436 (41%), Positives = 248/436 (56%), Gaps = 63/436 (14%)
Query: 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
GR P VLVL PTRELAKQV ++ + A L++ C+YGG Y+ Q+ L +G+DVV+GT
Sbjct: 17 GRIPRVLVLAPTRELAKQVEKE--IKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGT 74
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304
PGRI D I G++ L +K+ VLDEAD+ML +GF EDVE IL ++ + Q++LFSAT+
Sbjct: 75 PGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQL--PAERQSMLFSATM 132
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P WVK +S ++L ++ TIDLVG++ K + ++ +P +S+++ V+ D+I Y+ GG
Sbjct: 133 PGWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGG 191
Query: 365 RTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR GKF LVAT+VAAR
Sbjct: 192 KTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 251
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG----------------VEAAE------ 459
GLDI +V LII E P D E ++HRSGRTGRAG V + E
Sbjct: 252 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCR 311
Query: 460 ----------------------TITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAK 497
T+ V I F AAE L G +A LA ALA
Sbjct: 312 FDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNA---LASALAH 368
Query: 498 AVGYTE-IKSRSLLSSLEDHVTVVLE----AGKPIYTPSFAFGVLRRFLPEEKVELVKGM 552
G+++ SRSL+S + VT+ L G+ ++P G L E+ K +
Sbjct: 369 LSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGK-I 427
Query: 553 ALTADG--NGAVFDVP 566
LTAD GAVFD+P
Sbjct: 428 FLTADEKVQGAVFDLP 443
>gi|108711872|gb|ABF99667.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|215686855|dbj|BAG89705.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 597
Score = 276 bits (705), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 193/477 (40%), Positives = 262/477 (54%), Gaps = 67/477 (14%)
Query: 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
GR P VLVL PTRELAKQV ++ + A L++ C+YGG Y+ Q+ L +G+DVV+GT
Sbjct: 17 GRIPRVLVLAPTRELAKQVEKE--IKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGT 74
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304
PGRI D I G++ L +K+ VLDEAD+ML +GF EDVE IL ++ + Q++LFSAT+
Sbjct: 75 PGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQL--PAERQSMLFSATM 132
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P WVK +S ++L ++ TIDLVG++ K + ++ +P +S+++ V+ D+I Y+ GG
Sbjct: 133 PGWVKKLSRRYL-NNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGG 191
Query: 365 RTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR GKF LVAT+VAAR
Sbjct: 192 KTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 251
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG----------------VEAAE------ 459
GLDI +V LII E P D E ++HRSGRTGRAG V + E
Sbjct: 252 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCR 311
Query: 460 ----------------------TITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAK 497
T+ V I F AAE L G +A LA ALA
Sbjct: 312 FDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNA---LASALAH 368
Query: 498 AVGYTE-IKSRSLLSSLEDHVTVVLE----AGKPIYTPSFAFGVLRRFLPEEKVELVKGM 552
G+++ SRSL+S + VT+ L G+ ++P G L E+ K +
Sbjct: 369 LSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGK-I 427
Query: 553 ALTADG--NGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE---REQSRGRF 604
LTAD GAVFD+P S N +V K LP LQ+ S GRF
Sbjct: 428 FLTADEKVQGAVFDLPEEIARDLLSMELPPGNTITKVTK-LPALQDDGPATDSYGRF 483
>gi|308080376|ref|NP_001183357.1| uncharacterized protein LOC100501766 [Zea mays]
gi|223949963|gb|ACN29065.1| unknown [Zea mays]
gi|238010976|gb|ACR36523.1| unknown [Zea mays]
Length = 483
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 145/314 (46%), Positives = 211/314 (67%), Gaps = 13/314 (4%)
Query: 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203
+ G D+VGRA+TG GKTLAF +PI++++ + ++K G+ P +VL PTRELAKQV
Sbjct: 1 MQGRDMVGRAKTGTGKTLAFGIPIMDAII----RHNEKYKPGKFPLAIVLAPTRELAKQV 56
Query: 204 HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263
+F + L + C+YGG P Q KL G+DVVIGTPGR+ D ++RG++ L+ ++
Sbjct: 57 EREF---LDSSPLETLCVYGGTPIMQQIRKLNYGVDVVIGTPGRVIDLLKRGSLSLAEIR 113
Query: 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
F VLDEAD+ML +GF DVE IL +V QTL+FSAT+P+W++ ++ K+L ++ T+
Sbjct: 114 FVVLDEADQMLSVGFDLDVETILERVPPQR--QTLMFSATMPTWIRKLTQKYL-NNPVTV 170
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL 383
DLVG + K + + + + + + V+ ++I+ ++ GG+ I+FT+TK A +L+ +
Sbjct: 171 DLVGEDDQKLAEGISLLAVSSENREKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSHNM 230
Query: 384 P---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
ALHGDI QSQRE TLAGFR G+F L+AT+VAARGLDI +V L+I E P
Sbjct: 231 SRSFQCEALHGDISQSQRERTLAGFRDGRFNILIATDVAARGLDIPNVDLVIHFELPNSS 290
Query: 441 EAYIHRSGRTGRAG 454
E ++HRSGRTGRAG
Sbjct: 291 ELFVHRSGRTGRAG 304
>gi|414877991|tpg|DAA55122.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 472
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 144/314 (45%), Positives = 210/314 (66%), Gaps = 13/314 (4%)
Query: 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203
+ G D+VGRA+TG GKTLAF +PI++++ + ++K G+ P +VL PTRELAKQV
Sbjct: 1 MQGRDMVGRAKTGTGKTLAFGIPIMDAII----RHNEKYKPGKFPLAIVLAPTRELAKQV 56
Query: 204 HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263
+F + L + C+YGG P Q +L G+DVVIGTPGR+ D ++RG + L+ ++
Sbjct: 57 EREF---LDSSPLETLCVYGGTPIMQQIKQLNYGVDVVIGTPGRVIDLLKRGALSLAEIR 113
Query: 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
F VLDEAD+ML +GF +DVE IL +V + QTL+FSAT+P+W++ ++ KFL S T+
Sbjct: 114 FVVLDEADQMLSVGFDKDVETILERVPPQH--QTLMFSATMPTWIRKLTQKFLNS-PVTV 170
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL 383
DLVG + K + + + + + + V+ +I+ ++ GG+ I+FT+TK A +L+ +
Sbjct: 171 DLVGEDDQKLAEGISLLSVSSENREKPAVLGKLIKEHAKGGKCIVFTQTKRDADRLSHNM 230
Query: 384 P---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
ALHGDI QS+RE TLAGFR G+F L+AT+VA+RGLDI +V L+I E P
Sbjct: 231 SRSFQCEALHGDISQSERERTLAGFRDGRFNILIATDVASRGLDIPNVDLVIHFELPNSS 290
Query: 441 EAYIHRSGRTGRAG 454
E ++HRSGRTGRAG
Sbjct: 291 EIFVHRSGRTGRAG 304
>gi|237829833|ref|XP_002364214.1| nucleolar RNA helicase, putative [Toxoplasma gondii ME49]
gi|211961878|gb|EEA97073.1| nucleolar RNA helicase, putative [Toxoplasma gondii ME49]
gi|221507078|gb|EEE32682.1| nucleolar RNA helicase, putative [Toxoplasma gondii VEG]
Length = 840
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 179/479 (37%), Positives = 261/479 (54%), Gaps = 54/479 (11%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKES-EIEEEEERSETSSELGEP-- 74
M + A F E A S +K+S++ E+ E + ++R + ++E G+P
Sbjct: 1 MAPETAKSRFSREEGAAARPSKRRKRSEEASEETDTPETVEAQSAKKRRQATTEAGKPSA 60
Query: 75 -VNLKSEKEKKKKKK---------AKVEPEAGVEEQER------GESEHPNA----VSRF 114
V+ S + KK K EP + EE + ES P + +S +
Sbjct: 61 TVSGSSSRSAASKKTRCRDDSDDLLKAEPSSSKEENDEQDGDSDAESGRPASDSGLLSDY 120
Query: 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG 174
+S + L+ +GI L P+Q + V G D VGRARTG GKT+AF LP++E +
Sbjct: 121 NLSKTSLKSLQKRGITRLLPVQQAAYRHVFAGRDFVGRARTGTGKTIAFALPLVERVCAS 180
Query: 175 -PTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
P + K P ++ LLPTRELA+QV E+F+ G L S CLYGGAP + Q K
Sbjct: 181 LPQPGNSK----EKPRIVTLLPTRELAQQVQEEFETLLGG-RLASVCLYGGAPEYPQLQK 235
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL------- 286
L+ G+ V++ PGR KD ++RG I L+ VLDEAD ML MGF EDVE IL
Sbjct: 236 LRSGVSVIVACPGRFKDFMDRGEIAGKQLEAVVLDEADRMLEMGFREDVEEILQWTRKER 295
Query: 287 --GKVEDANKVQTLLFSATLPSWVKHISTKFLKSD---------KKTIDLVGNEKMKAST 335
G+ E + +Q LLF+ATLP W ++ +F++ D ++T + + K T
Sbjct: 296 EEGEAEKTSSLQMLLFTATLPKWALTLADRFMRKDRVVVDVVKLQQTTETALCAEKKQGT 355
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGG---RTIIFTETKESASQLA---DLLPGARAL 389
+ H+V+ C+ +R+QV+ D++ Y+ G IIF ETK+ + +A ++ L
Sbjct: 356 -IEHLVVFCAWQSRAQVLGDLLALYTPPGLASSVIIFAETKQEVNSIAVASNIRHLCAPL 414
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSG 448
HGDI Q+QRE TL F+ GKF+ LVAT+VAARGL ++D+ L+IQ PPRDV+ YIHR+G
Sbjct: 415 HGDIPQNQREATLNAFKKGKFVCLVATDVAARGLHVDDLSLVIQISPPRDVDTYIHRAG 473
>gi|328949667|ref|YP_004367002.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
DSM 14884]
gi|328449991|gb|AEB10892.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
DSM 14884]
Length = 517
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/339 (45%), Positives = 205/339 (60%), Gaps = 21/339 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+++ L+ +G +L P+QA T L+G D++ +ARTG GKTLAF LPI E L P +A
Sbjct: 12 VQQALRERGFTTLTPVQAATLPHALEGRDVIAQARTGTGKTLAFALPIAERLE--PARAK 69
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
GRAP LVL PTRELA QV + D A L +YGG Y Q L++G D
Sbjct: 70 -----GRAPRALVLAPTRELALQVAGELD--WAAPHLEVLTVYGGTGYGQQAQALRRGCD 122
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+ TPGR D++ RG +DL+ ++ VLDEADEML MGF EDVE +L A QTL+
Sbjct: 123 VVVATPGRALDYLRRGVLDLARVEVVVLDEADEMLSMGFEEDVEALLAAAVSAR--QTLV 180
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+PSW + ++ + LK D +LV +E + R + + ++ R V+ D++
Sbjct: 181 FSATMPSWARRLAERHLK-DPFVANLVKDE----AVTYRELAIEAPTATRIAVLSDVLHA 235
Query: 360 YSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVA 415
Y +G R I+FT TK LA L G R A+HGD+ Q+ RE +A FR G LVA
Sbjct: 236 YGAG-RAIVFTRTKAETDALATALAGRRHAAEAVHGDLSQAARERVVARFRKGLVRVLVA 294
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
T+VAARGLD+ +V+L++ P VE Y HRSGRTGRAG
Sbjct: 295 TDVAARGLDVPEVELVVHYRLPERVEVYQHRSGRTGRAG 333
>gi|426364976|ref|XP_004049567.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Gorilla gorilla
gorilla]
Length = 633
Score = 264 bits (675), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 197/619 (31%), Positives = 298/619 (48%), Gaps = 97/619 (15%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 NAVSRFR------ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
++ ++ S+ ++ +G+ LFPIQ TF V +G DL+ +ARTG GKT +
Sbjct: 121 SSDNKLEEVTAALRSILIKSHFTGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFS 180
Query: 163 FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCL 221
F +P++E L K R+P VLVL PTRELA QV +DF D+ L+ C
Sbjct: 181 FAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACF 233
Query: 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281
YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E
Sbjct: 234 YGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQ 293
Query: 282 VELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338
VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V
Sbjct: 294 VEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVE 353
Query: 339 HIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLPGARALHGDIQQSQ 397
H+ + C S R VI D+++ YS S GR IIF ETK++ +++ A++ I+Q
Sbjct: 354 HLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEM--------AMNPHIKQG- 404
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEA 457
+T M LV + ++A
Sbjct: 405 --ITFKRVGVPSTMDLVKSK------------------------------------SMDA 426
Query: 458 AETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHV 517
++ VS + + F+ +A+ L+ G A + LA ALA G + + RSL++S + V
Sbjct: 427 IRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAHISGASSFEPRSLITSDKGFV 484
Query: 518 TVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGA 577
T+ LE+ + I S A+ L R L V + M L G FDVP + + ++
Sbjct: 485 TMTLESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEW 544
Query: 578 DNAANVSLEVLKQLPPLQE 596
++ + L V +LP ++E
Sbjct: 545 HDSDWI-LSVPAKLPEIEE 562
>gi|134096391|ref|YP_001101466.1| cold-shock DeaD box ATP-dependent RNA helicase (partial match)
[Herminiimonas arsenicoxydans]
gi|133740294|emb|CAL63345.1| putative ATP-dependent RNA helicase DeaD-like [Herminiimonas
arsenicoxydans]
Length = 826
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 157/348 (45%), Positives = 206/348 (59%), Gaps = 21/348 (6%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S +S PL LK G E+ PIQA T ++L+ SD++G+A+TG GKT AF LPIL +
Sbjct: 10 SDLNLSEPLLRVLKELGYEAPSPIQAATIPLLLNNSDVLGQAQTGTGKTAAFALPILSRI 69
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQ 230
T P LVL PTRELA QV E F Y + G +YGG Y AQ
Sbjct: 70 DIKQT----------TPQALVLAPTRELAIQVAEAFQRYASHIPGFHVLPIYGGQSYGAQ 119
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L++G+ VV+GTPGR+ DH+E+G++DLS LK VLDEADEMLRMGF++DVE IL K
Sbjct: 120 LSALRRGVHVVVGTPGRVIDHLEKGSLDLSKLKTMVLDEADEMLRMGFIDDVETILQKTP 179
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+A QT LFSAT+PS +K I+T +L+ D + I + K + N+R S +
Sbjct: 180 EAR--QTALFSATMPSAIKRIATTYLR-DPELITVAA--KTGTADNIRQRYWLVSGMQKL 234
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFR 406
+ + I+ + G IIF TK +LA L A A++GDIQQ QRE T+ +
Sbjct: 235 EALTRILEAETFDG-MIIFARTKLGTEELAGKLQARGFSAAAINGDIQQQQRERTIQQLK 293
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
GK LVAT+VAARGLD+ + +I + P D E+Y HR GRTGRAG
Sbjct: 294 DGKIDILVATDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAG 341
>gi|340053887|emb|CCC48181.1| putative nucleolar RNA helicase II, fragment [Trypanosoma vivax
Y486]
Length = 567
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 195/579 (33%), Positives = 277/579 (47%), Gaps = 125/579 (21%)
Query: 80 EKEKKKKKKAKVE---PEAGVEEQ-ERGESEHPNAVSRFRISVPLREKLKSKGIESLFPI 135
E + K+A+ E P A EEQ G + S F +S + + L+ +GI SLFP+
Sbjct: 14 EGDANSAKRARTEDNRPTAADEEQPNNGSAAAGRPFSEFNLSSGIVQALEKQGIVSLFPV 73
Query: 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE---SLTNGPTKASKKTGYGRAPSVLV 192
QA+TF+ ++ G D++ +ARTG GKTLAF +PI+E SL GPT+ GR P+ ++
Sbjct: 74 QALTFEAIMRGEDVLVQARTGSGKTLAFGIPIIEKLNSLKEGPTR-------GRGPAAVI 126
Query: 193 LLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDH 251
PTRELA QV DV G G L+ LYGG Y+ QE L G+DVV+ TPGR KD
Sbjct: 127 FCPTRELAIQVR---DVIAGISGGLSVTALYGGVAYNVQERALYSGVDVVVATPGRAKDF 183
Query: 252 IERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN-------KVQTLLFSATL 304
+E+G + +K LDEAD ML +GF ED+EL+L +V + N K QTLLFSAT+
Sbjct: 184 LEKGTLRFDRVKMVCLDEADHMLDIGFKEDIELLLQRVAEQNGSVPNEPKHQTLLFSATV 243
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P WV S F+ +KK ID+VG M+A+ ++ CS S ++ D+++ YS G
Sbjct: 244 PDWVHTCS--FISKNKKFIDMVGQGAMRAANTIKFYRRKCSFGEVSGMLADLVKAYS--G 299
Query: 365 RTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
R HG TLV TN +
Sbjct: 300 R------------------------HG-------------------RTLVFTNTKK---N 313
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------------------------ 454
+ V L+IQC PP D++A+IHR+GRTGRAG
Sbjct: 314 LPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVMLHQPKDEYIVERIERHAKIKFEV 373
Query: 455 --------------VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVG 500
+AAE + +V S F A ELL ++ E+LA A+A G
Sbjct: 374 LPAPTREEILKAVARDAAEDLARVERSATNLFLEQAAELLKDA--DPTEILASAIAVMSG 431
Query: 501 YT-EIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGN 559
YT I R L++ + T+ + +P+ +F +LR L + + + L D
Sbjct: 432 YTSNITKRGLITGAQGSSTIQMVGQRPLPIHAFC-SILRNNLGDHLFTRCRDITLLQDMP 490
Query: 560 GAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQERE 598
G VFDVP + + + + L V++ LPP+ RE
Sbjct: 491 GCVFDVPEELVPQILAAPIHG--MELSVIETLPPIIARE 527
>gi|452819914|gb|EME26964.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 671
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 152/351 (43%), Positives = 216/351 (61%), Gaps = 22/351 (6%)
Query: 117 SVPLRE----KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT 172
++P+RE +LK+ GI LFP+Q ++ + G D+V R++TG GKTLA+VLP++E +
Sbjct: 85 NLPIREETKERLKASGITRLFPVQQKCWNPIWQGKDVVVRSQTGTGKTLAYVLPLIEKAS 144
Query: 173 NGPTKA-SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
G KA +K+TG +P ++VL PTRELA+QV E+F L C+YGGAPY QE
Sbjct: 145 LGHFKAHTKRTG---SPFIVVLAPTRELARQVFEEFGKL--ETTLLGACIYGGAPYRPQE 199
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
+L+ + ++GTPGR+ D + + L ++ VLDEAD ML +GF ++E IL V
Sbjct: 200 EQLRNCLSFLVGTPGRVADMCRKNLLHLELVQCIVLDEADRMLEIGFASELEQILSAV-S 258
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK-MKASTNVRHIVLPCSSSARS 350
NK QTLLFSATLP+WVK S K ++ + +DLVG +K K +V+H + A+
Sbjct: 259 GNK-QTLLFSATLPTWVKQQSAKNMR-NPAFLDLVGEDKDAKIPKDVKHYAIEVPPFAKE 316
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVTLAGFRS 407
VI DI+ + G + IIFT TK A L + + +HGDI Q RE+ + GFR
Sbjct: 317 AVIGDILSVF-GGEKCIIFTPTKREADMLGSSEYIRDESTVIHGDIPQDGRELAINGFRK 375
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQ----CEPPRDVEAYIHRSGRTGRAG 454
GKF L+AT+VAARG+DI +V ++ P ++ Y+HRSGRTGRAG
Sbjct: 376 GKFRNLIATDVAARGIDIPNVDFVLMTYTPTPTPESIDMYVHRSGRTGRAG 426
>gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977]
Length = 528
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 151/335 (45%), Positives = 200/335 (59%), Gaps = 21/335 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ KGI + PIQ L G D++G ARTG GKTLAF LPI E L T
Sbjct: 24 LEEKGIATPTPIQNEALPAALAGGDVLGLARTGTGKTLAFALPIAERLEPSRTP------ 77
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
GR P LVL PTRELA QV + + A L +YGG Y +Q LK+G DVV+
Sbjct: 78 -GRPPRALVLAPTRELALQVAGELEWV--APHLRIVTVYGGTGYGSQAAALKRGADVVVA 134
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR D++ RG +DL+ ++ VLDEADEML MGF E VE +LG + QTL+FSAT
Sbjct: 135 TPGRAIDYLNRGVLDLAQVRIAVLDEADEMLSMGFEEAVETLLGAT--PAERQTLMFSAT 192
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
LP W K + + LK + +++V +E++ + R I + S SAR + D++ +
Sbjct: 193 LPGWAKRLVGRHLK-EPTVVNVVQDEEV----SYREIAIEASPSARMSALSDLLHAHGPE 247
Query: 364 GRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
R I+FT TK+ A ++A L A A+HGD+ Q+QRE ++ FRSG+ LVAT+VA
Sbjct: 248 -RAIVFTRTKKEADEVARALTARGHAAEAVHGDLNQTQRERSVGRFRSGQVGVLVATDVA 306
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
ARGLDI +V L++ P E+Y HRSGRTGRAG
Sbjct: 307 ARGLDIPEVDLVVHLRLPERAESYQHRSGRTGRAG 341
>gi|326329383|ref|ZP_08195707.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
gi|325952709|gb|EGD44725.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
Length = 615
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 172/438 (39%), Positives = 240/438 (54%), Gaps = 40/438 (9%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S + E +K+ G E+ IQA T +L G D+VG A+TG GKT AF LP+L +L
Sbjct: 34 LSAGVLEAVKALGYETPSAIQAATIPTLLQGRDVVGLAQTGTGKTAAFALPVLSNLDV-- 91
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
Y AP LVL PTRELA QV E F+ Y + G+ +YGG Y Q L
Sbjct: 92 --------YQNAPQALVLAPTRELALQVCEAFERYASNLDGVRILPVYGGQGYGPQLTAL 143
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G+ VV+GTPGRI DH+E+G +DLS L+F VLDEADEML MGF EDVE IL E
Sbjct: 144 RRGVHVVVGTPGRIMDHLEKGTLDLSQLRFLVLDEADEMLNMGFAEDVETILA--ETPED 201
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P+ ++ +S K+L+ D + I + K + +TN+ L S + +
Sbjct: 202 KQVALFSATMPAQIRRLSKKYLR-DAEEISV--KAKTQTNTNITQRYLMVSYPQKVDALT 258
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I+ + G I+FT TK LA+ L A A++GDI Q+QRE T+ + G
Sbjct: 259 RILEVENFEG-MIVFTRTKSETESLAEKLRARGFAATAINGDIAQAQREKTVNQLKDGSL 317
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIP 470
LVAT+VAARGLD+ + ++ + P DVEAY+HR GRTGRAG + D++
Sbjct: 318 DILVATDVAARGLDVERISHVVNYDLPTDVEAYVHRIGRTGRAG--------RTGDAI-- 367
Query: 471 AFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIK--SRSLLSSLEDHVTVVLEAGKPIY 528
+F + E L L A E KA + + + + LS +D +T L+ G+ I
Sbjct: 368 SFVTPRERWL----LRAIEKHTKAQPVQMQLPSVDEVNATRLSRFDDGITAALQEGEKI- 422
Query: 529 TPSFAFGVLRRFLPEEKV 546
F V+R ++ E V
Sbjct: 423 --EFFRDVVRHYVDEHDV 438
>gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281176|gb|ABR89586.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 778
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 152/346 (43%), Positives = 203/346 (58%), Gaps = 21/346 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
++S PL L+ G ES PIQA T ++L+ D++G+A+TG GKT +F LPIL +
Sbjct: 12 LKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILARIDI 71
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEF 232
T P LVL PTRELA QV E F Y + G +YGG Y AQ
Sbjct: 72 KQT----------TPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLS 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G+ VV+GTPGR+ DH+E+G++DLS +K VLDEADEMLRMGF++DVE IL K ++
Sbjct: 122 ALRRGVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPES 181
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
QT LFSAT+PS +K I+T +L+ D I + K + N+R S +
Sbjct: 182 R--QTALFSATMPSAIKRIATTYLR-DPDLITVAA--KTGTADNIRQRYWLVSGMQKLDA 236
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
+ I+ + G IIF TK +LA L A A++GDIQQ QRE T+ + G
Sbjct: 237 LTRILEAENFDG-MIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDG 295
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
K LVAT+VAARGLD+ + +I + P D E+Y HR GRTGRAG
Sbjct: 296 KIDILVATDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAG 341
>gi|378549072|ref|ZP_09824288.1| hypothetical protein CCH26_03255 [Citricoccus sp. CH26A]
Length = 631
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 150/381 (39%), Positives = 215/381 (56%), Gaps = 15/381 (3%)
Query: 79 SEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAM 138
SE + +A+ E + E E+ A S I + ++ G E+ PIQA
Sbjct: 2 SEHAQNDHAQAQAETDTPTETDALTETPAGPAFSTLGIDSRVLAAIEDLGYETPSPIQAE 61
Query: 139 TFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198
T ++L+G D+VG A+TG GKT AF +P L L + + G P +LVL PTRE
Sbjct: 62 TIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLA----ELADVNGPANTPQILVLAPTRE 117
Query: 199 LAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI 257
LA QV E F Y + G+T +YGGAPY Q L++G VV+GTPGR+ DH+++G++
Sbjct: 118 LALQVAEAFTTYAKHIKGVTVLPVYGGAPYGPQLSGLRRGAQVVVGTPGRVIDHLQKGSL 177
Query: 258 DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLK 317
DLS L++ VLDEADEMLRMGF E+V+ IL D + QT LFSAT+P ++ IS K+L
Sbjct: 178 DLSDLQYMVLDEADEMLRMGFAEEVDQILSATPD--QKQTALFSATMPRAIQRISGKYLN 235
Query: 318 SDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESAS 377
+++ K + N+R L + + + + I+ G I F T+ +
Sbjct: 236 D---PVEVTVAAKNTTAGNIRQRFLQVTHQWKLEAMTRILETEEHDG-VIAFVRTRNATE 291
Query: 378 QLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ 433
+L L A A+ GD+ Q+QRE T+ R+G+ LVAT+VAARGLD+ + +I
Sbjct: 292 ELTTKLNARGFRAAAISGDVAQNQREKTVENLRAGRIDILVATDVAARGLDVERISHVIN 351
Query: 434 CEPPRDVEAYIHRSGRTGRAG 454
+ P D E+Y+HR GRTGRAG
Sbjct: 352 YDIPHDTESYVHRIGRTGRAG 372
>gi|116073020|ref|ZP_01470282.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
gi|116068325|gb|EAU74077.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
Length = 599
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 147/354 (41%), Positives = 210/354 (59%), Gaps = 21/354 (5%)
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
E P+ + F S L + L KG + PIQA F ++ G DLVG+A+TG GKT AF L
Sbjct: 40 EEPSGFAGFGFSEALVKTLTEKGYKEPSPIQAAAFPELMLGRDLVGQAQTGTGKTAAFAL 99
Query: 166 PILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLYGG 224
P+LE L TK P LVL PTRELA QV E F Y G L +YGG
Sbjct: 100 PLLERLQKDATK----------PQALVLAPTRELAMQVAESFKAYSAGHPHLNVLAIYGG 149
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
+ + +Q LK+G+DVV+GTPGR+ DH+ +G +D + L+ VLDEADEMLRMGF++DVE
Sbjct: 150 SDFRSQIHALKRGVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEW 209
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
IL ++ + +V +LFSAT+PS ++ +S ++L ++ ++ K K + +R +
Sbjct: 210 ILDQLPEERQV--VLFSATMPSEIRRLSKRYL---REPAEITIKTKEKEARRIRQRCITL 264
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREV 400
+S + + + ++ + G IIF TK +++ L A L+GD+ Q+QRE
Sbjct: 265 QNSHKLEALNRVLEAVTGEG-VIIFARTKAITLNVSESLEAAGHDVAVLNGDVPQNQRER 323
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
T+ R G LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG
Sbjct: 324 TVERLRKGTVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAG 377
>gi|297625843|ref|YP_003687606.1| hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296921608|emb|CBL56162.1| Hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 1043
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 168/494 (34%), Positives = 273/494 (55%), Gaps = 42/494 (8%)
Query: 11 EVKDEKKMNKKMALKDFEE--TEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETS 68
E + +N + A + EE + ++ E+++D+ ++++ S + + +E SE +
Sbjct: 507 EQANSDNVNPEHANPENEEIVNQTSVAEQATDESAAEQQASVTQNTDQPAIDESTTSEPA 566
Query: 69 SELGEPVNLKSEKEKKKKKKAKVE-PEAGVEEQERGESE-----HPNAVSRFR---ISVP 119
+ G P + + ++++ A+ E P V +ER + +RF + P
Sbjct: 567 T--GRPDDAPATANRRRESNARTEHPHGAVRREERDDDRVEPVRRQKGRTRFSELGVPQP 624
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ E+L S+GI + FPIQ L G D++GR +TG GKTLAF +P++ L A+
Sbjct: 625 IVEELDSQGILAPFPIQQAAIPDALSGRDVLGRGQTGSGKTLAFGIPVITRL------AA 678
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
TG+GR P L++ PTRELA+QV++ A+GL++ + GG Y Q L++G+D
Sbjct: 679 SGTGHGRQPRALLMAPTRELAQQVNDVLFPLAKAMGLSTILVAGGMSYTPQLRALERGVD 738
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+ TPGR+ D IERG+ L ++ VLDEADEM MGF+ DV IL ++ + + Q LL
Sbjct: 739 IVVATPGRLIDLIERGSAKLGEVQEVVLDEADEMADMGFMPDVTRILDEI--SREAQHLL 796
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLV--GNEKMKAS-TNVRHIVLPCSSSARSQVIPDI 356
FSATL V I +++ D V G + KAS T +RH + ++ ++ + I
Sbjct: 797 FSATLDRQVDTIVRRYMH------DPVEHGVDSAKASVTTMRHELWTVNARDKAAI---I 847
Query: 357 IRCYSSGGRTIIFTETK----ESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMT 412
+ + GRT++F T+ +A QL DL A ALHG + Q R L FR G+
Sbjct: 848 AQAANRPGRTLVFVRTQRDADRTAEQLRDLGLMAGALHGGLPQGMRARVLYAFRQGRVPV 907
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAF 472
LVAT+VAARG+D++DV L++Q +PP D + Y+HR+GRT RAG + V+ V+P
Sbjct: 908 LVATDVAARGIDVDDVSLVLQADPPHDSKDYLHRAGRTARAGEDGL-----VATLVLPRA 962
Query: 473 KSAAEELLNNSGLS 486
+ ++ ++G++
Sbjct: 963 RGRMARIMRDAGVN 976
>gi|445494630|ref|ZP_21461674.1| ATP-dependent RNA helicase [Janthinobacterium sp. HH01]
gi|444790791|gb|ELX12338.1| ATP-dependent RNA helicase [Janthinobacterium sp. HH01]
Length = 743
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 150/346 (43%), Positives = 203/346 (58%), Gaps = 21/346 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+S PL + LK G ES PIQA T +LD D++G+A+TG GKT AF LPIL L
Sbjct: 15 LNLSAPLIKVLKEVGYESPSPIQAATIPSLLDNQDVLGQAQTGTGKTAAFALPILSRLDI 74
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEF 232
T P LVL PTRELA QV E F Y + G +YGG Y Q
Sbjct: 75 KQT----------TPQALVLAPTRELAIQVAEAFQTYATHIPGFHVLPIYGGQSYGPQLS 124
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G+ VV+GTPGR+ DH+++G++DLS LK VLDEADEMLRMGF++DVE IL + ++
Sbjct: 125 ALRRGVHVVVGTPGRVIDHLDKGSLDLSKLKTLVLDEADEMLRMGFIDDVERILQETPES 184
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
QT LFSAT+PS ++ I+ +L++ K ++ K + N+R S +
Sbjct: 185 R--QTALFSATMPSAIRRIANTYLRNPK---EITVAAKTGTNENIRQRYWLVSGMHKLDA 239
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
+ I+ + G IIF+ TK +LA L A A++GDIQQ+QRE T+ + G
Sbjct: 240 LTRILEAENFDG-MIIFSRTKLGTEELAQKLQARGFSAAAINGDIQQAQRERTIQQLKDG 298
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
K LVAT+VAARGLD+ + ++ + P D E+Y HR GRTGRAG
Sbjct: 299 KIDILVATDVAARGLDVERISHVVNYDVPHDPESYTHRIGRTGRAG 344
>gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
Length = 570
Score = 254 bits (650), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 143/343 (41%), Positives = 200/343 (58%), Gaps = 21/343 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L+ G E+ PIQA+T +LDG D++G+A+TG GKT AF LPIL + +
Sbjct: 16 PVLKALEDAGYETPTPIQALTIPPILDGRDIIGQAQTGTGKTAAFALPILSQIDISNSD- 74
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
P LVL PTRELA QV E F Y + G +YGG YH Q +L++
Sbjct: 75 ---------PQALVLAPTRELALQVAEAFQSYASHLKGFHVLPIYGGQSYHVQLKQLRRA 125
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
V++GTPGR+ DHI+RG + L +LKF VLDEADEMLRMGF+EDVE ++ + + +V
Sbjct: 126 AHVIVGTPGRVIDHIKRGTLKLDNLKFLVLDEADEMLRMGFIEDVEWVISQTPQSRQVA- 184
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P+ ++ I+ K+L S + +L + K + +R P S + + I+
Sbjct: 185 -LFSATMPAAIRKIAQKYLNSPQ---ELAVKNQSKTADTIRQRFWPVSGYHKLDALTRIL 240
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G I+F TK + +L++ L L GD+ Q+QRE T+ R GK L
Sbjct: 241 EVEDFDG-MIVFVRTKVATVELSEKLEARGYNTAPLSGDVPQNQRERTVERLRQGKLDIL 299
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
VAT+VAARGLD+ + +I + P D EAY+HR GRTGRAG E
Sbjct: 300 VATDVAARGLDVERISHVINYDMPYDPEAYVHRIGRTGRAGRE 342
>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
Length = 695
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 159/400 (39%), Positives = 227/400 (56%), Gaps = 23/400 (5%)
Query: 66 ETSSELGE-PVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFR---ISVPLR 121
E+S E GE P N K++ + + + + A + E E +RF + +
Sbjct: 57 ESSLETGEKPTNEKADAAESMTAEPREDNAATKKNTEDNTHESHEEGTRFTDLGLDPRVL 116
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
L+ G E PIQ T ++LDG D+VG A+TG GKT AF LP L + + +
Sbjct: 117 SALEEVGYEKPSPIQEQTIPLLLDGKDVVGLAQTGTGKTAAFALPALSRMA----ELADI 172
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
G R VLVL PTRELA QV E F Y + T +YGG+PY Q L++G V
Sbjct: 173 NGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQV 232
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH+E+G++DLS+L++ VLDEADEMLRMGF EDVE IL DA +V LF
Sbjct: 233 VVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAKQVA--LF 290
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSARSQVIPDIIR 358
SAT+P+ ++ I+ ++L +D + + K K +T N+R + S + + ++
Sbjct: 291 SATMPNSIRKIAQQYL-NDPTEVRV----KTKTTTGANIRQRYMQVMHSHKLDAMTRVLE 345
Query: 359 CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ G I+F TK+ ++AD L A A++GDI Q RE T+ R G+ LV
Sbjct: 346 VENYDG-IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILV 404
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 405 ATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAG 444
>gi|440731079|ref|ZP_20911124.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas translucens DAR61454]
gi|440375088|gb|ELQ11802.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas translucens DAR61454]
Length = 653
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 152/343 (44%), Positives = 197/343 (57%), Gaps = 22/343 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L G DL+G+A+TG GKT AF LPIL L R
Sbjct: 28 GYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSRLDFN----------QRK 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y A+ G +YGG PY Q LK+G+ VV+GTPG
Sbjct: 78 PQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSALKRGVHVVVGTPG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS L+ VLDEADEMLRMGF++DVE +L K+ + +V LFSAT+P+
Sbjct: 138 RVIDHLERGTLDLSELRTLVLDEADEMLRMGFIDDVEAVLKKLPASRQVA--LFSATMPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+K I+ +L + I K S N+R S + + I+
Sbjct: 196 AIKRIAQTYLNDPAEVII---ASKTTTSANIRQRYWAVSGLHKLDALTRILEVEPFDA-M 251
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK + +LA L A A++GDIQQSQRE + + GK LVAT+VAARG
Sbjct: 252 IVFARTKAATDELAQKLQARGLAAAAINGDIQQSQRERVIQQLKDGKLDILVATDVAARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS 465
LD+ + ++ + P D E+Y+HR GRTGRAG + E I VS
Sbjct: 312 LDVERISHVLNYDIPYDTESYVHRIGRTGRAG-RSGEAILFVS 353
>gi|380512805|ref|ZP_09856212.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas sacchari NCPPB 4393]
Length = 480
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 152/343 (44%), Positives = 196/343 (57%), Gaps = 22/343 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L G DL+G+A+TG GKT AF LPIL L R
Sbjct: 8 GYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSRLDFA----------QRK 57
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y A+ G +YGG PY Q LK+G+ VV+GTPG
Sbjct: 58 PQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSALKRGVHVVVGTPG 117
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH++RG +DLS LK VLDEADEMLRMGF++DVE +L K+ ++ +V LFSAT+P
Sbjct: 118 RVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPESRQVA--LFSATMPP 175
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+K I+ +L + I K S N+R S + + I+
Sbjct: 176 AIKRIAQTYLNDPAEVII---ASKTTTSANIRQRYWAVSGLHKLDALTRILEVEPFDA-M 231
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK +LA L A A++GDIQQ+QRE + + GK LVAT+VAARG
Sbjct: 232 IIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDVLVATDVAARG 291
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS 465
LD+ + ++ + P D E+Y+HR GRTGRAG + E I VS
Sbjct: 292 LDVERISHVLNYDIPYDTESYVHRIGRTGRAG-RSGEAILFVS 333
>gi|383808644|ref|ZP_09964182.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Rothia aeria F0474]
gi|383448538|gb|EID51497.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Rothia aeria F0474]
Length = 699
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 146/338 (43%), Positives = 203/338 (60%), Gaps = 19/338 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G E PIQ T ++LDG D+VG A+TG GKT AF LP L + + + G
Sbjct: 113 LEEVGYEKPSPIQEQTIPLLLDGKDVVGLAQTGTGKTAAFALPALSRMA----ELADING 168
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R VLVL PTRELA QV E F Y + T +YGG+PY Q L++G VV+
Sbjct: 169 VSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQVVV 228
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ +G++DLS+L++ VLDEADEMLRMGF EDVE IL DA +V LFSA
Sbjct: 229 GTPGRVIDHLNKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAKQVA--LFSA 286
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSARSQVIPDIIRCY 360
T+PS ++ I+ ++L +D + + K K +T N+R + + S + + ++
Sbjct: 287 TMPSSIRKIAQQYL-NDPTEVRV----KTKTTTGANIRQRYMQVTHSHKLDAMTRVLEVE 341
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+ G I+F TK+ ++AD L A A++GDI Q RE T+ R G+ LVAT
Sbjct: 342 NYDG-IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVAT 400
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 401 DVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAG 438
>gi|285018817|ref|YP_003376528.1| ATP-dependent RNA helicase (cold-shock dead box protein)
[Xanthomonas albilineans GPE PC73]
gi|283474035|emb|CBA16536.1| probable atp-dependent rna helicase (cold-shock dead box protein)
[Xanthomonas albilineans GPE PC73]
Length = 657
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 152/343 (44%), Positives = 196/343 (57%), Gaps = 22/343 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L G DL+G+A+TG GKT AF LPIL L R
Sbjct: 28 GYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSRLDFA----------QRK 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y A+ G +YGG PY Q LK+G+ VV+GTPG
Sbjct: 78 PQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSALKRGVHVVVGTPG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH++RG +DLS LK VLDEADEMLRMGF++DVE +L K+ + +V LFSAT+P+
Sbjct: 138 RVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPQSRQVA--LFSATMPA 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+K I+ +L + I K S N+R S + + I+
Sbjct: 196 AIKRIAQTYLNDPAEVII---ASKTTTSANIRQRYWAVSGLHKLDALTRILEVEPFDA-M 251
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK +LA L A A++GDIQQ+QRE + + GK LVAT+VAARG
Sbjct: 252 IIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDILVATDVAARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS 465
LD+ + ++ + P D E+Y+HR GRTGRAG + E I VS
Sbjct: 312 LDVERISHVLNYDIPYDTESYVHRIGRTGRAG-RSGEAILFVS 353
>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
Length = 598
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 156/356 (43%), Positives = 209/356 (58%), Gaps = 26/356 (7%)
Query: 108 PNAVSRF---RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
P + RF R+ L + L G ES IQ+MT +LDG DLVG+A+TG GKT AF
Sbjct: 4 PEELGRFDELRLPDFLLKALADVGYESPSAIQSMTIPPLLDGHDLVGQAQTGTGKTAAFA 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYG 223
LP+L L TKA P LVL PTRELA QV E F Y + G +YG
Sbjct: 64 LPVLARLD---TKAG-------GPQALVLTPTRELAIQVAEAFQKYARYSKGFKVVPIYG 113
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G+ Y Q +L++G+ +++GTPGR+ DH+ RG++DLSSLK VLDEADEMLRMGF++DVE
Sbjct: 114 GSDYRTQLRQLQRGVHIIVGTPGRVMDHMRRGSLDLSSLKTLVLDEADEMLRMGFIDDVE 173
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
IL + Q LFSAT+P ++ I+ L+S + ++ K + ++R V
Sbjct: 174 WILEQTPATR--QIALFSATMPDAIRRIAKTHLQSPQ---EITIKRKTVTNASIRQRVWI 228
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQR 398
+ + + I+ G IIF T+ + +LAD L AR AL+GDI Q+QR
Sbjct: 229 MAGVQKLDALTRILETEDYDG-VIIFVRTRIATQELADKL-AARGFATAALNGDIAQNQR 286
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+ F+ G+ LVAT+VAARGLD++ V +I + P D EAYIHR GRTGRAG
Sbjct: 287 EKTVDSFKRGQLDLLVATDVAARGLDVDRVSHVINYDIPNDPEAYIHRIGRTGRAG 342
>gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
43183]
Length = 565
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 222/381 (58%), Gaps = 27/381 (7%)
Query: 110 AVSRFR---ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP 166
A++ FR + + + L+S+GI FPIQ M + L G D++G+ARTG GKTLAF +P
Sbjct: 24 ALTTFRELGVCSEIADALESEGIVDAFPIQEMALPIGLRGYDIIGQARTGTGKTLAFGIP 83
Query: 167 ILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226
+L+ + +G G+AP LVL PTRELA QV +D V GG +G +YGG
Sbjct: 84 LLQRIEHG----------GKAPRGLVLAPTRELASQVTDDLLVAGGKLGTRVVAVYGGRA 133
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
Y Q L+ G+DVV+GTPGR+ D +G++DLS ++ VLDEAD ML +GF+ D+E I+
Sbjct: 134 YEPQIQALRDGVDVVVGTPGRLLDLARQGHLDLSQIQMLVLDEADRMLDLGFLPDIERII 193
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346
V + QT+LFSAT+P + +S ++L V E +A+ V V
Sbjct: 194 ELV--PAERQTMLFSATMPGEIVALSRRYLNRPTNVRAEVHTES-EATPQVTQHVFQTHP 250
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402
+ +V+ +++ + G T++F +TK + ++A L A A+HGD+ Q QRE L
Sbjct: 251 MDKPEVLARLLQA-NGRGLTMVFCQTKRACDRIAADLTRRGFAAAAVHGDLGQGQRERAL 309
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETIT 462
FRSGK LVAT+VAARGLD+ DV +I E P E ++HR GRTGRAG E +T
Sbjct: 310 RAFRSGKVDVLVATDVAARGLDVEDVTHVINYECPDSAETHVHRIGRTGRAGREGT-AVT 368
Query: 463 QVSDSVIPAFKSAAEELLNNS 483
V S +P +K L+NN+
Sbjct: 369 LVDWSDLPRWK-----LINNA 384
>gi|410860280|ref|YP_006975514.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
gi|410817542|gb|AFV84159.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
Length = 586
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 148/341 (43%), Positives = 205/341 (60%), Gaps = 21/341 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L+ G E PIQA + ++L+G DL+G+A+TG GKT AF LP+L ++ P +
Sbjct: 17 PILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI--DPEQ- 73
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKG 237
R P +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G
Sbjct: 74 -------RKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKRG 126
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGRI DHI+R +DLS LK+ VLDEADEMLRMGF++DVELIL + QT
Sbjct: 127 VQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEER--QT 184
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P +K I+ ++LK D K + + K+ ++ +R + + + + I+
Sbjct: 185 ALFSATMPGPIKKITQRYLK-DPKHVKIAS--KVSTASTIRQRYCQIAPHHKLEALTRIM 241
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G IIF TK + +LAD L L+GDI QS RE T+ + G+ L
Sbjct: 242 EVEAFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQSARERTVEKLKQGQIDIL 300
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG
Sbjct: 301 VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAG 341
>gi|407686365|ref|YP_006801538.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407289745|gb|AFT94057.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
Length = 596
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 149/341 (43%), Positives = 204/341 (59%), Gaps = 21/341 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L+ G E PIQA + ++L+G DL+G+A+TG GKT AF LP+L ++ P +
Sbjct: 17 PILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI--DPEQ- 73
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKG 237
R P +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G
Sbjct: 74 -------RKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKRG 126
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGRI DHI+R +DLS LKF VLDEADEMLRMGF++DVELIL + QT
Sbjct: 127 VQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEER--QT 184
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P +K I+ ++LK D K + + K+ ++ +R + + + + I+
Sbjct: 185 ALFSATMPGPIKKITQRYLK-DPKHVKIAS--KVSTASTIRQRYCQIAPHHKLEALTRIM 241
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G IIF TK + +LAD L L+GDI Q+ RE T+ + GK L
Sbjct: 242 EVEVFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDIL 300
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG
Sbjct: 301 VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAG 341
>gi|406595506|ref|YP_006746636.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407682465|ref|YP_006797639.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
gi|406372827|gb|AFS36082.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407244076|gb|AFT73262.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
Length = 596
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 149/341 (43%), Positives = 204/341 (59%), Gaps = 21/341 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L+ G E PIQA + ++L+G DL+G+A+TG GKT AF LP+L ++ P +
Sbjct: 17 PILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI--DPEE- 73
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKG 237
R P +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G
Sbjct: 74 -------RKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKRG 126
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGRI DHI+R +DLS LKF VLDEADEMLRMGF++DVELIL + QT
Sbjct: 127 VQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEER--QT 184
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P +K I+ ++LK D K + + K+ ++ +R + + + + I+
Sbjct: 185 ALFSATMPGPIKKITQRYLK-DPKHVKIAS--KVSTASTIRQRYCQIAPHHKLEALTRIM 241
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G IIF TK + +LAD L L+GDI Q+ RE T+ + GK L
Sbjct: 242 EVEVFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDIL 300
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG
Sbjct: 301 VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAG 341
>gi|352093689|ref|ZP_08954860.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
gi|351680029|gb|EHA63161.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
Length = 602
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 148/356 (41%), Positives = 211/356 (59%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
E E P+ S F S L + L KG + PIQ ++ G DLVG+A+TG GKT AF
Sbjct: 43 EPEAPSGFSEFGFSEALLKTLADKGYKEPSPIQKEAIPELMLGRDLVGQAQTGTGKTAAF 102
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLY 222
LP+LE L G PSVLVL PTRELA QV E F Y G L +Y
Sbjct: 103 ALPLLERLQ----------GDSPLPSVLVLAPTRELAMQVAEAFKAYSAGHPHLNVLAIY 152
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG+ + +Q L++G+DVV+GTPGR+ DH+ +G ++ S L+ VLDEADEMLRMGF++DV
Sbjct: 153 GGSDFRSQINALRRGVDVVVGTPGRVMDHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDV 212
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E IL ++ + +V +LFSAT+P+ ++ +S ++L ++ ++ K K + +RH +
Sbjct: 213 EWILEQLPEERQV--VLFSATMPNEIRRLSKRYL---REPAEITIKTKEKEARRIRHRCI 267
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQR 398
+S + + + ++ + G IIF TK +A+ L A L+GD+ Q+QR
Sbjct: 268 TMQNSHKLEALNRVLEAVTGEG-VIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQR 326
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+ R G LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG
Sbjct: 327 ERTVERLRKGTVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAG 382
>gi|395237134|ref|ZP_10415233.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|423351003|ref|ZP_17328655.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
gi|394487633|emb|CCI83321.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|404387055|gb|EJZ82184.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
Length = 704
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 212/368 (57%), Gaps = 22/368 (5%)
Query: 92 EPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
E G E +E GE E P S IS + +K G PIQA T +++ G D+VG
Sbjct: 83 EAAQGDEARESGEDEGPGFES-LGISEEMLAAVKKAGFTKPSPIQAETIPLLMAGRDVVG 141
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211
A+TG GKT AF LP+L SK R P LVL PTRELA QV + F +
Sbjct: 142 LAQTGTGKTAAFALPVL----------SKVDLKARTPQALVLAPTRELAAQVADSFQEFA 191
Query: 212 GAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
G + GL +YGG Y Q L++G +++GTPGRI DH++RG++D+S LK+ VLDEA
Sbjct: 192 GDLKGLEVLPVYGGQSYGFQLSGLRRGAQIIVGTPGRIIDHLKRGSLDISELKYLVLDEA 251
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML MGF EDVE IL +A +V LFSAT+P+ ++ IS ++L ++ + + EK
Sbjct: 252 DEMLNMGFQEDVERILEDTPEAKQV--ALFSATMPAGIRKISQQYL-TNPAEVTVKTREK 308
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----A 386
+ R I +P + Q + I+ G I+F TK ++AD L A
Sbjct: 309 TNTNITQRWIFVPHRD--KLQALVRILEVTDVDG-MIVFVRTKSETEEVADALRAAGFSA 365
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A++GDI Q+QRE T+ +SG+ LVAT+VAARGLD+ + ++ + PR+ E+Y+HR
Sbjct: 366 AAINGDIAQAQRERTVEQLKSGRLDILVATDVAARGLDVERISHVVNFDIPREAESYVHR 425
Query: 447 SGRTGRAG 454
GRTGRAG
Sbjct: 426 IGRTGRAG 433
>gi|221482484|gb|EEE20832.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
Length = 1295
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 238/795 (29%), Positives = 366/795 (46%), Gaps = 190/795 (23%)
Query: 10 KEVKDEKKMNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSETSS 69
+E +D + KK + EE +A ++S + +++ + +K +E +EE +ET
Sbjct: 416 REREDVSEEAKKKRAETGEERDA---QRSKNLSETQTRSMKRKEQEDRTAKEERFAETPD 472
Query: 70 ELGEPVNLK-SEKEKKKKKKAKVEPEAGVEEQERGE---SEHPNAVSRFRISVPLREKLK 125
E GE + L E+E+ ++K A A G+ S HP +IS E L+
Sbjct: 473 EDGETLTLLFPEEEEARQKTAVAAAAARAVAATTGKLFSSLHP------KISTATVEALR 526
Query: 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE--------------SL 171
++GI ++ PIQ+ +++++ +G D+V R+ TG GKT+ F LP++E
Sbjct: 527 ARGITTMTPIQSESYEVLFEGRDVVARSETGSGKTIGFALPLMERERREMEKDFSRDSPA 586
Query: 172 TNGPTKA---SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
+G + A S+ +G+ P +L+L PTRELA+QV ++ + G ++ L+S C+YGG P
Sbjct: 587 EDGNSSANDTSRDSGFYEQPRLLILEPTRELARQVAQEVERLGESLDLSSFCVYGGVPME 646
Query: 229 AQ---------------------------EFKLKKG-----IDVVIGTPGRIKD------ 250
+Q E +L+K +DV+I TPGR+ D
Sbjct: 647 SQLRQLRREKQRTAGRLLSPGTPDGASSSEKRLRKQAASGRLDVLIATPGRLLDLMGLNE 706
Query: 251 --HIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV-EDANKVQTLLFSATLPSW 307
+ +IDLSS++ VLDEADEML++GF DVE IL KV E+ VQ +LFSAT P W
Sbjct: 707 GRETPQRDIDLSSVRRVVLDEADEMLKLGFAADVERILQKVKENPFNVQLILFSATTPGW 766
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSSSARSQV------------- 352
V+ ++ L+ + ID++ K++ ST V H+ LP + + S +
Sbjct: 767 VQDVAGTHLR-NPTNIDILAERKLRTSTTVSHLAVRLPSLTPSASALPRSSSSGRGSSSA 825
Query: 353 -------IPDIIRCYSSGGR-TIIFTETKESASQLADLLP----GARALHGDIQQSQREV 400
+ D+I S G+ I+F TK A LA+ GA LHGDI Q R+
Sbjct: 826 VAAAAPLLQDLILAESENGKQAIVFVPTKADADALANAADFERVGASVLHGDIGQETRQA 885
Query: 401 TLAGFRSGK-------------------------FMTLVATNVAARGLDINDVQLIIQCE 435
+ GFR GK + L+AT+VAARG+D++ V L++ C
Sbjct: 886 VMEGFRRGKSPFGELLLSQACFALNASGLPLESRYKVLIATDVAARGIDVDSVDLVLHCG 945
Query: 436 PPRDVEAYIHRSGRTGRAG----------------------------------------- 454
P D + YIHRSGRTGRAG
Sbjct: 946 VPTDADTYIHRSGRTGRAGRAGKSLVLVSPQETADLERLERACGFKFSFIHLPSPNAILK 1005
Query: 455 ---VEAAETITQVSDSVIPAFKSAAEELL---NNSGLSAAELLAKALAKAVGYTEIKSRS 508
A+ + +S SV+P F+ AAE++L N G+SA +++A+ALA A + RS
Sbjct: 1006 SGAATASRLLDSISPSVLPFFRPAAEDVLRRGNLHGVSAVDIVARALAAAANMKALPQRS 1065
Query: 509 LLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEE-KVELVKGM----ALTADGNGAVF 563
LL+ + +TV+ + + S R + E+ VEL + AD A F
Sbjct: 1066 LLTGMAAQLTVLFANRRREWKSSNDVYYWIRVVAEDLGVELPPTLGDIRRSAADRRAAYF 1125
Query: 564 DVPVADLDLF------RSGADNAANVSLEVLKQL--PPLQEREQSRGRFGGGGRGGFGGR 615
D+PV F R+ A++A V + +QL P + E R G F GR
Sbjct: 1126 DLPVEIGSAFVKAFRTRASAEHAGEVRMTKAEQLVTPLVTESPDKR------GVSQFFGR 1179
Query: 616 GGNRFSGGRGGGFSD 630
+R R GG SD
Sbjct: 1180 SASRTGRYRYGGDSD 1194
>gi|221504525|gb|EEE30198.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
Length = 1279
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 236/766 (30%), Positives = 352/766 (45%), Gaps = 189/766 (24%)
Query: 41 KKKSKKKESSKKRKESE--IEEEEERSETSSELGEPVNLK-SEKEKKKKKKAKVEPEAGV 97
K S+ + S KRKE E +EE +ET E GE + L E+E+ ++K A A
Sbjct: 426 KNLSETQTRSMKRKEQEDRTAKEERFAETPDEDGETLTLLFPEEEEARQKTAVAAAAARA 485
Query: 98 EEQERGE---SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRAR 154
G+ S HP +IS E L+++GI ++ PIQ+ +++++ +G D+V R+
Sbjct: 486 VAATTGKLFSSLHP------KISTATVEALRARGITTMTPIQSESYEVLFEGRDVVARSE 539
Query: 155 TGQGKTLAFVLPILE--------------SLTNGPTKA---SKKTGYGRAPSVLVLLPTR 197
TG GKT+ F LP++E +G + A S+ +G+ P +L+L PTR
Sbjct: 540 TGSGKTIGFALPLMERERREMEKDFSRDSPAEDGNSSANDTSRDSGFYEQPRLLILEPTR 599
Query: 198 ELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ--------------------------- 230
ELA+QV ++ + G ++ L+S C+YGG P +Q
Sbjct: 600 ELARQVAQEVERLGESLDLSSFCVYGGVPMESQLRQLRREKQRTAGRLLSPGTPDGASSS 659
Query: 231 EFKLKKG-----IDVVIGTPGRIKD--------HIERGNIDLSSLKFRVLDEADEMLRMG 277
E +L+K +DV+I TPGR+ D + +IDLSS++ VLDEADEML++G
Sbjct: 660 EKRLRKQAASGRLDVLIATPGRLLDLMGLNEGRETPQRDIDLSSVRRVVLDEADEMLKLG 719
Query: 278 FVEDVELILGKV-EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
F DVE IL KV E+ VQ +LFSAT P WV+ ++ L+ + ID++ K++ ST
Sbjct: 720 FAADVERILQKVKENPFNVQLILFSATTPGWVQDVAGTHLR-NPTNIDILAERKLRTSTT 778
Query: 337 VRHIV--LPCSSSARSQV--------------------IPDIIRCYSSGGR-TIIFTETK 373
V H+ LP + + S + + D+I S G+ I+F TK
Sbjct: 779 VSHLAVRLPSLTPSASALPRSSSSGRGSSSAVAAAAPLLQDLILAESENGKQAIVFVPTK 838
Query: 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK-------------------- 409
A LA+ GA LHGDI Q R+ + GFR GK
Sbjct: 839 ADADALANAADFERVGASVLHGDIGQETRQAVMEGFRRGKSPFGELLLSQACFALNASSL 898
Query: 410 -----FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG---------- 454
+ L+AT+VAARG+D++ V L++ C P D + YIHRSGRTGRAG
Sbjct: 899 PLESRYKVLIATDVAARGIDVDSVDLVLHCGVPTDADTYIHRSGRTGRAGRAGKSLVLVS 958
Query: 455 ----------------------------------VEAAETITQVSDSVIPAFKSAAEELL 480
A+ + +S SV+P F+ AAE++L
Sbjct: 959 PQETADLERLERACGFKFSFIHLPSPNAILKSGAATASRLLDSISPSVLPFFRPAAEDVL 1018
Query: 481 ---NNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
N G+SA +++A+ALA A + RSLL+ + +TV+ + + S
Sbjct: 1019 RRGNLHGVSAVDIVARALAAAANMKALPQRSLLTGMAAQLTVLFANRRREWKSSNDVYYW 1078
Query: 538 RRFLPEE-KVELVKGM----ALTADGNGAVFDVPVADLDLF------RSGADNAANVSLE 586
R + E+ VEL + AD A FD+PV F R+ A++A V +
Sbjct: 1079 IRVVAEDLGVELPPTLGDIRRSAADRRAAYFDLPVEIGSAFVKAFRTRASAEHAGEVRMT 1138
Query: 587 VLKQL--PPLQEREQSRGRFGGGGRGGFGGRGGNRFSGGRGGGFSD 630
+QL P + E R G F GR +R R GG SD
Sbjct: 1139 KAEQLVTPLVTESPDKR------GVSQFFGRSASRTGRYRYGGDSD 1178
>gi|407698821|ref|YP_006823608.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Black Sea
11']
gi|407247968|gb|AFT77153.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Black Sea
11']
Length = 608
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 149/341 (43%), Positives = 203/341 (59%), Gaps = 21/341 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L+ G E PIQA + ++L G DL+G+A+TG GKT AF LP+L ++ P +
Sbjct: 17 PILQALEKVGYEKPSPIQAESIPLLLKGHDLLGQAQTGTGKTAAFALPMLANI--DPEQ- 73
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKG 237
R P +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G
Sbjct: 74 -------RKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKRG 126
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGRI DHI+R +DLS LKF VLDEADEMLRMGF++DVELIL + QT
Sbjct: 127 VQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEER--QT 184
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P +K I+ ++LK D K + + K+ ++ +R + + + + I+
Sbjct: 185 ALFSATMPGPIKKITQRYLK-DPKHVKIAS--KVSTASTIRQRYCQIAPHHKLEALTRIM 241
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G IIF TK + +LAD L L+GDI Q+ RE T+ + GK L
Sbjct: 242 EVEVFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDIL 300
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG
Sbjct: 301 VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAG 341
>gi|384428616|ref|YP_005637976.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
gi|341937719|gb|AEL07858.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
Length = 642
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 151/356 (42%), Positives = 205/356 (57%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G E+ PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPE--KRQVALFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ V ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|289663283|ref|ZP_06484864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
NCPPB 702]
Length = 640
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 152/356 (42%), Positives = 204/356 (57%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSGAVMKAVTNVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQLK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPE--KRQVALFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ V ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|66767801|ref|YP_242563.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|188990915|ref|YP_001902925.1| cold-shock DEAD-box protein A [Xanthomonas campestris pv.
campestris str. B100]
gi|66573133|gb|AAY48543.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|167732675|emb|CAP50869.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
campestris]
Length = 642
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 151/356 (42%), Positives = 205/356 (57%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G E+ PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPE--KRQVALFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ V ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|21232073|ref|NP_637990.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|21113816|gb|AAM41914.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
Length = 642
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 151/356 (42%), Positives = 205/356 (57%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G E+ PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPE--KRQVALFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ V ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
Length = 719
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 160/401 (39%), Positives = 228/401 (56%), Gaps = 24/401 (5%)
Query: 66 ETSSELGE-PVNLKSEKEKKKKKKAKVEPEAGVEEQERGESE-HPNAVSRFR---ISVPL 120
E+S E GE P N K++ + + + + A + E E H +RF + +
Sbjct: 80 ESSLETGEKPANEKADAAESMTAEPREDNAATKKNTEDNTHESHEEEGTRFTDLGLDPRV 139
Query: 121 REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180
L+ G E PIQ T +LDG+D+VG A+TG GKT AF LP L + + +
Sbjct: 140 LSALEEVGYEKPSPIQEQTIPPLLDGNDVVGLAQTGTGKTAAFALPALSRMA----ELAD 195
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGID 239
G R VLVL PTRELA QV E F Y + T +YGG+PY Q L++G
Sbjct: 196 INGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQ 255
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ DH+E+G++DLS+L++ VLDEADEMLRMGF EDVE IL DA +V L
Sbjct: 256 VVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAKQV--AL 313
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSARSQVIPDII 357
FSAT+P+ ++ I+ ++L +D + + K K +T N+R + S + + ++
Sbjct: 314 FSATMPNSIRKIAQQYL-NDPTEVRV----KTKTTTGANIRQRYMQVMHSHKLDAMTRVL 368
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G I+F TK+ ++AD L A A++GDI Q RE T+ R G+ L
Sbjct: 369 EVENYDG-IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDIL 427
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 428 VATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAG 468
>gi|428182996|gb|EKX51855.1| hypothetical protein GUITHDRAFT_102470 [Guillardia theta CCMP2712]
Length = 589
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 173/485 (35%), Positives = 246/485 (50%), Gaps = 87/485 (17%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
+++ FRIS + L +GI++LFPIQ TFD++ +G DL+ RARTG GKTLAFVLP+
Sbjct: 137 SSIRNFRISEKTIKALSEQGIQTLFPIQVATFDIIYEGYDLIARARTGTGKTLAFVLPVH 196
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
E L + + + GRAP LV++PTREL QV + GG++ + S +YGGAP
Sbjct: 197 EKLMRSRGQINSR---GRAPEALVMVPTRELCLQVTRVWKSLGGSLEIQS--VYGGAPIR 251
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL-- 286
Q+ L GIDVVIGTPGRI D RG++ L +KF VLDEAD+ML +GF +D+E I+
Sbjct: 252 QQQIALSDGIDVVIGTPGRILDLKSRGSLRLDRIKFLVLDEADQMLEIGFKDDMEEIIRS 311
Query: 287 --GKVEDAN-KVQTLLFSATLPSWVKHISTKFLKSDK-KTIDLVGNEKMKASTNVRHIVL 342
G + +N QTLLFSAT+PSWV+ I+ +L++D+ K +DL V+H
Sbjct: 312 VCGDAQASNLDHQTLLFSATVPSWVQEIARNYLRADRRKDVDL-----------VKH--- 357
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTL 402
ET ++A ++ + + +
Sbjct: 358 ----------------------------ETLKTAPKI------------------KHLCI 371
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETIT 462
A S + T+VATNVAARGLDI +V L++ C PP E Y+HRSGRTGRAG + +
Sbjct: 372 ACGVSARRSTIVATNVAARGLDIPEVDLVVMCHPPESSELYVHRSGRTGRAG-KNGTCVM 430
Query: 463 QVSDSVIPAFKSAAEELLNNS------------GLSAAELLAKALAKAVGYTEIKSRSLL 510
S P + + S A E + + +RS+L
Sbjct: 431 FYSPREAPDLSRIEHKTASCSQPHAAAKAACEDAFIAMEKVQPESIQLFSTLPPSARSML 490
Query: 511 SSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEE--KVELVKGMALTADGNGAVFDVPVA 568
+SLE T +L++ P F +RR + E + V+ + D +GA FDVP
Sbjct: 491 TSLEGFKTFLLKSSGISMVPD-VFRCIRRVMGGEPKAADSVRSIRFLKDKSGAAFDVPAE 549
Query: 569 DLDLF 573
LF
Sbjct: 550 FAALF 554
>gi|357418161|ref|YP_004931181.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
gi|355335739|gb|AER57140.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
Length = 646
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 147/344 (42%), Positives = 200/344 (58%), Gaps = 21/344 (6%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L + G ES PIQA T +L G D++G A+TG GKT AF LP+L +L
Sbjct: 17 LSAPVMAALATVGYESPSPIQAATIPALLAGRDVLGTAQTGTGKTAAFALPVLSNLDLAA 76
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
K P LVL PTRELA QV E F Y ++ G +YGG Y Q L
Sbjct: 77 GK----------PQALVLAPTRELAIQVAEAFQKYAASIPGFHVLPIYGGQAYAPQLQAL 126
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K+G+ VV+GTPGR+ DH+ERG++DLS L VLDEADEMLRMGF++DVE +L K + +
Sbjct: 127 KRGVHVVVGTPGRVIDHLERGSLDLSGLATLVLDEADEMLRMGFIDDVETVLKKTPETRQ 186
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
V LFSAT+P ++ I+ +LK D +++ A+ R+ + S + +
Sbjct: 187 VA--LFSATMPPAIRRIAQTYLK-DPVEVNIAARTTTSANITQRYWFV--SGLHKLDALT 241
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I+ G IIF TK + +LA L A A++GD+QQ+ RE T+A + GK
Sbjct: 242 RILEAEPFDG-MIIFVRTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKL 300
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD+ V ++ + P D E+Y+HR GRTGRAG
Sbjct: 301 DILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAG 344
>gi|283457475|ref|YP_003362053.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
gi|283133468|dbj|BAI64233.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
Length = 732
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 144/340 (42%), Positives = 204/340 (60%), Gaps = 15/340 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G E PIQ T ++L+G D+VG A+TG GKT AF LP L + + + G
Sbjct: 76 LEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSRMA----ELADING 131
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R VLVL PTRELA QV E F Y + T +YGG+PY Q L++G VV+
Sbjct: 132 VSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQVVV 191
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G++DLS+L++ VLDEADEMLRMGF EDVE IL D+ +V LFSA
Sbjct: 192 GTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQVA--LFSA 249
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ ++L +D + + + K S+N+ + S + + ++ +
Sbjct: 250 TMPNSIRKIAQQYL-NDPREVRV--KAKTTTSSNISQRYMQVMHSHKLDAMTRVLEVENY 306
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK+ ++AD L A A++GDI Q RE T+ R G+ LVAT+V
Sbjct: 307 DG-IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDV 365
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458
AARGLD+ + L++ + P D E+Y+HR GRTGRAG E A
Sbjct: 366 AARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGA 405
>gi|418516368|ref|ZP_13082542.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|418519674|ref|ZP_13085726.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410705118|gb|EKQ63597.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410706907|gb|EKQ65363.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 632
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 205/356 (57%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|422324246|ref|ZP_16405283.1| hypothetical protein HMPREF0737_00393 [Rothia mucilaginosa M508]
gi|353344302|gb|EHB88614.1| hypothetical protein HMPREF0737_00393 [Rothia mucilaginosa M508]
Length = 752
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 144/340 (42%), Positives = 201/340 (59%), Gaps = 15/340 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G E PIQ T ++LDG D+VG A+TG GKT AF LP L + + + G
Sbjct: 95 LEEVGYEKPSPIQEQTIPLLLDGHDVVGLAQTGTGKTAAFALPALSRMA----ELADING 150
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R VLVL PTRELA QV E F Y + T +YGG+PY Q L++G VV+
Sbjct: 151 VSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQVVV 210
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G++DLS+L++ VLDEADEMLRMGF EDVE IL D+ +V LFSA
Sbjct: 211 GTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQVA--LFSA 268
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ ++L +++ K S N+ + S + + ++ +
Sbjct: 269 TMPNSIRKIAQQYLND---PVEVRVKAKTTTSANISQRYMQVMHSHKLDAMTRVLEVENY 325
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK+ ++AD L A A++GDI Q RE T+ R G+ LVAT+V
Sbjct: 326 DG-IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDV 384
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458
AARGLD+ + L++ + P D E+Y+HR GRTGRAG E A
Sbjct: 385 AARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGA 424
>gi|325920710|ref|ZP_08182616.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
gi|325548762|gb|EGD19710.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
Length = 643
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 152/356 (42%), Positives = 204/356 (57%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQLK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPE--KRQVALFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ V ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|21243540|ref|NP_643122.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
gi|21109105|gb|AAM37658.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
Length = 632
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 205/356 (57%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|390991391|ref|ZP_10261657.1| DEAD/DEAH box helicase family protein [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|372553884|emb|CCF68632.1| DEAD/DEAH box helicase family protein [Xanthomonas axonopodis pv.
punicae str. LMG 859]
Length = 632
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 205/356 (57%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|58581173|ref|YP_200189.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84623095|ref|YP_450467.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|58425767|gb|AAW74804.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84367035|dbj|BAE68193.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 634
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 151/356 (42%), Positives = 202/356 (56%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSGAVMRAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P ++ I+ +LK + I K S N+R
Sbjct: 174 EAVLKKLPE--KRQVALFSATMPPAIRRIAQTYLKDPAEVIIAA---KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|325918892|ref|ZP_08180966.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
35937]
gi|325534878|gb|EGD06800.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
35937]
Length = 636
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 152/356 (42%), Positives = 204/356 (57%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQLK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPE--KRQVALFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ V ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 589
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 148/341 (43%), Positives = 204/341 (59%), Gaps = 21/341 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L+ G E PIQA + ++L+G DL+G+A+TG GKT AF LP+L ++ P +
Sbjct: 17 PILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI--DPEQ- 73
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKG 237
R P +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G
Sbjct: 74 -------RKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKRG 126
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGRI DHI+R +DLS LK+ VLDEADEMLRMGF++DVELIL + QT
Sbjct: 127 VQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEER--QT 184
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P +K I+ ++LK D K + + K+ ++ +R + + + + I+
Sbjct: 185 ALFSATMPGPIKKITQRYLK-DPKHVKIAS--KVSTASTIRQRYCQIAPHHKLEALTRIM 241
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G IIF TK + +LAD L L+GDI Q+ RE T+ + GK L
Sbjct: 242 EVEVFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDIL 300
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG
Sbjct: 301 VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAG 341
>gi|188575689|ref|YP_001912618.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188520141|gb|ACD58086.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 614
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 147/332 (44%), Positives = 193/332 (58%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L G D++G+A+TG GKT AF LP+L + K
Sbjct: 8 GYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSNADLNQVK---------- 57
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y A+ G +YGG PY Q LK+G+ VV+GTPG
Sbjct: 58 PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGTPG 117
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH++RG +DLS LK VLDEADEMLRMGF++DVE +L K+ + K Q LFSAT+P
Sbjct: 118 RVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPE--KRQVALFSATMPP 175
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +LK + I K S N+R S + + I+ G
Sbjct: 176 AIRRIAQTYLKDPAEVIIAA---KTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDG-M 231
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK +LA L A A++GD+QQ+ RE T+A + GK LVAT+VAARG
Sbjct: 232 IIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARG 291
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 292 LDVERISHVLNYDIPYDTESYVHRIGRTGRAG 323
>gi|325928505|ref|ZP_08189695.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
gi|325541118|gb|EGD12670.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
Length = 537
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 205/356 (57%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLHQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|405982153|ref|ZP_11040477.1| hypothetical protein HMPREF9240_01483 [Actinomyces neuii BVS029A5]
gi|404390944|gb|EJZ86010.1| hypothetical protein HMPREF9240_01483 [Actinomyces neuii BVS029A5]
Length = 515
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 149/378 (39%), Positives = 216/378 (57%), Gaps = 10/378 (2%)
Query: 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP 166
H + F +S + + L +GI FPIQA+T + L G+D++G+A+TG GKTL F +P
Sbjct: 34 HKKTFADFGVSASICQALAEEGITHPFPIQALTLPVALKGNDIIGQAKTGTGKTLGFGIP 93
Query: 167 ILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226
LE + +K P L++LPTRELAKQV D V + +YGG
Sbjct: 94 ALEQIVGPQEDGYEKLLNAGCPQALIILPTRELAKQVARDLKVAAKNRSVRITQIYGGVA 153
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
+ Q L+KG D+V+GTPGR+ D ++ G + LS +K VLDEADEML +GF+ DVE +L
Sbjct: 154 FEPQLKALEKGTDLVVGTPGRLIDLLKHGKLKLSGVKVVVLDEADEMLDLGFLPDVETLL 213
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN-VRHIVLPCS 345
+ T+LFSAT+P V ++ +++ S I A+ N V+ +V C
Sbjct: 214 SRTPAGR--HTMLFSATMPGEVIALARRYM-SHPTHIRAQDPADQNATVNSVKQVVYRCH 270
Query: 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVT 401
+ + +V+ I++ G +IIFT TK +A++LAD L A ALHGD+ Q RE
Sbjct: 271 AMNKLEVVSRILQAKGR-GLSIIFTRTKRTAARLADDLSDRGFAAAALHGDLGQGAREQA 329
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETI 461
+ FR GK LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG + I
Sbjct: 330 MRAFRKGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYLHRIGRTGRAGA-SGTAI 388
Query: 462 TQVSDSVIPAFKSAAEEL 479
T V +P +K ++ L
Sbjct: 389 TFVDWDDVPRWKLISKAL 406
>gi|149177361|ref|ZP_01855966.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797]
gi|148843886|gb|EDL58244.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797]
Length = 606
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 150/352 (42%), Positives = 207/352 (58%), Gaps = 22/352 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L G ++ PIQA T +L+G DLVG+A+TG GKT AF LP+L
Sbjct: 19 PILDVLVELGYDTPTPIQAQTIPHLLEGRDLVGQAQTGTGKTAAFALPLL---------- 68
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
SK RAP VLVL PTRELA QV E F YG + GL +YGGA + Q LK+G
Sbjct: 69 SKIDLELRAPQVLVLAPTRELAIQVGESFKEYGSQLKGLQVLPIYGGADFKGQLQPLKRG 128
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGR+ DH+ RG + L +L+ VLDEADEMLRMGF++DVE IL + D + QT
Sbjct: 129 VHVVVGTPGRVMDHMRRGTLKLDNLRCLVLDEADEMLRMGFIDDVEWILEQTPDNH--QT 186
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P ++ I+ +LKS + ++ +K + + +R + + I+
Sbjct: 187 ALFSATMPEAIRRIAGNYLKSPQ---EITVKDKTRTADTIRQRYWLAKGHHKLDALTRIL 243
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G IIF TK ++L++ L A L+GDI Q QRE T+ ++G +
Sbjct: 244 EAEETDG-VIIFVRTKSITTELSEKLEARGFLAAPLNGDIPQKQRERTVGRLKAGHVNIV 302
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS 465
+AT+VAARGLD++ + +I + P D EAY+HR GRTGRAG E I VS
Sbjct: 303 IATDVAARGLDVDRISHVINYDLPGDSEAYVHRIGRTGRAG-RTGEAIMFVS 353
>gi|294625117|ref|ZP_06703762.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292600581|gb|EFF44673.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 648
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 205/356 (57%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 20 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 79
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 80 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 129
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 130 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 189
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 190 EAVLKKLPEQRQVA--LFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 244
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 245 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 303
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 304 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 359
>gi|346725640|ref|YP_004852309.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
F1]
gi|346650387|gb|AEO43011.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
F1]
Length = 632
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 205/356 (57%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLHQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|381172244|ref|ZP_09881376.1| DEAD/DEAH box helicase family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380687289|emb|CCG37863.1| DEAD/DEAH box helicase family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 612
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/332 (43%), Positives = 195/332 (58%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L G D++G+A+TG GKT AF LP+L + K
Sbjct: 8 GYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSNADLNQVK---------- 57
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y A+ G +YGG PY Q LK+G+ VV+GTPG
Sbjct: 58 PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGTPG 117
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH++RG +DLS LK VLDEADEMLRMGF++DVE +L K+ + +V LFSAT+P
Sbjct: 118 RVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVA--LFSATMPP 175
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +LK D + + K S N+R S + + I+ G
Sbjct: 176 AIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDG-M 231
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA L A A++GD+QQ+ RE T+A + GK LVAT+VAARG
Sbjct: 232 IIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARG 291
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 292 LDVERISHVLNYDIPYDTESYVHRIGRTGRAG 323
>gi|323358213|ref|YP_004224609.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
gi|323274584|dbj|BAJ74729.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
Length = 585
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 145/336 (43%), Positives = 200/336 (59%), Gaps = 21/336 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E+ IQA T ++L G D+VG A+TG GKT AF LP+L + +TG
Sbjct: 34 LKDVGYETPSAIQAATIPVLLQGRDVVGLAQTGTGKTAAFALPVLSQM---------ETG 84
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
+ + P LVL PTRELA QV E F+ Y + G++ +YGG Y Q L++G+DV++
Sbjct: 85 H-KNPQALVLAPTRELALQVCEAFEKYAAHIKGVSVLPVYGGQGYGQQLSALRRGVDVIV 143
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+++G +DLS LKF VLDEADEML+MGF EDVE IL +V LFSA
Sbjct: 144 GTPGRIMDHLDKGTLDLSELKFLVLDEADEMLKMGFAEDVETILADTPSTKQVA--LFSA 201
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ IS ++L + ++ K S N+ L S + + I+ +
Sbjct: 202 TMPAQIRRISAQYLNDPE---EITVKTKTTTSANITQRYLIVSYQQKIDALTRILEVENF 258
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+FT TK +A+ L A A++GDI Q QRE T+ +SGK LVAT+V
Sbjct: 259 EG-MIVFTRTKNETETVAEKLRARGYTAAAINGDIAQVQRERTVNQLKSGKLDILVATDV 317
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 318 AARGLDVERISHVVNYDLPIDTESYVHRIGRTGRAG 353
>gi|294665477|ref|ZP_06730761.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292604731|gb|EFF48098.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 648
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 205/356 (57%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 20 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 79
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 80 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 129
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 130 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 189
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 190 EAVLKKLPEQRQVA--LFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 244
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 245 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 303
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 304 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 359
>gi|308178183|ref|YP_003917589.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
gi|307745646|emb|CBT76618.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
Re117]
Length = 642
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/341 (42%), Positives = 200/341 (58%), Gaps = 25/341 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-----TNGPTKA 178
L G E PIQA T ++L+G D+VG A+TG GKT AF LP L + TNGP K
Sbjct: 35 LADLGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPALSRMAELADTNGPAKT 94
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
P +LVL PTRELA QV E F Y + T +YGG+PY Q L++G
Sbjct: 95 ---------PQILVLAPTRELALQVAEAFTSYAKYLPNFTVLPVYGGSPYGPQLNGLRRG 145
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DHI +G++DLS+L++ VLDEADEMLRMGF E+V+ IL + +V
Sbjct: 146 AQVVVGTPGRVIDHINKGSLDLSNLQYVVLDEADEMLRMGFAEEVDKILEATPEDKQVA- 204
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P ++ I++++L++ + ++ K TN+ L + + + I+
Sbjct: 205 -LFSATMPRTIRRIASEYLRNPQ---EVAVKSKQSTGTNITQRYLQVMGAHKLDAMTRIL 260
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G I F TK + LAD L A A++GDI Q QRE T+ RSGK L
Sbjct: 261 ESETFEG-VIAFVRTKMATEDLADKLKARGFTAAAINGDIPQQQRERTIENLRSGKIDIL 319
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 320 VATDVAARGLDVERISHVVNFDIPHDTESYVHRIGRTGRAG 360
>gi|408824960|ref|ZP_11209850.1| DEAD/DEAH box helicase [Pseudomonas geniculata N1]
Length = 648
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 207/356 (58%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+S+ P ++ +S P+ + + + G E+ PIQA T +L+G D++G+A+TG GKT AF
Sbjct: 4 DSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L ++ K P L+L PTRELA QV E F Y + G +Y
Sbjct: 64 ALPVLSNIDLQQIK----------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q L++G+ +V+GTPGR+ DH++R +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +L+ +++ K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPQIRRIAQTYLQD---PVEVTIAAKTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ IIF TK +LA L A A++GD+QQ+QR
Sbjct: 229 WVSGMHKLDALTRILEVEPFDA-MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 ERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|84498694|ref|ZP_00997447.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
gi|84381031|gb|EAP96918.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
Length = 601
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 210/373 (56%), Gaps = 23/373 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E+ PIQA T +L G +VG A+TG GKT AF LPIL L +KT
Sbjct: 36 LKDVGYETPSPIQAATIPALLAGRHVVGLAQTGTGKTAAFALPILSRL-----DLKQKT- 89
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F+ Y + G+ +YGG Y Q L++G+ +V+
Sbjct: 90 ----PQALVLAPTRELALQVCEAFEKYASRMPGVHVLPVYGGQAYGVQLSALRRGVHIVV 145
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+E+G +DLS L+F VLDEADEML+MGF EDVE IL V LFSA
Sbjct: 146 GTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPAEKHVA--LFSA 203
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+PS ++ IS K+L +++ + + N+ L CS + + I+ +
Sbjct: 204 TMPSQIRRISKKYLTD---ALEITVERTTETAPNITQRYLFCSYPQKIDALTRILEVENF 260
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK LA+ L A A++GDI Q+QRE T+A +SGK LVAT+V
Sbjct: 261 EG-MIVFVRTKNETEMLAEKLRARGFSATAINGDIAQNQRERTVAQLKSGKLDILVATDV 319
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV--EAAETITQVSDSVIPAFKSAA 476
AARGLD+ + ++ + P D E+Y+HR GRTGRAG +A +T ++ A + A
Sbjct: 320 AARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPREKYLLKAIEKAT 379
Query: 477 EELLNNSGLSAAE 489
+ L L + E
Sbjct: 380 KTTLTEMQLPSVE 392
>gi|311111789|ref|YP_003983011.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
gi|310943283|gb|ADP39577.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
Length = 580
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/353 (40%), Positives = 201/353 (56%), Gaps = 7/353 (1%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P + + F + + + L + GI S FPIQ MT + L G D++G+A+TG GKTL F LP
Sbjct: 22 PKSFADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPT 81
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
++ + AP L+L+PTRELA QV D V LYGG PY
Sbjct: 82 IQRVVGRDDDQWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPY 141
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q +L KG++VV+GTPGR+ D + G + L+ +K VLDEADEML +GF+ VE I+G
Sbjct: 142 EPQVEQLTKGLEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMG 201
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+ QT+LFSAT+P V ++ K++ + K ++R +V
Sbjct: 202 YL--PTDRQTMLFSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHM 259
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403
+ +++ I+R + GRT+IFT+TK A+++AD L A LHGD+ Q RE L
Sbjct: 260 DKDEMLGRILRAHGR-GRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALR 318
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
FR+GK LVAT+VAARG+D+ DV +I P D + Y+HR+GRTGRAG E
Sbjct: 319 AFRNGKVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHE 371
>gi|300741894|ref|ZP_07071915.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
gi|300381079|gb|EFJ77641.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
Length = 582
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/353 (40%), Positives = 201/353 (56%), Gaps = 7/353 (1%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P + + F + + + L + GI S FPIQ MT + L G D++G+A+TG GKTL F LP
Sbjct: 22 PKSFADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPT 81
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
++ + AP L+L+PTRELA QV D V LYGG PY
Sbjct: 82 IQRVVGRDDDQWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPY 141
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q +L KG++VV+GTPGR+ D + G + L+ +K VLDEADEML +GF+ VE I+G
Sbjct: 142 EPQVEQLTKGLEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMG 201
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+ QT+LFSAT+P V ++ K++ + K ++R +V
Sbjct: 202 YL--PTDRQTMLFSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHM 259
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403
+ +++ I+R + GRT+IFT+TK A+++AD L A LHGD+ Q RE L
Sbjct: 260 DKDEMLGRILRAHGR-GRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALR 318
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
FR+GK LVAT+VAARG+D+ DV +I P D + Y+HR+GRTGRAG E
Sbjct: 319 AFRNGKVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHE 371
>gi|386717711|ref|YP_006184037.1| cold-shock DEAD-box protein A [Stenotrophomonas maltophilia D457]
gi|384077273|emb|CCH11859.1| Cold-shock DEAD-box protein A [Stenotrophomonas maltophilia D457]
Length = 651
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 207/356 (58%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+S+ P ++ +S P+ + + + G E+ PIQA T +L+G D++G+A+TG GKT AF
Sbjct: 10 DSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAF 69
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L ++ K P L+L PTRELA QV E F Y + G +Y
Sbjct: 70 ALPVLSNIDLQQIK----------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVY 119
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q L++G+ +V+GTPGR+ DH++R +DLS LK VLDEADEMLRMGF++DV
Sbjct: 120 GGQPYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDV 179
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +L+ +++ K S N+R
Sbjct: 180 EAVLKKLPEQRQVA--LFSATMPPQIRRIAQTYLQD---PVEVTIAAKTTTSANIRQRYW 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ IIF TK +LA L A A++GD+QQ+QR
Sbjct: 235 WVSGMHKLDALTRILEVEPFDA-MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 294 ERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 349
>gi|395760255|ref|ZP_10440924.1| cold-shock DeaD box ATP-dependent RNA helicase (partial match)
[Janthinobacterium lividum PAMC 25724]
Length = 716
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/348 (43%), Positives = 204/348 (58%), Gaps = 21/348 (6%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S +S PL LK G E+ PIQA T ++L D++G+A+TG GKT AF LPIL +
Sbjct: 10 SDLNLSEPLIRALKDVGYETPSPIQAATIPLLLANRDVLGQAQTGTGKTAAFALPILSRI 69
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQ 230
K S +P LVL PTRELA QV E F VY + G +YGG Y Q
Sbjct: 70 D---LKQS-------SPQALVLAPTRELAIQVAEAFQVYAAHIPGFHVLPIYGGQSYGPQ 119
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L++G+ V++GTPGR+ DH+++G++DLS LK VLDEADEMLRMGF++DVE IL +
Sbjct: 120 LSALRRGVHVIVGTPGRVIDHLDKGSLDLSKLKTLVLDEADEMLRMGFIDDVERILQETP 179
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+ + QT LFSAT+PS +K I+T +L + ++ K + N+R S +
Sbjct: 180 EGH--QTALFSATMPSVIKRIATTYLINPA---EVTVAAKTGTADNIRQRYWLVSGMHKL 234
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFR 406
+ I+ + G IIF TK +LA L A A++GDIQQ+QRE T+ +
Sbjct: 235 DALTRILEAEAFDG-MIIFARTKLGTEELAGKLQARGFSAAAINGDIQQAQRERTIQQLK 293
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
GK LVAT+VAARGLD+ + ++ + P D E+Y HR GRTGRAG
Sbjct: 294 DGKIDILVATDVAARGLDVERISHVVNYDVPHDPESYTHRIGRTGRAG 341
>gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
Length = 744
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 145/340 (42%), Positives = 202/340 (59%), Gaps = 15/340 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G E PIQ T ++L+G D+VG A+TG GKT AF LP L + + + G
Sbjct: 81 LEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSRMA----ELADVNG 136
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R VLVL PTRELA QV E F Y + T +YGG+PY Q L++G VV+
Sbjct: 137 ISRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQVVV 196
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G++DLS+L++ VLDEADEMLRMGF EDVE IL D+ +V LFSA
Sbjct: 197 GTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQVA--LFSA 254
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ ++L +D I + K S N+ + S + + ++ +
Sbjct: 255 TMPNSIRKIAQQYL-NDPTEIRV--KAKTTTSANISQRYMQVMHSHKLDAMTRVLEVENY 311
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK+ ++AD L A A++GDI Q RE T+ R G+ LVAT+V
Sbjct: 312 DG-IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDV 370
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458
AARGLD+ + L++ + P D E+Y+HR GRTGRAG E A
Sbjct: 371 AARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGA 410
>gi|424667727|ref|ZP_18104752.1| hypothetical protein A1OC_01305 [Stenotrophomonas maltophilia
Ab55555]
gi|401067989|gb|EJP76513.1| hypothetical protein A1OC_01305 [Stenotrophomonas maltophilia
Ab55555]
Length = 648
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 207/356 (58%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+S+ P ++ +S P+ + + + G E+ PIQA T +L+G D++G+A+TG GKT AF
Sbjct: 4 DSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L ++ K P L+L PTRELA QV E F Y + G +Y
Sbjct: 64 ALPVLSNIDLQQIK----------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q L++G+ +V+GTPGR+ DH++R +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +L+ +++ K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPQIRRIAQTYLQD---PVEVTIAAKTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ IIF TK +LA L A A++GD+QQ+QR
Sbjct: 229 WVSGMHKLDALTRILEVEPFDA-MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 ERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|190573462|ref|YP_001971307.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia K279a]
gi|190011384|emb|CAQ44999.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
Length = 654
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 207/356 (58%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+S+ P ++ +S P+ + + + G E+ PIQA T +L+G D++G+A+TG GKT AF
Sbjct: 4 DSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L ++ K P L+L PTRELA QV E F Y + G +Y
Sbjct: 64 ALPVLSNIDLQQIK----------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q L++G+ +V+GTPGR+ DH++R +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +L+ +++ K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPQIRRIAQTYLQD---PVEVTIAAKTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ IIF TK +LA L A A++GD+QQ+QR
Sbjct: 229 WVSGMHKLDALTRILEVEPFDA-MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 ERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|254521627|ref|ZP_05133682.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
gi|219719218|gb|EED37743.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
Length = 648
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 207/356 (58%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+S+ P ++ +S P+ + + + G E+ PIQA T +L+G D++G+A+TG GKT AF
Sbjct: 4 DSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L ++ K P L+L PTRELA QV E F Y + G +Y
Sbjct: 64 ALPVLSNIDLQQIK----------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q L++G+ +V+GTPGR+ DH++R +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +L+ +++ K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPQIRRIAQTYLQD---PVEVTIAAKTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ IIF TK +LA L A A++GD+QQ+QR
Sbjct: 229 WVSGMHKLDALTRILEVEPFDA-MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 ERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|344206631|ref|YP_004791772.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia JV3]
gi|343777993|gb|AEM50546.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
JV3]
Length = 648
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 207/356 (58%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+S+ P ++ +S P+ + + + G E+ PIQA T +L+G D++G+A+TG GKT AF
Sbjct: 4 DSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L ++ K P L+L PTRELA QV E F Y + G +Y
Sbjct: 64 ALPVLSNIDLQQIK----------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q L++G+ +V+GTPGR+ DH++R +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +L+ +++ K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPQIRRIAQTYLQD---PVEVTIAAKTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ IIF TK +LA L A A++GD+QQ+QR
Sbjct: 229 WVSGMHKLDALTRILEVEPFDA-MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 ERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|400975652|ref|ZP_10802883.1| ATP-dependent helicase [Salinibacterium sp. PAMC 21357]
Length = 783
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 158/387 (40%), Positives = 224/387 (57%), Gaps = 26/387 (6%)
Query: 123 KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182
+L S G ES FPIQA T VL G D++GR +TG GKT+AF P++E L K
Sbjct: 412 QLASMGAESPFPIQAATIPDVLAGKDVLGRGKTGSGKTIAFGAPLVERLME--NNGGKDR 469
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
GR P L+L PTRELA+Q+ +VGL + + GG P + Q L +G+DV+I
Sbjct: 470 QMGRKPRALILAPTRELAQQIDRTIQPIARSVGLFTTTIVGGVPQYKQVAALTRGVDVII 529
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
TPGRI+D IE+G +DLS +K VLDEAD M +GF+E V+ IL + + Q LLFSA
Sbjct: 530 ATPGRIEDLIEQGRLDLSQVKVTVLDEADHMCDLGFLEPVQRILRETSEGG--QKLLFSA 587
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
TL V + +FL D ++ G + +AS+ + H VL + II+ S+
Sbjct: 588 TLDKGVATLVKEFL-VDPAVHEVAGED--QASSTIDHKVLLIEQRDKRA----IIKQLSA 640
Query: 363 G-GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
G G+T++FT T+ A ++A+ L A +LHGD+ QS+R L SGK LVAT+
Sbjct: 641 GTGKTLVFTRTRAFAEEMAEFLSMGGTPATSLHGDLNQSRRTRNLQMLTSGKVNVLVATD 700
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAE 477
VAARG+ ++D+ L+IQ + P + + Y+HRSGRTGRAG +A +T +IP +
Sbjct: 701 VAARGIHVDDISLVIQADAPEEYKTYLHRSGRTGRAG-KAGTVVT-----LIPRNRRRKM 754
Query: 478 ELLNNSGLSAAELLAKALAKAVGYTEI 504
+ L L AE+ A+++ A G T I
Sbjct: 755 DEL----LGRAEIDAESVDVAPGDTFI 777
>gi|289668227|ref|ZP_06489302.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 640
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 152/356 (42%), Positives = 203/356 (57%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 4 ESSAPLLFADLGLSGAVMKAVANVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 64 ALPVLSNADLNQLK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P + I+ +LK D + + K S N+R
Sbjct: 174 EAVLKKLPE--KRQVALFSATMPPAICRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK +LA L A A++GD+QQ+ R
Sbjct: 229 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ V ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 EKTIAQLKDGKLDILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|456733812|gb|EMF58634.1| Cold-shock DEAD-box protein A [Stenotrophomonas maltophilia EPM1]
Length = 648
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 207/356 (58%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+S+ P ++ +S P+ + + + G E+ PIQA T +L+G D++G+A+TG GKT AF
Sbjct: 4 DSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAF 63
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L ++ K P L+L PTRELA QV E F Y + G +Y
Sbjct: 64 ALPVLSNIDLQQIK----------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q L++G+ +V+GTPGR+ DH++R +DLS LK VLDEADEMLRMGF++DV
Sbjct: 114 GGQPYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + +V LFSAT+P ++ I+ +L+ +++ K S N+R
Sbjct: 174 EAVLKKLPEQRQVA--LFSATMPPQIRRIAQTYLQD---PVEVTIAAKTTTSANIRQRYW 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ IIF TK +LA L A A++GD+QQ+QR
Sbjct: 229 WVSGMHKLDALTRILEVEPFDA-MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 288 ERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|237841471|ref|XP_002370033.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
gi|211967697|gb|EEB02893.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
Length = 1258
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 235/766 (30%), Positives = 351/766 (45%), Gaps = 189/766 (24%)
Query: 41 KKKSKKKESSKKRKESE--IEEEEERSETSSELGEPVNLK-SEKEKKKKKKAKVEPEAGV 97
K S+ + S KRKE E +E+ ET E GE + L E+E+ ++K A A
Sbjct: 423 KNLSETQTRSMKRKEQEDRTAKEQRFGETPDEDGETLTLLFPEEEEARQKTAVAAAAARA 482
Query: 98 EEQERGE---SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRAR 154
G+ S HP +IS E L+++GI ++ PIQ+ +++++ +G D+V R+
Sbjct: 483 VAATTGKLFSSLHP------KISTATVEALRARGITTMTPIQSESYEVLFEGRDVVARSE 536
Query: 155 TGQGKTLAFVLPILE--------------SLTNGPTKA---SKKTGYGRAPSVLVLLPTR 197
TG GKT+ F LP++E +G + A S+ +G+ P +L+L PTR
Sbjct: 537 TGSGKTIGFALPLMERERREMEKDFSRDSPAEDGNSSANDTSRDSGFYEQPRLLILEPTR 596
Query: 198 ELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ--------------------------- 230
ELA+QV ++ + G ++ L+S C+YGG P +Q
Sbjct: 597 ELARQVAQEVERLGESLDLSSFCVYGGVPMESQLRQLRREKQRTAGRLLSPGTPDGASSS 656
Query: 231 EFKLKKG-----IDVVIGTPGRIKD--------HIERGNIDLSSLKFRVLDEADEMLRMG 277
E +L+K +DV+I TPGR+ D + +IDLSS++ VLDEADEML++G
Sbjct: 657 EKRLRKQAASGRLDVLIATPGRLLDLMGLNEGRETPQRDIDLSSVRRVVLDEADEMLKLG 716
Query: 278 FVEDVELILGKV-EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
F DVE IL KV E+ VQ +LFSAT P WV+ ++ L+ + ID++ K++ ST
Sbjct: 717 FAADVERILQKVKENPFNVQLILFSATTPGWVQDVAGTHLR-NPTNIDILAERKLRTSTT 775
Query: 337 VRHIV--LPCSSSARSQV--------------------IPDIIRCYSSGGR-TIIFTETK 373
V H+ LP + + S + + D+I S G+ I+F TK
Sbjct: 776 VSHLAVRLPSLTPSASALPRSSSSGRGSSSAVAAAAPLLQDLILAESENGKQAIVFVPTK 835
Query: 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK-------------------- 409
A LA+ GA LHGDI Q R+ + GFR GK
Sbjct: 836 ADADALANAADFERVGASVLHGDIGQETRQAVMEGFRRGKSPFGELLLSQACFALNASGL 895
Query: 410 -----FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG---------- 454
+ L+AT+VAARG+D++ V L++ C P D + YIHRSGRTGRAG
Sbjct: 896 PLESRYKVLIATDVAARGIDVDSVDLVLHCGVPTDADTYIHRSGRTGRAGRAGKSLVLVS 955
Query: 455 ----------------------------------VEAAETITQVSDSVIPAFKSAAEELL 480
A+ + +S SV+P F+ AAE++L
Sbjct: 956 PQETADLERLERACGFKFSFIHLPSPNAILKSGAATASRLLDSISPSVLPFFRPAAEDVL 1015
Query: 481 ---NNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 537
N G+SA +++A+ALA A + RSLL+ + +TV+ + + S
Sbjct: 1016 RRGNLHGVSAVDIVARALAAAANMKALPQRSLLTGMAAQLTVLFANRRREWKSSNDVYYW 1075
Query: 538 RRFLPEE-KVELVKGM----ALTADGNGAVFDVPVADLDLF------RSGADNAANVSLE 586
R + E+ VEL + AD A FD+PV F R+ A++A V +
Sbjct: 1076 IRVVAEDLGVELPPTLGDIRRSAADRRAAYFDLPVEIGSAFVKAFRTRASAEHAGEVRMT 1135
Query: 587 VLKQL--PPLQEREQSRGRFGGGGRGGFGGRGGNRFSGGRGGGFSD 630
+QL P + E R G F GR +R R GG SD
Sbjct: 1136 KAEQLVTPLVTESPDKR------GVSQFFGRSASRTGRYRYGGDSD 1175
>gi|113954045|ref|YP_730263.1| superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
gi|113881396|gb|ABI46354.1| Superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
Length = 601
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/356 (41%), Positives = 210/356 (58%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
E + P+ S F S L + L KG + PIQ ++ G DLVG+A+TG GKT AF
Sbjct: 43 EPKVPSGFSEFGFSEALLKTLADKGYKEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAF 102
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLY 222
LP+LE L G PSVLVL PTRELA QV E F Y G L +Y
Sbjct: 103 ALPLLERLQ----------GDSPLPSVLVLAPTRELAMQVAEAFKAYSAGHPHLNVLAIY 152
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG+ + +Q L++G+DVV+GTPGR+ DH+ +G ++ S L+ VLDEADEMLRMGF++DV
Sbjct: 153 GGSDFRSQINALRRGVDVVVGTPGRVMDHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDV 212
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E IL ++ + Q +LFSAT+P+ ++ +S ++L ++ ++ K K + +RH +
Sbjct: 213 EWILEQL--PQERQVVLFSATMPNEIRRLSKRYL---REPAEITIKTKDKEARRIRHRCI 267
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQR 398
+S + + + ++ + G IIF TK +A+ L A L+GD+ Q+QR
Sbjct: 268 TMQNSHKLEALNRVLEAVTGEG-VIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQR 326
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+ R G LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG
Sbjct: 327 ERTVERLRKGTVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAG 382
>gi|392953714|ref|ZP_10319268.1| putative cold-shock DeaD box ATP-dependent RNA helicase
[Hydrocarboniphaga effusa AP103]
gi|391859229|gb|EIT69758.1| putative cold-shock DeaD box ATP-dependent RNA helicase
[Hydrocarboniphaga effusa AP103]
Length = 611
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 144/347 (41%), Positives = 206/347 (59%), Gaps = 23/347 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+++ P+ E L G ES PIQA T +L+G D++G+A+TG GKT AF LPIL L
Sbjct: 21 LQLAAPVLEALSRVGYESPSPIQARTIPPLLEGRDVLGQAQTGTGKTAAFALPILSKLD- 79
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEF 232
K S +P L+L PTRELA QV E Y + G +YGG Y Q
Sbjct: 80 --LKQS-------SPQALILAPTRELAIQVAEALQTYAACMPGFHVLPIYGGQSYEPQLR 130
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
LK+G VV+GTPGR+ DHI+RG++ L L+ VLDEADEMLRMGF+EDVE +L +
Sbjct: 131 GLKRGAHVVVGTPGRVVDHIKRGSLKLEGLRHFVLDEADEMLRMGFIEDVEWVLQQA--P 188
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ Q LFSAT+PS ++ ++T +L ++ +++ K +TN+R S + +
Sbjct: 189 AERQIALFSATMPSQIRRVATTYL---REPVEISIKAKTTTATNIRQRYWMVSGMNKIEA 245
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGFRS 407
+ + + I+F TK + ++LAD L GAR AL+GD+QQ+ RE T+A +
Sbjct: 246 LTRFLEAETFDA-MIVFARTKAATTELADKL-GARGFSAAALNGDMQQNDRERTIAKLKD 303
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G+ +VAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 304 GQLDIVVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAG 350
>gi|12652909|gb|AAH00210.1| DDX50 protein, partial [Homo sapiens]
Length = 467
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 156/399 (39%), Positives = 220/399 (55%), Gaps = 54/399 (13%)
Query: 249 KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLP 305
KDH++ G +DLS L+ VLDE D+ML +GF E VE I+ K + + QTLLFSAT P
Sbjct: 1 KDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCP 60
Query: 306 SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGG 364
WV ++ K++KS + +DLVG KA+T V H+ + C S R VI D+++ YS S G
Sbjct: 61 QWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEG 120
Query: 365 RTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
R IIF ETK++ +++A + A+ LHGDI QSQRE+TL GFR G F LVATNVAAR
Sbjct: 121 RAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAAR 180
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG--------------------------- 454
GLDI +V L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 181 GLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGIT 240
Query: 455 -----------------VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAK 497
++A ++ VS + + F+ +A+ L+ G A + LA ALA
Sbjct: 241 FKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKG--AVDALAAALAH 298
Query: 498 AVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD 557
G + + RSL++S + VT+ LE+ + I S A+ L R L V + M L
Sbjct: 299 ISGASSFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKG 358
Query: 558 GNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 596
G FDVP + + ++ ++ + L V +LP ++E
Sbjct: 359 NMGVCFDVPTTESERLQAEWHDSDWI-LSVPAKLPEIEE 396
>gi|425733846|ref|ZP_18852166.1| DNA/RNA helicase [Brevibacterium casei S18]
gi|425482286|gb|EKU49443.1| DNA/RNA helicase [Brevibacterium casei S18]
Length = 503
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/346 (42%), Positives = 208/346 (60%), Gaps = 12/346 (3%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L + GI FPIQAMT + L G+D++G+A+TG GKTL F +P+L+ +T G
Sbjct: 13 VSGPIVASLAAAGITHPFPIQAMTLPVALSGADIIGQAKTGTGKTLGFGIPLLQRVT-GK 71
Query: 176 TKASKKTGYG--RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+ +T G R P LV++PTRELAKQV +D + +YGG + Q
Sbjct: 72 DEPGGETAEGDTRLPQALVVVPTRELAKQVAQDLVTASSQRSIDVVTIYGGKEFEPQINA 131
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
LK G+DVV+GTPGR+ D R + L+ ++ VLDEADEML +GF+ DVE I+ V AN
Sbjct: 132 LKAGVDVVVGTPGRLLDLYGRKVLRLNKVRTVVLDEADEMLDLGFLPDVERIIAAVP-AN 190
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS-TNVRHIVLPCSSSARSQV 352
+ QT+LFSAT+P V ++ +++ I NE + + N V + +S++
Sbjct: 191 R-QTMLFSATMPGAVITLARRYMNRPTH-IRAHDNEDLSLTGKNTTQYVYRAHAMDKSEL 248
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ +++ GRTIIFT TK +A +LA L RALHGD+ Q+QRE L FR G
Sbjct: 249 VARLLQAEGR-GRTIIFTRTKRTADKLAAELSDRGFAVRALHGDLGQAQREKALKSFRDG 307
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARG+DI+DV ++ + P D + Y+HR GRTGRAG
Sbjct: 308 TVDVLVATDVAARGIDIDDVTHVVNFQSPEDEKTYVHRIGRTGRAG 353
>gi|427391479|ref|ZP_18885885.1| hypothetical protein HMPREF9233_01388 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425732122|gb|EKU94934.1| hypothetical protein HMPREF9233_01388 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 567
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 145/351 (41%), Positives = 206/351 (58%), Gaps = 17/351 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F +S + L +GI FPIQA+T + LD D++G+A+TG GKTL F +P+LE+ T
Sbjct: 35 FGVSEEVTRALADEGIIHPFPIQALTLPVALDRHDIIGQAKTGTGKTLGFGIPMLEN-TI 93
Query: 174 GPTK------ASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
GP + K G P L +LPTRELAKQV + + + +YGG Y
Sbjct: 94 GPGEEGWEKIPEKNQGL---PQGLAILPTRELAKQVANELRMAAAHRSVRIVDIYGGRAY 150
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q+ L++G ++V+GTPGRI D + G++ L +K VLDEADEML +GF+EDVE IL
Sbjct: 151 EPQQEALRRGAEIVVGTPGRIIDLMRHGSLRLDHVKTLVLDEADEMLDLGFLEDVETILS 210
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+V + + T+LFSAT+P V ++ +++ + N+R IV +
Sbjct: 211 RVPE--RRHTMLFSATMPGPVISMARRYMSKPTHIRASAPGDDTHTVKNIRQIVYRAHAL 268
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403
+ +VI I++ GRT+IFT TK SA++LA+ L ALHGD+ Q RE L
Sbjct: 269 NKDEVIARILQARGR-GRTLIFTRTKRSAARLAEDLERRGFATGALHGDLGQGAREQALH 327
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
FR+GK LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG
Sbjct: 328 AFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAG 378
>gi|78048530|ref|YP_364705.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78036960|emb|CAJ24661.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 648
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 204/356 (57%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 20 ESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 79
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 80 ALPVLSNADLHQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 129
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 130 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 189
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + Q LFSAT+P ++ I+ +LK D + + K S N+R
Sbjct: 190 EAVLKKL--PAQRQVALFSATMPPAIRRIAQTYLK-DPAEVTIAA--KTTTSANIRQRYW 244
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
S + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 245 WVSGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 303
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 304 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 359
>gi|383810152|ref|ZP_09965659.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Rothia aeria F0474]
gi|383447091|gb|EID50081.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Rothia aeria F0474]
Length = 536
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 200/341 (58%), Gaps = 7/341 (2%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + GI + FPIQ M + L G D++ +A+TG GKTL F LP ++S+T +
Sbjct: 22 ISDALAAVGITTPFPIQTMALPVALAGHDIIAQAKTGTGKTLGFGLPTIQSVTGRDDEGW 81
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ AP L+L+PTRELA QV ED + LYGG PY Q LKKG++
Sbjct: 82 DDLEFPGAPQALILVPTRELAIQVGEDLAIASKLRNARVATLYGGVPYEPQVKLLKKGLE 141
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D +G ++L +K VLDEADEML +GF+ VE IL + + Q++L
Sbjct: 142 VVVGTPGRLIDLYNQGALNLKQVKIVVLDEADEMLDLGFLPSVEKILSYL--PAQRQSML 199
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P V ++ +++ + ++ K ++R +V + +++ I+R
Sbjct: 200 FSATMPGPVISMARRYMNKPMRMSAADPEDQAKTKASIRQVVYRVHHMDKDEMLGRILRA 259
Query: 360 YSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
GRT+IFT+TK A+++AD L A LHGD+ Q RE L FR+GK LVA
Sbjct: 260 QGR-GRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRNGKVDILVA 318
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
T+VAARG+D+ DV +I P D + Y+HR+GRTGRAG E
Sbjct: 319 TDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNE 359
>gi|333894503|ref|YP_004468378.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
gi|332994521|gb|AEF04576.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
Length = 588
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 147/346 (42%), Positives = 205/346 (59%), Gaps = 21/346 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
++ P+ + L+ G E PIQA + ++L+G DL+G+A+TG GKT AF LP+L ++
Sbjct: 12 LKLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEF 232
P + R P +LVL PTRELA QV E F VY + + +YGG Y Q
Sbjct: 70 DPEQ--------RKPQLLVLAPTRELAIQVAEAFQVYASFSHKIKVLPVYGGQSYDNQIR 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+LK+G+ VV+GTPGR+ DHI+R +DLS LKF VLDEADEMLRMGF++DVELIL
Sbjct: 122 QLKRGVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHA--P 179
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P +K I+ ++LK D K + + K+ ++ +R + + +
Sbjct: 180 AERQTALFSATMPGPIKKITQRYLK-DPKHVKIAS--KVSTASTIRQRYCQVAPHHKLEA 236
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
+ I+ G IIF TK + +LAD L L+GDI Q+ RE T+ + G
Sbjct: 237 LTRIMEVERFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVDKLKQG 295
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG
Sbjct: 296 NIDILVATDVVARGLDVERVSHVINYDVPYDSESYVHRIGRTGRAG 341
>gi|340794810|ref|YP_004760273.1| hypothetical protein CVAR_1849 [Corynebacterium variabile DSM
44702]
gi|340534720|gb|AEK37200.1| hypothetical protein CVAR_1849 [Corynebacterium variabile DSM
44702]
Length = 732
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 194/326 (59%), Gaps = 21/326 (6%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA T ++DG D+VG A+TG GKT AF LP L L R P VLVL
Sbjct: 94 PIQAATIPALMDGHDVVGLAQTGTGKTAAFALPALSRLDTTE----------RHPQVLVL 143
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA Q + F+ + +G S +YGGAPY AQ L++G V++GTPGRI DH+
Sbjct: 144 APTRELALQSADAFESFASHIGGVSILPIYGGAPYGAQLSGLRRGAQVIVGTPGRIIDHL 203
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
E+G++DLS L+F VLDEADEML MGF EDVE IL D+ +V LFSAT+PS ++ +S
Sbjct: 204 EKGSLDLSHLRFLVLDEADEMLNMGFQEDVERILADTPDSRQVA--LFSATMPSAIRRLS 261
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTET 372
++L ++ V +E+ + N+ L S + + I+ IIF T
Sbjct: 262 KQYLNDPQEYT--VKSEQ-RTGDNITQDYLMVSHRNKLDALTRILEVTEFDA-MIIFVRT 317
Query: 373 KESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K +LAD L A A++GDI Q+QRE T+ + G+ LVAT+VAARGLD++ +
Sbjct: 318 KSDTEELADKLRARGFEAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAARGLDVDRI 377
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ + PRD E+Y+HR GRTGRAG
Sbjct: 378 THVFNYDIPRDTESYVHRIGRTGRAG 403
>gi|213965889|ref|ZP_03394080.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
gi|213951467|gb|EEB62858.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
Length = 454
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 143/357 (40%), Positives = 208/357 (58%), Gaps = 14/357 (3%)
Query: 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
ES+ P V ++ + + L +GI F IQ +T + LDG+D++G+ARTG GKTL
Sbjct: 2 AESQSPTFVE-LGVAAEICDALADEGITRTFAIQELTLPLALDGTDIIGQARTGMGKTLG 60
Query: 163 FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
F +P+++ + + + + G RA ++++PTREL QV ED + L C +Y
Sbjct: 61 FGVPLIDRVFDD-ARIPEPDGTARA---IIIVPTRELCVQVGEDLARAAHSTNLRVCTIY 116
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q +L +G+D+++GTPGR+ D +R N++LS +K VLDEADEML +GF+ D+
Sbjct: 117 GGRPYEEQIEQLDRGVDIIVGTPGRLIDLYQRNNLELSGVKILVLDEADEMLDLGFLPDI 176
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E IL V D QT+LFSAT+P + ++ F+ G E+ + IV
Sbjct: 177 EKILAAVPDER--QTMLFSATMPGPILTLARTFMNRPVHIRAESGEEEATVHETTKQIVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQ 397
+ VI I++ + GRTIIF TK A+ +A+ L G R A+HGD+ Q
Sbjct: 235 QSHQMDKVSVIARILQA-NGRGRTIIFARTKRGAASVAEQL-GERGFLVTAVHGDMGQPA 292
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RE +L FR+G LVAT+VAARG+DI+DV +I + P D Y+HR GRTGRAG
Sbjct: 293 RERSLTAFRNGDVDVLVATDVAARGIDIDDVTHVINHQVPDDEMTYVHRIGRTGRAG 349
>gi|384418608|ref|YP_005627968.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353461521|gb|AEQ95800.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 650
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 148/356 (41%), Positives = 205/356 (57%), Gaps = 21/356 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + +S + + + + G ES PIQA T +L G D++G+A+TG GKT AF
Sbjct: 20 ESSAPLLFADLGLSGAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 79
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP+L + K P LVL PTRELA QV E F Y A+ G +Y
Sbjct: 80 ALPVLSNADLNQVK----------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVY 129
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG PY Q LK+G+ VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DV
Sbjct: 130 GGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDV 189
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L K+ + K Q LFSAT+P ++ I+ +LK +++ K S ++R
Sbjct: 190 EAVLKKLPE--KRQVALFSATMPPAIRRIAQTYLKD---PVEVTIAAKTTTSASIRQRYW 244
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
+ + + I+ G IIF TK + +LA L A A++GD+QQ+ R
Sbjct: 245 WVNGLHKLDALTRILEVEPFDG-MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAR 303
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E T+A + GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 304 EKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 359
>gi|184200491|ref|YP_001854698.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
gi|183580721|dbj|BAG29192.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
Length = 555
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 145/384 (37%), Positives = 219/384 (57%), Gaps = 9/384 (2%)
Query: 94 EAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
E+G + E E ++ + F + + + L + GI S FPIQAMT + L G D++G+A
Sbjct: 17 ESGAQAVEATEPVEESSFADFGVRQDIVDALAAHGITSPFPIQAMTLPIALSGQDIIGQA 76
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
+TG GKTL F +P L+ ++ AP L+++PTRELA QV D +
Sbjct: 77 KTGTGKTLGFGIPALQRAVGRDDAGWEQLAKPGAPQALIVVPTRELAVQVGSDLSIAAKT 136
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
+YGG PY +Q +L+KG++VV+GTPGR+ D + +DLS ++ VLDEADEM
Sbjct: 137 RNARVATIYGGRPYESQIAELEKGVEVVVGTPGRLIDLNRQHFLDLSHVRMVVLDEADEM 196
Query: 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
L +GF+ DVE +L V QT+LFSAT+P V ++ +++ + I ++
Sbjct: 197 LDLGFLPDVEKLLATVPAVR--QTMLFSATMPGPVVAMARRYM-TRPMHIRAAAPDEGTT 253
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARAL 389
++R ++ + +V+ I++ GR+IIFT TK +A++LAD L A L
Sbjct: 254 KKDIRQVIYRAHHLDKDEVVARILQAEGR-GRSIIFTRTKRAAAKLADELIHRGFAAAPL 312
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGD+ Q RE L FR+ K LVAT+VAARG+D+ DV +I + P D + Y+HR+GR
Sbjct: 313 HGDLGQGAREQALRAFRNSKVDVLVATDVAARGIDVEDVTHVINFQCPEDEKTYLHRTGR 372
Query: 450 TGRAGVEAAETITQVSDSVIPAFK 473
TGRAG + IT V +P ++
Sbjct: 373 TGRAGNKGT-AITFVDWDDVPRWR 395
>gi|427400888|ref|ZP_18892126.1| hypothetical protein HMPREF9710_01722 [Massilia timonae CCUG 45783]
gi|425720067|gb|EKU82993.1| hypothetical protein HMPREF9710_01722 [Massilia timonae CCUG 45783]
Length = 609
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 203/348 (58%), Gaps = 21/348 (6%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S +S P+ + LK G E+ PIQA T ++L+G D++G+A+TG GKT AF LPIL ++
Sbjct: 10 SDLNLSAPVLKALKDVGYETPSPIQAATIPLLLEGRDVLGQAQTGTGKTAAFALPILSNI 69
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQ 230
KKT AP LVL PTRELA QV E F Y + G +YGG Y Q
Sbjct: 70 D------VKKT----APQALVLAPTRELAIQVAEAFQSYAAHIKGFHVLPIYGGQSYGPQ 119
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L++G+ VV+GTPGR+ DHIE+G++DLS L VLDEADEMLRMGF++DVE IL +
Sbjct: 120 LSSLRRGVHVVVGTPGRVIDHIEKGSLDLSQLTTLVLDEADEMLRMGFIDDVEQILQQTP 179
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+ QT LFSAT+P +K I+ +L+ D + + K + N++ + +
Sbjct: 180 EGR--QTTLFSATMPPAIKRIAKTYLR-DPAEVTVAA--KTGTADNIKQRYWLVAGMHKL 234
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFR 406
+ I+ G IIF TK +LA L A A++GD+ Q QRE T+ +
Sbjct: 235 DALTRILEAEPFDG-MIIFARTKLGTEELATKLQARGFAATAINGDMAQQQRERTIEQLK 293
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+GK LVAT+VAARGLD+ + +I + P D E+Y HR GRTGRAG
Sbjct: 294 NGKIDILVATDVAARGLDVERISHVINYDVPSDPESYTHRIGRTGRAG 341
>gi|239918236|ref|YP_002957794.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
gi|239839443|gb|ACS31240.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
Length = 731
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 145/332 (43%), Positives = 196/332 (59%), Gaps = 15/332 (4%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G + PIQ T ++L G D+VG A+TG GKT AF LP L L +AS G A
Sbjct: 91 GYTAPSPIQEATIPLLLAGRDVVGLAQTGTGKTGAFALPALSRLA----EASDVNGRANA 146
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC-CLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P +L L PTRELA Q+ E FD Y +G S +YGG+PY Q L++G VV+GTPG
Sbjct: 147 PQILALAPTRELALQLAEAFDAYAKHLGDVSVLAVYGGSPYGPQLSALRRGAQVVVGTPG 206
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIERG++DLS L+ VLDEADEMLRMGF E+V+ IL A+K QT LFSAT+P
Sbjct: 207 RVIDHIERGSLDLSQLQTLVLDEADEMLRMGFAEEVDRILASTP-ASK-QTALFSATMPP 264
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS ++L S + ++ + + S +R L + + + I+ G
Sbjct: 265 AIRRISAQYLNSPE---EVAVSRQSTTSATIRQRYLQVGHQYKLEAMTRILETEDHEG-V 320
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I F T+ +LA L A A+ GDI Q QRE T+ ++G+ LVAT+VAARG
Sbjct: 321 IAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKTGRVDILVATDVAARG 380
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + +I + P+D E+Y+HR GRTGRAG
Sbjct: 381 LDVERISHVINYDIPQDAESYVHRIGRTGRAG 412
>gi|375099094|ref|ZP_09745357.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
gi|374659826|gb|EHR59704.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
Length = 552
Score = 248 bits (633), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 151/360 (41%), Positives = 206/360 (57%), Gaps = 18/360 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQA+T + L G D++G+ARTG GKTL F +P+L+ LT G
Sbjct: 38 LGDSGIERTFDIQALTLPLALRGEDVIGQARTGTGKTLGFGVPLLQRLT--------LPG 89
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QVHED G +G+ +YGG PY +Q L+ G+DVVIG
Sbjct: 90 DG-TPQALVVVPTRELCVQVHEDLTKAGKHLGVRVASIYGGRPYESQIKSLRDGVDVVIG 148
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ ++ L + VLDEADEML +GF+ D+E +L V D QT+LFSAT
Sbjct: 149 TPGRLLDLAEQRHLVLGKVSTLVLDEADEMLDLGFLPDIERVLRMVPDER--QTMLFSAT 206
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL I NE S + +++ +++
Sbjct: 207 MPGPILTLARTFLHQPTH-IRAEDNEAGAVHERTTQYAYRSHSLDKPELVAKVLQAEDR- 264
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 265 GLTMIFTRTKRTAQKVADDLAERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVA 324
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEEL 479
ARG+D++DV +I + P D + Y+HR GRTGRAG + IT V IP +K ++EL
Sbjct: 325 ARGIDVDDVTHVINYQTPEDEKTYVHRIGRTGRAG-KTGVAITLVDWDEIPRWKLISDEL 383
>gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 603
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 145/351 (41%), Positives = 211/351 (60%), Gaps = 21/351 (5%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
N F S L + LK+KG E PIQ + ++ G DL+G+A+TG GKT AF LP+L
Sbjct: 51 NGFEGFGFSEALLKTLKNKGYEEPTPIQKASIPELMLGRDLLGQAQTGTGKTAAFALPLL 110
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPY 227
E + SK+ R P VLVL PTRELA QV E F Y G + +YGG+ +
Sbjct: 111 ERIN------SKE----RNPQVLVLTPTRELAMQVAESFKAYSEGHANINILAVYGGSDF 160
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
+Q + LK+G+++++GTPGR+ DHI +G ++ SL+ VLDEADEMLRMGF++D+E IL
Sbjct: 161 RSQIYSLKRGVEIIVGTPGRVMDHIRQGTLNQDSLQCLVLDEADEMLRMGFIDDIEWILE 220
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
++ N+ Q +LFSAT+P ++ +S ++L+ D I + K K + +R + +S
Sbjct: 221 QL--PNERQMVLFSATMPPEIRKLSKRYLR-DPAEITIKA--KKKEAQLIRQHYITVQNS 275
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLA 403
+ +V+ ++ + G IIF TK +LA+ L + L+GD+ Q+ RE T+
Sbjct: 276 YKLEVLRRVLEL-NYGEGVIIFARTKAITLKLAESLEASNHNVAVLNGDVPQNLRERTVE 334
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
R G LVAT+VAARGLD+ + L+I + P D EAY+HR GRTGRAG
Sbjct: 335 RLRQGGINILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAG 385
>gi|33863354|ref|NP_894914.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9313]
gi|33640803|emb|CAE21258.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9313]
Length = 635
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/346 (41%), Positives = 206/346 (59%), Gaps = 21/346 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S PL + L KG + PIQ ++ G DLVG+A+TG GKT AF LP++E L +
Sbjct: 88 FGFSEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIERLHD 147
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEF 232
+G P VLVL PTRELA QV + F Y G L +YGGA + +Q
Sbjct: 148 ----------HGSRPQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQIN 197
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
LK+G+DVV+GTPGR+ DH+ +G +D S L+ VLDEADEMLRMGF++DVE IL ++ +
Sbjct: 198 TLKRGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLPEE 257
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
Q +LFSAT+PS ++ +S ++L + ++ + + + +R + +S + +
Sbjct: 258 R--QMVLFSATMPSEIRRLSKRYL---HEPAEITIKSRDQEARLIRQRCITLQNSHKLEA 312
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSG 408
+ ++ ++ G IIF TK +A+ L A L+GD+ Q+QRE T+ R G
Sbjct: 313 LRRVLEAFTGEG-VIIFARTKVITLTVAEALEAAGHDVAVLNGDVPQNQRERTVERLRKG 371
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG
Sbjct: 372 SVNILVATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAG 417
>gi|148272405|ref|YP_001221966.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147830335|emb|CAN01269.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 586
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 217/373 (58%), Gaps = 23/373 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E+ IQA T +L G D++G A+TG GKT AF LPIL +L S+KT
Sbjct: 33 LKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPILSNL-----DVSQKT- 86
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F+ Y G G+ +YGG Y Q L++G+ VV+
Sbjct: 87 ----PQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQLSALRRGVHVVV 142
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+++G +DLS LKF VLDEADEML+MGF EDVE IL + ++ LFSA
Sbjct: 143 GTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPKSKQIA--LFSA 200
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ IS K+L+ D + I + A+T R++++ S + + I+ +
Sbjct: 201 TMPAQIRRISGKYLQ-DPEEITVKNKTTTSANTTQRYLMV--SYPQKVDALTRILETENF 257
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK LA+ L A A+ GD+ Q+QRE T+ ++GK LVAT+V
Sbjct: 258 EG-MIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILVATDV 316
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAET--ITQVSDSVIPAFKSAA 476
AARGLD++ + ++ + P D E+Y+HR GRTGRAG A +T ++ A + A
Sbjct: 317 AARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPRERRLLTAIEKAT 376
Query: 477 EELLNNSGLSAAE 489
+ L + +AE
Sbjct: 377 RQPLTEMRMPSAE 389
>gi|88854845|ref|ZP_01129511.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
gi|88816006|gb|EAR25862.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
Length = 757
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 202/337 (59%), Gaps = 16/337 (4%)
Query: 123 KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182
+L S G ES FPIQA T VL G D++GR +TG GKT+AF P++E L K
Sbjct: 386 QLASMGAESPFPIQAATIPDVLAGKDVLGRGKTGSGKTIAFGAPLVERLME--NNGGKDR 443
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
GR P L+L PTRELA+Q+ +VGL + + GG P + Q L +G+DV+I
Sbjct: 444 QMGRKPRALILAPTRELAQQIDRTIQPIARSVGLFTTTIVGGVPQYKQVAALTRGVDVII 503
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
TPGR++D IE+G +DLS +K VLDEAD M +GF+E V+ IL + + Q LLFSA
Sbjct: 504 ATPGRVEDLIEQGRLDLSQVKVTVLDEADHMCDLGFLEPVQRILRETSEGG--QKLLFSA 561
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
TL V + +FL D ++ G + +AS+ + H VL + II+ S+
Sbjct: 562 TLDKGVATLVKEFL-VDPAVHEVAGED--QASSTIDHKVLLIEQRDKRA----IIKQLSA 614
Query: 363 G-GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
G G+T++FT T+ A ++A+ L A +LHGD+ QS+R L SGK LVAT+
Sbjct: 615 GTGKTLVFTRTRAFAEEMAEFLSMGGTPATSLHGDLNQSRRTRNLQMLTSGKVNVLVATD 674
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAARG+ ++D+ L+IQ + P + + Y+HR+GRTGRAG
Sbjct: 675 VAARGIHVDDISLVIQADAPEEYKTYLHRAGRTGRAG 711
>gi|254482185|ref|ZP_05095426.1| DbpA RNA binding domain family protein [marine gamma
proteobacterium HTCC2148]
gi|214037510|gb|EEB78176.1| DbpA RNA binding domain family protein [marine gamma
proteobacterium HTCC2148]
Length = 618
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/355 (41%), Positives = 209/355 (58%), Gaps = 24/355 (6%)
Query: 110 AVSRFR---ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP 166
AVS F +S PL++ L G E+ IQA T +++G D++G+A+TG GKT AF LP
Sbjct: 6 AVSSFAELALSEPLQKALADVGYETPSAIQAATIPALIEGRDVLGQAQTGTGKTAAFALP 65
Query: 167 ILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGA 225
IL L +AS K P VLVL PTRELA QV E F Y + +YGGA
Sbjct: 66 ILAQL-----QASSKK-----PQVLVLAPTRELAIQVAEAFQKYARYLKDFHVVPIYGGA 115
Query: 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285
Y Q +L++G+ VV+GTPGR+ DH+ RG++DLS+L+ VLDEADEMLRMGF++DVE I
Sbjct: 116 DYRGQLRQLQRGVQVVVGTPGRVMDHMRRGSLDLSALRTLVLDEADEMLRMGFIDDVEWI 175
Query: 286 LGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
L + D Q LFSAT+P+ + I+ + L + + + + + ++R V +
Sbjct: 176 LEQTPDDR--QIALFSATMPTAIARIAKQHLNN---PVHVAIEVQTMTNKSIRQRVWMMA 230
Query: 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVT 401
+ + I+ G I+F T+ + +++A+ L A AL+GDI Q QRE T
Sbjct: 231 GVHKLDALTRILEVEDFDG-VIVFVRTRIATAEIAEKLAARGYSAAALNGDIPQKQREAT 289
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
+ + G LVAT+VAARGLD+ + +I + P DVEAY+HR GRTGRAG E
Sbjct: 290 IDNLKRGTIDILVATDVAARGLDVERISHVINYDIPYDVEAYVHRIGRTGRAGRE 344
>gi|163839675|ref|YP_001624080.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
gi|162953151|gb|ABY22666.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
Length = 652
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 147/338 (43%), Positives = 199/338 (58%), Gaps = 23/338 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E PIQA T ++L+G D+VG A+TG GKT AF LP L + N P A+K T
Sbjct: 59 LKDVGYEKPSPIQAATIPVLLEGRDVVGLAQTGTGKTAAFALPALSRMANLP--ATKDT- 115
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
+LVL PTRELA QV E F Y + + +YGG+ Y Q L++G VV+
Sbjct: 116 -----QILVLAPTRELALQVAEAFSSYAAHMDNFSVLPVYGGSAYGPQLAGLRRGAQVVV 170
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ +G++DLS+L++ VLDEADEMLRMGF +DVE IL + + +V LFSA
Sbjct: 171 GTPGRVIDHLSKGSLDLSNLQYLVLDEADEMLRMGFADDVEQILAETPEDKQVA--LFSA 228
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSARSQVIPDIIRCY 360
T+P ++ I+ K+L + + + K K +T N R L + + I+
Sbjct: 229 TMPGQIRRIAKKYLNNPAEI-----SVKAKTTTGENTRQRYLQVMGPHKLDAMTRILEVE 283
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G I F TK + +LAD L A A++GDI Q QRE T+ RSG LVAT
Sbjct: 284 DYDG-VIAFVRTKMATEELADKLKSRGYRAAAINGDIPQQQRERTVEALRSGSIDVLVAT 342
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 343 DVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAG 380
>gi|124022674|ref|YP_001016981.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9303]
gi|123962960|gb|ABM77716.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9303]
Length = 636
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/346 (41%), Positives = 206/346 (59%), Gaps = 21/346 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S PL + L KG + PIQ ++ G DLVG+A+TG GKT AF LP++E L +
Sbjct: 88 FGFSEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIERLQD 147
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEF 232
+G P VLVL PTRELA QV + F Y G L +YGGA + +Q
Sbjct: 148 ----------HGSRPQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQIN 197
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
LK+G+DVV+GTPGR+ DH+ +G +D S L+ VLDEADEMLRMGF++DVE IL ++
Sbjct: 198 TLKRGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQL--P 255
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ Q +LFSAT+PS ++ +S ++L + ++ + + + +R + +S + +
Sbjct: 256 KERQMVLFSATMPSEIRRLSKRYL---HEPAEITIKSRDQEARLIRQRCITLQNSHKLEA 312
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSG 408
+ ++ ++ G IIF TK +A+ L A L+GD+ Q+QRE T+ R G
Sbjct: 313 LRRVLEAFTGEG-VIIFARTKVITLTVAEALESAGHDVAVLNGDVPQNQRERTVERLRKG 371
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG
Sbjct: 372 SVNILVATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAG 417
>gi|429730318|ref|ZP_19264966.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Corynebacterium durum F0235]
gi|429147909|gb|EKX90927.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Corynebacterium durum F0235]
Length = 446
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 150/374 (40%), Positives = 215/374 (57%), Gaps = 18/374 (4%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+++ + + L S GI+ F IQ +T + LDG DL+G+ARTGQGKTL F +P+L+ + +
Sbjct: 15 VAIEITDALDSFGIQHTFAIQELTLPLALDGIDLIGQARTGQGKTLGFGVPLLDRIFDSA 74
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
A P LV+ PTRELA QV +D + + +YGG PY Q L
Sbjct: 75 DIAE----LDGTPRALVVTPTRELAIQVADDLHRAAKNLPVRILTIYGGRPYEEQINALD 130
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KGIDVV+GTPGR+ D +RG++ L + VLDEADEML +GF+ +E +L + +K
Sbjct: 131 KGIDVVVGTPGRLLDLYQRGSLTLDQVAILVLDEADEMLNLGFLPAIEKLLKAL--THKH 188
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCSSSARSQVI 353
QT+LFSAT+P + ++ F+ K + + E A TN +R +V + V+
Sbjct: 189 QTMLFSATMPGPIVTLARTFM---HKPVHIRAEEPDAAQTNQDIRQVVFQAHRMDKVAVV 245
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSGK 409
I++ G+TIIF TK SA++LA+ L + A+HGD+ Q RE +L FRSG
Sbjct: 246 SRILQAQGR-GKTIIFARTKRSAAELANDLAASGFLVGAVHGDMGQPAREKSLTAFRSGD 304
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVI 469
LVAT+VAARG+DI+DV +I + P D Y+HR GRTGRAG +T V +
Sbjct: 305 IEILVATDVAARGIDIDDVTHVINYQTPDDEMTYVHRIGRTGRAG-HTGTAVTLVGYDEL 363
Query: 470 PAFKSAAEEL-LNN 482
P ++ EL L+N
Sbjct: 364 PKWQLINSELNLDN 377
>gi|88856286|ref|ZP_01130945.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
gi|88814370|gb|EAR24233.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
Length = 638
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/369 (41%), Positives = 212/369 (57%), Gaps = 23/369 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ IQA T +L+G D+VG A+TG GKT AF LPIL L +K
Sbjct: 36 GYETPSAIQAATIPTLLEGRDVVGLAQTGTGKTAAFALPILSRLDVSQSK---------- 85
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F+ Y + G+ +YGG Y Q L++G+ VV+GTPG
Sbjct: 86 PQALVLSPTRELALQVCEAFEKYATHMRGVHVLPVYGGQAYGVQLSALRRGVHVVVGTPG 145
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
RI DH+ +G +DLS LK+ VLDEADEML+MGF EDVE IL + +V LFSAT+P+
Sbjct: 146 RIMDHLAKGTLDLSELKYLVLDEADEMLKMGFAEDVETILADTPEDKQVA--LFSATMPA 203
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS K+L+ D + I + A+T+ R++V+ S + + I+ + G
Sbjct: 204 QIRRISKKYLR-DAEEITVKSQTTTSANTSQRYLVV--SYPQKVDALTRILEVENFEG-M 259
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK LA+ L A A+ GD+ Q+QRE T+ +SGK LVAT+VAARG
Sbjct: 260 IVFVRTKSETENLAEKLRARGYSAAAISGDVAQAQRERTVNQLKSGKLDILVATDVAARG 319
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV--EAAETITQVSDSVIPAFKSAAEELL 480
LD++ + ++ + P D E+Y+HR GRTGRAG A +T ++ A + A + L
Sbjct: 320 LDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGSAISFVTPRERRLLTAIEKATRQPL 379
Query: 481 NNSGLSAAE 489
L + E
Sbjct: 380 TQMQLPSVE 388
>gi|283457687|ref|YP_003362273.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
gi|283133688|dbj|BAI64453.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
Length = 574
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 208/364 (57%), Gaps = 8/364 (2%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + + L + GI S FPIQ +T + L G D++G+A+TG GKTL F LP ++ +
Sbjct: 19 FGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQRVVG 78
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+ Y AP L+L+PTRELA QV ED + LYGG P Q
Sbjct: 79 RDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQAEL 138
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L++G++VV+GTPGRI D ++G ++L +K VLDEADEML +GF VE IL + +
Sbjct: 139 LRRGLEVVVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLPEDR 198
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
Q++LFSAT+P V ++ +++ + + K ++R +V + ++I
Sbjct: 199 --QSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEMI 256
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
I+R + GRT+IFT+TK A+++A+ L A LHGD+ Q RE L FR+GK
Sbjct: 257 GRILRA-TGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTGK 315
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVI 469
LVAT+VAARG+D+ DV +I P D + Y+HR+GRTGRAG E +T V +
Sbjct: 316 VDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGT-AVTLVDWDDL 374
Query: 470 PAFK 473
P +K
Sbjct: 375 PRWK 378
>gi|336176951|ref|YP_004582326.1| DEAD/DEAH box helicase [Frankia symbiont of Datisca glomerata]
gi|334857931|gb|AEH08405.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
glomerata]
Length = 694
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/339 (41%), Positives = 201/339 (59%), Gaps = 18/339 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++KGI S FPIQ +T + L GSD++G+ARTG GKTLAF +P+ + T S+
Sbjct: 52 EALRAKGIVSPFPIQELTLPLALAGSDIIGQARTGTGKTLAFGIPLAQQAT------SRD 105
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
G P LV++PTREL QV D D G GL +YGG Y Q L+ G+D+V
Sbjct: 106 EGASGQPQALVVVPTRELCLQVTADIDRAGSGRGLRVLPVYGGRAYEPQLASLRAGVDIV 165
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ D + + L++++ VLDEADEML +GF+ DVE IL ++ D QTLLFS
Sbjct: 166 VGTPGRLLDLARQNALVLTAVRMLVLDEADEMLDLGFLPDVERILAQLPDIR--QTLLFS 223
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSARSQVIPDIIRC 359
AT+P V ++ +F+ ++ + + + T ++ V + + +V+ +++
Sbjct: 224 ATMPPPVISLARRFM---RRPVHVTAEHPDEGRTVPDISQHVFRAHALDKIEVLARVLQA 280
Query: 360 YSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
G I+F T+ +A ++AD L G A A+HGDI Q QRE L FRSGK LVA
Sbjct: 281 EGR-GLAIVFVRTRRTADRVADDLTGRGFAAAAVHGDIGQGQREQALRAFRSGKIDVLVA 339
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
T+VAARG+DI V ++ + P D Y+HR GRTGRAG
Sbjct: 340 TDVAARGIDIGGVTHVVNYQCPEDENVYLHRVGRTGRAG 378
>gi|254517068|ref|ZP_05129126.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
gi|219674573|gb|EED30941.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
Length = 609
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 172/458 (37%), Positives = 239/458 (52%), Gaps = 58/458 (12%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P + ++ L + L G E+ IQ MT +L+G DLVG+A+TG GKT AF LPI
Sbjct: 7 PGSFDELQLPAFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPI 66
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAP 226
L L K SK P LVL PTRELA QV E F Y + G +YGG+
Sbjct: 67 LARLD---PKLSK-------PQALVLAPTRELAIQVAEAFQKYARHSKGFKVLPIYGGSD 116
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
Y Q +L++G+ V++GTPGR+ DH+ RG+++LS+L VLDEADEMLRMGF++DVE IL
Sbjct: 117 YRTQLRQLERGVHVIVGTPGRVMDHMRRGSLNLSALTTLVLDEADEMLRMGFIDDVEWIL 176
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTN--VRHIVLP 343
+ K Q LFSAT+P ++ I+ + L K ++ TI K+K TN +R V
Sbjct: 177 EQT--PPKRQIALFSATMPDAIRRIAKQHLNKPEEITI------KLKTVTNASIRQRVWM 228
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQR 398
+ + I+ + G IIF T+ + +LAD L AR AL+GDI Q+QR
Sbjct: 229 MGGMHKLDALTRILETEDTDG-VIIFVRTRIATQELADKL-SARGYATAALNGDIAQNQR 286
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG---- 454
E T+ + G L+AT+VAARGLD+ + +I + P D EAY+HR GRTGRAG
Sbjct: 287 EKTVENLKKGGLDILIATDVAARGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGE 346
Query: 455 -----------------------VEAAETIT--QVSDSVIPAFKSAAEELLNNSGLSAAE 489
+E+ E T QVSD FK+ E L+ L AA
Sbjct: 347 AILFAANRERRLLRTIERVTGQKIESMELPTSEQVSDKRASRFKARITETLDTRDLGAAR 406
Query: 490 LLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPI 527
L ++ + G I+ + L + + A +P+
Sbjct: 407 ELVESYQQEFGVPIIEIAAALVVMNQGSAKAIPAAEPV 444
>gi|400977173|ref|ZP_10804404.1| ATP-dependent RNA helicase [Salinibacterium sp. PAMC 21357]
Length = 652
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 214/373 (57%), Gaps = 23/373 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
++ G E+ IQA T +L+G D+VG A+TG GKT AF LPIL L +K
Sbjct: 32 VRDIGYETPSAIQAATIPTLLEGRDVVGLAQTGTGKTAAFALPILSRLDVSQSK------ 85
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F+ Y + G+ +YGG Y Q L++G+ VV+
Sbjct: 86 ----PQALVLSPTRELALQVCEAFEKYATHMRGVHVLPVYGGQAYGVQLSALRRGVHVVV 141
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+ +G +DLS LK+ VLDEADEML+MGF EDVE IL D +V LFSA
Sbjct: 142 GTPGRIMDHLAKGTLDLSELKYLVLDEADEMLKMGFAEDVETILADTPDDKQVA--LFSA 199
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ IS K+L ++ + I + A+T+ R++V+ S + + I+ +
Sbjct: 200 TMPAQIRRISKKYL-NNAEEITVKSQTTTSANTSQRYLVV--SYPQKVDALTRILEVENF 256
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK LA+ L A A+ GD+ Q+QRE T+ +SGK LVAT+V
Sbjct: 257 EG-MIVFVRTKSETENLAEKLRARGYSAAAISGDVAQAQRERTVNQLKSGKLDILVATDV 315
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV--EAAETITQVSDSVIPAFKSAA 476
AARGLD++ + ++ + P D E+Y+HR GRTGRAG A +T ++ A + A
Sbjct: 316 AARGLDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGSAISFVTPRERRLLTAIEKAT 375
Query: 477 EELLNNSGLSAAE 489
+ L L + E
Sbjct: 376 RQPLTQMQLPSVE 388
>gi|379710610|ref|YP_005265815.1| ATP-dependent RNA helicase [Nocardia cyriacigeorgica GUH-2]
gi|374848109|emb|CCF65181.1| ATP-dependent RNA helicase [Nocardia cyriacigeorgica GUH-2]
Length = 591
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 147/332 (44%), Positives = 200/332 (60%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L G+D+VG A+TG GKT AF +PIL L PT G+A
Sbjct: 38 GYESPSPIQAATIPPLLAGADVVGLAQTGTGKTAAFAIPILMGLE--PT--------GKA 87
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y + GL +YGG Y Q L++G VV+GTPG
Sbjct: 88 PRALVLAPTRELAIQVAEAFGRYATHIPGLHVLPIYGGQSYGVQLSGLRRGAHVVVGTPG 147
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G +DLS L++ VLDEADEML+MGF EDVE IL A+K Q LFSAT+P+
Sbjct: 148 RVIDHLEKGTLDLSQLQYLVLDEADEMLKMGFQEDVERILADTP-ADK-QVALFSATMPA 205
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS ++L +++ K +TN+ + S + + I+ S
Sbjct: 206 AIRKISKQYLHD---PVEITVKAKTSTNTNITQRWVQVSHQRKLDALTRILEVESFEA-M 261
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK++ +LA+ L A A++GDI Q+QRE T+ ++G LVAT+VAARG
Sbjct: 262 IIFVRTKQATEELAEKLRARGFSAAAINGDIAQAQRERTIGQLKAGTLDILVATDVAARG 321
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 322 LDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 353
>gi|54026656|ref|YP_120898.1| ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
gi|54018164|dbj|BAD59534.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
Length = 602
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 143/332 (43%), Positives = 198/332 (59%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +LDG+D+VG A+TG GKT AF +PIL L GR
Sbjct: 48 GYESPSPIQAATIPPLLDGADVVGLAQTGTGKTAAFAIPILMGLEV----------TGRQ 97
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y + GL +YGG Y Q L++G VV+GTPG
Sbjct: 98 PRALVLAPTRELAIQVAEAFGRYAAHMPGLHVLPIYGGQSYGVQLSGLRRGAHVVVGTPG 157
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G +DLS L++ VLDEADEML+MGF EDVE IL + + Q LFSAT+P+
Sbjct: 158 RVIDHLEKGTLDLSQLQYLVLDEADEMLKMGFQEDVERILA--DTPREKQVALFSATMPA 215
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS ++L ++ +++ K + +TN+ + S + + ++
Sbjct: 216 AIRKISKQYL---REPVEITVKAKTQTNTNITQRWVQVSHQRKLDALTRVLEVEPFEA-M 271
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK+ +LA+ L A A++GDI Q+QRE T+ +SG LVAT+VAARG
Sbjct: 272 IIFVRTKQGTEELAEKLRARGFSAAAINGDIAQNQRERTIGQLKSGALDILVATDVAARG 331
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 332 LDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 363
>gi|427419103|ref|ZP_18909286.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
gi|425761816|gb|EKV02669.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
Length = 565
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 145/350 (41%), Positives = 201/350 (57%), Gaps = 21/350 (6%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
+ S +S P+ + L+ G ES PIQA T VL G DL+G+A+TG GKT AF LP+L
Sbjct: 8 SFSELSLSEPVIKALEGLGYESPTPIQAQTIPHVLAGVDLIGQAQTGTGKTAAFALPLL- 66
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYH 228
S+ R P LVL PTRELA QV E F Y + G LYGG Y
Sbjct: 67 ---------SRVNIEQRLPHTLVLTPTRELAIQVAEAFQSYASHMKGFHVLPLYGGQSYS 117
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q KL++ + +V+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF++DVE +L K
Sbjct: 118 IQLRKLERSVHIVVGTPGRVMDHMKRGTLDLSALQCLVLDEADEMLRMGFIDDVEWVLEK 177
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
+ +V LFSATLP ++HI+ + L + +++ K + +R S
Sbjct: 178 TPASRQVA--LFSATLPKEIRHIAQRHLNNPT---EVLIKSKTSTADTIRQRYWMVSGYH 232
Query: 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAG 404
+ + I+ + G I+F T+ + +LA+ L L GDI Q QRE T+
Sbjct: 233 KLDALTRILETETFDG-MIVFVRTRLATVELAEKLEARGYETAPLSGDISQMQRERTVEQ 291
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+SGK +VAT+VAARGLD++ + +I + P D E Y+HR GRTGRAG
Sbjct: 292 LKSGKLDIVVATDVAARGLDVDRISHVINYDMPYDTETYVHRVGRTGRAG 341
>gi|255326979|ref|ZP_05368055.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
gi|255296196|gb|EET75537.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
Length = 565
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 141/364 (38%), Positives = 207/364 (56%), Gaps = 8/364 (2%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + + L + GI S FPIQ +T + L G D++G+A+TG GKTL F LP ++ +
Sbjct: 19 FGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQRVVG 78
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+ Y AP L+L+PTRELA QV ED + LYGG P Q
Sbjct: 79 RDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQAEL 138
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L++G++V +GTPGRI D ++G ++L +K VLDEADEML +GF VE IL + +
Sbjct: 139 LRRGLEVAVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLPEDR 198
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
Q++LFSAT+P V ++ +++ + + K ++R +V + ++I
Sbjct: 199 --QSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEMI 256
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
I+R + GRT+IFT+TK A+++A+ L A LHGD+ Q RE L FR+GK
Sbjct: 257 GRILRA-TGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTGK 315
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVI 469
LVAT+VAARG+D+ DV +I P D + Y+HR+GRTGRAG E +T V +
Sbjct: 316 VDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGT-AVTLVDWDDL 374
Query: 470 PAFK 473
P +K
Sbjct: 375 PRWK 378
>gi|375093701|ref|ZP_09739966.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
gi|374654434|gb|EHR49267.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
Length = 635
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 163/436 (37%), Positives = 233/436 (53%), Gaps = 41/436 (9%)
Query: 52 KRKESEIE----EEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEH 107
KR ++ I+ E E T ++ P+ + E + E GV H
Sbjct: 72 KRNDNSIDPAALEHSESGATETDTSHPLQPLPDAEVVAEPDNPTFTELGV---------H 122
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P+ V L + GIE F IQA+T + L G DL+G+ARTG GKTL F +P+
Sbjct: 123 PDIV----------RALSAAGIERTFAIQALTLPLALAGEDLIGQARTGMGKTLGFGVPV 172
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
L+ LT G G P LV++PTREL QV D +G+ + +YGG PY
Sbjct: 173 LQRLT--------LPGDG-TPQALVVVPTRELCLQVTHDLTDAAKHLGVRTTAIYGGRPY 223
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
+Q L+KG+D+VIGTPGR+ D E+ ++ L +K VLDEADEML +GF+ D+E IL
Sbjct: 224 ESQIEALRKGVDLVIGTPGRLLDLAEQRHLVLGKVKALVLDEADEMLDLGFLPDIERILR 283
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
V + + QT+LFSAT+P + ++ FL+ I + R V S
Sbjct: 284 MVPE--QRQTMLFSATMPGPIITLARTFLRQPTH-IRAEETDAGAIHERTRQFVYRSHSL 340
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403
+ +++ +++ G T+IFT TK +A ++AD L A A+HGD+ Q RE L
Sbjct: 341 DKPELVAKVLQA-DGRGLTMIFTRTKRTAQKVADDLAERGFAAAAVHGDLGQGAREQALR 399
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQ 463
FRSGK LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG + IT
Sbjct: 400 AFRSGKIDVLVATDVAARGIDVDDVTHVINYQTPDDEKTYVHRIGRTGRAG-KTGVAITL 458
Query: 464 VSDSVIPAFKSAAEEL 479
V +P +K ++EL
Sbjct: 459 VDWDELPRWKLISDEL 474
>gi|170782231|ref|YP_001710564.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156800|emb|CAQ01964.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 585
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 217/373 (58%), Gaps = 23/373 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E+ IQA T +L G D++G A+TG GKT AF LPIL +L ++KT
Sbjct: 32 LKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPILSNL-----DVAQKT- 85
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F+ Y G G+ +YGG Y Q L++G+ VV+
Sbjct: 86 ----PQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQLSALRRGVHVVV 141
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+++G +DLS LKF VLDEADEML+MGF EDVE IL + ++ LFSA
Sbjct: 142 GTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPKSKQIA--LFSA 199
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ IS K+L+ D + I + A+T R++++ S + + I+ +
Sbjct: 200 TMPAQIRRISGKYLQ-DPEEITVKNKTTTSANTTQRYLMV--SYPQKVDALTRILETENF 256
Query: 363 GGRTIIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK LA+ L A A+ GD+ Q+QRE T+ ++GK LVAT+V
Sbjct: 257 EG-MIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILVATDV 315
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAET--ITQVSDSVIPAFKSAA 476
AARGLD++ + ++ + P D E+Y+HR GRTGRAG A +T ++ A + A
Sbjct: 316 AARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPRERRLLTAIEKAT 375
Query: 477 EELLNNSGLSAAE 489
+ L + +AE
Sbjct: 376 RQPLTEMRMPSAE 388
>gi|399020147|ref|ZP_10722287.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398096157|gb|EJL86486.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 899
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 199/348 (57%), Gaps = 21/348 (6%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S +S PL LK G E+ PIQA T +L+ D++G+A+TG GKT AF LPIL +
Sbjct: 10 SDLNLSEPLLRVLKELGYETPSPIQAATIPTLLNNRDVLGQAQTGTGKTAAFALPILSRI 69
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQ 230
T AP LVL PTRELA QV E F Y + G +YGG Y Q
Sbjct: 70 DIRQT----------APQALVLAPTRELAIQVAEAFQRYATHIPGFHVLPIYGGQSYGPQ 119
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
L++G+ VV+GTPGR+ DH+++G++DLS LK VLDEADEMLRMGF++DVE IL K
Sbjct: 120 LSALRRGVHVVVGTPGRVIDHLDKGSLDLSQLKTMVLDEADEMLRMGFIDDVESILQKTP 179
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
QT LFSAT+P+ +K I+ +L+ D I + K + N+R S +
Sbjct: 180 ATR--QTTLFSATMPAVIKRIAKTYLR-DPAEITVAA--KTGTAENIRQRYWLVSGMHKL 234
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFR 406
+ I+ G IIF+ TK +LA L A A++GD+QQ QRE T+ +
Sbjct: 235 DALTRILEVEPFDG-LIIFSRTKLGTEELAGKLQARGFAAAAINGDVQQQQRERTIQQLK 293
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G+ L+AT+VAARGLD+ + +I + P D E+Y HR GRTGRAG
Sbjct: 294 DGQIDILIATDVAARGLDVERISHVINYDVPYDPESYTHRIGRTGRAG 341
>gi|55733661|emb|CAH93507.1| hypothetical protein [Pongo abelii]
Length = 413
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 156/413 (37%), Positives = 216/413 (52%), Gaps = 57/413 (13%)
Query: 18 MNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEEEEERSET--SSELGEPV 75
M K+ D E EA L E S KK+ +K + K R + +E+ E E + +L P
Sbjct: 1 MPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPK 60
Query: 76 -------------------NLKSEKEKKKKKKAKVEPEAGVEEQER--------GESEHP 108
L E K K + K P ++E E+ S H
Sbjct: 61 AKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHK 120
Query: 109 N----------------AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+ A S F IS + LK +G+ LFPIQ TF V +G DL+ +
Sbjct: 121 SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQ 180
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYG 211
ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDI-- 234
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D
Sbjct: 235 -TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVD 293
Query: 272 EMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG
Sbjct: 294 QMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK 353
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA 380
KA+T V H+ + C S R VI D+++ YS S GR IIF ETK++ +++A
Sbjct: 354 MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMA 406
>gi|269218758|ref|ZP_06162612.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
str. F0332]
gi|269211869|gb|EEZ78209.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
str. F0332]
Length = 531
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 221/371 (59%), Gaps = 22/371 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT- 172
F +S P+ + LK KGI FPIQA+T + L G+D++G+A+TG GKTL F +P+LE+
Sbjct: 41 FGVSTPIVDALKDKGITHPFPIQALTLPVALRGNDIIGQAKTGTGKTLGFGIPMLENTAG 100
Query: 173 -------NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225
+ P +A K P LV+LPTRELAKQV E+ L +YGG
Sbjct: 101 IDEEGWESVPVQARGK------PQGLVILPTRELAKQVAEELRAAAARRRLRIVEVYGGR 154
Query: 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285
Y Q+ LK+G ++V+GTPGR+ D ++ +DL+ ++ VLDEADEML +GF+EDVE I
Sbjct: 155 AYEPQQEALKEGAEIVVGTPGRLVDLMKHRFLDLTYVRTVVLDEADEMLDLGFLEDVEKI 214
Query: 286 LGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
L +N+ T+LFSAT+P V ++ +++ ++ +VR +V C
Sbjct: 215 LASTP-SNR-HTMLFSATMPGPVVAMARRYMSRPTHIRAADPSDTGVTVKSVRQVVYRCH 272
Query: 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVT 401
+ +S+V+ I++ G TI+FT TK +A++LA+ L A ALHGD+ Q RE
Sbjct: 273 ALNKSEVLARILQAKGR-GLTIVFTRTKRTAARLAEELTERGFAAGALHGDLGQGAREQA 331
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETI 461
L FR+GK LVAT+VAARG+D++DV +I + P D + YIHR GRTGRAG ++ +
Sbjct: 332 LRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYIHRIGRTGRAG-QSGTAV 390
Query: 462 TQVSDSVIPAF 472
T V +P +
Sbjct: 391 TFVDWDDLPRW 401
>gi|88704236|ref|ZP_01101950.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
KT71]
gi|88701287|gb|EAQ98392.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
KT71]
Length = 604
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 173/455 (38%), Positives = 236/455 (51%), Gaps = 64/455 (14%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
++ V L + L G E+ IQ MT +L+G DLVG+A+TG GKT AF LPIL L
Sbjct: 13 LQLPVFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPILARLD- 71
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEF 232
K +K P LVL PTRELA QV E F Y + G +YGG+ Y Q
Sbjct: 72 --AKLAK-------PQALVLAPTRELAIQVAEAFQKYARHSKGFKVLPIYGGSDYRTQLR 122
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+L++G+ V++GTPGR+ DH+ RG++DLS+LK VLDEADEMLRMGF++DVE IL +
Sbjct: 123 QLQRGVHVIVGTPGRVMDHMRRGSLDLSALKTLVLDEADEMLRMGFIDDVEWILEQTPPE 182
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTN--VRHIVLPCSSSAR 349
Q LFSAT+P ++ I+ + L K ++ TI K+K TN +R V +
Sbjct: 183 R--QIALFSATMPDAIRRIAQQHLSKPEEITI------KLKTVTNASIRQRVWMMGGMHK 234
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+ I+ + G IIF T+ + +LAD L G AL+GDI Q+ RE T+
Sbjct: 235 LDALTRILETEDTDG-IIIFVRTRIATQELADKLAARGYGTAALNGDIPQNLREKTVENL 293
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG----------- 454
+ G LVAT+VAARGLD+ + +I + P D EAY+HR GRTGRAG
Sbjct: 294 KKGALDILVATDVAARGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAAN 353
Query: 455 ----------------VEAAETIT--QVSDSVIPAFKSAAEELLNNSGLSAAELLAKALA 496
+E+ E T QVSD FK+ E L+ +A L ++
Sbjct: 354 RERRLLRTIERVTGQKIESMELPTSEQVSDKRAARFKARITETLDTQDRESARALVESYQ 413
Query: 497 KAVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPS 531
+ G I + L VV+ GK TP+
Sbjct: 414 QEFGVPIIDIAAAL--------VVMNQGKAPATPA 440
>gi|326774180|ref|ZP_08233462.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505]
gi|326636319|gb|EGE37223.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505]
Length = 558
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 223/373 (59%), Gaps = 14/373 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + E L +KGI FPIQA+T + L+G D++G+A+TG GKTL F +P+L ++L
Sbjct: 75 FGVEPEICEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLG 134
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + G +P LV+LPTRELAKQV E+ + +YGG Y Q
Sbjct: 135 PGEEGWDEDPASG-SPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIE 193
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +VV+GTPGR+ D +ERG +DL+ + VLDEADEML +GF+ DVE IL + A
Sbjct: 194 DLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTR-A 252
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
++ T+LFSAT+P V ++ +++ + G+E M T V+ +V S + +
Sbjct: 253 DR-HTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQT-VQQVVYRTHSMNKVE 310
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGFR 406
V+ I++ GRTIIF TK +A+++AD L AR ALHGD+ Q RE L FR
Sbjct: 311 VVSRILQAEGR-GRTIIFARTKRTAARVADDL-RARGFATGALHGDLGQGAREQALRAFR 368
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD 466
+ K LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG + +T V
Sbjct: 369 NNKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAG-NSGTAVTFVDW 427
Query: 467 SVIPAFKSAAEEL 479
+P ++ A+ L
Sbjct: 428 DDVPRWRIIAKAL 440
>gi|148239847|ref|YP_001225234.1| superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
gi|147848386|emb|CAK23937.1| Superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
Length = 606
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 147/367 (40%), Positives = 215/367 (58%), Gaps = 22/367 (5%)
Query: 94 EAGVEEQERGES-EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGR 152
+A E GES E + + F S L + L +KG + PIQ F ++ G DLVG+
Sbjct: 41 DADSEATSEGESAESASGFAGFGFSEALLKTLDAKGYKEPSPIQKAAFPELMLGRDLVGQ 100
Query: 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG- 211
A+TG GKT AF LP+LE L G P VLVL PTRELA QV + F Y
Sbjct: 101 AQTGTGKTAAFALPLLERLD----------GRSNTPRVLVLAPTRELAMQVADSFKAYAA 150
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
G L +YGG+ + +Q LK+G+DVV+GTPGR+ DH+ +G +D + L+ VLDEAD
Sbjct: 151 GHPHLNVLAIYGGSDFRSQIHALKRGVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEAD 210
Query: 272 EMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKM 331
EMLRMGF++DVE IL ++ + +V +LFSAT+P+ ++ +S ++L ++ ++ K
Sbjct: 211 EMLRMGFIDDVEWILDQLPEERQV--VLFSATMPNEIRRLSKRYL---REPAEITIKTKD 265
Query: 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----R 387
+ + +R + ++ + + + ++ + G IIF TK +A+ L A
Sbjct: 266 REAKRIRQRSITLQNAHKIEALNRVLEAVTGEG-VIIFARTKAITLTVAESLEAAGHDVA 324
Query: 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRS 447
L+GD+ Q+QRE T+ R G LVAT+VAARGLD++ + L+I + P D EAY+HR
Sbjct: 325 VLNGDVPQNQRERTVDRLRKGTVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRI 384
Query: 448 GRTGRAG 454
GRTGRAG
Sbjct: 385 GRTGRAG 391
>gi|384564633|ref|ZP_10011737.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
gi|384520487|gb|EIE97682.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
Length = 521
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 208/360 (57%), Gaps = 18/360 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQA+T + L G D++G+ARTG GKT F +P+L+ LT G
Sbjct: 9 LAESGIERTFDIQALTLPLALRGEDVIGQARTGTGKTFGFGVPLLQRLT--------LPG 60
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QV +D + G +G+ +YGG PY +Q L+KG+DVVIG
Sbjct: 61 DG-TPQALVVVPTRELCLQVSQDLENAGKHLGVRIASIYGGRPYESQIKTLRKGVDVVIG 119
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ ++ L + VLDEADEML +GF+ D+E IL V D QT+LFSAT
Sbjct: 120 TPGRLLDLAEQRHLVLGKIATLVLDEADEMLDLGFLPDIERILRMVPDER--QTMLFSAT 177
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL I +E V S + +++ +++
Sbjct: 178 MPGPILTLARTFLHQPTH-IRAEDHEAGAVHERTTQFVYRSHSLDKPELVAKVLQAEGR- 235
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 236 GLTMIFTRTKRTAQKVADDLTERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVA 295
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEEL 479
ARG+D++DV +I + P D + Y+HR GRTGRAG +A IT V +P +K ++EL
Sbjct: 296 ARGIDVDDVTHVINYQTPEDEKTYVHRIGRTGRAG-KAGVAITLVDWDEVPRWKLISDEL 354
>gi|422324449|ref|ZP_16405486.1| hypothetical protein HMPREF0737_00596 [Rothia mucilaginosa M508]
gi|353343971|gb|EHB88284.1| hypothetical protein HMPREF0737_00596 [Rothia mucilaginosa M508]
Length = 638
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 207/364 (56%), Gaps = 8/364 (2%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + + L + GI S FPIQ +T + L G D++G+A+TG GKTL F LP ++ +
Sbjct: 77 FGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQRVVG 136
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+ Y AP L+L+PTRELA QV ED + LYGG P Q
Sbjct: 137 RDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQAEL 196
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L++G++V +GTPGRI D ++G ++L +K VLDEADEML +GF VE IL + +
Sbjct: 197 LRRGLEVAVGTPGRIIDLCQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLPEDR 256
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
Q++LFSAT+P V ++ +++ + + K ++R +V + ++I
Sbjct: 257 --QSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEMI 314
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
I+R + GRT+IFT+TK A+++A+ L A LHGD+ Q RE L FRSGK
Sbjct: 315 GRILRA-TGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRSGK 373
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVI 469
LVAT+VAARG+D+ DV +I P D + Y+HR+GRTGRAG E +T V +
Sbjct: 374 VDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGT-AVTLVDWDDL 432
Query: 470 PAFK 473
P +K
Sbjct: 433 PRWK 436
>gi|381164531|ref|ZP_09873761.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
gi|379256436|gb|EHY90362.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
Length = 538
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 210/360 (58%), Gaps = 18/360 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L + GIE F IQA+T + L G D++G+ARTG GKTL F +P+L+ L G
Sbjct: 21 LDASGIERTFDIQALTLPLALSGDDVIGQARTGTGKTLGFGVPLLQRLA--------LPG 72
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QV +D + G +G+ +YGG PY +Q L+ G+DVVIG
Sbjct: 73 DG-TPQALVVVPTRELCVQVSQDLENAGKHLGVRIASIYGGRPYESQIKSLRDGVDVVIG 131
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ ++ L + VLDEADEML +GF+ D+E IL V + + QT+LFSAT
Sbjct: 132 TPGRLLDLAEQRHLVLGKVATLVLDEADEMLDLGFLPDIERILRMVPE--QRQTMLFSAT 189
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL+ I NE V S + +++ +++ +
Sbjct: 190 MPGPILTLARTFLRQPTH-IRAEDNEAGAVHERTTQFVYRSHSLDKPELVAKVLQAENR- 247
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 248 GLTMIFTRTKRTAQKVADDLTERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVA 307
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEEL 479
ARG+D++DV +I + P D + Y+HR GRTGRAG + IT V IP +K ++EL
Sbjct: 308 ARGIDVDDVTHVINYQTPEDEKTYVHRIGRTGRAG-KTGVAITLVDWDEIPRWKLISDEL 366
>gi|343522606|ref|ZP_08759572.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 175 str. F0384]
gi|343402015|gb|EGV14521.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 175 str. F0384]
Length = 558
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 223/373 (59%), Gaps = 14/373 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + E L +KGI FPIQA+T + L+G D++G+A+TG GKTL F +P+L ++L
Sbjct: 75 FGVEPEICEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLG 134
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + G +P LV+LPTRELAKQV E+ + +YGG Y Q
Sbjct: 135 PGEEGWDEDPASG-SPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIE 193
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +VV+GTPGR+ D +ERG +DL+ + VLDEADEML +GF+ DVE IL + A
Sbjct: 194 DLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTR-A 252
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
++ T+LFSAT+P V ++ +++ + G+E M T V+ +V S + +
Sbjct: 253 DR-HTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQT-VQQVVYRTHSMNKVE 310
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGFR 406
V+ I++ GRTIIF TK +A+++AD L AR ALHGD+ Q RE L FR
Sbjct: 311 VVSRILQAEGR-GRTIIFARTKRTAARVADDL-RARGFATGALHGDLGQGAREQALRAFR 368
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD 466
+ K LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG + +T V
Sbjct: 369 NNKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAG-NSGTAVTFVDW 427
Query: 467 SVIPAFKSAAEEL 479
+P ++ A+ L
Sbjct: 428 DDVPRWRIIAKAL 440
>gi|50954992|ref|YP_062280.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951474|gb|AAT89175.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 589
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 147/336 (43%), Positives = 201/336 (59%), Gaps = 21/336 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E+ IQA T ++L+G D+VG A+TG GKT AF LPIL L S+K+
Sbjct: 32 LKDVGYETPSAIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPILSRL-----DLSQKS- 85
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F+ Y + G+ +YGG Y Q L++G+ +V+
Sbjct: 86 ----PQALVLAPTRELALQVAEAFESYATHLKGVHLLPVYGGQGYGVQLSALRRGVHIVV 141
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+++G +DLS LK VLDEADEML+MGF EDVE IL D +V LFSA
Sbjct: 142 GTPGRIMDHLDKGTLDLSGLKHLVLDEADEMLKMGFAEDVEKILADTPDDKQVA--LFSA 199
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ IS K+L D + + + A+T R++V S S + + I+ +
Sbjct: 200 TMPAQIRRISKKYLH-DPEEVTVKARTTTSANTTQRYLV--VSYSQKVDALTRILEVENF 256
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
I+F TK LA+ L A A+ GD+ Q+QRE T+ +SGK LVAT+V
Sbjct: 257 EA-MIVFVRTKNETETLAERLRARGYSAAAISGDVAQAQRERTVGQLKSGKLDILVATDV 315
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 316 AARGLDVDRISHVVNFDIPVDTESYVHRIGRTGRAG 351
>gi|297626176|ref|YP_003687939.1| DEAD/DEAH box helicase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921941|emb|CBL56501.1| DEAD/DEAH box helicase domain protein [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 501
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 140/338 (41%), Positives = 199/338 (58%), Gaps = 10/338 (2%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L ++GI FPIQ M + L G+D++G+ARTG GKTLAF +PIL+ + + +
Sbjct: 31 LDAEGITHPFPIQEMAIPIALTGTDMIGQARTGTGKTLAFGIPILQKVVLKTDEGFDQLD 90
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
P LV+ PTRELA+QV D + G +YGG Y Q LKKG+DVV+G
Sbjct: 91 PKDKPQALVMSPTRELAQQVGSDLAIAGRDRHARVLTIYGGVGYDDQLDALKKGVDVVVG 150
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D + RGN+DLS ++ VLDEADEML +GF+ DV+ +L + + QT++FSAT
Sbjct: 151 TPGRLLDLVHRGNLDLSHVRIAVLDEADEMLDLGFLPDVQALLDRTPASR--QTMMFSAT 208
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P+ + ++ L I G + + + ++I +++ S G
Sbjct: 209 MPAVIMSLARSRLNQ-PVNIRAEGRDAQATVPQTTQFIYQAHELDKPEMIGKMLQ--SEG 265
Query: 364 GR-TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
R ++FT TK +A +LAD L A +LHGD+ QSQRE T+ FR+ K LVAT+V
Sbjct: 266 MRKMMVFTRTKRAAQRLADDLRDRGFEAASLHGDLNQSQREKTMKRFRNDKIQVLVATDV 325
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
AARG+D++DV ++ E P D E Y+HR GRTGRAG E
Sbjct: 326 AARGIDVDDVTHVVNYEVPDDPEQYVHRIGRTGRAGHE 363
>gi|352081054|ref|ZP_08951932.1| DEAD/DEAH box helicase domain protein [Rhodanobacter sp. 2APBS1]
gi|351683095|gb|EHA66179.1| DEAD/DEAH box helicase domain protein [Rhodanobacter sp. 2APBS1]
Length = 619
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 149/376 (39%), Positives = 210/376 (55%), Gaps = 25/376 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L+G D++G+A+TG GKT AF LPIL + P K
Sbjct: 28 LADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRIERRPGK------ 81
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F Y V G +YGG Y Q LK+G+ VV+
Sbjct: 82 ----PQALVLAPTRELAIQVAEAFQTYAAHVPGFQVLPIYGGQSYGPQLHSLKRGVHVVV 137
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+++G +DLS LKF VLDEADEMLRMGF++DVE +L +V LFSA
Sbjct: 138 GTPGRVIDHLDKGTLDLSELKFLVLDEADEMLRMGFIDDVEKVLQATPPGRQV--ALFSA 195
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ + L K+ +++ + N+ S + + I+
Sbjct: 196 TMPAPIRKIAQRHL---KEPVEVTIKSSTTTAANIHQRYWFVSGMHKLDALTRILEAEPF 252
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ +LA+ L A A++GDI Q+QRE + + GK LVAT+V
Sbjct: 253 DA-MIIFARTKQATEELAEKLQARGLAAAAINGDIAQAQRERVIQQLKDGKLDILVATDV 311
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD---SVIPAFKSA 475
AARGLD+ + ++ + P D E+Y+HR GRTGRAG + E I VS ++ A + A
Sbjct: 312 AARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG-RSGEAILFVSPRERGMLHAIERA 370
Query: 476 AEELLNNSGLSAAELL 491
+ + L + E++
Sbjct: 371 TRQPIEQMQLPSVEVV 386
>gi|295394596|ref|ZP_06804815.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
gi|294972489|gb|EFG48345.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
Length = 459
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 139/343 (40%), Positives = 198/343 (57%), Gaps = 12/343 (3%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L + GI FPIQA+T + L G+D++G+A+TG GKTL F +P+L+ + +
Sbjct: 11 VEAPIVESLTNAGITHPFPIQALTLPVALTGADIIGQAKTGTGKTLGFGIPLLQRILDEQ 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
++ GRAP LV++PTRELA QV +D V + +YGG + Q LK
Sbjct: 71 SREQ-----GRAPRALVVVPTRELAHQVADDLRVASRTFSPSIVTIYGGKDFEPQIRALK 125
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
G DVV+GTPGR+ D R ++ S + V DEADEML +GF+ DVE I+ + K
Sbjct: 126 DGADVVVGTPGRLLDLYGRRVLNFSHITTAVFDEADEMLDLGFLPDVEKIVAAL--PAKR 183
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ ++ S N + V S +++++
Sbjct: 184 QTMLFSATMPGQVIALARRYMTQPTHIRATQASDTSTTSVNTKQYVYRAHSMDKTELVGR 243
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
I+R GRTIIF TK +A +L L A+ALHGD+ Q RE L FR G
Sbjct: 244 ILRA-EGRGRTIIFARTKRTADRLTGELKARGFQAQALHGDLNQHMREKALKRFRDGTTD 302
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG
Sbjct: 303 VLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAG 345
>gi|194365003|ref|YP_002027613.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia R551-3]
gi|194347807|gb|ACF50930.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
R551-3]
Length = 646
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 140/332 (42%), Positives = 193/332 (58%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L+G D++G+A+TG GKT AF LP+L ++ K
Sbjct: 28 GYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVLSNIDLQQIK---------- 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y + G +YGG PY Q L++G+ +V+GTPG
Sbjct: 78 PQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRRGVHIVVGTPG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH++R +DLS LK VLDEADEMLRMGF++DVE +L K+ K Q LFSAT+P
Sbjct: 138 RVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL--PAKRQVALFSATMPP 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +L+ +++ K S N+R S + + I+
Sbjct: 196 QIRRIAQTYLQD---PVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFDA-M 251
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK +LA L A A++GD+QQ+QRE T+A + GK LVAT+VAARG
Sbjct: 252 IIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 312 LDVERISHVLNYDIPYDTESYVHRIGRTGRAG 343
>gi|87124726|ref|ZP_01080574.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
gi|86167605|gb|EAQ68864.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
Length = 603
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 143/347 (41%), Positives = 205/347 (59%), Gaps = 23/347 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT- 172
F S L L SKG ++ PIQ F ++ G DLVG+A+TG GKT AF LP+LE L
Sbjct: 48 FGFSEALLRTLASKGYQAPSPIQRAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLQP 107
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQE 231
GP P VLVL PTRELA QV E F Y G L +YGG+ + +Q
Sbjct: 108 EGP-----------GPQVLVLAPTRELAMQVAESFKAYAAGHPHLNVLAIYGGSDFRSQI 156
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
LK+G+DVV+GTPGR+ DH+ +G ++ S L+ VLDEADEMLRMGF++DVE IL ++ +
Sbjct: 157 HSLKRGVDVVVGTPGRVMDHMRQGTLNTSHLRSLVLDEADEMLRMGFIDDVEWILDQLPE 216
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
+V +LFSAT+P+ ++ +S ++L ++ ++ + K + +R + +S + +
Sbjct: 217 ERQV--VLFSATMPAEIRRLSKRYL---REPAEITIKTQEKEARRIRQRCITLQNSHKLE 271
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRS 407
+ ++ + G IIF TK +++ L L+GD+ Q+QRE T+ R
Sbjct: 272 ALNRVLEAVTGEG-VIIFARTKAITLTVSENLEATGHDVAVLNGDVPQNQRERTVERLRK 330
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G LVAT+VAARGLD+ + L+I + P D EAY+HR GRTGRAG
Sbjct: 331 GTVNILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAG 377
>gi|365827882|ref|ZP_09369720.1| hypothetical protein HMPREF0975_01503, partial [Actinomyces sp.
oral taxon 849 str. F0330]
gi|365264596|gb|EHM94396.1| hypothetical protein HMPREF0975_01503, partial [Actinomyces sp.
oral taxon 849 str. F0330]
Length = 540
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 219/372 (58%), Gaps = 12/372 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + + L +KGI FPIQA+T + L+G D++G+A+TG GKTL F +P+L ++L
Sbjct: 73 FGVEPEICDALSAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLG 132
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + G +P LV+LPTRELAKQV E+ + +YGG Y Q
Sbjct: 133 PGEEGWDEDPASG-SPQALVILPTRELAKQVAEELSTAAARRTVRIVQVYGGRAYEPQIE 191
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +VV+GTPGR+ D ++RG +DL+ + VLDEADEML +GF+ DVE IL +
Sbjct: 192 DLERGAEVVVGTPGRLIDLMDRGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTR-- 249
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
T+LFSAT+P V ++ +++ + G+E M T V+ +V S + +
Sbjct: 250 TDRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQT-VQQVVYRTHSMNKVE 308
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ GRTIIF TK +A+++AD L ALHGD+ Q RE L FR+
Sbjct: 309 VVSRILQAEGR-GRTIIFARTKRTAARVADDLRTRGFAPAALHGDLGQGAREQALRAFRN 367
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDS 467
GK LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG + +T V
Sbjct: 368 GKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAG-NSGTAVTFVDWD 426
Query: 468 VIPAFKSAAEEL 479
+P ++ A+ L
Sbjct: 427 DVPRWRIIAKAL 438
>gi|375292598|ref|YP_005127137.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
INCA 402]
gi|371582269|gb|AEX45935.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
INCA 402]
Length = 436
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 211/365 (57%), Gaps = 15/365 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + G++ F IQ +T + LDG DL+G+ARTG GKT F +P+++ + + A+
Sbjct: 19 ITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFD----AA 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P LV++PTRELA QV +D + + +T +YGG PY Q +L+ G+D
Sbjct: 75 DVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D +RGN+ L + VLDEADEML +GF D+E +L + + QT+L
Sbjct: 135 VVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
FSAT+P V ++ F+ + G + AST I+ +S V +++
Sbjct: 193 FSATMPGAVVTLARTFMHQPVHIRAEDTGAAQTHASTT--QIIFQAHRMDKSAVTARVLQ 250
Query: 359 CYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTLAGFRSGKFMTLV 414
G+TIIF TK +A++LAD L G R +HGD+ QS RE +L FR+GK LV
Sbjct: 251 A-EGRGKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILV 309
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS 474
AT+VAARGLDI+DV +I + P D Y+HR GRTGRAG +T V +P ++
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAG-HTGTAVTLVGYDELPKWQL 368
Query: 475 AAEEL 479
+EL
Sbjct: 369 INDEL 373
>gi|38233323|ref|NP_939090.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae NCTC 13129]
gi|376242357|ref|YP_005133209.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
CDCE 8392]
gi|38199582|emb|CAE49235.1| Putative ATP-dependent RNA helicase [Corynebacterium diphtheriae]
gi|372105599|gb|AEX71661.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
CDCE 8392]
Length = 436
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 211/365 (57%), Gaps = 15/365 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + G++ F IQ +T + LDG DL+G+ARTG GKT F +P+++ + + A+
Sbjct: 19 ITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFD----AA 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P LV++PTRELA QV +D + + +T +YGG PY Q +L+ G+D
Sbjct: 75 DVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D +RGN+ L + VLDEADEML +GF D+E +L + + QT+L
Sbjct: 135 VVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
FSAT+P V ++ F+ + G + AST ++ +S V I++
Sbjct: 193 FSATMPGAVVTLARTFMHHPVHIRAEDTGAAQTHASTT--QVIFQAHRMDKSAVTARILQ 250
Query: 359 CYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTLAGFRSGKFMTLV 414
G+TIIF TK +A++LAD L G R +HGD+ QS RE +L FR+GK LV
Sbjct: 251 A-EGRGKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILV 309
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS 474
AT+VAARGLDI+DV +I + P D Y+HR GRTGRAG +T V +P ++
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAG-HTGTAVTLVGYDELPKWQL 368
Query: 475 AAEEL 479
+EL
Sbjct: 369 INDEL 373
>gi|375290383|ref|YP_005124923.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
241]
gi|376245216|ref|YP_005135455.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
HC01]
gi|376250808|ref|YP_005137689.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
HC03]
gi|376292769|ref|YP_005164443.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
HC02]
gi|371580054|gb|AEX43721.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
241]
gi|372107846|gb|AEX73907.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
HC01]
gi|372110092|gb|AEX76152.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
HC02]
gi|372112312|gb|AEX78371.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
HC03]
Length = 436
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 211/365 (57%), Gaps = 15/365 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + G++ F IQ +T + LDG DL+G+ARTG GKT F +P+++ + + A+
Sbjct: 19 ITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFD----AA 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P LV++PTRELA QV +D + + +T +YGG PY Q +L+ G+D
Sbjct: 75 DVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D +RGN+ L + VLDEADEML +GF D+E +L + + QT+L
Sbjct: 135 VVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
FSAT+P V ++ F+ + G + AST I+ +S V +++
Sbjct: 193 FSATMPGAVVTLARTFMHQPVHIRAEDTGAAQTHASTT--QIIFQAHRMDKSAVTARVLQ 250
Query: 359 CYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTLAGFRSGKFMTLV 414
G+TIIF TK +A++LAD L G R +HGD+ QS RE +L FR+GK LV
Sbjct: 251 A-EGRGKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILV 309
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS 474
AT+VAARGLDI+DV +I + P D Y+HR GRTGRAG +T V +P ++
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAG-HTGTAVTLVGYDELPKWQL 368
Query: 475 AAEEL 479
+EL
Sbjct: 369 INDEL 373
>gi|376247986|ref|YP_005139930.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
HC04]
gi|376256619|ref|YP_005144510.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
VA01]
gi|376287203|ref|YP_005159769.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
BH8]
gi|371584537|gb|AEX48202.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
BH8]
gi|372114554|gb|AEX80612.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
HC04]
gi|372119136|gb|AEX82870.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
VA01]
Length = 436
Score = 245 bits (625), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 211/365 (57%), Gaps = 15/365 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + G++ F IQ +T + LDG DL+G+ARTG GKT F +P+++ + + A+
Sbjct: 19 ITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFD----AA 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P LV++PTRELA QV +D + + +T +YGG PY Q +L+ G+D
Sbjct: 75 DVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D +RGN+ L + VLDEADEML +GF D+E +L + + QT+L
Sbjct: 135 VVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
FSAT+P V ++ F+ + G + AST I+ +S V +++
Sbjct: 193 FSATMPGAVVTLARTFMHQPVHIRAEDTGAAQTHASTT--QIIFQAHRMDKSAVTARVLQ 250
Query: 359 CYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTLAGFRSGKFMTLV 414
G+TIIF TK +A++LAD L G R +HGD+ QS RE +L FR+GK LV
Sbjct: 251 A-EGRGKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILV 309
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS 474
AT+VAARGLDI+DV +I + P D Y+HR GRTGRAG +T V +P ++
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAG-HTGTAVTLVGYDELPKWQL 368
Query: 475 AAEEL 479
+EL
Sbjct: 369 INDEL 373
>gi|319787505|ref|YP_004146980.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
gi|317466017|gb|ADV27749.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
11-1]
Length = 616
Score = 245 bits (625), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 144/341 (42%), Positives = 198/341 (58%), Gaps = 21/341 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
PL L + G E+ PIQA T +L G D++G A+TG GKT AF LPIL L K
Sbjct: 22 PLLAALTAVGYETPSPIQAATIPALLSGRDVLGTAQTGTGKTAAFALPILSHLD---LKL 78
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
++ P LVL PTRELA QV E F Y + G +YGG Y Q L++G
Sbjct: 79 AR-------PQALVLAPTRELAIQVAEAFQRYAVQMPGFQVLPIYGGQGYGPQLHALRRG 131
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGR+ DH+ERG +DLS L+ VLDEADEMLRMGF++DVE +L KV D +V
Sbjct: 132 VHVVVGTPGRVIDHLERGTLDLSGLRNLVLDEADEMLRMGFIDDVEAVLKKVPDERQVA- 190
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P ++ I+ +L ++ +++ K S N+R S + + I+
Sbjct: 191 -LFSATMPPPIRRIAQTYL---REPVEVTIASKTTTSANIRQRYWFVSGMHKLDALTRIL 246
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
I+F TK + +LA+ L A A++GD+QQ QRE T+ + G+ L
Sbjct: 247 EAEPFDA-MIVFARTKAATEELANKLQARGVAAAAINGDMQQQQRERTIQQLKDGRLDVL 305
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 306 VATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 346
>gi|344942485|ref|ZP_08781772.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344259772|gb|EGW20044.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 596
Score = 245 bits (625), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 143/342 (41%), Positives = 203/342 (59%), Gaps = 23/342 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ LK G E+ PIQA T ++L G D++G+A+TG GKT AF LPIL
Sbjct: 19 PVLRALKDVGYETPSPIQAQTIPLLLQGKDVLGQAQTGTGKTAAFALPIL---------- 68
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
S+ + P VLVL PTRELA QV E F Y + G +YGG Y Q +LK+G
Sbjct: 69 SRIDLKQKDPQVLVLAPTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYTTQLRQLKRG 128
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DH+ +G ++L L F VLDEADEMLRMGF++DVE IL ++ + K Q
Sbjct: 129 AHVVVGTPGRVMDHMRKGTLNLKGLGFLVLDEADEMLRMGFIDDVEWILDQIPE--KRQI 186
Query: 298 LLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
LFSAT+PS ++ I+ ++L + + TI + ++ N+R S + + I
Sbjct: 187 ALFSATMPSVIRKIAQQYLNEPEHITIKVT----TASAENIRQRYWLVSGVHKLDALTRI 242
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMT 412
+ + G IIF TK S +LA+ L A A++GD+ Q+ RE +A ++GK
Sbjct: 243 LEAETFDG-MIIFVRTKTSTVELAEKLEARGYSAAAINGDMSQALRERAIANLKNGKLDI 301
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
L+AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 302 LIATDVAARGLDVDRITHVVNYDIPYDTESYVHRIGRTGRAG 343
>gi|71731612|gb|EAO33673.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal [Xylella fastidiosa Ann-1]
Length = 609
Score = 245 bits (625), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 143/332 (43%), Positives = 196/332 (59%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L G D++G+A+TG GKT AF LP+L K
Sbjct: 28 GYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK---------- 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F Y ++ G +YGG Y Q LK+G+ V++GTPG
Sbjct: 78 PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIVGTPG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS LK VLDEADEMLRMGF+EDVE +L K+ + +V LFSAT+P
Sbjct: 138 RVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA--LFSATMPP 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +L+ I++ K + N+R S + + I+ +
Sbjct: 196 QIRRIAQTYLQD---PIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDA-M 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA+ L A A++GD+QQ+QRE T+ + GK LVAT+VAARG
Sbjct: 252 IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P DVE+Y+HR GRTGRAG
Sbjct: 312 LDVERISHVLNYDIPYDVESYVHRIGRTGRAG 343
>gi|383828834|ref|ZP_09983923.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
gi|383461487|gb|EID53577.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
Length = 545
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 210/360 (58%), Gaps = 18/360 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L + GIE F IQA+T + L G D++G+ARTG GKTL F +P+L+ L G
Sbjct: 28 LDASGIERAFDIQALTLPIALSGEDVIGQARTGTGKTLGFGVPLLQRLA--------LPG 79
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QV +D G +G+ +YGG PY +Q L+ G+DVVIG
Sbjct: 80 DG-TPQALVVVPTRELCVQVSQDLQKAGKHLGVRIASIYGGRPYESQIKSLRDGVDVVIG 138
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ ++ LS + VLDEADEML +GF+ D+E IL V + K QT+LFSAT
Sbjct: 139 TPGRLLDLAEQRHLVLSKVATLVLDEADEMLDLGFLPDIERILRMVPE--KRQTMLFSAT 196
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL+ I +E V S + +++ +++ S
Sbjct: 197 MPGPILTLARTFLRQPTH-IRAEDHEASAVHERTTQFVYRSHSLDKPELVAKVLQAESR- 254
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 255 GLTMIFTRTKRTAQKVADDLTERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVA 314
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEEL 479
ARG+D++DV ++ + P D + Y+HR GRTGRAG + IT V +P +K ++EL
Sbjct: 315 ARGIDVDDVTHVVNYQTPEDEKTYVHRIGRTGRAG-KTGVAITLVDWDELPRWKLISDEL 373
>gi|15836857|ref|NP_297545.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
gi|9105065|gb|AAF83065.1|AE003878_13 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
Length = 614
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 143/332 (43%), Positives = 196/332 (59%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L G D++G+A+TG GKT AF LP+L K
Sbjct: 34 GYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK---------- 83
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F Y ++ G +YGG Y Q LK+G+ V++GTPG
Sbjct: 84 PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIVGTPG 143
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS LK VLDEADEMLRMGF+EDVE +L K+ + +V LFSAT+P
Sbjct: 144 RVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA--LFSATMPP 201
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +L+ I++ K + N+R S + + I+ +
Sbjct: 202 QIRRIAQTYLQD---PIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDA-M 257
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA+ L A A++GD+QQ+QRE T+ + GK LVAT+VAARG
Sbjct: 258 IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARG 317
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P DVE+Y+HR GRTGRAG
Sbjct: 318 LDVERISHVLNYDIPYDVESYVHRIGRTGRAG 349
>gi|325068259|ref|ZP_08126932.1| DEAD/DEAH box helicase domain protein [Actinomyces oris K20]
Length = 507
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 223/373 (59%), Gaps = 14/373 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + E L +KGI FPIQA+T + L+G D++G+A+TG GKTL F +P+L ++L
Sbjct: 75 FGVEPEICEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLG 134
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + G +P LV+LPTRELAKQV E+ + +YGG Y Q
Sbjct: 135 PGEEGWDEDPASG-SPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIE 193
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +VV+GTPGR+ D +ERG +DL+ + VLDEADEML +GF+ DVE IL + A
Sbjct: 194 DLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTR-A 252
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
++ T+LFSAT+P V ++ +++ + G+E M T V+ +V S + +
Sbjct: 253 DR-HTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQT-VQQVVYRTHSMNKVE 310
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGFR 406
V+ I++ GRTIIF TK +A+++AD L AR ALHGD+ Q RE L FR
Sbjct: 311 VVSRILQAEGR-GRTIIFARTKRTAARVADDL-RARGFATGALHGDLGQGAREQALRAFR 368
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD 466
+ K LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG + +T V
Sbjct: 369 NNKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAG-NSGTAVTFVDW 427
Query: 467 SVIPAFKSAAEEL 479
+P ++ A+ L
Sbjct: 428 DDVPRWRIIAKAL 440
>gi|182680762|ref|YP_001828922.1| DEAD/DEAH box helicase [Xylella fastidiosa M23]
gi|386084282|ref|YP_006000564.1| DEAD/DEAH box helicase domain-containing protein [Xylella
fastidiosa subsp. fastidiosa GB514]
gi|182630872|gb|ACB91648.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
gi|307579229|gb|ADN63198.1| DEAD/DEAH box helicase domain-containing protein [Xylella
fastidiosa subsp. fastidiosa GB514]
Length = 609
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 143/332 (43%), Positives = 196/332 (59%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L G D++G+A+TG GKT AF LP+L K
Sbjct: 28 GYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK---------- 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F Y ++ G +YGG Y Q LK+G+ V++GTPG
Sbjct: 78 PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIVGTPG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS LK VLDEADEMLRMGF+EDVE +L K+ + +V LFSAT+P
Sbjct: 138 RVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA--LFSATMPP 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +L+ I++ K + N+R S + + I+ +
Sbjct: 196 QIRRIAQTYLQD---PIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDA-M 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA+ L A A++GD+QQ+QRE T+ + GK LVAT+VAARG
Sbjct: 252 IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P DVE+Y+HR GRTGRAG
Sbjct: 312 LDVERISHVLNYDIPYDVESYVHRIGRTGRAG 343
>gi|345876610|ref|ZP_08828376.1| thioesterase superfamily protein [endosymbiont of Riftia pachyptila
(vent Ph05)]
gi|344226322|gb|EGV52659.1| thioesterase superfamily protein [endosymbiont of Riftia pachyptila
(vent Ph05)]
Length = 628
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 144/344 (41%), Positives = 200/344 (58%), Gaps = 21/344 (6%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ + L G ES PIQ + +L+G DL+G+A+TG GKT AF LP+L +
Sbjct: 18 LSEPIMQALADVGYESPSPIQQASIPPLLEGKDLLGQAQTGTGKTAAFALPLLSRI---- 73
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
S+KT P LVL PTRELA QV E Y + G +YGG PY Q +L
Sbjct: 74 -DLSRKT-----PQFLVLAPTRELAIQVAEAMQSYARHIKGFHVLPIYGGQPYDHQLRQL 127
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G+ VV+GTPGR+ DHI RG + L +L VLDEADEMLRMGF++DVE IL +
Sbjct: 128 RRGVQVVVGTPGRVMDHIRRGTLKLDNLDALVLDEADEMLRMGFIDDVEWILEQTPQTR- 186
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+PS ++ ++ + L +D I + K +T +R S + +
Sbjct: 187 -QIALFSATMPSIIRKVAQRHL-NDPTEIKIAA--KTSTATTIRQRYWQVSGLHKLDALT 242
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I+ C S ++F TK + +LA+ L + AL+GDI Q QRE T+ F++G+
Sbjct: 243 RILECESFDA-MLVFVRTKIATVELAEKLEARGYASEALNGDIPQKQRERTVERFKAGRL 301
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG
Sbjct: 302 DILVATDVAARGLDVERISHVINYDIPYDTESYVHRIGRTGRAG 345
>gi|345862983|ref|ZP_08815196.1| DEAD/DEAH box helicase-like protein [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345125866|gb|EGW55733.1| DEAD/DEAH box helicase-like protein [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 606
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 145/355 (40%), Positives = 203/355 (57%), Gaps = 21/355 (5%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
++ P +S P+ + L G ES PIQ + +L+G DL+G+A+TG GKT AF
Sbjct: 3 TDSPIPFDSLGLSEPIMQALADVGYESPSPIQQASIPPLLEGKDLLGQAQTGTGKTAAFA 62
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYG 223
LP+L + S+KT P LVL PTRELA QV E Y + G +YG
Sbjct: 63 LPLLSRI-----DLSRKT-----PQFLVLAPTRELAIQVAEAMQSYARHIKGFHVLPIYG 112
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G PY Q +L++G+ VV+GTPGR+ DHI RG + L +L VLDEADEMLRMGF++DVE
Sbjct: 113 GQPYDHQLRQLRRGVQVVVGTPGRVMDHIRRGTLKLDNLDALVLDEADEMLRMGFIDDVE 172
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
IL + Q LFSAT+PS ++ ++ + L +D I + K +T +R
Sbjct: 173 WILEQTPQTR--QIALFSATMPSIIRKVAQRHL-NDPTEIKIAA--KTSTATTIRQRYWQ 227
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQRE 399
S + + I+ C S ++F TK + +LA+ L + AL+GDI Q QRE
Sbjct: 228 VSGLHKLDALTRILECESFDA-MLVFVRTKIATVELAEKLEARGYASEALNGDIPQKQRE 286
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
T+ F++G+ LVAT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG
Sbjct: 287 RTVERFKAGRLDILVATDVAARGLDVERISHVINYDIPYDTESYVHRIGRTGRAG 341
>gi|420151175|ref|ZP_14658314.1| DEAD/DEAH box helicase, partial [Actinomyces georgiae F0490]
gi|394772388|gb|EJF51653.1| DEAD/DEAH box helicase, partial [Actinomyces georgiae F0490]
Length = 535
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 144/368 (39%), Positives = 214/368 (58%), Gaps = 10/368 (2%)
Query: 93 PEAGVEEQERGESEHP-NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
PEA + ERG+ + + + F ++ P+ + L+ +GI FPIQA+T LD D++G
Sbjct: 43 PEATPDISERGDEDFSRKSFADFGVTDPIVDALEDQGITHPFPIQALTLGPALDRHDIIG 102
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211
+A+TG GKTL F +P+LE + P L++LPTREL+KQV D
Sbjct: 103 QAKTGTGKTLGFGIPVLEDVIAPDEPGFDDLLNPNNPQALIVLPTRELSKQVASDLRAAA 162
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
+ +YGG + Q LKKG DVV+GTPGR+ D + +G++ LS ++ VLDEAD
Sbjct: 163 KYLSTRIVEIYGGVAFEPQISALKKGADVVVGTPGRLIDLLRQGHLHLSGVETVVLDEAD 222
Query: 272 EMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKM 331
EML +GF+ DVE +L +V + T+LFSAT+P V ++ KF++ +++
Sbjct: 223 EMLDLGFLPDVETLLSRV--PSHRHTMLFSATMPGPVVALARKFMEHPTHIRAQDPDDQH 280
Query: 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR---- 387
+ V+ +V S + +V+ I++ GR +IF TK +A++L + L AR
Sbjct: 281 QTVNTVKQVVYRVHSLNKVEVLARILQA-DGRGRAVIFCRTKRTAARLGEDL-AARGFAV 338
Query: 388 -ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
+LHGD+ Q RE L FR+GK LVAT+VAARG+D++DV +I + P D + YIHR
Sbjct: 339 GSLHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHR 398
Query: 447 SGRTGRAG 454
GRTGRAG
Sbjct: 399 IGRTGRAG 406
>gi|417559517|ref|ZP_12210424.1| Superfamily II DNA and RNA helicase [Xylella fastidiosa EB92.1]
gi|338177845|gb|EGO80883.1| Superfamily II DNA and RNA helicase [Xylella fastidiosa EB92.1]
Length = 609
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 143/332 (43%), Positives = 196/332 (59%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L G D++G+A+TG GKT AF LP+L K
Sbjct: 28 GYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK---------- 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F Y ++ G +YGG Y Q LK+G+ V++GTPG
Sbjct: 78 PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIVGTPG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS LK VLDEADEMLRMGF+EDVE +L K+ + +V LFSAT+P
Sbjct: 138 RVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA--LFSATMPP 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +L+ I++ K + N+R S + + I+ +
Sbjct: 196 QIRRIAQTYLQD---PIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDA-M 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA+ L A A++GD+QQ+QRE T+ + GK LVAT+VAARG
Sbjct: 252 IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P DVE+Y+HR GRTGRAG
Sbjct: 312 LDVERISHVLNYDIPYDVESYVHRIGRTGRAG 343
>gi|71276350|ref|ZP_00652627.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal [Xylella fastidiosa Dixon]
gi|170729445|ref|YP_001774878.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
gi|71162812|gb|EAO12537.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal [Xylella fastidiosa Dixon]
gi|71728863|gb|EAO31000.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal [Xylella fastidiosa Ann-1]
gi|167964238|gb|ACA11248.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
Length = 609
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 143/332 (43%), Positives = 196/332 (59%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L G D++G+A+TG GKT AF LP+L K
Sbjct: 28 GYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK---------- 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F Y ++ G +YGG Y Q LK+G+ V++GTPG
Sbjct: 78 PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIVGTPG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS LK VLDEADEMLRMGF+EDVE +L K+ + +V LFSAT+P
Sbjct: 138 RVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA--LFSATMPP 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +L+ I++ K + N+R S + + I+ +
Sbjct: 196 QIRRIAQTYLQD---PIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDA-M 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA+ L A A++GD+QQ+QRE T+ + GK LVAT+VAARG
Sbjct: 252 IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P DVE+Y+HR GRTGRAG
Sbjct: 312 LDVERISHVLNYDIPYDVESYVHRIGRTGRAG 343
>gi|407648258|ref|YP_006812017.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407311142|gb|AFU05043.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 593
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 147/332 (44%), Positives = 197/332 (59%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L G+D+VG A+TG GKT AF +PIL L G+
Sbjct: 39 GYESPSPIQAATIPPLLSGADVVGLAQTGTGKTAAFAIPILMGLDTS----------GKL 88
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y + GL +YGG Y Q L++G VV+GTPG
Sbjct: 89 PQSLVLAPTRELAIQVAEAFGRYATHIPGLHVLPIYGGQAYGVQLSGLRRGAHVVVGTPG 148
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G +DLS LK+ VLDEADEML+MGF EDVE IL K A K Q LFSAT+P+
Sbjct: 149 RVIDHLEKGTLDLSQLKYLVLDEADEMLKMGFQEDVERIL-KDTPAGK-QVALFSATMPA 206
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS ++L +++ K +TN+ + S + + I+ S
Sbjct: 207 AIRKISKQYLND---PVEITVKSKTSTATNITQRWVQVSHQRKLDALTRILEVESFEA-M 262
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK++ +LA+ L A A++GDI Q+QRE T+ +SG LVAT+VAARG
Sbjct: 263 IIFVRTKQATEELAEKLRARGFSAAAINGDIAQNQRERTIGHLKSGTLDILVATDVAARG 322
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 323 LDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 354
>gi|28198133|ref|NP_778447.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
gi|28056193|gb|AAO28096.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
Length = 615
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/332 (43%), Positives = 196/332 (59%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L G D++G+A+TG GKT AF LP+L K
Sbjct: 34 GYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK---------- 83
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F Y ++ G +YGG Y Q LK+G+ V++GTPG
Sbjct: 84 PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIVGTPG 143
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS LK VLDEADEMLRMGF+EDVE +L K+ + +V LFSAT+P
Sbjct: 144 RVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVA--LFSATMPP 201
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ +L+ I++ K + N+R S + + I+ +
Sbjct: 202 QIRRIAQTYLQD---PIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDA-M 257
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA+ L A A++GD+QQ+QRE T+ + GK LVAT+VAARG
Sbjct: 258 IIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARG 317
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P DVE+Y+HR GRTGRAG
Sbjct: 318 LDVERISHVLNYDIPYDVESYVHRIGRTGRAG 349
>gi|381395882|ref|ZP_09921576.1| ATP-dependent RNA helicase DeaD [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379328447|dbj|GAB56709.1| ATP-dependent RNA helicase DeaD [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 584
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/340 (42%), Positives = 202/340 (59%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + ++ G E PIQA + ++L+G DL+G+A+TG GKT AF LP+L ++ P +A
Sbjct: 18 LLQAVEKVGYEKPSPIQAKSIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI--DPDEAY 75
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGI 238
+ +LVL PTRELA QV E F VY + + +YGG+ Y Q +LK+G+
Sbjct: 76 TQ--------LLVLAPTRELAIQVAEAFQVYASFSKKIRVLPVYGGSSYDNQIRQLKRGV 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGRI DHI+R + L L+F VLDEADEMLRMGF++DVELIL QT
Sbjct: 128 QVVVGTPGRIIDHIKRKTLKLDKLRFLVLDEADEMLRMGFIDDVELILSHAPSTR--QTA 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P +K IS K+L + K + K+ ++ +R + + + + + I+
Sbjct: 186 LFSATMPDQIKKISQKYLNNPKH---VKIESKVSTASTIRQRYVQVAGHHKLETLTRILE 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G I+F TK + +LA+ L AL+GDI Q+ RE T+ + GK LV
Sbjct: 243 IEEFEG-VIVFVRTKTATLELAEKLSARGYDVEALNGDIAQAARERTVERLKQGKIDILV 301
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD+ V +I + P D E+Y+HR GRTGRAG
Sbjct: 302 ATDVAARGLDVERVSHVINYDVPHDTESYVHRVGRTGRAG 341
>gi|429729511|ref|ZP_19264170.1| cold-shock DEAD-box protein A [Corynebacterium durum F0235]
gi|429149535|gb|EKX92513.1| cold-shock DEAD-box protein A [Corynebacterium durum F0235]
Length = 677
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 196/332 (59%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +++DG D+VG A+TG GKT AF LPIL S+ RA
Sbjct: 88 GFETPSPIQAHTIPVLMDGHDVVGLAQTGTGKTAAFALPIL----------SRIDPSVRA 137
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV + F + +G L +YGG Y Q L++G +V+GTPG
Sbjct: 138 PQALVLAPTRELALQVADSFQAFADHLGSLNVLPIYGGQAYGIQLSGLRRGAHIVVGTPG 197
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G++D+S L+F VLDEADEML MGF EDVE IL D +V LFSAT+PS
Sbjct: 198 RVIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDDKQVA--LFSATMPS 255
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ +S ++LK + ++ + + +TN+ L + + + I+
Sbjct: 256 AIRRMSKQYLKDPR---EITVKSETRTNTNITQKFLNVAHRNKLDALTRILEVTEFAA-M 311
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK +LA+ L A A++GDI Q+QRE T+ + G+ LVAT+VAARG
Sbjct: 312 IMFVRTKHETEELAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 371
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 372 LDVERISHVLNYDIPHDTESYVHRIGRTGRAG 403
>gi|418460459|ref|ZP_13031553.1| DNA/RNA helicase, superfamily II, partial [Saccharomonospora azurea
SZMC 14600]
gi|359739435|gb|EHK88301.1| DNA/RNA helicase, superfamily II, partial [Saccharomonospora azurea
SZMC 14600]
Length = 488
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 210/360 (58%), Gaps = 18/360 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L + GIE F IQA+T + L G D++G+ARTG GKTL F +P+L+ L G
Sbjct: 21 LDASGIERTFDIQALTLPLALSGDDVIGQARTGTGKTLGFGVPLLQRLA--------LPG 72
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QV +D + G +G+ +YGG PY +Q L+ G+DVVIG
Sbjct: 73 DG-TPQALVVVPTRELCVQVSQDLENAGKHLGVRIASIYGGRPYESQIKSLRDGVDVVIG 131
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ ++ L + VLDEADEML +GF+ D+E IL V + + QT+LFSAT
Sbjct: 132 TPGRLLDLAEQRHLVLGKVATLVLDEADEMLDLGFLPDIERILRMVPE--QRQTMLFSAT 189
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL+ I NE V S + +++ +++ +
Sbjct: 190 MPGPILTLARTFLRQPTH-IRAEDNEAGAVHERTTQFVYRSHSLDKPELVAKVLQAENR- 247
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 248 GLTMIFTRTKRTAQKVADDLTERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVA 307
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEEL 479
ARG+D++DV +I + P D + Y+HR GRTGRAG + IT V IP +K ++EL
Sbjct: 308 ARGIDVDDVTHVINYQTPEDEKTYVHRIGRTGRAG-KTGVAITLVDWDEIPRWKLISDEL 366
>gi|320095784|ref|ZP_08027429.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
str. F0338]
gi|319977291|gb|EFW08989.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
str. F0338]
Length = 575
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/368 (38%), Positives = 215/368 (58%), Gaps = 10/368 (2%)
Query: 93 PEAGVEEQERGESEHP-NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
PEA + ERG+ + + + F ++ P+ + L+ +GI FPIQA+T LD D++G
Sbjct: 61 PEATPDISERGDEDFSRKSFADFGVTDPIVDALEDQGITHPFPIQALTLGPALDRHDIIG 120
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211
+A+TG GKTL F +P+LE + +P L++LPTREL+KQV D
Sbjct: 121 QAKTGTGKTLGFGIPVLEDVIAPDEPGFDDLLNPNSPQALIVLPTRELSKQVASDLRAAA 180
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
+ +YGG + Q LKKG DVV+GTPGR+ D + +G++ LS ++ VLDEAD
Sbjct: 181 KYLSTRIVEIYGGVAFEPQISALKKGADVVVGTPGRLIDLLRQGHLHLSGVETVVLDEAD 240
Query: 272 EMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKM 331
EML +GF+ DVE +L +V + T+LFSAT+P V ++ KF++ +++
Sbjct: 241 EMLDLGFLPDVETLLSRV--PSHRHTMLFSATMPGPVVALARKFMEHPTHIRAQDPDDQH 298
Query: 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR---- 387
+ V+ +V S + +V+ I++ G R +IF TK +A++L + L AR
Sbjct: 299 QTVNTVKQVVYRVHSLNKVEVLARILQSKGRG-RAVIFCRTKRTAARLGEDL-AARGFAV 356
Query: 388 -ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
+LHGD+ Q RE L FR+GK LVAT+VAARG+D++DV ++ + P D + YIHR
Sbjct: 357 GSLHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDVDDVTHVVNYQCPEDEKIYIHR 416
Query: 447 SGRTGRAG 454
GRTGRAG
Sbjct: 417 IGRTGRAG 424
>gi|400293793|ref|ZP_10795634.1| DEAD/DEAH box helicase [Actinomyces naeslundii str. Howell 279]
gi|399901102|gb|EJN84016.1| DEAD/DEAH box helicase [Actinomyces naeslundii str. Howell 279]
Length = 560
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 150/372 (40%), Positives = 218/372 (58%), Gaps = 12/372 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + E L +KGI FPIQA+T + L+G D++G+A+TG GKTL F +P+L ++L
Sbjct: 72 FGVEPEICEALGAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLG 131
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + G +P LV+LPTRELAKQV E+ + +YGG Y Q
Sbjct: 132 PGEEGWDEDPASG-SPQGLVILPTRELAKQVAEELTTAAAKRTVRIVQVYGGRAYEPQIE 190
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L +G +VV+GTPGR+ D ++RG +DL+ + VLDEADEML +GF+ DVE IL +
Sbjct: 191 DLGRGAEVVVGTPGRLIDLMDRGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTR-- 248
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
T+LFSAT+P V ++ +++ + G+E M T V+ +V S + +
Sbjct: 249 TDRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQT-VQQVVYRTHSMNKVE 307
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ GRTIIF TK +A+++AD L ALHGD+ Q RE L FR+
Sbjct: 308 VVSRILQAEGR-GRTIIFARTKRTAARVADDLRSRGFATAALHGDLGQGAREQALRAFRN 366
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDS 467
GK LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG + +T V
Sbjct: 367 GKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAG-NSGTAVTFVDWD 425
Query: 468 VIPAFKSAAEEL 479
+P ++ A+ L
Sbjct: 426 DVPRWRIIAKAL 437
>gi|419860329|ref|ZP_14382974.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
gi|387983537|gb|EIK57014.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
Length = 436
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 211/365 (57%), Gaps = 15/365 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + G++ F IQ +T + LDG DL+G+ARTG GKT F +P+++ + + A+
Sbjct: 19 ITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFD----AA 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P LV++PTRELA QV +D + + +T +YGG PY Q +L+ G+D
Sbjct: 75 DVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D +RGN+ L + VLDEADEML +GF D+E +L + + QT+L
Sbjct: 135 VVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
FSAT+P V ++ F+ + G + AST ++ +S V +++
Sbjct: 193 FSATMPGAVVTLARTFMHQPVHIRAEDTGAAQTHASTT--QVIFQAHRMDKSAVTARVLQ 250
Query: 359 CYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTLAGFRSGKFMTLV 414
G+TIIF TK +A++LAD L G R +HGD+ QS RE +L FR+GK LV
Sbjct: 251 A-EGRGKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILV 309
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS 474
AT+VAARGLDI+DV +I + P D Y+HR GRTGRAG +T V +P ++
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAG-HTGTAVTLVGYDELPKWQL 368
Query: 475 AAEEL 479
+EL
Sbjct: 369 INDEL 373
>gi|389797680|ref|ZP_10200720.1| DNA/RNA helicase [Rhodanobacter sp. 116-2]
gi|388446754|gb|EIM02774.1| DNA/RNA helicase [Rhodanobacter sp. 116-2]
Length = 609
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 149/376 (39%), Positives = 210/376 (55%), Gaps = 25/376 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L+G D++G+A+TG GKT AF LPIL + P K
Sbjct: 18 LADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRIERRPGK------ 71
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F Y V G +YGG Y Q LK+G+ VV+
Sbjct: 72 ----PQALVLAPTRELAIQVAEAFQTYAAHVPGFQVLPIYGGQSYGPQLHSLKRGVHVVV 127
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+++G +DLS LKF VLDEADEMLRMGF++DVE +L +V LFSA
Sbjct: 128 GTPGRVIDHLDKGTLDLSELKFLVLDEADEMLRMGFIDDVEKVLQATPPGRQV--ALFSA 185
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ + LK+ +++ + N+ S + + I+
Sbjct: 186 TMPAPIRKIAQRHLKN---PVEVTIKAATTTAANIHQRYWFVSGMHKLDALTRILEAEPF 242
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ +LA+ L A A++GDI Q+QRE + + GK LVAT+V
Sbjct: 243 DA-MIIFARTKQATEELAEKLQARGLAAAAINGDIAQAQRERVIQQLKDGKLDILVATDV 301
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD---SVIPAFKSA 475
AARGLD+ + ++ + P D E+Y+HR GRTGRAG + E I VS ++ A + A
Sbjct: 302 AARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG-RSGEAILFVSPRERGMLHAIERA 360
Query: 476 AEELLNNSGLSAAELL 491
+ + L + E++
Sbjct: 361 TRQPIEQMQLPSVEVV 376
>gi|297565173|ref|YP_003684145.1| DEAD/DEAH box helicase [Meiothermus silvanus DSM 9946]
gi|296849622|gb|ADH62637.1| DEAD/DEAH box helicase domain protein [Meiothermus silvanus DSM
9946]
Length = 538
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 145/338 (42%), Positives = 200/338 (59%), Gaps = 18/338 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI---LESLTNGPTKASK 180
L++KG + IQA + L+G D++G+ARTG GKTLAF LPI LE+ G ++ +
Sbjct: 16 LEAKGFTTPTAIQAQAIPLALEGRDVLGQARTGTGKTLAFALPIAHKLEAPFRGDSRVAS 75
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
+ GR P +L PTRELA QV + A L +YGG Y +Q L++G DV
Sbjct: 76 RQ-RGRPPRAFILTPTRELALQVAGELAWV--APHLHVLPIYGGTGYGSQAEGLRRGADV 132
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+ TPGR D++ +G +DLS ++ VLDEADEML MGF EDVE +LG + QT LF
Sbjct: 133 VVATPGRAIDYLNQGILDLSHVEIAVLDEADEMLSMGFEEDVEKLLGATPASR--QTFLF 190
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+PSW K ++ ++++ D +++V +E++ + + L R + D+I Y
Sbjct: 191 SATVPSWAKRLAERYMR-DPVHVNVVKDEQV----SYEELALQAPLQTRLNTLTDVIFAY 245
Query: 361 SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+ RTI+FT TK +LA L GA +HGD+ Q +RE L FR G LVAT
Sbjct: 246 APE-RTIVFTRTKAEVDELATGLQARGIGAAPIHGDMSQRERERVLGRFREGTDTVLVAT 304
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLDI +V L++ P E Y HRSGRTGRAG
Sbjct: 305 DVAARGLDIPEVDLVVHFRLPEKAEPYQHRSGRTGRAG 342
>gi|227497408|ref|ZP_03927640.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
gi|226833084|gb|EEH65467.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
Length = 557
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 220/373 (58%), Gaps = 14/373 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + + L KGI FPIQA+T + LDG D++G+A+TG GKTL F +P+L ++L
Sbjct: 65 FGVEPEISQALADKGIIHPFPIQALTLPVALDGRDVIGQAKTGTGKTLGFGIPLLMDTLG 124
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + G +P LV+LPTRELAKQV + + +YGG Y Q
Sbjct: 125 PGEEGWDEDPASG-SPQALVVLPTRELAKQVATELAQAAAKRTVRIVQVYGGRAYEPQIE 183
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L+KG +VV+GTPGR+ D +ERG + L + VLDEADEML +GF+ DVE IL +
Sbjct: 184 ALEKGAEVVVGTPGRLIDLMERGVLSLEHVTTVVLDEADEMLDLGFLPDVEKILARTRPD 243
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
QT+LFSAT+P V ++ +++ K G+E M T+V+ +V + + +
Sbjct: 244 R--QTMLFSATMPGAVVALARRYMSKPTHIRAQDPGDESMTV-TSVKQVVYRTHALNKVE 300
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGFR 406
V+ I++ G RTIIFT TK +A+++A+ L G+R ALHGD+ Q RE L FR
Sbjct: 301 VVSRILQARGRG-RTIIFTRTKRTAARVAEDL-GSRGFATAALHGDLGQGAREQALRAFR 358
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD 466
GK LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG + +T V
Sbjct: 359 HGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAG-HSGTAVTFVDW 417
Query: 467 SVIPAFKSAAEEL 479
+P ++ A+ L
Sbjct: 418 DDVPRWRLIAKAL 430
>gi|376289872|ref|YP_005162119.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae C7
(beta)]
gi|372103268|gb|AEX66865.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae C7
(beta)]
Length = 436
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 211/365 (57%), Gaps = 15/365 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + G++ F IQ +T + LDG DL+G+ARTG GKT F +P+++ + + A+
Sbjct: 19 ITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFD----AA 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P LV++PTRELA QV +D + + +T +YGG PY Q +L+ G+D
Sbjct: 75 DVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYDEQIAQLESGVD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D +RGN+ L + VLDEADEML +GF D+E +L + + QT+L
Sbjct: 135 VVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
FSAT+P V ++ F+ + G + AST ++ +S V +++
Sbjct: 193 FSATMPGAVVTLARTFMHQPVHIRAEDTGAAQTHASTT--QVIFQAHRMDKSAVTARVLQ 250
Query: 359 CYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTLAGFRSGKFMTLV 414
G+TIIF TK +A++LAD L G R +HGD+ QS RE +L FR+GK LV
Sbjct: 251 A-EGRGKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILV 309
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS 474
AT+VAARGLDI+DV +I + P D Y+HR GRTGRAG +T V +P ++
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAG-HTGTAVTLVGYDELPKWQL 368
Query: 475 AAEEL 479
+EL
Sbjct: 369 INDEL 373
>gi|78213173|ref|YP_381952.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
gi|78197632|gb|ABB35397.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
Length = 607
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 150/347 (43%), Positives = 201/347 (57%), Gaps = 23/347 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S L L KG PIQ F ++ G DLVG+A+TG GKT AF LP+LE L +
Sbjct: 62 FGFSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLES 121
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLYGGAPYHAQEF 232
G +KT P LVL PTRELA QV E F Y G L +YGG + +Q
Sbjct: 122 G-----QKT-----PQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQIS 171
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G+DVV+GTPGR+ DH+ +G +D S L+ VLDEADEMLRMGF++DVE IL ++ +
Sbjct: 172 ALRRGVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQ 231
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-Q 351
+V +LFSAT+P ++ +S ++LK D + + ++ R I +P + Q
Sbjct: 232 RQV--VLFSATMPPEIRRLSKRYLK-DPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQ 288
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRS 407
+ D C S G IIF TK +A+ L L+GD+ Q+QRE T+ RS
Sbjct: 289 RVLDA--CGSEG--VIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRS 344
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G LVAT+VAARGLD+ + L+I + P D EAY+HR GRTGRAG
Sbjct: 345 GSVDILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAG 391
>gi|429757621|ref|ZP_19290153.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
gi|429174759|gb|EKY16228.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
Length = 564
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/405 (35%), Positives = 227/405 (56%), Gaps = 12/405 (2%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
E+ + + F +S P+ + L+ +GI FPIQA+T + LD D++G+A+TG GKTL F
Sbjct: 57 ETYEAKSFADFGVSDPIVDALEERGITHPFPIQALTLPVALDRHDIIGQAKTGTGKTLGF 116
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+P+LE + + + P L++LPTREL KQV +D + +YG
Sbjct: 117 GIPVLEDVIAPDEEGYEDLLNPNMPQALIILPTRELTKQVADDLRAAASKLSTRIVDIYG 176
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G + Q LK+G D+V+GTPGR+ D + +G + L+ ++ VLDEADEML +GF+ DVE
Sbjct: 177 GVAFEPQIEALKRGADIVVGTPGRLIDLLRQGVLHLNGVENVVLDEADEMLDLGFLPDVE 236
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
+L ++ A++ +LFSAT+P V ++ KF+ +++ + V+ ++
Sbjct: 237 TLLSRIP-ADR-HMMLFSATMPGPVITLARKFMTQPTHIRAQDPDDQGQTVNTVQQVIYR 294
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQRE 399
+ +++V+ I++ GR +IF TK +A+++AD L ALHGD+ Q RE
Sbjct: 295 THAMNKTEVVARILQARGR-GRAVIFCRTKRAAARVADELTERGFAVAALHGDLGQGARE 353
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAE 459
L FR+GK LVAT+VAARG+D++DV +I + P D + YIHR GRTGRAG +
Sbjct: 354 QALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKVYIHRIGRTGRAG-NSGT 412
Query: 460 TITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEI 504
+T V +P + ++ L GL E L YT++
Sbjct: 413 AVTFVDWDDVPRWSLISKAL----GLGVPEPLETYHTSPHLYTDL 453
>gi|317124106|ref|YP_004098218.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
gi|315588194|gb|ADU47491.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
Length = 605
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/332 (44%), Positives = 195/332 (58%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E PIQA T +L+G D+VG A+TG GKT AF LPIL L +KT
Sbjct: 45 GYEHPSPIQAATIPAMLEGRDVVGLAQTGTGKTAAFALPILARL-----DLKQKT----- 94
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F+ Y + G+ +YGG Y Q L++G+ VV+GTPG
Sbjct: 95 PQALVLAPTRELALQVCEAFERYAANLRGVHVLPVYGGQGYGVQLSALRRGVHVVVGTPG 154
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
RI DH+E+G +DLS L+F VLDEADEML+MGF EDVE IL A+K Q LFSAT+P+
Sbjct: 155 RIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTP-ADK-QVALFSATMPA 212
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS + L +++ K + N+ L S + + I+ + G
Sbjct: 213 QIRRISKQHLTD---PVEITVKAKTTTAPNITQRYLIVSYPQKVDALTRILEVENFEG-M 268
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK LA+ L A A++GDI Q+QRE T+ RSGK LVAT+VAARG
Sbjct: 269 IVFVRTKNETETLAEKLRARGFSAAAINGDIVQAQRERTVDQLRSGKLDILVATDVAARG 328
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 329 LDVERISHVVNFDIPTDTESYVHRIGRTGRAG 360
>gi|373252926|ref|ZP_09541044.1| DNA/RNA helicase [Nesterenkonia sp. F]
Length = 543
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 146/374 (39%), Positives = 212/374 (56%), Gaps = 12/374 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + L+ KGI + FPIQA T + L GSD++G+A+TG GKTL F +P L+ +T
Sbjct: 27 FAVRPEIVAALEEKGIVTPFPIQAETLPIALGGSDIIGQAKTGTGKTLGFGIPALQRVTT 86
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
AP L++ PTRELA QV ED V G G +YGG Y Q +
Sbjct: 87 PDDAGFDGMEAPGAPQALIVTPTRELAVQVAEDIKVAGAQRGARVATIYGGRAYEPQIEE 146
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L++G+++V+GTPGR+ D + + L ++ VLDEADEML +GF+ DVE IL V +
Sbjct: 147 LQRGVEIVVGTPGRLIDLHRQRYLKLKNINIVVLDEADEMLDLGFLPDVEKILSAVPEIG 206
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
+ QT+LFSAT+P V ++ +++ ++ ++R ++ + +VI
Sbjct: 207 R-QTMLFSATMPGPVVSMARRYMTKPTHIRAADPADEGVTKKDIRQVIYRAHQLDKDEVI 265
Query: 354 PDIIRCYSSGGRTIIFTETKESASQL-ADLLP---GARALHGDIQQSQREVTLAGFRSGK 409
I++ GRTIIFT TK A +L A+L+ A A+HGD+ Q RE L FR+ K
Sbjct: 266 ARILQAEGR-GRTIIFTRTKRQADKLSAELISRGFAAGAIHGDLGQGAREQALRAFRTEK 324
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVI 469
LVAT+VAARG+D+ DV +I P D +AY+HR GRTGRAG + +T V +
Sbjct: 325 IDVLVATDVAARGIDVTDVTHVINLTAPEDEKAYLHRIGRTGRAG-QKGTAVTFVDWQDV 383
Query: 470 PAFKSAAEELLNNS 483
P +K L+NN+
Sbjct: 384 PRWK-----LINNA 392
>gi|300783035|ref|YP_003763326.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
gi|384146259|ref|YP_005529075.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
gi|399534921|ref|YP_006547583.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
gi|299792549|gb|ADJ42924.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
gi|340524413|gb|AEK39618.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
gi|398315691|gb|AFO74638.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
Length = 598
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 158/390 (40%), Positives = 219/390 (56%), Gaps = 23/390 (5%)
Query: 94 EAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
+AGVE E E+P S F + + + L GIE F IQ +T + + G DL+G+A
Sbjct: 64 QAGVEV----EPENPTFAS-FGVKPEIVKALGEAGIERTFAIQELTLPLAMAGDDLIGQA 118
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
RTG GKTL F +P+L + + G G P VLV++PTREL QV D G
Sbjct: 119 RTGMGKTLGFGVPLLHRV--------QVPGDG-TPQVLVVVPTRELCIQVANDLKGAGKH 169
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
+G+ + +YGG PY Q L+KGIDVVIGTPGR+ D E+ ++ L ++ VLDEADEM
Sbjct: 170 LGIRTLAIYGGRPYEPQIEALRKGIDVVIGTPGRLLDLAEQQHLVLGKVRGLVLDEADEM 229
Query: 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
L +GF+ D+E IL V D QT+LFSAT+P + ++ FL+ I N+
Sbjct: 230 LDLGFLPDIERILRMVPDER--QTMLFSATMPGPIITLARTFLRQPTH-IRAEENDASAI 286
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARAL 389
V S + +VI +++ G T+IF+ TK +A ++AD L A A+
Sbjct: 287 HERTTQFVYRAHSMDKPEVIARVLQAEDR-GLTMIFSRTKRTAQKVADDLVERGFAAAAV 345
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGD+ Q RE L FRSGK LVAT+VAARG+DI+DV +I + P D + Y+HR GR
Sbjct: 346 HGDLGQGAREQALRAFRSGKVDVLVATDVAARGIDIDDVTHVINYQCPDDEKTYVHRIGR 405
Query: 450 TGRAGVEAAETITQVSDSVIPAFKSAAEEL 479
TGRAG +T V +P +K ++ L
Sbjct: 406 TGRAG-RTGVAVTLVDWDEMPRWKLISDTL 434
>gi|320533118|ref|ZP_08033850.1| DEAD/DEAH box helicase, partial [Actinomyces sp. oral taxon 171
str. F0337]
gi|320134690|gb|EFW26906.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 471
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 218/372 (58%), Gaps = 12/372 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + E L +KGI FPIQA+T + L+G D++G+A+TG GKTL F +P+L ++L
Sbjct: 75 FDVEPEICEALSAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLG 134
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + G +P L++LPTRELAKQV E+ + +YGG Y Q
Sbjct: 135 PGEEGWDEDPASG-SPQALIILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIE 193
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +VV+GTPGR+ D +ERG +DL+ + VLDEADEML +GF+ DVE IL +
Sbjct: 194 DLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTR-- 251
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
T+LFSAT+P V ++ +++ + G+E M T V+ +V S + +
Sbjct: 252 TDRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQT-VQQVVYRTHSMNKVE 310
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ GRTIIF TK +A+++AD L ALHGD+ Q RE L FR+
Sbjct: 311 VVSRILQAEGR-GRTIIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRN 369
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDS 467
K LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG + +T V
Sbjct: 370 SKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAG-NSGTAVTFVDWD 428
Query: 468 VIPAFKSAAEEL 479
+P ++ A+ L
Sbjct: 429 DVPRWRIIAKAL 440
>gi|257068313|ref|YP_003154568.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
gi|256559131|gb|ACU84978.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
Length = 582
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/347 (40%), Positives = 204/347 (58%), Gaps = 12/347 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE-SLT 172
F + + E L +KGI + FPIQ++T + L G D++G+A+TG GKTL F +P+L+ S+
Sbjct: 36 FDVRTDIVEALAAKGITTPFPIQSLTLPVALRGRDIIGQAKTGTGKTLGFGIPLLQNSVA 95
Query: 173 NG-PTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
G P A + G P LV+LPTRELA QV D + + +YGG Y Q
Sbjct: 96 PGEPNPADRPIG---TPQALVVLPTRELAVQVAHDLETASAKRPIRILTVYGGRAYEPQI 152
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L+KG++VV+GTPGR+ D + + +DLS ++ VLDEADEML +GF+ED+E +L V
Sbjct: 153 EALEKGVEVVVGTPGRLIDLMRQKYLDLSQVRTAVLDEADEMLDLGFLEDIEKLLQAV-- 210
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
K QT+LFSAT+P + ++ +F+K ++ + +++ +V + +
Sbjct: 211 PVKRQTMLFSATMPGPIMALARRFMKQPTHIRAHDPGDESRTKADIKQVVYRAHQLDKIE 270
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQ----LADLLPGARALHGDIQQSQREVTLAGFRS 407
V+ I++ G +IIF TK A + LAD A LHGD+ Q RE L FRS
Sbjct: 271 VMARILQARGR-GLSIIFMRTKRQADRVAGDLADRGFAAAPLHGDLGQGAREQALRAFRS 329
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
GK LVAT+VAARG+D+ DV ++ P D + Y+HR+GRTGRAG
Sbjct: 330 GKIDVLVATDVAARGIDVTDVTHVVNWNCPDDDKTYLHRTGRTGRAG 376
>gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
Length = 607
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/346 (41%), Positives = 205/346 (59%), Gaps = 21/346 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S L L+ KG + PIQ F ++ G DLVG+A+TG GKT AF LP+LE L
Sbjct: 62 FGFSEALLRTLEEKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLE- 120
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEF 232
G P VLVL PTRELA QV + F Y G L +YGG+ + +Q
Sbjct: 121 ---------GRSSKPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIH 171
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
LK+G+DVV+GTPGR+ DH+ +G +D + L+ VLDEADEMLRMGF++DVE IL ++ +
Sbjct: 172 TLKRGVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEE 231
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+V +LFSAT+P+ ++ +S ++L ++ ++ K + + +R + +S + +
Sbjct: 232 RQV--VLFSATMPNEIRRLSKRYL---QEPAEITIKTKDREAKRIRQRSITMQNSHKIEA 286
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSG 408
+ ++ + G IIF TK +A+ L A L+GD+ Q+QRE T+ R G
Sbjct: 287 LNRVLEAVTGEG-VIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKG 345
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG
Sbjct: 346 TVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAG 391
>gi|452952010|gb|EME57445.1| ATP-dependent RNA helicase [Amycolatopsis decaplanina DSM 44594]
Length = 530
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 152/357 (42%), Positives = 205/357 (57%), Gaps = 22/357 (6%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
E E P S F + + + L GIE F IQA+T + + G DL+G+ARTG GKTL F
Sbjct: 2 EPESPTFAS-FGVKPEIVKALGEAGIERTFAIQALTLPLAMAGDDLIGQARTGMGKTLGF 60
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+P+L + + G G P VLV++PTREL QV D G +G+ + +YG
Sbjct: 61 GVPLLHRV--------EVPGDG-TPQVLVVVPTRELCVQVANDLKGAGKHLGIRTLAIYG 111
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G PY Q L+KG+DVVIGTPGR+ D E+ ++ L ++ VLDEADEML +GF+ D+E
Sbjct: 112 GRPYEPQIEALRKGVDVVIGTPGRLLDLAEQKHLVLGKVRGLVLDEADEMLDLGFLPDIE 171
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
IL V D K QT+LFSAT+P + ++ FL + I N+ V
Sbjct: 172 RILRMVPD--KRQTMLFSATMPGPIITLARTFL-TQPTHIRAEENDAGAIHERTTQFVYR 228
Query: 344 CSSSARSQVIPDIIRCYSSGGR--TIIFTETKESASQLADLLP----GARALHGDIQQSQ 397
S + ++ I R + GR T+IFT TK +A ++AD L A A+HGD+ Q
Sbjct: 229 AHSMDKPEL---IARALQAEGRGLTMIFTRTKRTAQKVADELVERGFAAAAVHGDLGQGA 285
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RE L FRSGK LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG
Sbjct: 286 REQALRAFRSGKVDVLVATDVAARGIDIDDVTHVINYQTPEDEKTYVHRIGRTGRAG 342
>gi|385653332|ref|ZP_10047885.1| superfamily II DNA and RNA helicase, partial [Leucobacter
chromiiresistens JG 31]
Length = 608
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 214/365 (58%), Gaps = 23/365 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ IQA T +L+G+D+VG A+TG GKT AF LPIL +T G
Sbjct: 37 GYETPSAIQAATIPTLLEGADVVGLAQTGTGKTAAFALPILSRITPGQG----------V 86
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F+ Y + +YGG Y Q L++G+D+V+GTPG
Sbjct: 87 PQALVLAPTRELALQVCEAFESYAAHLPEVHLLPVYGGQAYGQQLSALRRGVDIVVGTPG 146
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
RI DH++RG++DL+ +K+ VLDEADEML+MGF EDVE IL + + Q LFSAT+P+
Sbjct: 147 RIMDHLKRGSLDLTQIKYLVLDEADEMLKMGFAEDVETILA--DTPQEKQVALFSATMPA 204
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS ++L +D + I + G + ++ R+ V+ S + + + I+
Sbjct: 205 QIRRISQQYL-NDPREIKIAGKTQTSSTITQRYNVV--SYTQKLDALTRILEVEDFDA-M 260
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+FT T+ + Q+A+ L A A++GDI Q+QRE T+ + GK LVAT+VAARG
Sbjct: 261 IVFTRTRGDSEQVAEKLRARGYSAAAINGDIPQAQRERTVQSLKDGKLDILVATDVAARG 320
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV--EAAETITQVSDSVIPAFKSAAEELL 480
LD+ + ++ + P D E+Y+HR GRTGRAG +A +T ++ A + A ++ L
Sbjct: 321 LDVERISHVLNYDLPIDTESYVHRIGRTGRAGRTGDAISFVTPREQRLLKAIEKATKQPL 380
Query: 481 NNSGL 485
L
Sbjct: 381 TQMPL 385
>gi|383316474|ref|YP_005377316.1| DNA/RNA helicase [Frateuria aurantia DSM 6220]
gi|379043578|gb|AFC85634.1| DNA/RNA helicase, superfamily II [Frateuria aurantia DSM 6220]
Length = 603
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/347 (40%), Positives = 201/347 (57%), Gaps = 25/347 (7%)
Query: 117 SVPLR----EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT 172
++PLR + L+ G ES PIQ+ T +L+G D++G+A+TG GKT AF LP+L +
Sbjct: 17 ALPLRPEILQALREVGYESPSPIQSATIPPLLEGRDVLGQAQTGTGKTAAFALPVLSRIE 76
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQE 231
K P LVL PTRELA QV E F Y + G +YGG Y Q
Sbjct: 77 RDSNK----------PQALVLAPTRELAIQVAEAFQRYAAHMPGFHILPIYGGQSYGPQL 126
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L++G+ V++GTPGR+ DH+ RG++DLS LKF VLDEADEMLRMGF++DVE +L
Sbjct: 127 QALRRGVQVIVGTPGRVIDHLTRGSLDLSELKFLVLDEADEMLRMGFIDDVEKVLEATPP 186
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
+V LFSAT+PS ++ I+ + LK+ +++ +TN+R S +
Sbjct: 187 TRQVA--LFSATMPSQIRKIAQQHLKT---PVEVTIKAATSTNTNIRQRYWWVSGLHKLD 241
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
+ I+ S I+F TK++ +L++ L A A++GDI Q QRE + +
Sbjct: 242 AMTRILEAESFDA-MIVFARTKQATEELSERLQARGFAAAAINGDIAQPQRERVIQQLKD 300
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
GK LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 301 GKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG 347
>gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase [Nocardioides sp. JS614]
gi|119539479|gb|ABL84096.1| ATP-dependent RNA helicase CsdA [Nocardioides sp. JS614]
Length = 589
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 149/336 (44%), Positives = 192/336 (57%), Gaps = 21/336 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E IQA T +L G D+VG A+TG GKT AF LPIL L T
Sbjct: 29 LADVGYEKPSAIQAATIPPLLAGRDVVGLAQTGTGKTAAFALPILSRLDLTQT------- 81
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F+ Y V G+ +YGG Y Q L++G+ VV+
Sbjct: 82 ---TPQALVLAPTRELALQVCEAFERYAAHVKGVHVLPVYGGQGYGVQLSALRRGVHVVV 138
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+E+G +DLS L+F VLDEADEML MGF EDVE IL D V LFSA
Sbjct: 139 GTPGRIMDHLEKGTLDLSELRFLVLDEADEMLNMGFAEDVETILADTPDDKNVA--LFSA 196
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ IS K+L D I + G K ++N+ L S + + I+ +
Sbjct: 197 TMPAQIRRISKKYL-DDPAEITVKG--KTATASNITQRYLTVSYPQKVDALTRILEVENF 253
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK LA+ L A A++GD+ Q+QRE T+ +SGK LVAT+V
Sbjct: 254 EG-MIVFVRTKNETETLAEKLRARGLSAMAINGDVAQAQRERTVNQLKSGKLDILVATDV 312
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 313 AARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAG 348
>gi|386774462|ref|ZP_10096840.1| DNA/RNA helicase, superfamily II [Brachybacterium paraconglomeratum
LC44]
Length = 596
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 210/362 (58%), Gaps = 12/362 (3%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
EQ G ++ + F + + + L +KGI + FPIQA+T + L G D++G+A+TG G
Sbjct: 8 EQSSGTTDPQQTFADFDVRADIVKALAAKGITTPFPIQALTLPVALRGRDIIGQAKTGTG 67
Query: 159 KTLAFVLPILES--LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGL 216
KTL F +P+L+S P + G P LV+LPTRELA QV D + +
Sbjct: 68 KTLGFGIPLLQSSVAPGEPNPDDRPIGK---PQALVVLPTRELAVQVAHDLETASAKRPI 124
Query: 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276
+YGG Y Q L+KG++VV+GTPGR+ D + + ++DLS ++ VLDEADEML +
Sbjct: 125 RILTVYGGRAYEPQIEALEKGVEVVVGTPGRLIDLMRQKHLDLSQVRTAVLDEADEMLDL 184
Query: 277 GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
GF+ED+E +L V AN+ QT+LFSAT+P + ++ +F+K ++ + +
Sbjct: 185 GFLEDIEKLLQAVP-ANR-QTMLFSATMPGPIMALARRFMKQPTHIRAHDPGDESRTKAD 242
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQ----LADLLPGARALHGD 392
++ +V + +V+ +++ G +IIF TK A + LAD A LHGD
Sbjct: 243 IKQVVYRAHQLDKIEVMARVLQARGR-GLSIIFMRTKRQADRVAGDLADRGFAAAPLHGD 301
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q RE L FR+GK LVAT+VAARG+D+ DV ++ P D + Y+HR+GRTGR
Sbjct: 302 LGQGAREQALRAFRNGKIDVLVATDVAARGIDVTDVTHVVNWNCPDDDKTYLHRTGRTGR 361
Query: 453 AG 454
AG
Sbjct: 362 AG 363
>gi|396583527|ref|ZP_10484060.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
gi|395549007|gb|EJG16160.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
Length = 615
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 208/346 (60%), Gaps = 9/346 (2%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F ++ P+ + L+ KGI FPIQA+T LD D++G+A+TG GKTL F +P+LE +
Sbjct: 76 FGVTDPIVDALEDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLEDVIA 135
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+ + P L++LPTREL KQV +D + +YGG + Q
Sbjct: 136 PDEEGYEDLLNPNQPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFEPQIEA 195
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L++G D+V+GTPGR+ D + +G++ LS ++ VLDEADEML +GF+ DVE +LG+V + N
Sbjct: 196 LQRGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLGRVPE-N 254
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
+ T+LFSAT+P V ++ +F+ +++ + V+ ++ + + +VI
Sbjct: 255 R-HTMLFSATMPGPVVALARRFMVHPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVEVI 313
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGFRSG 408
I++ G RT+IF TK +A++L + L AR ALHGD+ Q RE L FR+G
Sbjct: 314 SRILQAEGRG-RTVIFCRTKRTAARLGEDL-TARGFAVGALHGDLGQGAREQALRAFRNG 371
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
K LVAT+VAARG+D++DV +I + P D + YIHR GRTGRAG
Sbjct: 372 KVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAG 417
>gi|381398643|ref|ZP_09924046.1| DEAD/DEAH box helicase domain protein [Microbacterium
laevaniformans OR221]
gi|380774134|gb|EIC07435.1| DEAD/DEAH box helicase domain protein [Microbacterium
laevaniformans OR221]
Length = 625
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 213/373 (57%), Gaps = 23/373 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E+ IQA T +L G D++G A+TG GKT AF LPIL L S+KT
Sbjct: 67 LKDVGYETPSAIQAATIPPLLAGRDVLGTAQTGTGKTAAFALPILSQL-----DLSQKT- 120
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F+ Y G + G+ +YGG Y Q L++G+ +V+
Sbjct: 121 ----PQALVLAPTRELALQVCEAFESYAGHLRGVHVLPVYGGQGYGQQLSALRRGVHIVV 176
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGRI DH+++G +DLS L+F VLDEADEML+MGF EDVE IL +V LFSA
Sbjct: 177 GTPGRIMDHLDKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPAGKQVA--LFSA 234
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ ++ +LK D + I++ K +TN+ L S + + I+ +
Sbjct: 235 TMPAQIRRLAGTYLK-DAEEINV--KAKTSTATNITQRYLIVSYPQKVDALTRILEVENF 291
Query: 363 GGRTIIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+FT TK LA+ L A A++GD+ Q QRE T+ + GK LVAT+V
Sbjct: 292 EG-MIVFTRTKNETETLAEKLRARGYAAAAINGDVAQVQRERTVNQLKDGKLDILVATDV 350
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV--EAAETITQVSDSVIPAFKSAA 476
AARGLD+ + ++ + P D E+Y+HR GRTGRAG +A +T ++ + + A
Sbjct: 351 AARGLDVERISHVVNFDLPIDTESYVHRIGRTGRAGRSGDAISFVTPRERRMLASIEKAT 410
Query: 477 EELLNNSGLSAAE 489
+ L L AE
Sbjct: 411 RQPLTEMSLPTAE 423
>gi|170782512|ref|YP_001710845.1| ATP-dependent helicase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169157081|emb|CAQ02256.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 761
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 150/376 (39%), Positives = 220/376 (58%), Gaps = 21/376 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G S FPIQA T VL G D++GR RTG GKT+AF P++E L +K
Sbjct: 391 LEELGASSPFPIQAATIPDVLAGRDVLGRGRTGSGKTIAFGAPLVERLLE--NDGAKNRK 448
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
GR P L+L PTRELA Q+ +VGL + ++GG P Q L++G+D++I
Sbjct: 449 MGRKPRALILAPTRELAMQIDRTVQPIARSVGLFTTTIFGGVPQFKQVGALQRGVDILIA 508
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR++D I++G +DLS + VLDEAD M +GF+E V+ IL +V+ Q LLFSAT
Sbjct: 509 TPGRLEDLIDQGRLDLSEIVVTVLDEADHMCDLGFLEPVQRILRQVK--KDGQRLLFSAT 566
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
L V + +FL S ++ V E +AS+ + H VL ++ +I + SSG
Sbjct: 567 LDKGVATLVNEFLPS--PSVHEVAGED-QASSTIDHRVLLIEQRDKAAIIEQL----SSG 619
Query: 364 -GRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G+T+IF T+ A QLAD L A +LHGD+ Q++R L SGK LVAT+V
Sbjct: 620 EGKTLIFARTRAFAEQLADQLEDAGIPATSLHGDLNQARRTRNLQLLTSGKVRVLVATDV 679
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEE 478
AARG+ ++D+ L+IQ + P + ++Y+HR+GRTGRAG + T+ + + A + ++
Sbjct: 680 AARGIHVDDIGLVIQADAPDEYKSYLHRAGRTGRAGKQG--TVVTL---ITKARRRRMDD 734
Query: 479 LLNNSGLSAAELLAKA 494
LL + + A ++A A
Sbjct: 735 LLGRAEIKATTVMAAA 750
>gi|78186470|ref|YP_374513.1| DEAD/DEAH box helicase-like protein [Chlorobium luteolum DSM 273]
gi|78166372|gb|ABB23470.1| ATP-dependent RNA helicase CsdA [Chlorobium luteolum DSM 273]
Length = 590
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 147/358 (41%), Positives = 208/358 (58%), Gaps = 24/358 (6%)
Query: 105 SEHPNAVSRF---RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
+E P + F +S P+ LK G E+ PIQA T ++L+G D++G+A+TG GKT
Sbjct: 3 AETPEPIRNFTDLNLSEPIMRALKEVGYETPTPIQARTIPLMLEGRDVLGQAQTGTGKTA 62
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCC 220
AF LPIL + T P VLVL PTRELA QV E F Y + G
Sbjct: 63 AFALPILSGIDLSLTD----------PQVLVLAPTRELAIQVAEAFHKYAEYLKGFHVLP 112
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG Y Q LK+G+ VV+GTPGR+ DH+ RG+++L SL+ VLDEADEMLRMGF++
Sbjct: 113 IYGGQDYGGQLRMLKRGVHVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFID 172
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVE ILG E + Q LFSAT+P+ ++ I+ K+L S + + + G + R+
Sbjct: 173 DVEWILG--ETPKERQVALFSATMPAPIRRIAQKYLNSPAE-VTIEGKTTTVETIRQRYW 229
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQS 396
++ S + ++ I+ G +IF TK +LA+ L A AL+GD+ Q+
Sbjct: 230 IV--GGSHKLDILTRILEVEPFEG-MLIFVRTKTMTLELAEKLQARGYAAAALNGDMVQN 286
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
QRE T+ + G ++AT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG
Sbjct: 287 QRERTVDQLKDGSLNIVIATDVAARGLDVERISHVINYDVPYDTESYVHRIGRTGRAG 344
>gi|354616053|ref|ZP_09033745.1| DEAD/DEAH box helicase domain protein, partial [Saccharomonospora
paurometabolica YIM 90007]
gi|353219600|gb|EHB84147.1| DEAD/DEAH box helicase domain protein, partial [Saccharomonospora
paurometabolica YIM 90007]
Length = 471
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 211/360 (58%), Gaps = 18/360 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ GIE F IQ++T + L G D++G+ARTG GKTL F +P+L+ L+ G
Sbjct: 27 LQDTGIERTFAIQSLTLPLALAGDDVIGQARTGMGKTLGFGVPLLQRLS--------LPG 78
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QV +D G +G+ + +YGG PY AQ L++G+DVVIG
Sbjct: 79 DG-TPQALVVVPTRELCVQVAKDLTEAGAHLGVRTASIYGGRPYEAQIETLQQGVDVVIG 137
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ + L + VLDEADEML +GF+ D+E IL V + K QT+LFSAT
Sbjct: 138 TPGRLLDLAEQQRLVLGKVGTLVLDEADEMLDLGFLPDIERILRMVPE--KRQTMLFSAT 195
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + +++ FL I N++ R V S + +++ +++
Sbjct: 196 MPGPIINLARTFLHQPTH-IRAEENDEGAIHERTRQFVYRSHSLDKPELVAKVLQAEGR- 253
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 254 GLTMIFTRTKRTAQKVADDLAERGFAAAAVHGDLGQGAREQALRAFRSGKIDVLVATDVA 313
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEEL 479
ARG+D+ DV ++ + P D + Y+HR GRTGRAG + +T V IP +K ++EL
Sbjct: 314 ARGIDVEDVTHVVNYQTPDDQKTYVHRIGRTGRAG-KTGVALTLVDWDEIPRWKLISDEL 372
>gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
Length = 628
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/344 (40%), Positives = 202/344 (58%), Gaps = 21/344 (6%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ + +K +G E+ PIQA T ++L+G D++G+A+TG GKT AF LP+L +
Sbjct: 12 LSEPVLKSIKDQGYENATPIQAATIPLLLEGRDVLGQAQTGTGKTAAFALPLLSMIDID- 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
R P VLVL PTRELA QV E F Y + G +YGG Y Q +L
Sbjct: 71 ---------QRDPQVLVLAPTRELAIQVAEAFQQYAHHIKGFHVLPIYGGQSYDIQLRQL 121
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K+G VV+GTPGR+ DHI R ++LS LK VLDEADEMLRMGF++DV+ +L ++ +
Sbjct: 122 KRGAHVVVGTPGRVMDHIRRKTLNLSGLKTLVLDEADEMLRMGFIDDVKWVLEQLPEQR- 180
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P+ ++ I+ LK+ + + +K + +R S + +
Sbjct: 181 -QIALFSATMPAVIRKIAQSHLKNPQH---VTIKDKTTTAPTIRQRFWMVSGRNKIDALT 236
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I+ G IIF TK + ++A+ L A AL+GD++QSQRE + +SGK
Sbjct: 237 RILEFEPFDG-MIIFVRTKTATDEVAERLEARGYAASALNGDVKQSQREQIVNRLKSGKI 295
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG
Sbjct: 296 DIVVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAG 339
>gi|452912129|ref|ZP_21960782.1| putative ATP-dependent RNA helicase [Kocuria palustris PEL]
gi|452832711|gb|EME35539.1| putative ATP-dependent RNA helicase [Kocuria palustris PEL]
Length = 655
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/423 (36%), Positives = 232/423 (54%), Gaps = 23/423 (5%)
Query: 55 ESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRF 114
++E E E+ ET+ + GE ++ E + +VEP+A VE + + F
Sbjct: 28 QTESPETEQSPETAPDQGE-----AQLEAIAEDSVEVEPQAPVETR---------TFADF 73
Query: 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG 174
+ + E L GI FPIQ+MT + L G D++G+A+TG GKTL F +P ++++
Sbjct: 74 GVREDIAEALAEAGIVHPFPIQSMTLPIALSGQDIIGQAKTGTGKTLGFGIPAVQNVVGR 133
Query: 175 PTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ AP L+++PTRELA QV D + +YGG Y Q L
Sbjct: 134 DDDGWDRLERPGAPQALIVVPTRELAVQVGSDLSIAAKTRNARVLTIYGGRAYEPQIEAL 193
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+KG++VV+GTPGR+ D + ++DLS +K VLDEADEML +GF+ DVE +L V
Sbjct: 194 EKGVEVVVGTPGRLIDLNRQHHLDLSQVKTVVLDEADEMLDLGFLPDVEKLLSAV--PRV 251
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
T+LFSAT+P V ++ +++ S I ++ ++R +V + + +++
Sbjct: 252 PHTMLFSATMPGPVVAMARRYM-SKPMHIRAAAPDEGSTKADIRQVVYRAHNLDKPEMLG 310
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I++ GR IIF TK +A+++AD L A LHGD+ Q RE L FRS K
Sbjct: 311 RILQA-DGRGRCIIFIRTKRTAAKVADELIERGFAAAPLHGDLGQGAREQALRAFRSSKV 369
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIP 470
LVAT+VAARG+D++DV +I + P D + Y+HR+GRTGRAG + IT V IP
Sbjct: 370 DILVATDVAARGIDVDDVTHVINYQCPEDEKTYLHRTGRTGRAGRKGT-AITFVDWDDIP 428
Query: 471 AFK 473
++
Sbjct: 429 RWR 431
>gi|405979651|ref|ZP_11037994.1| hypothetical protein HMPREF9241_00717 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404392067|gb|EJZ87128.1| hypothetical protein HMPREF9241_00717 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 596
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 146/375 (38%), Positives = 217/375 (57%), Gaps = 20/375 (5%)
Query: 91 VEPEAGVEEQERGES--EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSD 148
VEPEA + + G+ EH + + F ++ P+ + L+ KGI FPIQA+T LD D
Sbjct: 54 VEPEATPDVVDTGDEDLEH-KSFADFGVTDPIVDALEDKGITHPFPIQALTLPPALDRHD 112
Query: 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG-----RAPSVLVLLPTRELAKQV 203
++G+A+TG GKTL F +P+LE + A + GY P L++LPTREL KQV
Sbjct: 113 IIGQAKTGTGKTLGFGIPVLEDVI-----APDEEGYDELLNPNMPQALIILPTRELTKQV 167
Query: 204 HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263
D + +YGG + Q LKKG D+V+GTPGR+ D + +G + L+ +
Sbjct: 168 ATDLREAAAYLSTRIVEIYGGVAFEPQIEALKKGADIVVGTPGRLIDLLRKGVLHLNGAE 227
Query: 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323
VLDEADEML +GF+ DVE +L + AN+ T+LFSAT+P V ++ KF++
Sbjct: 228 TVVLDEADEMLDLGFLPDVETLLARTP-ANR-HTMLFSATMPGPVVALARKFMEQPTHIR 285
Query: 324 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL 383
++ + +V+ ++ + + +V+ I++ G R+IIF TK +A++L + L
Sbjct: 286 AQDPEDQNQTVNSVKQVIYRVHAMDKVEVVARILQSEGRG-RSIIFCRTKRTAARLGEDL 344
Query: 384 P----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
+LHGD+ Q RE L FR+GK LVAT+VAARG+D++DV +I + P D
Sbjct: 345 TERGFAVGSLHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPED 404
Query: 440 VEAYIHRSGRTGRAG 454
+ YIHR GRTGRAG
Sbjct: 405 EKIYIHRIGRTGRAG 419
>gi|311743785|ref|ZP_07717591.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
gi|311312915|gb|EFQ82826.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
Length = 470
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 143/344 (41%), Positives = 195/344 (56%), Gaps = 18/344 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L GIE+ FPIQ MT + L G+DL+G+ARTG GKTLAF +P+++ T A
Sbjct: 4 IADALTGHGIETPFPIQEMTLSVALMGTDLIGQARTGTGKTLAFAIPVIQR-----TVAP 58
Query: 180 KKTGYGRA-----PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
YG P L++ PTRELA QV D + G + +YGG PY Q L
Sbjct: 59 HDPEYGELAAPGKPQALIIAPTRELAIQVAGDVAMASKLRGTRNLTIYGGVPYEGQLDAL 118
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+ G+D+VIGTPGRI D R +DLS +K VLDEADEML +GF+ DVE IL K +
Sbjct: 119 ESGVDIVIGTPGRILDLANRRALDLSHVKSMVLDEADEMLDLGFLPDVEAILAKTPELR- 177
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT+LFSAT+P + ++ K ++ I +E + V + +++
Sbjct: 178 -QTMLFSATMPGAIVGLARKHMRH-PMNIRAESSEDTQMVPATAQFVWQAHDMDKPEIVS 235
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKF 410
I++ R IIFT TK +A ++AD L A LHGD+ Q+ RE L FR GK
Sbjct: 236 RILQA-DDVARVIIFTRTKRTAQRVADELVDRGFPASPLHGDMAQTAREKALQRFRDGKI 294
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
TLVAT+VAARG+D+ ++ +I P D + Y+HR GRTGRAG
Sbjct: 295 NTLVATDVAARGIDVANISHVINYNCPEDDKTYVHRIGRTGRAG 338
>gi|376253820|ref|YP_005142279.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
PW8]
gi|372116904|gb|AEX69374.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
PW8]
Length = 436
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 210/365 (57%), Gaps = 15/365 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + G++ F IQ +T + LDG DL+G+ARTG GKT F +P+++ + + A+
Sbjct: 19 ITDALAAVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFD----AA 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P LV++PTRELA QV +D + + +T +YGG PY Q +L+ G+D
Sbjct: 75 DVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D +RGN+ L + VLDEADEML +GF D+E +L + + QT+L
Sbjct: 135 VVVGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
FSAT+P V ++ F+ + G + AST ++ +S V I++
Sbjct: 193 FSATMPGAVVTLARTFMHHPVHIRAEDTGAAQTHASTT--QVIFQAHRMDKSAVTARILQ 250
Query: 359 CYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTLAGFRSGKFMTLV 414
G+TIIF TK +A++LAD L G R +HGD+ QS RE +L FR+GK LV
Sbjct: 251 A-EGRGKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILV 309
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS 474
AT+VAARGLDI+DV +I + P D Y+H GRTGRAG +T V +P ++
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHHIGRTGRAG-HTGTAVTLVGYDELPKWQL 368
Query: 475 AAEEL 479
+EL
Sbjct: 369 INDEL 373
>gi|315604928|ref|ZP_07879985.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
str. F0310]
gi|315313364|gb|EFU61424.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
str. F0310]
Length = 598
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 142/377 (37%), Positives = 220/377 (58%), Gaps = 16/377 (4%)
Query: 90 KVEPEAGVEEQ------ERGESE-HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDM 142
+ PEA +E+ ++G+ + + + F ++ P+ + L+ KGI FPIQA+T
Sbjct: 44 NIHPEAPAQEEATPDITDKGDEDLDKKSFADFGVTDPIVDALEDKGITHPFPIQALTLGP 103
Query: 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202
LD D++G+A+TG GKTL F +P+LE + + + P L++LPTREL KQ
Sbjct: 104 ALDRHDIIGQAKTGTGKTLGFGIPVLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQ 163
Query: 203 VHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262
V +D + +YGG + Q L +G D+V+GTPGR+ D + +G++ LS +
Sbjct: 164 VAQDLRDAAKYLSTRIVEIYGGVAFEPQIEALTRGADIVVGTPGRLIDLLRKGHLHLSGV 223
Query: 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKT 322
+ VLDEADEML +GF+ DVE +LG+V + N+ T+LFSAT+P V ++ +F+
Sbjct: 224 ETVVLDEADEMLDLGFLPDVETLLGRVPE-NR-HTMLFSATMPGPVVALARRFMVHPTHI 281
Query: 323 IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADL 382
+++ + V+ ++ + + +V+ I++ G RT+IF TK +A++L +
Sbjct: 282 RAQDPDDQNQTVNTVKQVIYRVHAMNKVEVVARILQAEGRG-RTVIFCRTKRTAARLGED 340
Query: 383 LPGAR-----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
L AR ALHGD+ Q RE L FR GK LVAT+VAARG+D++DV +I + P
Sbjct: 341 L-TARGFAVGALHGDLGQGAREQALRAFRKGKVDVLVATDVAARGIDVDDVTHVINYQCP 399
Query: 438 RDVEAYIHRSGRTGRAG 454
D + YIHR GRTGRAG
Sbjct: 400 EDEKIYIHRIGRTGRAG 416
>gi|335419959|ref|ZP_08551002.1| Cold-shock DEAD-box protein A [Salinisphaera shabanensis E1L3A]
gi|334895605|gb|EGM33773.1| Cold-shock DEAD-box protein A [Salinisphaera shabanensis E1L3A]
Length = 609
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 146/360 (40%), Positives = 206/360 (57%), Gaps = 20/360 (5%)
Query: 104 ESEHPN-AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
E+E P A S +S + L G E+ PIQA T +LDG D++G+A+TG GKT A
Sbjct: 6 ENESPQVAFSDLALSDAVMAALADVGYETPSPIQAATIPPLLDGKDVLGQAQTGTGKTAA 65
Query: 163 FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCL 221
F LPIL L + + G+ P LVL PTREL QV E F Y + G +
Sbjct: 66 FALPILSGLPD-------RGKGGKGPQALVLTPTRELTIQVAEAFQRYASHIPGFHVLPI 118
Query: 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281
YGG Y Q LK+G++VV+GTPGR+ DH++RG + L +L + VLDEADEMLRMGF+ED
Sbjct: 119 YGGQGYGPQLAALKRGVNVVVGTPGRVMDHLKRGTLKLDALDWMVLDEADEMLRMGFIED 178
Query: 282 VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH-I 340
VE I +V LFSAT+PS ++ I+ L+ + ++ K + N+R
Sbjct: 179 VEWIFEHTPPQRQVA--LFSATMPSAIRRIAKTHLREPQ---EITIQTKTTTAINIRQRY 233
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQS 396
+ +++ + ++ I+F TK+S +LA+ L AL+GDI Q+
Sbjct: 234 WIVGGGTSKLDALTRLLEAEPFDA-MIVFARTKKSTDELAERLSARGYACAALNGDIVQA 292
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
QRE T+A ++G+ +VAT+VAARGLD+ + +I + P D EAY+HR GRTGRAG E
Sbjct: 293 QRERTVAKLKNGQLDIIVATDVAARGLDVERISHVINFDIPHDTEAYVHRIGRTGRAGRE 352
>gi|289705043|ref|ZP_06501454.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
gi|289558206|gb|EFD51486.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
Length = 715
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/326 (42%), Positives = 190/326 (58%), Gaps = 15/326 (4%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ T ++LDG D+VG A+TG GKT AF LP L L + + G P VLVL
Sbjct: 73 PIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALSRLA----ETTDVNGRADTPQVLVL 128
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSC-CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV + FD Y + S +YGG+PY Q L++G VV+GTPGR+ DH+
Sbjct: 129 APTRELALQVADAFDSYAKHLDDVSVLAVYGGSPYGPQLAGLRRGAQVVVGTPGRVIDHL 188
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
ERG++DLS L+ VLDEADEMLRMGF E+V+ IL D QT LFSAT+P ++ IS
Sbjct: 189 ERGSLDLSDLQTLVLDEADEMLRMGFAEEVDRILASTPDTK--QTALFSATMPPAIRRIS 246
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTET 372
++L + + ++ + S +R L + + + I+ G I F T
Sbjct: 247 AQYLNAPE---EVAVARQSTTSATIRQRYLQVGHQWKFEALSRILETEEHDG-VIAFVRT 302
Query: 373 KESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
+ +LA L A A+ GDI Q QRE T+ ++G+ LVAT+VAARGLD+ +
Sbjct: 303 RAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKAGRVDILVATDVAARGLDVERI 362
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAG 454
++ + P+D E+Y+HR GRTGRAG
Sbjct: 363 SHVVNYDIPQDAESYVHRIGRTGRAG 388
>gi|451340755|ref|ZP_21911241.1| putative ATP-dependent RNA helicase [Amycolatopsis azurea DSM
43854]
gi|449416398|gb|EMD22140.1| putative ATP-dependent RNA helicase [Amycolatopsis azurea DSM
43854]
Length = 529
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 151/357 (42%), Positives = 204/357 (57%), Gaps = 22/357 (6%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
E E P S F + + + L GIE F IQA+T + + G DL+G+ARTG GKTL F
Sbjct: 2 EPESPTFAS-FGVKPEIVKALGEAGIERTFAIQALTLPLAMAGDDLIGQARTGMGKTLGF 60
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+P+L + + G G P VLV++PTREL QV D G +G+ + +YG
Sbjct: 61 GVPLLHRV--------EVPGDG-TPQVLVVVPTRELCIQVANDLKGAGKHLGIRTLAIYG 111
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G PY Q L+ G+DVVIGTPGR+ D E+ ++ L ++ VLDEADEML +GF+ D+E
Sbjct: 112 GRPYEPQIAALRNGVDVVIGTPGRLLDLAEQKHLVLGKVRGLVLDEADEMLDLGFLPDIE 171
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
IL V D K QT+LFSAT+P + ++ FL + I N+ V
Sbjct: 172 RILRMVPD--KRQTMLFSATMPGPIITLARTFL-TQPTHIRAEENDAGAIHERTTQFVYR 228
Query: 344 CSSSARSQVIPDIIRCYSSGGR--TIIFTETKESASQLADLLP----GARALHGDIQQSQ 397
S + ++ I R + GR T+IFT TK +A ++AD L A A+HGD+ Q
Sbjct: 229 AHSMDKPEL---IARALQAEGRGLTMIFTRTKRTAQKVADELVERGFAAAAVHGDLGQGA 285
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RE L FRSGK LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG
Sbjct: 286 REQALRAFRSGKVDVLVATDVAARGIDIDDVTHVINYQTPEDEKTYVHRIGRTGRAG 342
>gi|397653450|ref|YP_006494133.1| hypothetical protein CULC0102_0697 [Corynebacterium ulcerans 0102]
gi|393402406|dbj|BAM26898.1| hypothetical protein CULC0102_0697 [Corynebacterium ulcerans 0102]
Length = 441
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 222/385 (57%), Gaps = 18/385 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S H + ++ + + L +GI F IQ +T + LDG D++G+ARTG GKTL F
Sbjct: 4 STHKPTFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFG 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P+L+ + + A+ P LV++PTRELA+QV ED ++ + +YGG
Sbjct: 64 VPLLDRVFD----AADVAELDGTPRALVVVPTRELAQQVGEDLELAARHTPVRVTTVYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L KG+DVV+GTPGR+ D ++G++ L + VLDEADEML +GF D+E
Sbjct: 120 RPYEEQIHVLDKGVDVVVGTPGRLIDLHQQGHLILDHVAILVLDEADEMLDLGFFPDIEK 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVL 342
+LG + ++ QTLLFSAT+P V ++ F+ + I + E + T+ + +V
Sbjct: 180 LLGAL--THQHQTLLFSATMPGPVLTLARTFM---LRPIHIRAEEVNASHTHASIEQVVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
++ + ++ + G+TIIFT TK +A++LA+ L G +HGD+ Q+ R
Sbjct: 235 QAHRMDKTAITARALQAHER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458
E++L+ FR + LVAT+VAARGLDI+DV +I + P D Y+HR GRTGRAG
Sbjct: 294 ELSLSMFRDSRVDILVATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAG-HTG 352
Query: 459 ETITQVSDSVIPAFKSAAEEL-LNN 482
IT V + +K ++EL L+N
Sbjct: 353 TAITLVGYDELTKWKIISDELGLDN 377
>gi|317507153|ref|ZP_07964911.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
gi|316254555|gb|EFV13867.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
Length = 530
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 152/384 (39%), Positives = 209/384 (54%), Gaps = 24/384 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E ++ G E+ PIQA T +LDG D+VG A TG GKT AF LP+L S+
Sbjct: 22 EAVREVGYETPSPIQAQTIPALLDGRDVVGLAATGTGKTAAFALPVL----------SRI 71
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC-CLYGGAPYHAQEFKLKKGIDV 240
R P LVL PTRELA QV E F Y + S C+YGG Y Q L +G V
Sbjct: 72 DPKLRRPQALVLAPTRELALQVSEAFSRYASKMPQVSVVCIYGGGAYPVQLQALGRGAQV 131
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH+ERG + L L+F VLDEADEML+MGF EDVE +LG A + Q LF
Sbjct: 132 VVGTPGRVVDHLERGTLKLGELRFLVLDEADEMLKMGFQEDVERVLGAA--AEEKQVALF 189
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ IS +L + +++ S N+ + + ++ I+
Sbjct: 190 SATMPGAIRKISKTYLHN---PVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRILEVE 246
Query: 361 SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
I+F TK++ +LA+ L AR L+GDI Q+ RE T++ R GK LVAT
Sbjct: 247 PFSA-MIVFVRTKQATEELAERLRARGFAARPLNGDIPQAARERTVSALREGKIDILVAT 305
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAET--ITQVSDSVIPAFKS 474
+VAARGLD+ + + + P D E+Y+HR GRTGRAG +T S+I A +
Sbjct: 306 DVAARGLDVERITHVFNYDAPHDTESYVHRIGRTGRAGRTGVSYLFVTPRERSMIGAIER 365
Query: 475 AAEELLNNSGL-SAAELLAKALAK 497
A + L + + A++ A +AK
Sbjct: 366 ATRQPLAETPFPTVADVNAGRIAK 389
>gi|78184980|ref|YP_377415.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
gi|78169274|gb|ABB26371.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
Length = 624
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 164/421 (38%), Positives = 227/421 (53%), Gaps = 46/421 (10%)
Query: 40 DKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEE 99
DKK+ ++E ES E +++E+ V +AK EP++G +
Sbjct: 25 DKKEVDQEEVLTTTIESSTAEPSTTEASTTEVTAEVT---------ADEAKSEPQSGFDG 75
Query: 100 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
F S L + L KG PIQ F ++ G DLVG+A+TG GK
Sbjct: 76 --------------FGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGK 121
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTS 218
T AF LP+LE L +G +KT P VLVL PTRELA QV + F Y G L
Sbjct: 122 TAAFALPLLERLESG-----QKT-----PQVLVLAPTRELAMQVADSFKAYAAGHPHLKV 171
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
+YGG + +Q L++G+DVV+GTPGR+ DH+ +G +D S L VLDEADEMLRMGF
Sbjct: 172 LAVYGGTDFRSQISTLRRGVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGF 231
Query: 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338
++DVE IL ++ + Q +LFSAT+P ++ +S ++L +D + + ++ R
Sbjct: 232 IDDVEWILEQL--PKERQVVLFSATMPPEIRRLSKRYL-NDPAEVTIKTKDQDGKLIRQR 288
Query: 339 HIVLPCSSSARS-QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDI 393
I +P S + Q + D C G IIF TK +A+ L A L+GD+
Sbjct: 289 AITVPMSHKLEALQRVLDA--CGGEG--VIIFARTKVITLTVAETLEAAGHQVAVLNGDV 344
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q+QRE T+ RSG LVAT+VAARGLD+ + L+I + P D EAY+HR GRTGRA
Sbjct: 345 PQNQRERTVERLRSGSVDVLVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRA 404
Query: 454 G 454
G
Sbjct: 405 G 405
>gi|383791316|ref|YP_005475890.1| DNA/RNA helicase [Spirochaeta africana DSM 8902]
gi|383107850|gb|AFG38183.1| DNA/RNA helicase, superfamily II [Spirochaeta africana DSM 8902]
Length = 485
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 136/371 (36%), Positives = 209/371 (56%), Gaps = 32/371 (8%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S+ + + + +K +G + PIQA + +++ GSD++G A+TG GKT AFVLP+L+ L
Sbjct: 7 SQLELESTILDAVKRQGYTTPTPIQAQSIPVLMHGSDMLGTAQTGTGKTAAFVLPLLDRL 66
Query: 172 TNGPTKASKKTGYGRAPS----------------------VLVLLPTRELAKQVHEDFDV 209
P + R P+ L+L PTRELA Q+ +
Sbjct: 67 IKNPRQPETSANPAREPAHNRNGRNSRDSRRRPVKPARPEALILAPTRELAIQIGDSLQK 126
Query: 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269
YG GL +YGGAP +Q KL+ D++ TPGR+ D + G IDL+ ++ +LDE
Sbjct: 127 YGSGSGLKHTVIYGGAPKPSQAAKLRNNPDILAATPGRLMDFVGEGLIDLTGIRVLILDE 186
Query: 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE 329
AD ML MGF+ ++ I ED + QT+LFSAT+P ++ ++ + L + ++ + +
Sbjct: 187 ADRMLDMGFIPEMRKIAAMAEDRD--QTVLFSATMPREIESLAQELLTNPERVA--IAPQ 242
Query: 330 KMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-- 387
++ + VL +++++P +IR ++ R IIFT TK A+++A LL A
Sbjct: 243 EVTVD-RITQTVLHLDREDKTKLLPALIRDHNM-FRVIIFTRTKHRATRVAKLLSKAEIP 300
Query: 388 --ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445
A+HGD Q QR+ L GFR GK LVAT+VA+RG+D++DV +I E P + E+Y+H
Sbjct: 301 ADAIHGDRTQGQRQRALEGFRRGKIQALVATDVASRGIDVDDVSHVINFEIPNEAESYVH 360
Query: 446 RSGRTGRAGVE 456
R GRTGRAG E
Sbjct: 361 RIGRTGRAGTE 371
>gi|433457741|ref|ZP_20415720.1| DNA/RNA helicase [Arthrobacter crystallopoietes BAB-32]
gi|432194443|gb|ELK51067.1| DNA/RNA helicase [Arthrobacter crystallopoietes BAB-32]
Length = 635
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 145/337 (43%), Positives = 195/337 (57%), Gaps = 21/337 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN-GPTKASKKT 182
L G E PIQA T +L+G D+VG A+TG GKT AF +P L + PTK ++
Sbjct: 39 LTDVGYEKPSPIQAATIPALLEGRDVVGLAQTGTGKTAAFAIPALSRMAELPPTKNTQ-- 96
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVV 241
+LVL PTRELA QV E F Y + T +YGG+ Y Q L++G VV
Sbjct: 97 -------ILVLAPTRELALQVAEAFSSYAAHMEDFTVLPVYGGSAYGPQLAGLRRGAQVV 149
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ DHIE+G++DLS L++ VLDEADEMLRMGF E+V+ IL + +V LFS
Sbjct: 150 VGTPGRVIDHIEKGSLDLSELQYVVLDEADEMLRMGFAEEVDRILDATPEEKQVA--LFS 207
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P+ ++ I+ K+LK D I + K TN+R + + + + I+
Sbjct: 208 ATMPTAIRRIAKKYLK-DPAEISV--KSKTSTGTNIRQRYVQVMGAHKLDAMTRILETEE 264
Query: 362 SGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
G I F TK + LAD L A A++GDI Q QRE T+ R GK LVAT+
Sbjct: 265 FDG-VIAFVRTKMATEDLADKLKARGFTAAAINGDIPQQQRERTVEALREGKIDILVATD 323
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 324 VAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAG 360
>gi|337290208|ref|YP_004629229.1| hypothetical protein CULC22_00594 [Corynebacterium ulcerans
BR-AD22]
gi|334698514|gb|AEG83310.1| hypothetical protein CULC22_00594 [Corynebacterium ulcerans
BR-AD22]
Length = 441
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 222/385 (57%), Gaps = 18/385 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S H + ++ + + L +GI F IQ +T + LDG D++G+ARTG GKTL F
Sbjct: 4 STHKPTFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFG 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P+L+ + + A+ P LV++PTRELA+QV ED ++ + +YGG
Sbjct: 64 VPLLDRVFD----AADVAELDGTPRALVVVPTRELAQQVGEDLELAARHTPVRVTTVYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L KG+DVV+GTPGR+ D ++G++ L + VLDEADEML +GF D+E
Sbjct: 120 RPYEEQIHVLDKGVDVVVGTPGRLIDLHQQGHLILDHVAILVLDEADEMLDLGFFPDIEK 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVL 342
+LG + ++ QTLLFSAT+P V ++ F+ + I + E + T+ + +V
Sbjct: 180 LLGAL--THQHQTLLFSATMPGPVLTLARTFM---LRPIHIRAEEVNASHTHASIEQVVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
++ + ++ + G+TIIFT TK +A++LA+ L G +HGD+ Q+ R
Sbjct: 235 QAHRMDKTAITARALQAHER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458
E++L+ FR + LVAT+VAARGLDI+DV +I + P D Y+HR GRTGRAG
Sbjct: 294 ELSLSMFRDSRVDILVATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAG-HTG 352
Query: 459 ETITQVSDSVIPAFKSAAEEL-LNN 482
IT V + +K ++EL L+N
Sbjct: 353 TAITLVGYDELTKWKIISDELGLDN 377
>gi|317970363|ref|ZP_07971753.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0205]
Length = 598
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 144/347 (41%), Positives = 206/347 (59%), Gaps = 23/347 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S + E L+ G PIQA ++ G DLVG+A+TG GKT AF LP+L +L
Sbjct: 36 FGFSPEILEALEEIGYSEPSPIQAAAIPELMLGRDLVGQAQTGTGKTAAFALPMLAALDE 95
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEF 232
R P VLVL PTRELA QV + F Y + L +YGG+ + Q
Sbjct: 96 ----------TQRTPQVLVLTPTRELAIQVADSFKSYATKLPHLRVLPVYGGSDFRDQIH 145
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
KLK+G+ VV+GTPGR+ DH+ +G +D+S L+ VLDEADEMLRMGF++DVE +L ++ +
Sbjct: 146 KLKRGVQVVVGTPGRVMDHMRQGTLDVSGLRSLVLDEADEMLRMGFIDDVEWVLSQLPE- 204
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKK-TIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
K Q +LFSAT+PS ++ IS ++L S + TI G++ S+ ++ + + + +
Sbjct: 205 -KRQVVLFSATMPSEIRRISHQYLNSPAEITIKTKGSD----SSRIQQRFITVNGPMKLE 259
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
+ ++ + G IIF TK +A+ L G L+GD+ QSQRE T+ ++
Sbjct: 260 ALSRVLEAETKEG-VIIFARTKAITVTVAEALEAKGYGVAVLNGDVAQSQRERTIERLKN 318
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG
Sbjct: 319 GTVDVLVATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAG 365
>gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 425
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 146/358 (40%), Positives = 210/358 (58%), Gaps = 22/358 (6%)
Query: 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG 174
++ + +++ L+ G ES PIQ + L+G D+VG+A+TG GKT AF +PI+E++ +
Sbjct: 17 QLDLKVQKSLEEMGFESPTPIQKEAIPLALEGYDIVGQAQTGTGKTAAFGIPIIENINSR 76
Query: 175 PTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
R +VL PTRELA QV + + G G+++ +YGG Q L
Sbjct: 77 E----------RGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAYPIYGGVSIERQANIL 126
Query: 235 KKGID-VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
K+G + +V+GTPGR+KD I RG + L ++F VLDEAD+ML MGF+ED+E IL K
Sbjct: 127 KRGRNQIVVGTPGRVKDLISRGLLKLDRVRFAVLDEADQMLDMGFIEDIEEILSKT--PR 184
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
+ QTLLFSAT+P ++ + +LKS KTI VG + + R I + ++
Sbjct: 185 EKQTLLFSATMPYEIRKLIDNYLKSGYKTIK-VGKNLITPKVHQRIIFVKSEDKLKALEK 243
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
G TI+F +TK A+++ L ARA+HGD+ Q QRE + F+ GK
Sbjct: 244 L---LKEHQGTSTIVFVKTKRDAAEIEKELQKRSINARAIHGDLSQRQRENVMKAFKEGK 300
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDS 467
TLVAT+VAARG+DI DV L+I E P + E+Y+HR GRTGRAG E I+ V+D+
Sbjct: 301 VKTLVATDVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGT-AISLVADN 357
>gi|120405422|ref|YP_955251.1| DEAD/DEAH box helicase [Mycobacterium vanbaalenii PYR-1]
gi|119958240|gb|ABM15245.1| ATP-dependent RNA helicase CsdA [Mycobacterium vanbaalenii PYR-1]
Length = 564
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 193/331 (58%), Gaps = 20/331 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +LDGSD+VG A+TG GKT AF +PIL SK R
Sbjct: 32 GYETPSPIQAATIPAILDGSDVVGLAQTGTGKTAAFAIPIL----------SKIDTDSRN 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
LVL PTRELA QV E F YG + + +YGGA Y Q LK+G VV+GTPGR
Sbjct: 82 TQALVLAPTRELALQVAEAFGRYGAHLRVNVLPIYGGASYVPQLSGLKRGAQVVVGTPGR 141
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ DH+E+G++DLS L + VLDEADEML+MGF EDVE IL + +V LFSAT+P
Sbjct: 142 VIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVA--LFSATMPPA 199
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
+K I+ K+L +++ K + + N+ S + + ++ G I
Sbjct: 200 IKKITAKYLHD---PVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLEV-EQGDAMI 255
Query: 368 IFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
+F TK++ ++A+ L A A++GDI Q+ RE T++ + G LVAT+VAARGL
Sbjct: 256 VFVRTKQATEEVAEKLRSRGFAAAAINGDIPQAVRERTISQLKDGTIDILVATDVAARGL 315
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
D+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 316 DVERISHVVNFDIPHDPESYVHRIGRTGRAG 346
>gi|329945971|ref|ZP_08293658.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
gi|328528419|gb|EGF55397.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
Length = 557
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 150/372 (40%), Positives = 221/372 (59%), Gaps = 12/372 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + E L +KGI FPIQA+T + L+G D++G+A+TG GKTL F +P+L ++L
Sbjct: 71 FGVEPEICEALAAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLG 130
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + G +P LV+LPTRELAKQV E+ + +YGG Y Q
Sbjct: 131 PGEEGWDEDPASG-SPQGLVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIE 189
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +VV+GTPGR+ D ++RG +DL+ + VLDEADEML +GF+ DVE IL + A
Sbjct: 190 DLERGAEVVVGTPGRLIDLMDRGVLDLTHVTTVVLDEADEMLDLGFLPDVEKILARTR-A 248
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
++ T+LFSAT+P V ++ +++ + G+E M T V+ +V S + +
Sbjct: 249 DR-HTMLFSATMPGAVVTLARRYMTRPTHIRAQDPGDEGMTVQT-VQQVVYRTHSMNKVE 306
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ GRTIIF TK +A+++AD L ALHGD+ Q RE L FR+
Sbjct: 307 VVARILQAEGR-GRTIIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRN 365
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDS 467
K LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG + +T V
Sbjct: 366 DKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAG-NSGTAVTFVDWD 424
Query: 468 VIPAFKSAAEEL 479
+P ++ A+ L
Sbjct: 425 DVPRWRIIAKAL 436
>gi|145222813|ref|YP_001133491.1| DEAD/DEAH box helicase [Mycobacterium gilvum PYR-GCK]
gi|145215299|gb|ABP44703.1| ATP-dependent RNA helicase CsdA [Mycobacterium gilvum PYR-GCK]
Length = 559
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 193/331 (58%), Gaps = 20/331 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L+GSD+VG A+TG GKT AF +PIL SK R
Sbjct: 32 GYESPSPIQAATIPAILEGSDVVGLAQTGTGKTAAFAIPIL----------SKIDTDSRN 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
LVL PTRELA QV E F YG + + +YGG+ Y Q LK+G VV+GTPGR
Sbjct: 82 TQALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAGLKRGAQVVVGTPGR 141
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ DH+E+G++DLS L + VLDEADEML+MGF EDVE IL + +V LFSAT+P
Sbjct: 142 VIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVA--LFSATMPPA 199
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
+K I+ K+L +++ K + + N+ S + + ++ G I
Sbjct: 200 IKKITAKYLHD---PVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLET-EQGDAMI 255
Query: 368 IFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
+F TK++ ++A+ L A A++GDI Q+ RE T+A + G LVAT+VAARGL
Sbjct: 256 VFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTIAQLKDGTIDILVATDVAARGL 315
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
D+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 316 DVERISHVVNFDIPHDPESYVHRIGRTGRAG 346
>gi|376284214|ref|YP_005157424.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
31A]
gi|371577729|gb|AEX41397.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
31A]
Length = 436
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 210/365 (57%), Gaps = 15/365 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L + G++ F IQ +T + LDG DL+G+ARTG GKT F +P+++ + + A+
Sbjct: 19 ITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFD----AA 74
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P LV++PTRELA QV +D + + +T +YGG PY Q +L+ G+D
Sbjct: 75 DVAELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D + GN+ L + VLDEADEML +GF D+E +L + + QT+L
Sbjct: 135 VVVGTPGRLIDLYQLGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
FSAT+P V ++ F+ + G + AST I+ +S V +++
Sbjct: 193 FSATMPGAVVTLARTFMHQPVHIRAEDTGAAQTHASTT--QIIFQAHRMDKSAVTARVLQ 250
Query: 359 CYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTLAGFRSGKFMTLV 414
G+TIIF TK +A++LAD L G R +HGD+ QS RE +L FR+GK LV
Sbjct: 251 A-EGRGKTIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILV 309
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS 474
AT+VAARGLDI+DV +I + P D Y+HR GRTGRAG +T V +P ++
Sbjct: 310 ATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAG-HTGTAVTLVGYDELPKWQL 368
Query: 475 AAEEL 479
+EL
Sbjct: 369 INDEL 373
>gi|333989860|ref|YP_004522474.1| cold-shock DEAD-box protein DeaD [Mycobacterium sp. JDM601]
gi|333485828|gb|AEF35220.1| cold-shock DEAD-box protein DeaD [Mycobacterium sp. JDM601]
Length = 547
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 141/332 (42%), Positives = 196/332 (59%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ IQA T +L GSD+VG A+TG GKT AF +PIL + ASK T
Sbjct: 9 GYETPSAIQAATIPALLAGSDVVGLAQTGTGKTAAFAIPILSRIDT----ASKAT----- 59
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDVVIGTPG 246
LVL PTRELA QV E F YG + + +YGGA Y Q LK+G VV+GTPG
Sbjct: 60 -QALVLAPTRELALQVAEAFGRYGSHLPRVNVLPIYGGASYTVQLSGLKRGAQVVVGTPG 118
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG++DLS L + VLDEADEML+MGF EDVE IL + +V LFSAT+P
Sbjct: 119 RVIDHLERGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVA--LFSATMPP 176
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+T++L +++ K + N+ + + + + ++ +
Sbjct: 177 AIRRITTRYLHD---PVEVTVEAKTTTAENISQRYIEVAGPRKMDALTRVLEVETFEA-M 232
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK++ ++A+ L A A++GDI Q+QRE T+A +SG LVAT+VAARG
Sbjct: 233 IVFVRTKQATEEVAEKLRARGFAAAAINGDIAQAQRERTIASLKSGNIDILVATDVAARG 292
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P D EAY+HR GRTGRAG
Sbjct: 293 LDVERISHVVNYDIPHDTEAYVHRIGRTGRAG 324
>gi|418051651|ref|ZP_12689735.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
gi|353184343|gb|EHB49870.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
Length = 565
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 140/351 (39%), Positives = 199/351 (56%), Gaps = 20/351 (5%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P + +I + + + G E+ IQA T +L GSD+VG A+TG GKT AF +PI
Sbjct: 8 PQTFADLQIHPAVLQAVADVGYETPSAIQAATIPALLAGSDVVGLAQTGTGKTAAFAIPI 67
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
L SK R LVL PTRELA QV E F YG + + +YGG+ Y
Sbjct: 68 L----------SKIDAESRNTQALVLAPTRELALQVAEAFSRYGAHLKINVLPIYGGSSY 117
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q LK+G +V+GTPGR+ DH+E+G++DLS L + VLDEADEML+MGF EDVE IL
Sbjct: 118 VPQLAGLKRGAQIVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILA 177
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+ +V LFSAT+P +K I+TK+L +++ K + + N+ S
Sbjct: 178 DTPEYKQVA--LFSATMPPGIKKITTKYLHD---PVEVTVKSKTQTAENITQRYFQVSYP 232
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403
+ + ++ G I+F TK++ ++A+ L A A++GDI Q+ RE T+A
Sbjct: 233 RKIDALTRLLEV-EEGDAMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTIA 291
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ G LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 292 SLKDGTIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAG 342
>gi|260434308|ref|ZP_05788278.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
gi|260412182|gb|EEX05478.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
Length = 607
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 149/347 (42%), Positives = 200/347 (57%), Gaps = 23/347 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S L L KG PIQ F ++ G DLVG+A+TG GKT AF LP+LE L +
Sbjct: 62 FGFSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLES 121
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLYGGAPYHAQEF 232
G +KT P LVL PTRELA QV E F Y G L +YGG + +Q
Sbjct: 122 G-----QKT-----PQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQIS 171
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G+DVV+GTPGR+ DH+ +G +D S L+ VLDEADEMLRMGF++DVE IL ++ +
Sbjct: 172 ALRRGVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQ 231
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-Q 351
+V +LFSAT+P ++ +S ++LK D + + ++ R I +P + Q
Sbjct: 232 RQV--VLFSATMPPEIRRLSKRYLK-DPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQ 288
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRS 407
+ D C G IIF TK +A+ L L+GD+ Q+QRE T+ RS
Sbjct: 289 RVLDA--CGGEG--VIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRS 344
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G LVAT+VAARGLD+ + L+I + P D EAY+HR GRTGRAG
Sbjct: 345 GSVDILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAG 391
>gi|323357599|ref|YP_004223995.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
gi|323273970|dbj|BAJ74115.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
Length = 746
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 199/335 (59%), Gaps = 14/335 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L + G S FPIQA T +L+G D++ R RTG GKT+AF P++E + +A ++
Sbjct: 369 LAALGAASPFPIQAATVKPILEGRDVLARGRTGSGKTIAFGAPLVERILRA--QAGQRRE 426
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
+GRAP L+L PTRELA Q+ +VGL + +YGG P Q LKKG+D++IG
Sbjct: 427 FGRAPKALILAPTRELALQIDRTVQPIARSVGLFTTQIYGGVPQARQVGALKKGVDIIIG 486
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGRI+D +++G +DLS ++ VLDE D M +GF+E V+ IL D + Q LLFSAT
Sbjct: 487 TPGRIEDLLKQGKLDLSQVQVTVLDEGDHMCELGFLEPVQRILRATADGS--QKLLFSAT 544
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
L V + +FL + ++ G + + S + H VL ++Q++ ++
Sbjct: 545 LDREVAALVDEFL-VEPAVYEVAGED--QDSGTIEHRVLVIEHRDKAQILDSLV---DRD 598
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G+T++F T+ A LA+ A ALHGD+ Q +R L SG+ LVAT+VA
Sbjct: 599 GKTLVFARTRAYAEMLAEQFDEAGIAAVALHGDLNQQKRTRNLEKLTSGRVNVLVATDVA 658
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
ARG+ ++D+ L+IQ + P + + Y+HRSGRTGRAG
Sbjct: 659 ARGIHVDDIDLVIQADAPDEYKTYLHRSGRTGRAG 693
>gi|348169282|ref|ZP_08876176.1| ATP-dependent RNA helicase [Saccharopolyspora spinosa NRRL 18395]
Length = 576
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 145/349 (41%), Positives = 201/349 (57%), Gaps = 22/349 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L G E+ PIQ T ++L+G D++G A+TG GKT AF LPIL L
Sbjct: 15 QTLTEIGYETPSPIQEKTIPLLLEGRDVLGLAQTGTGKTAAFALPILSRLDLD------- 67
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
P LVL PTRELA QV E F Y + G +YGG Y Q L++G V
Sbjct: 68 ---AAGPQALVLAPTRELAIQVSEAFQRYAAHIPGFHVLPIYGGTSYGPQLAGLRRGAHV 124
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH+E+G++DL+ LK VLDEADEMLRMGF+EDVE IL V + +V LF
Sbjct: 125 VVGTPGRLIDHLEKGSLDLTGLKNLVLDEADEMLRMGFIEDVEKILQSVPASRQVA--LF 182
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ IS +L + +++ K +TN+ +P ++ + + I+
Sbjct: 183 SATMPGAIRKISQNYL---NEPVEISVKTKTSTATNINQRHVPVRAANKLDALTRILEVE 239
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+ I+F TK+ +LA+ L A A++GDI Q+QRE T+ R GK LVAT
Sbjct: 240 TFDA-MIVFVRTKQLTEELAEKLQARGFSAAAINGDIAQAQRERTIGHLRDGKIDILVAT 298
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS 465
+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG + E I VS
Sbjct: 299 DVAARGLDVERISHVLNYDIPHDTESYVHRVGRTGRAG-RSGEAILFVS 346
>gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448823346|ref|YP_007416511.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448276843|gb|AGE36267.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
Length = 778
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 137/338 (40%), Positives = 196/338 (57%), Gaps = 21/338 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ +++ G PIQ T +++ G D+VG A+TG GKT AF LPIL S+
Sbjct: 144 DAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPIL----------SRL 193
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDV 240
R P LVL PTRELA QV E F+ + +G + +YGG PY AQ L++G V
Sbjct: 194 NLKSRKPQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRRGAHV 253
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH+++G++D+S L+F VLDEADEML MGF EDVE IL + +V LF
Sbjct: 254 VVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQV--ALF 311
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+PS ++H+S ++L S ++ + + + N+ L + + I+
Sbjct: 312 SATMPSAIRHLSKRYLNSPQE---VTVKSTQRTAENIEQDYLIVHHREKLDALTRILEVT 368
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
I+F TK +LA+ L A A++GDI Q+QRE T+ + G+ LVAT
Sbjct: 369 DFDA-MIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVAT 427
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLD+ + + + PRD E+Y+HR GRTGRAG
Sbjct: 428 DVAARGLDVERITHVFNYDIPRDTESYVHRIGRTGRAG 465
>gi|309810396|ref|ZP_07704230.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
gi|308435636|gb|EFP59434.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
Length = 537
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 143/349 (40%), Positives = 208/349 (59%), Gaps = 13/349 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT- 172
F I + L+ KGI FPIQAMT + L G D++G+ARTG GKTL F +P+L +T
Sbjct: 37 FGIHPDIVAALEEKGIVHPFPIQAMTLPVALSGHDIIGQARTGTGKTLGFGVPLLSRVTA 96
Query: 173 -NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+KA+ G+ P +V++PTRELA QV D + G+ +YGG + Q
Sbjct: 97 PGETSKAAVPAPEGK-PQAMVVVPTRELAVQVASDLEAAAKKRGIRIAQIYGGRAFEPQV 155
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
+L+KG++V++GTPGRI D RG++DL+ + VLDEADEML +GF+ DVE IL
Sbjct: 156 ERLEKGVEVIVGTPGRIIDLATRGHLDLAYVGCLVLDEADEMLDLGFLPDVEKILAMTPG 215
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSAR 349
QT+LFSAT+P V ++ +++ + I + ++ +A T N+ V + +
Sbjct: 216 GR--QTMLFSATMPGAVVTLARRYM-TQPTHIRAMQDDASEAETASNIEQFVYRAHAMDK 272
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+++ I++ G TIIF+ TK +A++++D L A LHGD+ Q RE L F
Sbjct: 273 VEMLARILQAKDR-GLTIIFSRTKRTAAKVSDELISRGFAAAPLHGDLGQGAREQALRAF 331
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RSGK LVAT+VAARG+D+ DV +I + P D + Y+HR GRTGRAG
Sbjct: 332 RSGKVDVLVATDVAARGIDVEDVTHVINYQCPEDEKTYVHRIGRTGRAG 380
>gi|403527959|ref|YP_006662846.1| DEAD/DEAH box helicase [Arthrobacter sp. Rue61a]
gi|403230386|gb|AFR29808.1| DEAD-box ATP-dependent RNA helicase CshA [Arthrobacter sp. Rue61a]
Length = 570
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 206/368 (55%), Gaps = 7/368 (1%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
+EPE + E + + F + + E L GI FPIQAMT + L G D++
Sbjct: 19 IEPEETIISDETPHEIEEKSFADFNVRADIVESLADAGITHPFPIQAMTLPVALSGHDII 78
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
G+A+TG GKTL F +P L+ + K AP LV++PTRELA QV D
Sbjct: 79 GQAKTGTGKTLGFGIPALQRVAGRDDAGYAKLAVPGAPQALVIVPTRELAVQVANDLQAA 138
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+YGG Y Q L+KG+++V+GTPGR+ D ++ ++ L ++K +LDEA
Sbjct: 139 SRKRNARIATIYGGRAYEPQIDALQKGVEIVVGTPGRLIDLYKQKHLSLKNVKMVILDEA 198
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF+ DVE ++ QTLLFSAT+P V ++ +++ N++
Sbjct: 199 DEMLDLGFLPDVETLIAGTPAVR--QTLLFSATMPGPVIAMARRYMTQPTHIRAADPNDE 256
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GA 386
++R ++ S +++V+ I++ GRTIIFT+TK +A+++A+ L A
Sbjct: 257 GLTKRDIRQLIYRAHSMDKTEVVARILQARGR-GRTIIFTKTKRTAAKVAEELVDRGFAA 315
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A+HGD+ Q RE L FR+ K LVAT+VAARG+D++DV +I + D + Y+HR
Sbjct: 316 AAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHR 375
Query: 447 SGRTGRAG 454
GRTGRAG
Sbjct: 376 VGRTGRAG 383
>gi|119962035|ref|YP_948481.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|119948894|gb|ABM07805.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
Length = 566
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 206/368 (55%), Gaps = 7/368 (1%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
+EPE + E + + F + + E L GI FPIQAMT + L G D++
Sbjct: 19 IEPEETIISDETPHEIEEKSFADFNVRADIVESLADAGITHPFPIQAMTLPVALSGHDII 78
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
G+A+TG GKTL F +P L+ + K AP LV++PTRELA QV D
Sbjct: 79 GQAKTGTGKTLGFGIPALQRVAGRDDAGYAKLAVPGAPQALVIVPTRELAVQVANDLQAA 138
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+YGG Y Q L+KG+++V+GTPGR+ D ++ ++ L ++K +LDEA
Sbjct: 139 SRKRNARIATIYGGRAYEPQIDALQKGVEIVVGTPGRLIDLYKQKHLSLKNVKMVILDEA 198
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF+ DVE ++ QTLLFSAT+P V ++ +++ N++
Sbjct: 199 DEMLDLGFLPDVETLIAGTPAVR--QTLLFSATMPGPVIAMARRYMTQPTHIRAADPNDE 256
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GA 386
++R ++ S +++V+ I++ GRTIIFT+TK +A+++A+ L A
Sbjct: 257 GLTKRDIRQLIYRAHSMDKTEVVARILQARGR-GRTIIFTKTKRTAAKVAEELVDRGFAA 315
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A+HGD+ Q RE L FR+ K LVAT+VAARG+D++DV +I + D + Y+HR
Sbjct: 316 AAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHR 375
Query: 447 SGRTGRAG 454
GRTGRAG
Sbjct: 376 VGRTGRAG 383
>gi|220913497|ref|YP_002488806.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
gi|219860375|gb|ACL40717.1| DEAD/DEAH box helicase domain protein [Arthrobacter
chlorophenolicus A6]
Length = 694
Score = 241 bits (616), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 144/341 (42%), Positives = 195/341 (57%), Gaps = 25/341 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-----NGPTKA 178
L+ G E PIQA T ++L+G D+VG A+TG GKT AF +P L L NGP++
Sbjct: 65 LQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSRK 124
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKG 237
++ LVL PTRELA QV E F Y + T +YGG+ Y Q L++G
Sbjct: 125 TQ---------ALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRG 175
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DHI +G++DLS L++ VLDEADEMLRMGF EDVE I + + +V
Sbjct: 176 AQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPEDRQVA- 234
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P ++ +S ++L +D I + K TN+R L + + I+
Sbjct: 235 -LFSATMPGQIRRMSKQYL-NDPAEISV--KTKTSTGTNIRQRYLQIMGPQKLDAMTRIL 290
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G I F TK + LAD L A A++GDI Q QRE T+ + G+ L
Sbjct: 291 EVEEFDG-VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDIL 349
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG
Sbjct: 350 VATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAG 390
>gi|374307851|ref|YP_005054282.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
Length = 539
Score = 241 bits (616), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 140/347 (40%), Positives = 202/347 (58%), Gaps = 19/347 (5%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
+ F IS ++ L+ G E IQ + + +G DL+G+++TG GKT AF +PIL+++
Sbjct: 5 TEFNISKEIQMALEQLGFEEATIIQELAIPIATEGKDLIGQSQTGTGKTFAFGIPILDNI 64
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
LV+ PTRELA QV +FD + + +YGG Q
Sbjct: 65 LQNN---------NHQIQALVICPTRELAVQVSNEFDKLTAFTKIRNIAVYGGEYIDKQI 115
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
LKK + +VIGTPGRI DHIER I L ++F VLDEADEML MGF+ED+E IL E
Sbjct: 116 KGLKKKVQIVIGTPGRILDHIERKTIKLDHVRFVVLDEADEMLDMGFIEDIENILR--ET 173
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
+ + QT+LFSAT+P+ + +S K+LK+ + V N+ M + I + ++ +S+
Sbjct: 174 SEERQTMLFSATMPAEILSLSKKYLKNPEMI--RVKNKTMTVD-QIEQIYMKVKNADKSE 230
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ SS + IIF TK+ +L + ALHGD++Q +R++ L FR
Sbjct: 231 VLSRILQLESS-KKAIIFCNTKKMVDELVVDMQNRGYAVEALHGDLKQQKRDMVLNRFRE 289
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G+ L+AT+VAARGLDI DV L+I + P + E Y+HR GRTGRAG
Sbjct: 290 GQISMLIATDVAARGLDIRDVDLVINYDLPIEEEQYVHRIGRTGRAG 336
>gi|238897556|ref|YP_002923235.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229465313|gb|ACQ67087.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 598
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 156/398 (39%), Positives = 222/398 (55%), Gaps = 34/398 (8%)
Query: 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
E P + S+ +S + L G E PIQ +L+GSD++G A+TG GKT AF L
Sbjct: 4 ELPISFSKLGLSPSILSALTDLGYEKPSPIQLECIPHLLNGSDVLGMAQTGSGKTAAFGL 63
Query: 166 PILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGG 224
P+L+++ K K AP +LVL PTRELA QV + + + G+ LYGG
Sbjct: 64 PLLQNI-----KPDIK-----APQILVLAPTRELAVQVAQALTNFSKYMKGINVLALYGG 113
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PYH Q L++G +V+GTPGR+ DH++RG ++LSSL VLDEADEMLRMGF+EDVE
Sbjct: 114 QPYHVQLKALRQGPQIVVGTPGRLLDHLKRGTLNLSSLTGLVLDEADEMLRMGFIEDVEN 173
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
IL K+ + QT LFSAT+P ++ I+ +F+K + K + + N K N + P
Sbjct: 174 ILAKIPAEH--QTALFSATMPDAIRRITRRFMK-EPKEVRIHSNVTTKPDINQSY--WPV 228
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREV 400
++Q + + IIF TK + ++A+ L + AL+GD+ QS RE
Sbjct: 229 FGMRKNQALVRFLEVEDFDA-AIIFVRTKNATLEVAEALEDSGYNSAALNGDMNQSLREQ 287
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------ 454
TL + G+ L+AT+VAARGLD++ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 288 TLERLKDGRLDILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAL 347
Query: 455 --VEAAE-----TITQVSDSVIPAFKSAAEELLNNSGL 485
VE E I +V IP + ELL+ L
Sbjct: 348 LFVENRERRLLKNIERVIKQPIPEIQLPKAELLSQRRL 385
>gi|429765111|ref|ZP_19297415.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
celatum DSM 1785]
gi|429186973|gb|EKY27897.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
celatum DSM 1785]
Length = 542
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/326 (42%), Positives = 194/326 (59%), Gaps = 21/326 (6%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQA + L G+DL+G+A+TG GKT AF LP++ +LT A ++L
Sbjct: 37 IQAEAIPVALAGNDLIGQAQTGTGKTAAFGLPMINNLT-----------VKNAIGSIILA 85
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA QVH++ L +YGGAP H Q LKK ++V+GTPGR+ DHI R
Sbjct: 86 PTRELAIQVHDELVKLTKYEKLNIVAVYGGAPIHLQARDLKKA-NIVVGTPGRVLDHIRR 144
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
GN+ LSS++F VLDEADEML MGF++D+E I+ + + QTLLFSAT+P +K +S K
Sbjct: 145 GNLPLSSVEFLVLDEADEMLNMGFIDDMEEIMKSIPEER--QTLLFSATMPPQIKKLSKK 202
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKE 374
+LK D K + + E M ST ++ +S R + + +I + + IIF TK+
Sbjct: 203 YLKDDAKHVAIAKKE-MTGST-IKQNFFEVHNSQRLEALCRLID-FDNPTAGIIFCRTKK 259
Query: 375 SASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430
L + +HGD+ Q QR TLA F++G LVAT+VAARG+D++ V
Sbjct: 260 GVDDLVAAMQARGYMVEGMHGDMSQVQRMKTLAKFKNGSLKFLVATDVAARGIDVDGVTH 319
Query: 431 IIQCEPPRDVEAYIHRSGRTGRAGVE 456
+ E P+DVE+Y+HR GRTGRAG E
Sbjct: 320 VFNYELPQDVESYVHRIGRTGRAGRE 345
>gi|318040201|ref|ZP_07972157.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0101]
Length = 537
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/353 (40%), Positives = 206/353 (58%), Gaps = 23/353 (6%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P+ + F + L + L + G E PIQ +L G DLVG+A+TG GKT AF LP+
Sbjct: 77 PSGFASFGFAPELLDALTAIGYEEPSPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPM 136
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAP 226
L +L G R P VLVL PTRELA QV + F Y + L LYGG+
Sbjct: 137 LAALD----------GQQRTPQVLVLTPTRELAIQVADAFKSYAANMPHLRVLPLYGGSD 186
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
+ Q +LK+G+ +V+GTPGR+ DH+ +G +DLS L+ VLDEADEMLRMGF++DVE +L
Sbjct: 187 FRDQIVRLKRGVQIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVEWVL 246
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK-TIDLVGNEKMKASTNVRHIVLPCS 345
++ ++ Q +LFSAT+P ++ IS K+L + TI G + S+ +R + +
Sbjct: 247 EQL--PSQRQVVLFSATMPPEIRRISHKYLNDPAEVTIKTKGAD----SSRIRQRFITVN 300
Query: 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVT 401
+ + + ++ + G IIF TK +A+ L L+GD+ QSQRE T
Sbjct: 301 GPQKLEALTRVLESETKEG-VIIFARTKAITVTVAEALEAKGYDVAVLNGDVAQSQRERT 359
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ ++G LVAT+VAARGLD++ + L++ + P D EAY+HR GRTGRAG
Sbjct: 360 IERLKNGTVDVLVATDVAARGLDVDRITLVVNYDIPFDSEAYVHRVGRTGRAG 412
>gi|384515128|ref|YP_005710220.1| hypothetical protein CULC809_00587 [Corynebacterium ulcerans 809]
gi|334696329|gb|AEG81126.1| hypothetical protein CULC809_00587 [Corynebacterium ulcerans 809]
Length = 441
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 221/385 (57%), Gaps = 18/385 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S H + ++ + + L +GI F IQ +T + LDG D++G+ARTG GKTL F
Sbjct: 4 STHKPTFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFG 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P+L+ + + A+ P LV++PTRELA+QV ED ++ + +YGG
Sbjct: 64 VPLLDRVFD----AADVAELDGTPRALVVVPTRELAQQVGEDLELAARHTPVRVTTVYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L KG+DVV GTPGR+ D ++G++ L + VLDEADEML +GF D+E
Sbjct: 120 RPYEEQIHVLDKGVDVVAGTPGRLIDLHQQGHLILDHVAILVLDEADEMLDLGFFPDIEK 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVL 342
+LG + ++ QTLLFSAT+P V ++ F+ + I + E + T+ + +V
Sbjct: 180 LLGAL--THQHQTLLFSATMPGPVLTLARTFM---LRPIHIRAEEVNASHTHASIEQVVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
++ + ++ + G+TIIFT TK +A++LA+ L G +HGD+ Q+ R
Sbjct: 235 QAHRMDKTAITARALQAHER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458
E++L+ FR + LVAT+VAARGLDI+DV +I + P D Y+HR GRTGRAG
Sbjct: 294 ELSLSMFRDSRVDILVATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAG-HTG 352
Query: 459 ETITQVSDSVIPAFKSAAEEL-LNN 482
IT V + +K ++EL L+N
Sbjct: 353 TAITLVGYDELTKWKIISDELGLDN 377
>gi|33865454|ref|NP_897013.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102]
gi|33632623|emb|CAE07435.1| probable ATP-dependent RNA helicase DeaD [Synechococcus sp. WH
8102]
Length = 598
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 148/347 (42%), Positives = 201/347 (57%), Gaps = 23/347 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S L + L KG PIQ F ++ G DLVG+A+TG GKT AF LP+LE L +
Sbjct: 50 FGFSEALLKTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLAS 109
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLYGGAPYHAQEF 232
G +KT P LVL PTRELA QV + F Y G L +YGG + +Q
Sbjct: 110 G-----QKT-----PQALVLAPTRELAMQVADSFKAYSAGHPHLKVLAVYGGTDFRSQIN 159
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G+DVV+GTPGR+ DH+ +G +D S L+ VLDEADEMLRMGF++DVE IL ++
Sbjct: 160 TLRRGVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILEQL--P 217
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-Q 351
+ Q +LFSAT+P ++ +S ++LK D + + ++ R I +P + Q
Sbjct: 218 QERQVVLFSATMPPEIRRLSKRYLK-DPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQ 276
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRS 407
+ D C G IIF TK +A+ L L+GD+ Q+QRE T+ RS
Sbjct: 277 RVLDA--CGGEG--VIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRS 332
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG
Sbjct: 333 GSVDILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAG 379
>gi|379714822|ref|YP_005303159.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
316]
gi|386739884|ref|YP_006213064.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
31]
gi|387138142|ref|YP_005694121.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|387140160|ref|YP_005696138.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
1/06-A]
gi|389849889|ref|YP_006352124.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
258]
gi|349734620|gb|AEQ06098.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|355391951|gb|AER68616.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
1/06-A]
gi|377653528|gb|AFB71877.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
316]
gi|384476578|gb|AFH90374.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
31]
gi|388247195|gb|AFK16186.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
258]
Length = 441
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 218/381 (57%), Gaps = 17/381 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S H + ++ + + L +GI F IQ +T + LDG D++G+ARTG GKTL F
Sbjct: 4 STHKPTFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFG 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P+L+ + + A+ P LV++PTRELA+QV ED + + +YGG
Sbjct: 64 VPLLDRVFD----AADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L G+DVV+GTPGR+ D ++GN+ L + VLDEADEML +GF D+E
Sbjct: 120 RPYEEQIQVLAAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEK 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVL 342
+LG ++ ++ QTLLFSAT+P V ++ F+ + I + E + T+ + +V
Sbjct: 180 LLGALK--HQHQTLLFSATMPGPVLTLARTFM---SRPIHIRAEEVNASHTHASIEQVVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
++ + ++ G+TIIFT TK +A++LA+ L G +HGD+ Q+ R
Sbjct: 235 QAHRMDKTAITARALQAKER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458
E++L FR+G+ LVAT+VAARGLDI+DV +I + P D Y+HR GRTGRAG
Sbjct: 294 ELSLGMFRNGRVDILVATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAG-HTG 352
Query: 459 ETITQVSDSVIPAFKSAAEEL 479
IT V + +K ++EL
Sbjct: 353 TAITLVGYDELIKWKLISDEL 373
>gi|399524825|ref|ZP_10765330.1| DEAD/DEAH box helicase [Atopobium sp. ICM58]
gi|398373862|gb|EJN51687.1| DEAD/DEAH box helicase [Atopobium sp. ICM58]
Length = 609
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/356 (38%), Positives = 208/356 (58%), Gaps = 7/356 (1%)
Query: 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
GE+ + + F ++ P+ + L KGI FPIQA+T LD D++G+A+TG GKTL
Sbjct: 65 GENLDKKSFADFGVTDPIVDALDDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLG 124
Query: 163 FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
F +P+LE + + + P L++LPTREL KQV +D + +Y
Sbjct: 125 FGIPVLEDVIAPDEEGYEDLLNPNQPQALIILPTRELTKQVAQDLRDAAKYLSTRIVEIY 184
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG + Q L +G D+V+GTPGR+ D + +G++ LS ++ VLDEADEML +GF+ DV
Sbjct: 185 GGVAFEPQIEALTRGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDV 244
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E +L +V + N+ T+LFSAT+P V ++ +F+ +++ + V+ ++
Sbjct: 245 ETLLARVPE-NR-HTMLFSATMPGPVVALARRFMVHPTHIRAQDPDDQNQTVNTVKQVIY 302
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
+ + +V+ I++ G RT+IF TK +A++L + L ALHGD+ Q R
Sbjct: 303 RVHAMNKVEVVARILQAEGRG-RTVIFCRTKRTAARLGEDLTDRGFAVGALHGDLGQGAR 361
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E L FR+GK LVAT+VAARG+D++DV +I + P D + YIHR GRTGRAG
Sbjct: 362 EQALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAG 417
>gi|227494914|ref|ZP_03925230.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
gi|226831366|gb|EEH63749.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
Length = 528
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 203/347 (58%), Gaps = 10/347 (2%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F I+ + + L +KGI FPIQA+T + L G D++G+A+TG GKTL F LP L + +
Sbjct: 47 FGINTEICDALSAKGITYPFPIQALTLPVALAGRDIIGQAKTGTGKTLGFGLPTLMKV-H 105
Query: 174 GPTKASKKT--GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
GP A T Y P +V++PTREL KQV D + +YGGA + Q
Sbjct: 106 GPASAKYATEVHYQGHPQAMVIVPTRELCKQVAADLRAAAKQTSVRITEIYGGAAFEPQI 165
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L KG D+++GTPGR+ D ++R + L + VLDEADEML +GF+ DVE++L +V
Sbjct: 166 DALTKGTDLIVGTPGRLIDLLKRKVLQLHGVNTVVLDEADEMLDLGFLPDVEILLSRVPQ 225
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
QT+LFSAT+P + ++ +++K +++ V+ ++ C + + +
Sbjct: 226 TR--QTMLFSATMPGEIVALARRYMKQPTHIRAQEADDQGATVKTVKQVIYRCHALNKIE 283
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ G +IFT+TK +A+ L++ L +LHGD+ Q RE + FRS
Sbjct: 284 VVARILQARER-GLAVIFTKTKRTAATLSEDLSARGFAVASLHGDLGQGAREQAMRAFRS 342
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
GK LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG
Sbjct: 343 GKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYLHRIGRTGRAG 389
>gi|399527936|ref|ZP_10767613.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
gi|398361526|gb|EJN45278.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
Length = 588
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 210/357 (58%), Gaps = 7/357 (1%)
Query: 102 RGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
+GE + + F ++ P+ + L+ KGI FPIQA+T LD D++G+A+TG GKTL
Sbjct: 56 KGEDLDKKSFADFGVTDPIVDALEDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTL 115
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221
F +P+LE + + + P L++LPTREL KQV +D + +
Sbjct: 116 GFGIPVLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTRIVEI 175
Query: 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281
YGG + Q L++G D+V+GTPGR+ D + +G++ LS ++ VLDEADEML +GF+ D
Sbjct: 176 YGGVAFEPQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPD 235
Query: 282 VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341
VE +L +V + N+ T+LFSAT+P V ++ +F+ +++ + V+ ++
Sbjct: 236 VETLLSRVPE-NR-HTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVI 293
Query: 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQ 397
+ + +V+ I++ G RT+IF TK +A++L + L +LHGD+ Q
Sbjct: 294 YRVHAMNKVEVVARILQAEGRG-RTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGA 352
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RE L FR+GK LVAT+VAARG+D++DV +I + P D + YIHR GRTGRAG
Sbjct: 353 REQALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAG 409
>gi|452910044|ref|ZP_21958727.1| Cold-shock DEAD-box protein A [Kocuria palustris PEL]
gi|452835004|gb|EME37802.1| Cold-shock DEAD-box protein A [Kocuria palustris PEL]
Length = 606
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/343 (41%), Positives = 205/343 (59%), Gaps = 29/343 (8%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-----NGPTKA 178
L++ G E PIQ T ++L+G D+VG A+TG GKT AF +P L L NGP+ +
Sbjct: 30 LEAIGYEKPSPIQEATIPVLLEGRDVVGMAQTGTGKTAAFAVPALSRLAELADLNGPSTS 89
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGL---TSCCLYGGAPYHAQEFKLK 235
++ VLVL PTRELA QV E F Y AV L T +YGG+ Y Q L+
Sbjct: 90 TQ---------VLVLAPTRELALQVGEAFASY--AVQLEDFTVLPVYGGSSYGPQLAGLR 138
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
+G VV+GTPGR+ DH++RG++ L L++ VLDEADEMLRMGF EDVE IL + + +V
Sbjct: 139 RGAQVVVGTPGRVIDHLKRGSLKLDDLQYLVLDEADEMLRMGFAEDVETILSQTPEDKQV 198
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
LFSAT+P ++ I+ ++L++ + ++ K +TN+R L + + + +
Sbjct: 199 A--LFSATMPPAIRKIAQRYLRNPE---EISVKAKTSTATNIRQRYLQVMGAHKLEAMTR 253
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFRSGKFM 411
++ G I+F TK + ++A+ L A A++GDI Q RE ++ RSGK
Sbjct: 254 LLEVEEHDG-IIVFVRTKAATEEVAEKLRARGHAATAINGDIPQQAREKSVEQLRSGKID 312
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 313 ILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAG 355
>gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase [Meiothermus ruber DSM 1279]
gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
Length = 556
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 145/347 (41%), Positives = 202/347 (58%), Gaps = 21/347 (6%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F + + + +++KG + PIQA + L+G D++G+ARTG GKTLAF +PI L
Sbjct: 4 SAFTLRPEVAQAIQAKGFTTATPIQAAAIPLALEGKDVLGQARTGTGKTLAFGIPIANRL 63
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ GRAP L+L PTRELA QV ++ + A LT +YGG Y Q
Sbjct: 64 DAARER-------GRAPRALILTPTRELALQVAKELEWL--APHLTITPIYGGTGYGKQA 114
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
LK+G DVV+ TPGR D++E+ +DLS ++ VLDEADEML MGF E VE +L
Sbjct: 115 EALKRGTDVVVATPGRAIDYLEQRVLDLSRIEIAVLDEADEMLSMGFEEAVEQLLEATPP 174
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
QTLLFSATLP+W + +S ++ K+ I+++ +E + + + + R
Sbjct: 175 TR--QTLLFSATLPTWARRLSERYQKAAIH-INVIKDEAI----SYEEVAIQAPIHNRLS 227
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRS 407
V+ D++ Y+ RTI+FT TK + LA L A +HGD+ Q RE + FRS
Sbjct: 228 VLSDLLFAYAPE-RTIVFTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRS 286
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G LVAT+VAARGLDI +V L++ P E+Y+HRSGRTGRAG
Sbjct: 287 GAVSVLVATDVAARGLDIPEVDLVVHYRLPDQNESYLHRSGRTGRAG 333
>gi|124026185|ref|YP_001015301.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. NATL1A]
gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
NATL1A]
Length = 589
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 147/351 (41%), Positives = 199/351 (56%), Gaps = 21/351 (5%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
N S F S L + + KG S PIQ +L G DLVG+A+TG GKT AF LPIL
Sbjct: 36 NGFSEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPIL 95
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLYGGAPY 227
E L K G+ P VLVL PTRELA QV E F Y G +YGG+ +
Sbjct: 96 ERL-------KKNVGH---PQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDF 145
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q L++G+DVV+GTPGR+ DH+ + ++ S L VLDEADEMLRMGF++DVE IL
Sbjct: 146 RNQINTLRRGVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILE 205
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
++ + Q +LFSAT+PS ++ +S K+L S + + ++K +R + +
Sbjct: 206 QLPEER--QLVLFSATMPSEIRRLSKKYLNSPAEIT--IKATELKERL-IRQRYISVQNV 260
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403
+ + ++ S G IIF TK +A+ L L+GDI Q+QRE T+
Sbjct: 261 YKVNALQRVLEAVSEEG-VIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVE 319
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
R G LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG
Sbjct: 320 RLRQGSINILVATDVAARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAG 370
>gi|389806352|ref|ZP_10203483.1| DNA/RNA helicase [Rhodanobacter thiooxydans LCS2]
gi|388445572|gb|EIM01636.1| DNA/RNA helicase [Rhodanobacter thiooxydans LCS2]
Length = 643
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 210/376 (55%), Gaps = 25/376 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L+G D++G+A+TG GKT AF LPIL ++ +K G
Sbjct: 28 LADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPIL-------SRIERKAG 80
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F Y + G +YGG Y Q LK+G+ VV+
Sbjct: 81 ---KPQALVLAPTRELAIQVAEAFQTYAAHLPGFQVLPIYGGQSYGPQLHSLKRGVHVVV 137
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+++G +DLS LK+ VLDEADEMLRMGF++DVE +L +V LFSA
Sbjct: 138 GTPGRVIDHLDKGTLDLSELKYLVLDEADEMLRMGFIDDVEKVLQATPPQRQV--ALFSA 195
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ + LK +++ + N+ S + + I+
Sbjct: 196 TMPTQIRKIAQRHLKD---PVEVTIKSSTTTAANIHQRYWFVSGMHKLDALTRILEAEPF 252
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ +LA+ L A A++GDI Q QRE + + GK LVAT+V
Sbjct: 253 DA-MIIFARTKQATEELAEKLQARGLAAAAINGDIAQPQRERVIQQLKDGKLDILVATDV 311
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD---SVIPAFKSA 475
AARGLD+ + ++ + P D E+Y+HR GRTGRAG + E I VS ++ A + A
Sbjct: 312 AARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAG-RSGEAILFVSPRERGMLGAIERA 370
Query: 476 AEELLNNSGLSAAELL 491
+ + L + E++
Sbjct: 371 TRQPIEQMQLPSVEVV 386
>gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Prochlorococcus marinus str. NATL2A]
gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str.
NATL2A]
Length = 589
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 147/351 (41%), Positives = 199/351 (56%), Gaps = 21/351 (5%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
N S F S L + + KG S PIQ +L G DLVG+A+TG GKT AF LPIL
Sbjct: 36 NGFSEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPIL 95
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLYGGAPY 227
E L K G+ P VLVL PTRELA QV E F Y G +YGG+ +
Sbjct: 96 ERL-------KKNVGH---PQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDF 145
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q L++G+DVV+GTPGR+ DH+ + ++ S L VLDEADEMLRMGF++DVE IL
Sbjct: 146 RNQINTLRRGVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILE 205
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
++ + Q +LFSAT+PS ++ +S K+L S + + ++K +R + +
Sbjct: 206 QLPEER--QLVLFSATMPSEIRRLSKKYLNSPAEIT--IKATELKERL-IRQRYISVQNV 260
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403
+ + ++ S G IIF TK +A+ L L+GDI Q+QRE T+
Sbjct: 261 YKVNALQRVLEAVSEEG-VIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVE 319
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
R G LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG
Sbjct: 320 RLRQGSINILVATDVAARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAG 370
>gi|383767838|ref|YP_005446821.1| ATP-dependent RNA helicase DeaD [Phycisphaera mikurensis NBRC
102666]
gi|381388108|dbj|BAM04924.1| ATP-dependent RNA helicase DeaD [Phycisphaera mikurensis NBRC
102666]
Length = 693
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/339 (42%), Positives = 193/339 (56%), Gaps = 16/339 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA-SKKT 182
L+ G E PIQA VL G D++G+A+TG GKT AF LPIL L P S +
Sbjct: 74 LERIGYEQPSPIQAAIIPAVLSGVDVIGQAQTGTGKTAAFALPILSKLQGVPAGGGSVRF 133
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVV 241
AP+ LVL PTRELA QV E F Y + G +YGGA Y Q +G+ VV
Sbjct: 134 EAPAAPTALVLAPTRELAIQVAEAFQTYAQKMPGFHVVPVYGGADYTTQLRAFSRGVHVV 193
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ DH++RG +++ L+ VLDEADEMLRMGF+EDVE +L ++ DA Q LFS
Sbjct: 194 VGTPGRVLDHMKRGTLNVQHLQHLVLDEADEMLRMGFIEDVEYVLDEIPDA--AQVALFS 251
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P+ +K I+ LK D + I G K + R+ +P I + R
Sbjct: 252 ATMPAQIKRIAQSKLK-DPQHIRTAGKTKTAETVRQRYAYVPGRRK-----INALTRVLD 305
Query: 362 SGGR--TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+ ++F T+ + +++AD L A AL G++ Q QRE + + G+ +VA
Sbjct: 306 AEPHEAVLVFVRTRNACTEVADQLQARGHAAEALSGEVPQRQRERIVESLKDGRIDVVVA 365
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
T+VAARGLD+ V +I + P D EAYIHR GRTGRAG
Sbjct: 366 TDVAARGLDVERVGHVINYDMPTDPEAYIHRIGRTGRAG 404
>gi|50955710|ref|YP_062998.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50952192|gb|AAT89893.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 399
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/338 (42%), Positives = 200/338 (59%), Gaps = 15/338 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E+ FPIQA T ++ G D++GR RTG GKT+AF P++E L ++ K G
Sbjct: 19 LAELGAETPFPIQAATAPEIVAGRDVLGRGRTGSGKTIAFGAPMVERLMRLWAESGKSGG 78
Query: 184 ---YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
GRAP L+L PTRELA Q+ +VGL + +YGG P Q L++G+D+
Sbjct: 79 KRQTGRAPRALILAPTRELALQIDRTVQPIARSVGLFTTQIYGGVPQGRQVGALQRGVDI 138
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
VIGTPGRI+D +E+G +DLS + VLDEAD M +GF+E V+ IL + D Q LLF
Sbjct: 139 VIGTPGRIEDLVEQGRLDLSQVVISVLDEADHMCDIGFLEPVQRILRETVDGG--QKLLF 196
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SATL S V + +FL D ++ G + + S+ + H VL + +I +
Sbjct: 197 SATLDSGVAQLVDEFL-VDPSVHEVAGED--QDSSAIDHRVLVVEHREKGAIIEQL---A 250
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G+T+IF T+ A LAD L A +LHGD+ QS+R LA SG+ LVAT
Sbjct: 251 DRDGKTLIFARTRAFAEMLADNLEDAGIPAVSLHGDLNQSRRTRNLAQLTSGRVSVLVAT 310
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARG+ ++D+ L+IQ + P + + Y+HRSGRTGRAG
Sbjct: 311 DVAARGIHVDDIDLVIQADAPDEYKTYLHRSGRTGRAG 348
>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 602
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 148/373 (39%), Positives = 209/373 (56%), Gaps = 23/373 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E+ PIQA T +L G+D+VG A+TG GKT AF +P+L SK G
Sbjct: 43 LAEVGYENPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPVL----------SKIDG 92
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R P LVL PTRELA QV E F Y + +T +YGG Y Q L++G +++
Sbjct: 93 ESRTPQALVLAPTRELALQVSEAFGKYAVHMPNITVLPIYGGQSYGVQLSGLRRGAQIIV 152
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G +DLS+L+F VLDEADEML MGF EDVE IL + +V LFSA
Sbjct: 153 GTPGRVIDHLEKGTLDLSNLEFLVLDEADEMLTMGFQEDVERILADTPEFKQVA--LFSA 210
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ I+ K+L +++ K +N+ L + + + ++
Sbjct: 211 TMPPAIRKIAKKYLHD---PVEISVKAKTATGSNITQRYLQVAHQRKLDALTRLLEVEEF 267
Query: 363 GGRTIIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G IIF TK + +LA+ L A A++GDI Q+QRE T+ + GK LVAT+V
Sbjct: 268 DG-MIIFVRTKSATEELAEKLRARGHAAAAINGDIVQAQRERTIGQLKDGKVDILVATDV 326
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV--EAAETITQVSDSVIPAFKSAA 476
AARGLD+ + ++ + P D E+Y+HR GRTGRAG +A +T ++ A + A
Sbjct: 327 AARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRKGDALLFVTPRERHLLRAIEKAT 386
Query: 477 EELLNNSGLSAAE 489
+ L GL + E
Sbjct: 387 RQPLTEIGLPSVE 399
>gi|392400091|ref|YP_006436691.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
Cp162]
gi|390531169|gb|AFM06898.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
Cp162]
Length = 441
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 218/381 (57%), Gaps = 17/381 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S H + ++ + + L +GI F IQ +T + LDG D++G+ARTG GKTL F
Sbjct: 4 STHKPTFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFG 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P+L+ + + A+ P LV++PTRELA+QV ED + + +YGG
Sbjct: 64 VPLLDRVFD----AADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L G+DVV+GTPGR+ D ++GN+ L + VLDEADEML +GF D+E
Sbjct: 120 RPYEEQIQVLTAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEK 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVL 342
+LG ++ ++ QTLLFSAT+P V ++ F+ + I + E + T+ + +V
Sbjct: 180 LLGALK--HQHQTLLFSATMPGPVLTLARTFM---SRPIHIRAEEVNASHTHASIEQVVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
++ + ++ G+TIIFT TK +A++LA+ L G +HGD+ Q+ R
Sbjct: 235 QAHRMDKTAITARALQAKER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458
E++L FR+G+ LVAT+VAARGLDI+DV +I + P D Y+HR GRTGRAG
Sbjct: 294 ELSLGMFRNGRVDILVATDVAARGLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAG-HTG 352
Query: 459 ETITQVSDSVIPAFKSAAEEL 479
IT V + +K ++EL
Sbjct: 353 TAITLVGYDELIKWKLISDEL 373
>gi|116072449|ref|ZP_01469716.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
gi|116064971|gb|EAU70730.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
Length = 607
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 150/347 (43%), Positives = 202/347 (58%), Gaps = 23/347 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S L + L KG PIQ F ++ G DLVG+A+TG GKT AF LP+LE L +
Sbjct: 62 FGFSEALLKTLAEKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLES 121
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEF 232
G +KT P VLVL PTRELA QV + F Y G L +YGG + +Q
Sbjct: 122 G-----RKT-----PQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQIS 171
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G+DVV+GTPGR+ DH+ +G +D S L VLDEADEMLRMGF++DVE IL ++
Sbjct: 172 TLRRGVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQL--P 229
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-Q 351
+ Q +LFSAT+P ++ +S ++L +D + + ++ R I +P S + Q
Sbjct: 230 KERQVVLFSATMPPEIRRLSKRYL-NDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQ 288
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRS 407
+ D C G IIF TK +A+ L A L+GD+ Q+QRE T+ RS
Sbjct: 289 RVLDA--CGGEG--VIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRS 344
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G LVAT+VAARGLD+ + L+I + P D EAY+HR GRTGRAG
Sbjct: 345 GSVDILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAG 391
>gi|380302038|ref|ZP_09851731.1| DNA/RNA helicase, superfamily II [Brachybacterium squillarum M-6-3]
Length = 594
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/345 (40%), Positives = 202/345 (58%), Gaps = 8/345 (2%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + E L SKGI FPIQ+MT + L G D++G+A+TG GKTL F +P+L+S T
Sbjct: 49 FDVREDIVEALSSKGIIHPFPIQSMTLPVALKGRDIIGQAKTGTGKTLGFGIPLLQS-TV 107
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
P + + P LV+LPTRELA QV ED + +YGG Y Q
Sbjct: 108 APGEDNPTGRVIGKPQALVVLPTRELAVQVAEDLQDASAKRPVRILTVYGGRAYEPQIEA 167
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L+KG+DVV+GTPGR+ D + + +DLS ++ VLDEADEML +GF+ED+E +L V +
Sbjct: 168 LEKGVDVVVGTPGRLIDLMRQKYLDLSQVRTAVLDEADEMLDLGFLEDIEKLLRAVPE-- 225
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
K QT+LFSAT+P + ++ +F+ + + +++ +V + +V+
Sbjct: 226 KRQTMLFSATMPGPILALARRFMTQPTHIRAHDPGDVSRTKADIKQVVYRAHQLDKIEVL 285
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
+++ G TI+F TK A ++A+ L A LHGD+ Q RE L FR+GK
Sbjct: 286 ARVLQSRGR-GLTIVFMRTKRQADRVAEDLQKRGFAAAPLHGDLGQGAREQALRAFRNGK 344
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARG+D++DV +I P D + Y+HR+GRTGRAG
Sbjct: 345 VDVLVATDVAARGIDVDDVTHVINWNSPDDDKTYLHRTGRTGRAG 389
>gi|389755594|ref|ZP_10191274.1| DNA/RNA helicase [Rhodanobacter sp. 115]
gi|388432201|gb|EIL89216.1| DNA/RNA helicase [Rhodanobacter sp. 115]
Length = 596
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 148/373 (39%), Positives = 206/373 (55%), Gaps = 23/373 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L+G D++G+A+TG GKT AF LPIL + P K
Sbjct: 4 LTDVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRIDLKPGK------ 57
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F Y + GL +YGG Y Q L++G+ VV+
Sbjct: 58 ----PQALVLAPTRELAIQVAEAFQRYAAHMPGLQVLPIYGGQSYGPQLHALRRGVQVVV 113
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+++G +DLS LK+ VLDEADEMLRMGF++DVE +L +V LFSA
Sbjct: 114 GTPGRVIDHLDKGTLDLSELKYLVLDEADEMLRMGFIDDVEKVLQATPPERQVA--LFSA 171
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ K LK +++ + N+R S + + I+
Sbjct: 172 TMPTVIRKIAQKHLKD---PVEITIKAATTTAANIRQRYWFVSGLHKLDAMTRILEAEPF 228
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ +LA+ L A A++GDI Q QRE + + GK LVAT+V
Sbjct: 229 DA-MIIFARTKQATEELAEKLSARGLAAAAINGDIAQPQRERVIQQLKDGKLDILVATDV 287
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV--EAAETITQVSDSVIPAFKSAA 476
AARGLD+ + ++ + P D E+Y+HR GRTGRAG EA +T ++ A + A
Sbjct: 288 AARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREKGMLHAIERAT 347
Query: 477 EELLNNSGLSAAE 489
+ + L E
Sbjct: 348 RQRIEEMKLPTVE 360
>gi|373253040|ref|ZP_09541158.1| DEAD/DEAH box helicase [Nesterenkonia sp. F]
Length = 644
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 149/399 (37%), Positives = 218/399 (54%), Gaps = 22/399 (5%)
Query: 62 EERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLR 121
+ER ET+ EP + + + + ++ ++E E + ES P A + +
Sbjct: 11 DERQETA----EPASTEEQNPQTEQTTEQMEESVSSETPAKTESAEP-AFHTLGLDHRVM 65
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ G + IQA T ++ G D+VG A+TG GKT AF LP L SL A
Sbjct: 66 AVVDRMGYATPTAIQARTIPLLNQGRDVVGLAQTGTGKTAAFALPTLSSLA-----AEHD 120
Query: 182 TG-YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGID 239
G R P LVL PTRELA QV + F Y V G+T +YGGAPY Q L++G
Sbjct: 121 AGQLTRTPKALVLAPTRELALQVADAFSTYAADVDGVTVLPIYGGAPYGPQLDGLRRGAQ 180
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ DH++RG++DLS ++ VLDEADEMLRMGF E+V+ IL K + +V L
Sbjct: 181 VVVGTPGRVIDHMQRGSLDLSGIEHLVLDEADEMLRMGFAEEVDQILAKTPASKQVA--L 238
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P ++ IS +L +++ E S+ + + A+ + I+
Sbjct: 239 FSATMPKAIRRISADYLND---PVEVSVKEATSTSSTISQRYVQVKHHAKGDALVRIMET 295
Query: 360 YSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+ G I+F T+ + ++A+ L A A++GD+ Q RE T+ R+G+ LVA
Sbjct: 296 ETQDG-AIVFVRTRAATEEVAEKLTARGFRAAAINGDVPQKLREKTVENLRAGRVDVLVA 354
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
T+VAARGLD+ + + + P D E+Y+HR GRTGRAG
Sbjct: 355 TDVAARGLDVERISHVYNYDIPMDTESYVHRIGRTGRAG 393
>gi|89256685|ref|YP_514047.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
holarctica LVS]
gi|115315095|ref|YP_763818.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|156502845|ref|YP_001428910.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254367994|ref|ZP_04984014.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
holarctica 257]
gi|290954278|ref|ZP_06558899.1| DEAD/DEAH box helicase domain-containing protein [Francisella
tularensis subsp. holarctica URFT1]
gi|422939018|ref|YP_007012165.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
FSC200]
gi|423051056|ref|YP_007009490.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
F92]
gi|89144516|emb|CAJ79831.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
holarctica LVS]
gi|115129994|gb|ABI83181.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|134253804|gb|EBA52898.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
holarctica 257]
gi|156253448|gb|ABU61954.1| DEAD/DEAH box helicase domain protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|407294169|gb|AFT93075.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
subsp. holarctica FSC200]
gi|421951778|gb|AFX71027.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
F92]
Length = 569
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/334 (42%), Positives = 196/334 (58%), Gaps = 19/334 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASR----DRA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V + + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVQFVLSHVSE--QCQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
+D+ + +I + P D + Y+HR GRTGRAG E
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGRE 345
>gi|15221998|ref|NP_175911.1| DEAD-box ATP-dependent RNA helicase 20 [Arabidopsis thaliana]
gi|75333448|sp|Q9C718.1|RH20_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 20
gi|12321578|gb|AAG50841.1|AC073944_8 ethylene-responsive RNA helicase, putative [Arabidopsis thaliana]
gi|17065338|gb|AAL32823.1| Unknown protein [Arabidopsis thaliana]
gi|22136216|gb|AAM91186.1| unknown protein [Arabidopsis thaliana]
gi|332195071|gb|AEE33192.1| DEAD-box ATP-dependent RNA helicase 20 [Arabidopsis thaliana]
Length = 501
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 146/394 (37%), Positives = 219/394 (55%), Gaps = 22/394 (5%)
Query: 108 PNAVSRFR-ISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
P V FR + P + E++K G PIQ+ + M + G DL+G A TG GKTL+++
Sbjct: 95 PKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYL 154
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
LP + + P A +G P VLVL PTRELA Q+ ++ +G + + + C+YGG
Sbjct: 155 LPAIVHVNAQPMLA-----HGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGG 209
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
P Q L+KG+++VI TPGR+ D +E N +L + + VLDEAD ML MGF +
Sbjct: 210 VPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRK 269
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
I+ + QTL +SAT P V+ +S KFL + K I +G+ +KA+ +R IV
Sbjct: 270 IVSHIRPDR--QTLYWSATWPKEVEQLSKKFLYNPYKVI--IGSSDLKANRAIRQIVDVI 325
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-----DLLPGARALHGDIQQSQRE 399
S S + + ++ G R ++F +TK+ Q+ D P A ++HGD Q++R+
Sbjct: 326 SESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWP-ALSIHGDKSQAERD 384
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE-AA 458
L+ FRSGK + AT+VAARGLD+ DV+ +I + P +E Y+HR GRTGRAG + A
Sbjct: 385 WVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA 444
Query: 459 ETITQVSDSVIPAFKSAAEELLNNSGLSAAELLA 492
T V+++ F +L +G + LA
Sbjct: 445 YTFFTVANA---RFAKELTNILQEAGQKVSPELA 475
>gi|387887011|ref|YP_006317310.1| DEAD/DEAH box helicase [Francisella noatunensis subsp. orientalis
str. Toba 04]
gi|386871827|gb|AFJ43834.1| DEAD-box subfamily ATP-dependent helicase [Francisella noatunensis
subsp. orientalis str. Toba 04]
Length = 583
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 196/334 (58%), Gaps = 19/334 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP++ ++ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNM--------DLESRDRA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + + L C+YGG Y +Q LK+GI VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNIPNLNVVCIYGGQEYGSQIRALKQGIKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV +L V D + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSD--ECQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIQEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLEVEETDG-V 251
Query: 367 IIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L G R A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVLVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
+D+ + +I + P D + Y+HR GRTGRAG E
Sbjct: 312 IDLERISHVINYDMPNDSDTYVHRIGRTGRAGRE 345
>gi|404444837|ref|ZP_11009988.1| DNA/RNA helicase [Mycobacterium vaccae ATCC 25954]
gi|403653206|gb|EJZ08205.1| DNA/RNA helicase [Mycobacterium vaccae ATCC 25954]
Length = 562
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 192/331 (58%), Gaps = 20/331 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L GSD+VG A+TG GKT AF +PIL SK R
Sbjct: 32 GYESPSPIQAATIPAILAGSDVVGLAQTGTGKTAAFAIPIL----------SKIDTDSRT 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
LVL PTRELA QV E F YG + + +YGG+ Y Q LK+G VV+GTPGR
Sbjct: 82 TQALVLAPTRELALQVAEAFGRYGAKLRVNVLPIYGGSSYVPQLAGLKRGAQVVVGTPGR 141
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ DH+E+G++DLS L + VLDEADEML+MGF EDVE IL + +V LFSAT+P
Sbjct: 142 VIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVA--LFSATMPPA 199
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
+K I+ K+L +++ K + + N+ S + + ++ G I
Sbjct: 200 IKKITAKYLHD---PVEVTVKSKTQTAENITQRYYQVSYPRKMDALTRLLET-EQGDAMI 255
Query: 368 IFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
+F TK++ ++A+ L A A++GDI Q+ RE T++ + G LVAT+VAARGL
Sbjct: 256 VFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDGTIDILVATDVAARGL 315
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
D+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 316 DVERISHVVNFDIPHDPESYVHRIGRTGRAG 346
>gi|420153565|ref|ZP_14660520.1| DEAD/DEAH box helicase, partial [Actinomyces massiliensis F0489]
gi|394758926|gb|EJF41752.1| DEAD/DEAH box helicase, partial [Actinomyces massiliensis F0489]
Length = 528
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 146/362 (40%), Positives = 213/362 (58%), Gaps = 12/362 (3%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKASKKT 182
L GI FPIQA+ + L G D++G+A+TG GKTL F LP+L ++L G +
Sbjct: 87 LAGHGITHPFPIQALALPVALGGQDIIGQAKTGTGKTLGFALPLLMDTLGPGEDGWDEDP 146
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
G +P L++LPTRELAKQV E+ + + +YGG Y Q L KG +VV+
Sbjct: 147 ASG-SPQALIVLPTRELAKQVAEELTMAAAKRTVRIVQVYGGRAYEPQIEALSKGAEVVV 205
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ D ++RG +DL+ + VLDEADEML +GF+ DVE IL + QT+LFSA
Sbjct: 206 GTPGRLIDLMDRGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTR--TDRQTMLFSA 263
Query: 303 TLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
T+P V ++ +++ K G+E M +T V+ +V + + +V+ I++ +
Sbjct: 264 TMPGAVVALARRYMSKPTHIRAQDPGDEGMTVTT-VQQVVYRTHALNKVEVVSRILQA-A 321
Query: 362 SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
GRTIIF TK + +++A+ L ALHGD+ Q RE L FR+GK LVAT+
Sbjct: 322 GRGRTIIFARTKRTCARVAEDLAARGFATAALHGDLGQGAREQALRAFRNGKVDVLVATD 381
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAE 477
VAARG+D++DV +I + P D + Y+HR GRTGRAG ++ +T V P ++ A+
Sbjct: 382 VAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAG-QSGTAVTFVDWDDTPRWRMIAK 440
Query: 478 EL 479
L
Sbjct: 441 AL 442
>gi|56708511|ref|YP_170407.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670982|ref|YP_667539.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis FSC198]
gi|254371138|ref|ZP_04987140.1| hypothetical protein FTBG_00898 [Francisella tularensis subsp.
tularensis FSC033]
gi|254875360|ref|ZP_05248070.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379717740|ref|YP_005306076.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis TIGB03]
gi|379726344|ref|YP_005318530.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis TI0902]
gi|385795189|ref|YP_005831595.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis NE061598]
gi|421756125|ref|ZP_16193052.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis 80700075]
gi|56605003|emb|CAG46104.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110321315|emb|CAL09487.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis FSC198]
gi|151569378|gb|EDN35032.1| hypothetical protein FTBG_00898 [Francisella tularensis subsp.
tularensis FSC033]
gi|254841359|gb|EET19795.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159724|gb|ADA79115.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis NE061598]
gi|377827793|gb|AFB81041.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis TI0902]
gi|377829417|gb|AFB79496.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis TIGB03]
gi|409085703|gb|EKM85836.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis 80700075]
Length = 569
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/334 (42%), Positives = 196/334 (58%), Gaps = 19/334 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASR----DRA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V + + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSE--QCQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
+D+ + +I + P D + Y+HR GRTGRAG E
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGRE 345
>gi|297847866|ref|XP_002891814.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
lyrata]
gi|297337656|gb|EFH68073.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
lyrata]
Length = 501
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 146/394 (37%), Positives = 218/394 (55%), Gaps = 22/394 (5%)
Query: 108 PNAVSRFR-ISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
P V FR + P + E++K G PIQ+ + M + G DL+G A TG GKT++++
Sbjct: 95 PKPVKSFRDVGFPDYVLEEIKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTISYL 154
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
LP + + P A G P VLVL PTRELA Q+ ++ +G + + S C+YGG
Sbjct: 155 LPAIVHVNAQPILAP-----GDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKSTCIYGG 209
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
P Q L+KG+++VI TPGR+ D +E N +L + + VLDEAD ML MGF +
Sbjct: 210 VPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRK 269
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
I+ + QTL +SAT P V+ +S KFL + K I +G+ +KA+ +R IV
Sbjct: 270 IVSHIRPDR--QTLYWSATWPKEVEQLSKKFLYNPYKVI--IGSSDLKANRAIRQIVDVI 325
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-----DLLPGARALHGDIQQSQRE 399
S S + + ++ G R ++F +TK+ Q+ D P A ++HGD Q++R+
Sbjct: 326 SESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWP-ALSIHGDKSQAERD 384
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE-AA 458
L+ FRSGK + AT+VAARGLD+ DV+ +I + P +E Y+HR GRTGRAG + A
Sbjct: 385 WVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA 444
Query: 459 ETITQVSDSVIPAFKSAAEELLNNSGLSAAELLA 492
T V+++ F +L +G + LA
Sbjct: 445 YTFFTVANA---RFAKELSNILEEAGQKVSPELA 475
>gi|328876634|gb|EGG24997.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 806
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/367 (36%), Positives = 205/367 (55%), Gaps = 17/367 (4%)
Query: 108 PNAVSRFRIS-VP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
PN ++ F S P + ++ G + IQ ++ + L G D++G A TG GKTLAF+
Sbjct: 398 PNPITSFGFSHFPSYIMSEIAVLGFTAPTSIQCQSWPIALKGRDMIGLAETGSGKTLAFL 457
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
LP + + P + G P VLVL PTRELA Q+ + D +G + + +CC+YGG
Sbjct: 458 LPAIVHINAQPYLET-----GDGPIVLVLTPTRELAMQIQNECDKFGSSSKIKNCCIYGG 512
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
P + Q L+ G+++V+ TPGR+ D +ERG +L + + VLDEAD ML MGF + +
Sbjct: 513 VPKYQQAQALRSGVEIVVATPGRLIDFLERGGTNLRRVTYLVLDEADRMLDMGFEDQIRK 572
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
ILG++ QTL+FSAT P V+ ++ FL + +G+ ++ A+ V + C
Sbjct: 573 ILGQIRPDK--QTLMFSATWPKSVQSLAADFLVDPIQV--KIGSAELSANHKVTQHIEIC 628
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREV 400
+ + ++ G + IIF ETK LA + A A+HGD Q +R+
Sbjct: 629 EKMDKQTKLFQYLKSIEPGAKCIIFLETKSGVGMLARNMSYAGFKCEAIHGDKTQGERDF 688
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE-AAE 459
L+ F+ GK L+AT+VA+RGLD+ D++ +I + P +E+YIHR GRTGRAG A
Sbjct: 689 ALSQFKDGKIQCLIATDVASRGLDVKDIKYVINYDFPNTIESYIHRIGRTGRAGATGTAY 748
Query: 460 TITQVSD 466
T+ + D
Sbjct: 749 TLFTLDD 755
>gi|337755500|ref|YP_004648011.1| Cold-shock DEAD-box protein A [Francisella sp. TX077308]
gi|336447105|gb|AEI36411.1| Cold-shock DEAD-box protein A [Francisella sp. TX077308]
Length = 572
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/334 (41%), Positives = 194/334 (58%), Gaps = 19/334 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP++ ++ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNM--------DMESRDRA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + + L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNIPNLDVTCIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV +L V D + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSD--ECQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIQEYLRNPCK---IQVKAKTKTANTVTQKFMVIKGFRKIDALDRLLEVEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
+D+ + +I + P D + Y+HR GRTGRAG E
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGRE 345
>gi|119357571|ref|YP_912215.1| DEAD/DEAH box helicase [Chlorobium phaeobacteroides DSM 266]
gi|119354920|gb|ABL65791.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeobacteroides DSM
266]
Length = 589
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 202/352 (57%), Gaps = 22/352 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
PL + L+ G E+ PIQA T ++L+G DL+G+A+TG GKT AF LPIL ++T
Sbjct: 19 PLMKALEEVGYENPTPIQAQTIPLLLEGRDLLGQAQTGTGKTAAFALPILSNITIA---- 74
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
R P LVL PTRELA QV E F Y + G +YGG Y Q LK+G
Sbjct: 75 ------RREPQALVLAPTRELAIQVAEAFHRYAEYLKGFHVLPIYGGQDYGIQLRMLKQG 128
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGR+ DH+ RG+++L L+ VLDEADEMLRMGF++DVE IL + +V
Sbjct: 129 VHVVVGTPGRVMDHMRRGSLNLDGLQCLVLDEADEMLRMGFIDDVEWILDQTPKGRQVA- 187
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSATLP ++ I+ K+L + ++ K +R S + V+ I+
Sbjct: 188 -LFSATLPVPIRRIAQKYLNNPA---EITIQNKTTTVEAIRQRYWIVGGSHKLDVLTRIL 243
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G +IF TK +LA+ L A AL+GD+ Q+ RE T+ +SG +
Sbjct: 244 EVEPFDG-ILIFVRTKTMTLELAEKLQARGYDASALNGDMAQNMRERTVEQLKSGALNIV 302
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS 465
+AT+VAARGLD++ + +I + P D E+Y+HR GRTGRAG + E I VS
Sbjct: 303 IATDVAARGLDVDRISHVINYDIPSDTESYVHRIGRTGRAG-RSGEAILFVS 353
>gi|315443280|ref|YP_004076159.1| DNA/RNA helicase [Mycobacterium gilvum Spyr1]
gi|315261583|gb|ADT98324.1| DNA/RNA helicase, superfamily II [Mycobacterium gilvum Spyr1]
Length = 561
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 192/331 (58%), Gaps = 20/331 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L+GSD+VG A+TG GKT AF +PIL SK R
Sbjct: 32 GYESPSPIQAATIPAMLEGSDVVGLAQTGTGKTAAFAIPIL----------SKIDTESRN 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
LVL PTRELA QV E F YG + + +YGG+ Y Q LK+G VV+GTPGR
Sbjct: 82 TQALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAGLKRGAQVVVGTPGR 141
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ DH+E+G++DLS L + VLDEADEML+MGF EDVE IL + +V LFSAT+P
Sbjct: 142 VIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVA--LFSATMPPA 199
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
+K I+ K+L +++ K + + N+ S + + ++ G I
Sbjct: 200 IKKITAKYLHD---PVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLET-EQGDAMI 255
Query: 368 IFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
+F TK++ ++A+ L A A++GDI Q+ RE T+ + G LVAT+VAARGL
Sbjct: 256 VFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTITQLKDGTIDILVATDVAARGL 315
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
D+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 316 DVERISHVVNFDIPHDPESYVHRIGRTGRAG 346
>gi|297571784|ref|YP_003697558.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
gi|296932131|gb|ADH92939.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
DSM 20595]
Length = 520
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 211/368 (57%), Gaps = 9/368 (2%)
Query: 92 EPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVG 151
EP A +E + + + + +S P+ + L +KGI FPIQA+T + L GSD++G
Sbjct: 20 EPAADIEAAGKDLNLEEKTFADYGVSAPIVDALAAKGISHPFPIQALTLPVALKGSDIIG 79
Query: 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211
+A+TG GKTL F +P++E + AP L ++PTRELAKQV +D
Sbjct: 80 QAKTGTGKTLGFGIPMIERCIGPSEPGFDALAHPGAPQGLAVVPTRELAKQVAQDLRDAA 139
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
+ +YGG Y Q L+KG ++++GTPGR+ D ++ ++L +++ VLDEAD
Sbjct: 140 KNRSIRIVEVYGGRAYEPQIKDLEKGAEIIVGTPGRLIDLMKHRTLNLGAVRAVVLDEAD 199
Query: 272 EMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKM 331
EML +GF+EDVE IL T+LFSAT+P V ++ +++ +++
Sbjct: 200 EMLDLGFLEDVEKILSATPPTR--HTMLFSATMPGPVIAMARRYMSHATHIRAQAHDDES 257
Query: 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR---- 387
+VR +V + + +V+ I++ G TIIFT TK +A+++A+ L AR
Sbjct: 258 TTVQSVRQVVYRAHALNKIEVLARILQARGR-GLTIIFTRTKRTAARVAEDL-AARGFAT 315
Query: 388 -ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
ALHGD+ Q RE L FR GK LVAT+VAARG+D+++V +I + P D + Y+HR
Sbjct: 316 GALHGDLGQGAREQALRAFRHGKIDVLVATDVAARGIDVDNVTHVINYQAPEDEKTYVHR 375
Query: 447 SGRTGRAG 454
GRTGRAG
Sbjct: 376 IGRTGRAG 383
>gi|226365506|ref|YP_002783289.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
gi|226243996|dbj|BAH54344.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
Length = 587
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/336 (41%), Positives = 195/336 (58%), Gaps = 21/336 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L G+D+VG A+TG GKT AF +PIL SK
Sbjct: 26 LSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPIL----------SKIDL 75
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
++P LVL PTRELA QV E F Y + GL +YGG Y Q L++G VV+
Sbjct: 76 TQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGAHVVV 135
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G +DLS L + VLDEADEML+MGF EDVE IL + +V LFSA
Sbjct: 136 GTPGRVIDHLEKGTLDLSKLAYLVLDEADEMLKMGFQEDVERILSDTPEYKQVA--LFSA 193
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ IS ++L +++ K ++N+ + + + + ++
Sbjct: 194 TMPGAIRKISKQYLHD---PVEITVKSKTSTASNISQRYVQVAHQRKLDALTRVLEVEDF 250
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G IIF TK++ LA+ L A A++GDI Q+QRE T+ +SG LVAT+V
Sbjct: 251 GA-MIIFVRTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDV 309
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 310 AARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 345
>gi|208779079|ref|ZP_03246425.1| conserved hypothetical protein [Francisella novicida FTG]
gi|254374120|ref|ZP_04989602.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
gi|151571840|gb|EDN37494.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
gi|208744879|gb|EDZ91177.1| conserved hypothetical protein [Francisella novicida FTG]
Length = 569
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/334 (42%), Positives = 195/334 (58%), Gaps = 19/334 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASR----DRA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V D + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSD--ECQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++ D L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
+D+ + +I + P D + Y+HR GRTGRAG E
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGRE 345
>gi|300781459|ref|ZP_07091313.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
gi|300533166|gb|EFK54227.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
Length = 675
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/400 (36%), Positives = 219/400 (54%), Gaps = 33/400 (8%)
Query: 60 EEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVP 119
+ EE +ET +E P +E EP E E E++ P + + P
Sbjct: 33 QTEENTETPAE--APAETSAENS---------EPNQDGENAETSETK-PEGFNGLGLPAP 80
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + +K G ES IQA T ++++G D+VG A+TG GKT AF LPIL +
Sbjct: 81 VLDAIKRVGFESPSQIQAETIPLLMEGRDVVGLAQTGTGKTAAFALPILARIDTS----- 135
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
R P L+L PTRELA QV + F + +G ++ +YGG Y Q L++G
Sbjct: 136 -----ARYPQALILAPTRELALQVSDSFQSFADHLGGISVLPIYGGQAYGIQLSGLRRGA 190
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
+++GTPGR+ DH+E+G++D+S+L+F VLDEADEML MGF EDVE IL + +V
Sbjct: 191 QIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVA-- 248
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P+ ++ IS +L ++ + K + +TN+ L + + I ++
Sbjct: 249 LFSATMPNAIRRISHDYLNDPEE---VTVKAKTRTNTNITQRYLFTAHRNKLDAITRVLE 305
Query: 359 CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
I+F TK+ ++A+ L A A++GDI Q QRE T+ R G+ LV
Sbjct: 306 VTEFDA-MIVFVRTKQETEEIAEKLRARGFSAAAINGDIAQQQRERTVDMLRDGRLDILV 364
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 365 ATDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAG 404
>gi|227548399|ref|ZP_03978448.1| superfamily II helicase, partial [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
Length = 683
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/377 (38%), Positives = 211/377 (55%), Gaps = 31/377 (8%)
Query: 92 EPEAGVEEQ-------ERGESEHP-NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMV 143
EPEAG + Q + ++E P N + + + +K G E PIQA T ++
Sbjct: 79 EPEAGDKPQADDTPKADEPKAEEPKNGFEKLDLPDSVIAAVKMVGFEQPSPIQAETIPLL 138
Query: 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203
++G D+VG A+TG GKT AF LP+L S+ R P LVL PTRELA QV
Sbjct: 139 MEGRDVVGLAQTGTGKTAAFALPVL----------SQIDPQLRHPQALVLAPTRELALQV 188
Query: 204 HEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262
+ F + +G + +YGG Y Q L++G +++GTPGR+ DH+E+G++D+S+L
Sbjct: 189 ADSFQSFADHLGKIQVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNL 248
Query: 263 KFRVLDEADEMLRMGFVEDVELILGKVEDA-NKVQTLLFSATLPSWVKHISTKFLKSDKK 321
+F VLDEADEML MGF EDVE IL ED N Q LFSAT+P+ ++ IS ++L
Sbjct: 249 RFLVLDEADEMLNMGFQEDVERIL---EDTPNTKQVALFSATMPNGIRKISKQYLND--- 302
Query: 322 TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLAD 381
++ + + +TN+ L + + I I+ I+F TK +LA+
Sbjct: 303 PAEVTVKSETRTNTNITQRYLFTAHRNKLDAITRILEVTEFEA-MIVFVRTKHETEELAE 361
Query: 382 LLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437
L A A++GDI Q QRE T+ R G+ LVAT+VAARGLD+ + + + P
Sbjct: 362 KLRARGFSAAAINGDIAQQQRERTVDQLRDGRLDILVATDVAARGLDVERISHVFNYDIP 421
Query: 438 RDVEAYIHRSGRTGRAG 454
D+E+Y+HR GRTGRAG
Sbjct: 422 NDIESYVHRIGRTGRAG 438
>gi|254369546|ref|ZP_04985557.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
subsp. holarctica FSC022]
gi|157122500|gb|EDO66635.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
subsp. holarctica FSC022]
Length = 569
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/334 (42%), Positives = 196/334 (58%), Gaps = 19/334 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASR----DRA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V + + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSE--QCQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
+D+ + +I + P D + Y+HR GRTGRAG E
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGRE 345
>gi|325963995|ref|YP_004241901.1| DNA/RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
gi|323470082|gb|ADX73767.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
Sphe3]
Length = 564
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 206/368 (55%), Gaps = 7/368 (1%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
+EPE + E+ + + F + + E L GI FPIQAMT + L G D++
Sbjct: 19 IEPEETIISDEKPHEIEEKSFADFNVRADIVESLADAGITHPFPIQAMTLPVALSGHDII 78
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
G+A+TG GKTL F +P L+ + +K AP LV++PTRELA QV D
Sbjct: 79 GQAKTGTGKTLGFGIPALQRVVGRDDAGYEKLAVPGAPQALVIVPTRELAVQVANDLQTA 138
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+YGG Y Q LK G++VV+GTPGR+ D ++ ++ L ++K +LDEA
Sbjct: 139 SRKRNARIATIYGGRAYEPQVEALKNGVEVVVGTPGRLIDLYKQKHLSLKNVKVVILDEA 198
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF+ DVE ++ QTLLFSAT+P V ++ +++ +++
Sbjct: 199 DEMLDLGFLPDVETLIAATPAVR--QTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDE 256
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GA 386
++R ++ S + +V+ I++ GRTIIFT+TK +A+++A+ L A
Sbjct: 257 GLTKRDIRQLIYRAHSMDKIEVVARILQAKGR-GRTIIFTKTKRTAAKVAEELVDRGFAA 315
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A+HGD+ Q RE L FR+ K LVAT+VAARG+D++DV +I + D + Y+HR
Sbjct: 316 AAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHR 375
Query: 447 SGRTGRAG 454
GRTGRAG
Sbjct: 376 VGRTGRAG 383
>gi|187931511|ref|YP_001891495.1| DEAD/DEAH box helicase [Francisella tularensis subsp. mediasiatica
FSC147]
gi|187712420|gb|ACD30717.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
subsp. mediasiatica FSC147]
Length = 569
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/334 (42%), Positives = 196/334 (58%), Gaps = 19/334 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASR----DRA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V + + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSE--QCQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
+D+ + +I + P D + Y+HR GRTGRAG E
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGRE 345
>gi|384251941|gb|EIE25418.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 589
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/329 (42%), Positives = 197/329 (59%), Gaps = 17/329 (5%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY--GRAPSVL 191
PIQA + ++ GSDLVG A TG GKTLAF LP L+ + A K G G+ PS+L
Sbjct: 196 PIQAQCWPIIQSGSDLVGIAATGSGKTLAFGLPGLKHIL-----AQKAAGVSTGKGPSML 250
Query: 192 VLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDH 251
VL PTRELA+Q+ + G + GL + C YGG P Q L++G+DVV+ TPGR++D
Sbjct: 251 VLAPTRELAQQIAAVLEEAGQSAGLRTLCAYGGVPKPPQTAALRQGVDVVVATPGRLEDL 310
Query: 252 IERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHI 311
I G LS + + VLDEAD ML +GF + I G A++ QTL+FSAT P ++ +
Sbjct: 311 INDGACRLSGVTYLVLDEADRMLDLGFEPHIRAIAGATR-ADR-QTLMFSATWPPAIQKL 368
Query: 312 STKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIF 369
+++F S + +G++ + AS +VR IV +AR + + +++R Y S R ++F
Sbjct: 369 ASEFQASIARVT--IGSQDLSASHSVRQIVEVIDPAARDRRLEELLRKYHSSRKNRVLVF 426
Query: 370 TETKESA----SQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425
K+ A +QL+ RA+HGDI Q QR + F+SGK L+AT+VAARGLDI
Sbjct: 427 VLYKKEAARVEAQLSKRGWNVRAIHGDINQRQRSEAVEQFKSGKVPLLIATDVAARGLDI 486
Query: 426 NDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
DV+ +I P E Y+HR GRTGRAG
Sbjct: 487 PDVEAVINYSFPLTTEDYVHRIGRTGRAG 515
>gi|62261419|gb|AAX77988.1| unknown protein [synthetic construct]
Length = 604
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/334 (42%), Positives = 196/334 (58%), Gaps = 19/334 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 52 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASR----DRA 103
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 104 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 163
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V + + Q LLFSAT+P+
Sbjct: 164 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHV--SEQCQRLLFSATIPT 221
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 222 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 277
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 278 IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 337
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
+D+ + +I + P D + Y+HR GRTGRAG E
Sbjct: 338 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGRE 371
>gi|118497286|ref|YP_898336.1| DEAD/DEAH box helicase [Francisella novicida U112]
gi|194323589|ref|ZP_03057366.1| conserved hypothetical protein, putative [Francisella novicida FTE]
gi|118423192|gb|ABK89582.1| DEAD-box subfamily ATP-dependent helicase [Francisella novicida
U112]
gi|194322444|gb|EDX19925.1| conserved hypothetical protein, putative [Francisella tularensis
subsp. novicida FTE]
Length = 569
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/334 (42%), Positives = 195/334 (58%), Gaps = 19/334 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASR----DRA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V D + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSD--ECQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++ D L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
+D+ + +I + P D + Y+HR GRTGRAG E
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGRE 345
>gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 718
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 196/338 (57%), Gaps = 21/338 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E +K G E+ PIQA T +LDG D+VG A+TG GKT AF LPI+ +
Sbjct: 123 EAVKKVGFETPSPIQARTIPALLDGRDVVGLAQTGTGKTAAFALPIIARIDKS------- 175
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDV 240
R+P LVL PTRELA QV + F + VG + +YGG Y Q L++G +
Sbjct: 176 ---NRSPQALVLAPTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGLRRGAHI 232
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH+++G++D+S L + VLDEADEML MGF EDVE IL D K Q LF
Sbjct: 233 IVGTPGRVIDHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPD--KKQVALF 290
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P+ ++ +S ++L ++ + + +TN+ L + + + I+
Sbjct: 291 SATMPNAIRRLSQQYLDD---PYEVTVKAETRTNTNISQRYLNVAHRNKLDALTRILEV- 346
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+ IIF TK +LA+ L A+A++GDI Q QRE T+ R G+ LVAT
Sbjct: 347 TEFEAMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVAT 406
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLD++ + ++ + P D E+YIHR GRTGRAG
Sbjct: 407 DVAARGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAG 444
>gi|227502907|ref|ZP_03932956.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
gi|227076329|gb|EEI14292.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
Length = 452
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 151/407 (37%), Positives = 224/407 (55%), Gaps = 21/407 (5%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P + ++ + + L +GI F IQ +T + L+G DL+G+ARTG GKT F +P+
Sbjct: 8 PPTFAELGVAAEICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPL 67
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
L+ + + A P L+++PTRELA+QV D + + +YGG PY
Sbjct: 68 LDRVFDDADIAPPDG----TPRALIVVPTRELAQQVTADLQDAAAHLPVRLAAIYGGRPY 123
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q L++G+DVVIGTPGR+ D ERG++ L + VLDEADEML +GF+ +E IL
Sbjct: 124 EEQIKLLQRGVDVVIGTPGRLLDLHERGDLVLRHVAIVVLDEADEMLDLGFLPSIEAILE 183
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCS 345
+ D N QT+LFSAT+P + ++S +F+ K + + + T+ R +
Sbjct: 184 AL-DGNAHQTMLFSATMPGAILNLSRQFM---HKPVHIRAESEADEVTHETTRKVTFQAH 239
Query: 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVT 401
+ VI I++ GR+IIFT TK SA+QLAD L A+HGD+ Q RE +
Sbjct: 240 RMDKVAVIAHILQAQGR-GRSIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKS 298
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETI 461
L FRSG+ LVAT++AARG+D++DV +I + P D +IHR GRTGRAG +
Sbjct: 299 LQAFRSGEVDILVATDIAARGIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAG-HTGTAV 357
Query: 462 TQVSDSVIPAFKSAAEELLNNSG-----LSAAELLAKALAKAVGYTE 503
T V + ++ +EL ++ S + LA+AL+ G E
Sbjct: 358 TLVGYDELAKWRVINDELGLDTATPPQWFSTSPELAQALSIPAGVQE 404
>gi|148242659|ref|YP_001227816.1| superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
gi|147850969|emb|CAK28463.1| Superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
Length = 560
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/341 (41%), Positives = 202/341 (59%), Gaps = 23/341 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L E L G E PIQA ++ G DL+G+A+TG GKT AF LP+L +
Sbjct: 26 LLEALTKCGYEQPSPIQAAAIPELMLGRDLLGQAQTGTGKTAAFALPLL----------A 75
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGI 238
+ R P VLVL PTRELA QV E F Y GL LYGG+ + Q KL++G+
Sbjct: 76 RINLEARHPQVLVLAPTRELAIQVSEAFQRYASCTPGLHVLPLYGGSDFRDQIHKLRRGV 135
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DH+ +G +++S L+ VLDEADEMLRMGF++DV+ +L ++ ++ Q +
Sbjct: 136 HVVVGTPGRVMDHMRQGTLNVSQLETLVLDEADEMLRMGFIDDVKWVLEQL--PSERQVV 193
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS-TNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P +K IS + L++ + I + +K AS RHI+LP + + ++
Sbjct: 194 LFSATMPPEIKRISQQHLQNPAEVI--IRTQKADASRIRQRHILLPHQQKLSALL--RVL 249
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ GG IIF TK +A+ L L+GD+ QS RE T+ + G+ L
Sbjct: 250 EAHGPGG-VIIFARTKAVTVTVAEALEAEGIACSVLNGDVPQSLRERTIERLKQGRIDVL 308
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARGLD++ + L++ + P D EAY+HR GRTGRAG
Sbjct: 309 VATDVAARGLDVDRIGLVVNYDAPFDSEAYVHRIGRTGRAG 349
>gi|392417671|ref|YP_006454276.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
gi|390617447|gb|AFM18597.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
Length = 563
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 197/345 (57%), Gaps = 20/345 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+I + + ++ G ES PIQA T +L GSD+VG A+TG GKT AF +PIL
Sbjct: 18 LQIHPSVLQAVRDVGYESPSPIQAATIPAMLAGSDVVGLAQTGTGKTAAFAIPIL----- 72
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
SK R LVL PTRELA QV E F YG + + +YGG+ Y Q
Sbjct: 73 -----SKIDTSSRTTQALVLAPTRELALQVAEAFSRYGAHLQVNVLPVYGGSSYGPQLAG 127
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
LK+G VV+GTPGR+ DH+E+G +D+S L + VLDEADEML+MGF EDVE IL +
Sbjct: 128 LKRGAQVVVGTPGRVIDHLEKGTLDVSHLDYMVLDEADEMLQMGFAEDVERILADTPEYK 187
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
+V LFSAT+P ++ I+ K+L +++ K + + N+ + S + +
Sbjct: 188 QVA--LFSATMPPGIRKITAKYLHD---PVEVTVKSKSQTAENITQRYIQVSHQRKMDAL 242
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
++ G I+F TK++ ++A+ L A A++GDI Q+ RE T+ + G
Sbjct: 243 TRLLEV-EQGDAMIVFVRTKQATEEVAEKLKARGFAAAAINGDIPQAVRERTINQLKDGS 301
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 302 IDILVATDVAARGLDVERISHVVNYDIPHDPESYVHRIGRTGRAG 346
>gi|333983621|ref|YP_004512831.1| DEAD/DEAH box helicase [Methylomonas methanica MC09]
gi|333807662|gb|AEG00332.1| DEAD/DEAH box helicase domain protein [Methylomonas methanica MC09]
Length = 580
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 142/358 (39%), Positives = 205/358 (57%), Gaps = 24/358 (6%)
Query: 105 SEHPNAVSRFR---ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
S+ P A F+ +S P+ + L++ G E+ PIQA V+ G D++G+A+TG GKT
Sbjct: 2 SDTPTATPSFKDLALSEPVLKALQTIGYETPSPIQAQIIPFVMAGRDVLGQAQTGTGKTA 61
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCC 220
AF +PIL T+ K + P LVL PTRELA QV E F Y + G
Sbjct: 62 AFAMPIL-------TRIDIKQ---KDPQALVLAPTRELAIQVAEAFQSYAAHIKGFHVLP 111
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG Y Q +L +G VV+GTPGR+ DH+ RG + L LK VLDEADEMLRMGF++
Sbjct: 112 IYGGQDYSVQLRQLNRGAHVVVGTPGRVMDHMRRGTLKLDQLKTLVLDEADEMLRMGFID 171
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVE IL + QT LFSAT+P+ ++ I+ K+L + ++ V K + N+R
Sbjct: 172 DVEWILEQTPSTR--QTALFSATMPTEIRKIAQKYLSNPEQVTIKV---KTTTAANIRQR 226
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQS 396
S + + I+ + G IIF TK + ++A+ L A A++GD+ Q+
Sbjct: 227 YWFVSGLHKMDALTRILEAENFDG-MIIFVRTKTATIEVAEKLEARGFSASAINGDMSQA 285
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RE + ++GK L+AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 286 LRERAIENLKNGKLDILIATDVAARGLDVDRITHVVNYDIPYDTESYVHRIGRTGRAG 343
>gi|444432231|ref|ZP_21227390.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia soli NBRC
108243]
gi|443887060|dbj|GAC69111.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia soli NBRC
108243]
Length = 588
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 146/378 (38%), Positives = 213/378 (56%), Gaps = 25/378 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R+ + G E+ PIQA T +LDG D+VG A+TG GKT AF +PIL L G K
Sbjct: 22 VRQAITDVGYETPSPIQAATIPPLLDGRDVVGLAQTGTGKTAAFAVPILSRLDAGAKK-- 79
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
P L+L PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 80 --------PQALILAPTRELALQVSEAFGRYSSHMSDVRVLPIYGGQSYSVQLSGLRRGA 131
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH++RG +D+S L F VLDEADEML MGF EDVE IL + D+ +V
Sbjct: 132 QVIVGTPGRVIDHLDRGTLDISELGFLVLDEADEMLTMGFAEDVERILAETPDSKQVA-- 189
Query: 299 LFSATLPSWVKHISTKFLKS-DKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P + ++ K+LK+ D+ T+ K + N+ + S + + +
Sbjct: 190 LFSATMPPAIGRLAKKYLKNPDEITV----KSKTATAQNITQRYIQVSHQRKLDALTRFL 245
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G L
Sbjct: 246 EVETFDA-MIVFVRTKQATEELAEKLRARGFSAVAINGDLAQAQRERTINQLKNGAIDIL 304
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV--EAAETITQVSDSVIPA 471
VAT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG A ++ ++ A
Sbjct: 305 VATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRA 364
Query: 472 FKSAAEELLNNSGLSAAE 489
+ A + L GL +AE
Sbjct: 365 IERATRQSLTEIGLPSAE 382
>gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 718
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 196/338 (57%), Gaps = 21/338 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E +K G E+ PIQA T +LDG D+VG A+TG GKT AF LPI+ +
Sbjct: 123 EAVKKVGFETPSPIQARTIPALLDGRDVVGLAQTGTGKTAAFALPIIARIDKS------- 175
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDV 240
R+P LVL PTRELA QV + F + VG + +YGG Y Q L++G +
Sbjct: 176 ---NRSPQALVLAPTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGLRRGAHI 232
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH+++G++D+S L + VLDEADEML MGF EDVE IL D K Q LF
Sbjct: 233 IVGTPGRVIDHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPD--KKQVALF 290
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P+ ++ +S ++L ++ + + +TN+ L + + + I+
Sbjct: 291 SATMPNAIRRLSQQYLDD---PYEVTVKAETRTNTNISQRYLNVAHRNKLDALTRILEV- 346
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+ IIF TK +LA+ L A+A++GDI Q QRE T+ R G+ LVAT
Sbjct: 347 TEFEAMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVAT 406
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLD++ + ++ + P D E+YIHR GRTGRAG
Sbjct: 407 DVAARGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAG 444
>gi|84494615|ref|ZP_00993734.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
gi|84384108|gb|EAP99988.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
Length = 540
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 210/368 (57%), Gaps = 12/368 (3%)
Query: 94 EAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
EA +E ++ +E + S F I + L + GI + FPIQAMT + L G D++G+A
Sbjct: 19 EAAIEATKQATAE-VQSFSDFAIHPDIVSALAAHGITTPFPIQAMTLPVALGGHDIIGQA 77
Query: 154 RTGQGKTLAFVLPILES-LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212
+TG GKTL F +P+L + G K G+ P L + PTRELA QV D + G
Sbjct: 78 KTGTGKTLGFGIPLLNKVIARGDDKWDGFVHKGK-PQALAVAPTRELAVQVSADLERAGK 136
Query: 213 AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE 272
A G+ +YGG Y Q L KG++VV+GTPGR+ D ++G++DLS K VLDEADE
Sbjct: 137 ARGIRVLTVYGGRAYEPQIDALTKGVEVVVGTPGRLIDLAKQGHLDLSHAKTVVLDEADE 196
Query: 273 MLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMK 332
ML +GF+ DVE +L QT+LFSAT+P V ++ +++ + I + +
Sbjct: 197 MLDLGFLPDVEKLLAMTSPGR--QTMLFSATMPGAVVALARRYM-TQPTHIRAMQEGEGD 253
Query: 333 ASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR--TIIFTETKESASQLADLLP----GA 386
S V+ I + + + R + GR TI+F+ TK +A+++AD L A
Sbjct: 254 TSQTVKAITQHVYRAHAMDKVEMLARMLQANGRGLTIVFSRTKRTAAKVADDLAERGFAA 313
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A+HGD+ Q RE L FRSGK LVAT+VAARG+D+ +V +I + P D + Y+HR
Sbjct: 314 AAIHGDLGQGAREQALRAFRSGKVDVLVATDVAARGIDVENVTHVINYQCPEDEKTYVHR 373
Query: 447 SGRTGRAG 454
GRTGRAG
Sbjct: 374 IGRTGRAG 381
>gi|306835508|ref|ZP_07468523.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
49726]
gi|304568617|gb|EFM44167.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
49726]
Length = 446
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 151/408 (37%), Positives = 224/408 (54%), Gaps = 21/408 (5%)
Query: 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP 166
P + ++ + + L +GI F IQ +T + L+G DL+G+ARTG GKT F +P
Sbjct: 7 QPPTFAELGVAAEICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVP 66
Query: 167 ILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226
+L+ + + A P L+++PTRELA+QV D + + +YGG P
Sbjct: 67 LLDRVFDDADIAPLDG----TPRALIVVPTRELAQQVTADLQDAAAHLPVRLASIYGGRP 122
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
Y Q L++G+DVVIGTPGR+ D ERG++ L + VLDEADEML +GF+ +E IL
Sbjct: 123 YEEQIKLLQRGVDVVIGTPGRLLDLHERGDLVLRHVAIVVLDEADEMLDLGFLPSIEAIL 182
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPC 344
+ D N QT+LFSAT+P + ++S +F+ K + + + T+ R +
Sbjct: 183 -EALDGNAHQTMLFSATMPGAILNLSRQFM---NKPVHIRAESEADEVTHETTRKVTFQA 238
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREV 400
+ VI I++ GR+IIFT TK SA+QLAD L A+HGD+ Q RE
Sbjct: 239 HRMDKVPVIAHILQAQGR-GRSIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREK 297
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAET 460
+L FRSG+ LVAT++AARG+D++DV +I + P D +IHR GRTGRAG
Sbjct: 298 SLQAFRSGEVDILVATDIAARGIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAG-HTGTA 356
Query: 461 ITQVSDSVIPAFKSAAEELLNNSG-----LSAAELLAKALAKAVGYTE 503
+T V + ++ +EL ++ S + LA+AL+ G E
Sbjct: 357 VTLVGYDELAKWRVINDELGLDTATPPQWFSTSPELAQALSIPAGVQE 404
>gi|134301686|ref|YP_001121654.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421751456|ref|ZP_16188502.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis AS_713]
gi|421753307|ref|ZP_16190305.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 831]
gi|421757037|ref|ZP_16193925.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 80700103]
gi|421758898|ref|ZP_16195737.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 70102010]
gi|424674217|ref|ZP_18111140.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 70001275]
gi|134049463|gb|ABO46534.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409087570|gb|EKM87662.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 831]
gi|409087605|gb|EKM87695.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis AS_713]
gi|409091594|gb|EKM91587.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 70102010]
gi|409092950|gb|EKM92911.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 80700103]
gi|417435154|gb|EKT90074.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 70001275]
Length = 569
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/334 (42%), Positives = 196/334 (58%), Gaps = 19/334 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASR----DRA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V + + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQS--QRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
+D+ + +I + P D + Y+HR GRTGRAG E
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGRE 345
>gi|407695316|ref|YP_006820104.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
gi|407252654|gb|AFT69761.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
Length = 559
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 153/390 (39%), Positives = 225/390 (57%), Gaps = 24/390 (6%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ PL + + G E+ PIQ + ++LDG DL+G+A+TG GKT AF LP+L + P
Sbjct: 13 LPAPLLDAIGKLGFETPSPIQERSIPVLLDGDDLLGQAQTGTGKTAAFGLPLLARID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
+ R P +LV+ PTRELA QV + + + + G+ +YGG+ Y Q L
Sbjct: 71 EQ--------RCPQLLVIAPTRELALQVADAMETFARQLRGVKVVAVYGGSEYRTQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+ G VV+GTPGRI DH++RG+++L L+ VLDEADEMLRMGF++DVE IL D
Sbjct: 123 RDGAQVVVGTPGRIMDHMQRGSLNLDRLQALVLDEADEMLRMGFIDDVEWILEHTPDER- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P+ ++ ++ + LKS K I + + K + +R S + +
Sbjct: 182 -QLALFSATMPNVIRRVAERHLKS-PKWIRIENDTTTK--SGIRQRFWSVSGLNKLDAMC 237
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I+ + G I+F TK+S +LA+ L A AL+GDI Q+QRE T+A R G+F
Sbjct: 238 RILEGETHDG-VIVFARTKQSTLELAEQLQRRGLRAEALNGDIPQAQREKTVARLREGRF 296
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV--EAAETITQVSDSV 468
L+AT+V ARGLD+ + +I + P D EAY+HR GRTGRAG EA ++ +
Sbjct: 297 DLLIATDVVARGLDVPRISHVINYDMPADTEAYVHRIGRTGRAGRNGEAILFVSHRERGM 356
Query: 469 IPAFKSAAEELLNNSGLSAAELL-AKALAK 497
+ A + A + L + L + + L +K LAK
Sbjct: 357 LRAIERATGQSLESMDLPSVDALNSKRLAK 386
>gi|302524385|ref|ZP_07276727.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
gi|302433280|gb|EFL05096.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
Length = 522
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 145/337 (43%), Positives = 196/337 (58%), Gaps = 21/337 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQA+T + + G DL+G+ARTG GKTL F +P+L + + G
Sbjct: 9 LAEAGIEHTFAIQALTLPLAMAGDDLIGQARTGMGKTLGFGVPLLHRV--------QVPG 60
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P VLV++PTREL QV D G +G+ + +YGG PY Q L+KG+DVVIG
Sbjct: 61 DG-TPQVLVVVPTRELCIQVANDLKGAGKHLGIRTLAIYGGRPYEPQIEALRKGVDVVIG 119
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ ++ L ++ VLDEADEML +GF+ D+E IL V D QT+LFSAT
Sbjct: 120 TPGRLLDLAEQQHLVLGKIRGLVLDEADEMLDLGFLPDIERILRMVPDER--QTMLFSAT 177
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL I N+ V S ++++ I R +
Sbjct: 178 MPGPIITLARTFLNQPTH-IRAEENDAGAIHERTAQFVYRAHSMDKTEL---IARALQAE 233
Query: 364 GR--TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
GR T+IF+ TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+
Sbjct: 234 GRGLTMIFSRTKRTAQKIADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATD 293
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAARG+DI+DV +I + P D + Y+HR GRTGRAG
Sbjct: 294 VAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAG 330
>gi|25027815|ref|NP_737869.1| cold shock DEAD-box protein A [Corynebacterium efficiens YS-314]
gi|259506205|ref|ZP_05749107.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
gi|23493098|dbj|BAC18069.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
YS-314]
gi|259166182|gb|EEW50736.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
Length = 736
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/338 (39%), Positives = 199/338 (58%), Gaps = 21/338 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ ++ G E+ PIQA T +++DG D+VG A+TG GKT AF LP+L S+
Sbjct: 118 DAVRKVGFETPSPIQAQTIPVLMDGHDVVGLAQTGTGKTAAFALPVL----------SRI 167
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDV 240
R+P LVL PTRELA QV + F + +G L +YGG Y Q L++G +
Sbjct: 168 DKSVRSPQALVLAPTRELALQVADSFQSFADHLGGLNVLPIYGGQAYGIQLSGLRRGAHI 227
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGRI DH+E+G++D+S L+F VLDEADEML MGF EDVE IL D +V LF
Sbjct: 228 VVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILADTPDDKQVA--LF 285
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P+ ++ +S ++L + ++ + + + +TN+ L + + + I+
Sbjct: 286 SATMPNGIRRLSKQYLNNPQE---ISVKSETRTATNITQRFLSVAHRNKMDALTRILEVT 342
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT
Sbjct: 343 EFEA-MIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVAT 401
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 402 DVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAG 439
>gi|383313717|ref|YP_005374572.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
P54B96]
gi|380869218|gb|AFF21692.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
P54B96]
Length = 442
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 217/381 (56%), Gaps = 17/381 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S H + ++ + + L +GI F IQ +T + LDG D++GRARTG GKTL F
Sbjct: 4 STHKPTFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGRARTGMGKTLGFG 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P+L+ + + A+ P LV++PTRELA+QV ED + + +YGG
Sbjct: 64 VPLLDRVFD----AADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L G+DVV+GTPGR+ D ++GN+ L + VLDEADEML +GF D+E
Sbjct: 120 RPYEEQIQVLTAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEK 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVL 342
+LG ++ ++ QTLLFSAT+P V ++ F+ + I + E + T+ + +V
Sbjct: 180 LLGALK--HQHQTLLFSATMPGPVLTLARTFM---SRPIHIRAEEVNASHTHASIEQVVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
++ + ++ G+TIIFT TK +A++LA+ L G +HGD+ Q+ R
Sbjct: 235 QAHRMDKTAITARALQAKER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458
E++L FR+G+ LVAT+VAARGLDI+DV +I + P Y+HR GRTGRAG
Sbjct: 294 ELSLGMFRNGRVDILVATDVAARGLDIDDVTHVINYQTPDAPMTYVHRIGRTGRAG-HTG 352
Query: 459 ETITQVSDSVIPAFKSAAEEL 479
IT V + +K ++EL
Sbjct: 353 TAITLVGYDELIKWKLISDEL 373
>gi|189499774|ref|YP_001959244.1| DEAD/DEAH box helicase [Chlorobium phaeobacteroides BS1]
gi|189495215|gb|ACE03763.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
BS1]
Length = 591
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 151/398 (37%), Positives = 219/398 (55%), Gaps = 27/398 (6%)
Query: 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
GE+ +S + + L+ G E+ P+Q T ++L GSD++G+A+TG GKT A
Sbjct: 6 GETVESTGFKDLGLSGQVLDALEKVGYETPTPVQLQTIPIILKGSDVLGQAQTGTGKTAA 65
Query: 163 FVLPILES--LTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSC 219
F LP+L + L+N +P VLVL PTRELA QV E F Y +
Sbjct: 66 FALPLLSTIDLSNA------------SPQVLVLTPTRELALQVAEAFQRYAACMEDFHVL 113
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
+YGG Y Q +L++G+ VV+GTPGR+ DHI R ++L LK VLDEADEMLRMGFV
Sbjct: 114 PIYGGQDYSGQLRRLRRGVHVVVGTPGRVMDHIRRQTLNLDGLKTLVLDEADEMLRMGFV 173
Query: 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339
+DVE IL K +V LFSAT+PS ++ I+ K+L+ D + + ST R
Sbjct: 174 DDVEWILEKTPATRQVA--LFSATMPSEIRRITRKYLR-DFTEVAIKSKSSTVESTTQR- 229
Query: 340 IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL----PGARALHGDIQQ 395
LP S + + I+ G IIF TK +L++ L + AL+GD+ Q
Sbjct: 230 -FLPVSGHHKLDALTRILEIEHYDG-VIIFVRTKTQTVELSEKLRARGYASAALNGDMMQ 287
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455
+ RE T+ F+ + L+AT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG
Sbjct: 288 NHREKTVGQFKKSVYNILIATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGR 347
Query: 456 --EAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELL 491
EA +T S++ + A + ++ L + E++
Sbjct: 348 SGEAILFVTPREMSMLRTIERAIRKRIDRMELPSTEII 385
>gi|300857956|ref|YP_003782939.1| hypothetical protein cpfrc_00538 [Corynebacterium
pseudotuberculosis FRC41]
gi|375288122|ref|YP_005122663.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
3/99-5]
gi|384504137|ref|YP_005680807.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
1002]
gi|384506229|ref|YP_005682898.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
C231]
gi|384508317|ref|YP_005684985.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
I19]
gi|385806992|ref|YP_005843389.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
267]
gi|387136078|ref|YP_005692058.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
42/02-A]
gi|300685410|gb|ADK28332.1| hypothetical protein cpfrc_00538 [Corynebacterium
pseudotuberculosis FRC41]
gi|302205685|gb|ADL10027.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
C231]
gi|302330237|gb|ADL20431.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
1002]
gi|308275920|gb|ADO25819.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
I19]
gi|348606523|gb|AEP69796.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
42/02-A]
gi|371575411|gb|AEX39014.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
3/99-5]
gi|383804385|gb|AFH51464.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
267]
Length = 441
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 217/381 (56%), Gaps = 17/381 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S H + ++ + + L +GI F IQ +T + LDG D++GRARTG GKTL F
Sbjct: 4 STHKPTFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGRARTGMGKTLGFG 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P+L+ + + A+ P LV++PTRELA+QV ED + + +YGG
Sbjct: 64 VPLLDRVFD----AADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L G+DVV+GTPGR+ D ++GN+ L + VLDEADEML +GF D+E
Sbjct: 120 RPYEEQIQVLTAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEK 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVL 342
+LG ++ ++ QTLLFSAT+P V ++ F+ + I + E + T+ + +V
Sbjct: 180 LLGALK--HQHQTLLFSATMPGPVLTLARTFM---SRPIHIRAEEVNASHTHASIEQVVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
++ + ++ G+TIIFT TK +A++LA+ L G +HGD+ Q+ R
Sbjct: 235 QAHRMDKTAITARALQAKER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458
E++L FR+G+ LVAT+VAARGLDI+DV +I + P Y+HR GRTGRAG
Sbjct: 294 ELSLGMFRNGRVDILVATDVAARGLDIDDVTHVINYQTPDAPMTYVHRIGRTGRAG-HTG 352
Query: 459 ETITQVSDSVIPAFKSAAEEL 479
IT V + +K ++EL
Sbjct: 353 TAITLVGYDELIKWKLISDEL 373
>gi|359778425|ref|ZP_09281694.1| putative ATP-dependent RNA helicase [Arthrobacter globiformis NBRC
12137]
gi|359304342|dbj|GAB15523.1| putative ATP-dependent RNA helicase [Arthrobacter globiformis NBRC
12137]
Length = 559
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 209/368 (56%), Gaps = 7/368 (1%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
+EPE + E+ + + F + + E L GI FPIQAMT + L G D++
Sbjct: 19 IEPEETIISDEKPHEIAEKSFADFDVRADIVESLADAGITHPFPIQAMTLPVALSGHDII 78
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
G+A+TG GKTL F +P+L+ + K AP +V++PTRELA QV D
Sbjct: 79 GQAKTGTGKTLGFGIPVLQRVVGRDDAGFDKLPSPGAPQAMVIVPTRELAVQVANDLQTA 138
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+ +YGG Y Q L+KG++VV+GTPGR+ D ++ ++ L ++K VLDEA
Sbjct: 139 SRKRNVRIATIYGGRAYEPQIDALQKGVEVVVGTPGRLIDLYKQKHLVLKNVKIVVLDEA 198
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF+ DVE ++ QTLLFSAT+P V ++ +++ +++
Sbjct: 199 DEMLDLGFLPDVETLIAGTPAVR--QTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDE 256
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GA 386
++R ++ S +++V+ I++ GRTIIFT+TK +A+++A+ L A
Sbjct: 257 GLTKRDIRQLIYRAHSMDKTEVVSRILQARGR-GRTIIFTKTKRTAAKVAEELVDRGFAA 315
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A+HGD+ Q RE L FR+ K LVAT+VAARG+D++DV +I + D + Y+HR
Sbjct: 316 AAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHR 375
Query: 447 SGRTGRAG 454
GRTGRAG
Sbjct: 376 VGRTGRAG 383
>gi|385679095|ref|ZP_10053023.1| ATP-dependent RNA helicase [Amycolatopsis sp. ATCC 39116]
Length = 538
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/335 (41%), Positives = 192/335 (57%), Gaps = 17/335 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQA+T + L G DL+G+ARTG GKTL F +P+L+ + + G
Sbjct: 44 LAEAGIEHTFAIQALTLPLALAGDDLIGQARTGMGKTLGFGVPLLQRVVS--------PG 95
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QV D G + + + +YGG PY Q L+KG+DVV+G
Sbjct: 96 DG-TPQALVVVPTRELCLQVTRDLTDAGKHLNVRTLAIYGGRPYEQQISALRKGVDVVVG 154
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ + L ++ VLDEADEML +GF+ D+E ILG V D + QT+LFSAT
Sbjct: 155 TPGRLLDLAEQKALVLGKVRALVLDEADEMLDLGFLPDIERILGMVPD--QRQTMLFSAT 212
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL + N+ S + ++I +++
Sbjct: 213 MPDPIIKLARTFLNRPTH-VRAEENDSSAVHERTTQFAYRAHSLDKPELIARVLQAKDR- 270
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 271 GLTMIFTRTKRTAQKVADDLAERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVA 330
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
ARG+D+ DV +I + P D Y+HR GRTGRAG
Sbjct: 331 ARGIDVTDVTHVINYQTPEDESTYVHRIGRTGRAG 365
>gi|312138933|ref|YP_004006269.1| dead/deah box helicase [Rhodococcus equi 103S]
gi|311888272|emb|CBH47584.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
Length = 610
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/361 (39%), Positives = 207/361 (57%), Gaps = 21/361 (5%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
E++ ++P + +I + + L G ES PIQA T +L+G D+VG A+TG G
Sbjct: 5 ERDPQTDDNPITFADLQIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTG 64
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLT 217
KT AF +PIL L +K P L+L PTRELA QV E F Y + GL
Sbjct: 65 KTAAFAIPILSRL-----DVDRKV-----PQALILAPTRELALQVAEAFGKYSAHIPGLQ 114
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+YGG Y Q L++G +++GTPGR+ DH+E+G +DLS+L++ VLDEADEML+MG
Sbjct: 115 VLPIYGGQAYGVQLSGLRRGAQIIVGTPGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMG 174
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F +DVE IL + +V LFSAT+P ++ IS ++L +++ K ++N+
Sbjct: 175 FQDDVERILADTPEYKQVA--LFSATMPPAIRKISKQYLHD---PVEITVKAKTATASNI 229
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDI 393
+ + + + I+ S IIF TK++ LA+ L A A++GDI
Sbjct: 230 TQRWVQVAHQRKLDALTRILEVESFEA-MIIFVRTKQATEDLAERLRARGFSAAAINGDI 288
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q+QRE T+ +SG LVAT+VAARGLD++ + ++ + P D E+Y+HR GRTGRA
Sbjct: 289 VQAQRERTIGQLKSGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRA 348
Query: 454 G 454
G
Sbjct: 349 G 349
>gi|384510410|ref|YP_005689988.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
PAT10]
gi|341824349|gb|AEK91870.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
PAT10]
Length = 441
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 217/381 (56%), Gaps = 17/381 (4%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S H + ++ + + L +GI F IQ +T + LDG D++GRARTG GKTL F
Sbjct: 4 STHKPTFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGRARTGMGKTLGFG 63
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P+L+ + + A+ P LV++PTRELA+QV ED + + +YGG
Sbjct: 64 VPLLDRVFD----AADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
PY Q L G+DVV+GTPGR+ D ++GN+ L + VLDEADEML +GF D+E
Sbjct: 120 RPYEEQIQVLTAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEK 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVL 342
+LG ++ ++ QTLLFSAT+P V ++ F+ + I + E + T+ + +V
Sbjct: 180 LLGALK--HQHQTLLFSATMPGPVLTLARTFM---SRPIHIRAEEVNASHTHASIEQVVF 234
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
++ + ++ G+TIIFT TK +A++LA+ L G +HGD+ Q+ R
Sbjct: 235 QAHRMDKTAITARALQAKER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAAR 293
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458
E++L FR+G+ LVAT+VAARGLDI+DV +I + P Y+HR GRTGRAG
Sbjct: 294 ELSLGMFRNGRVDILVATDVAARGLDIDDVTHVINYQTPDAPMTYVHRIGRTGRAG-HTG 352
Query: 459 ETITQVSDSVIPAFKSAAEEL 479
IT V + +K ++EL
Sbjct: 353 TAITLVGYDELIKWKLISDEL 373
>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
Length = 538
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 204/350 (58%), Gaps = 21/350 (6%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
+ ++S ++ ++ G E PIQA +++G D++G+A+TG GKT +F +PILE++
Sbjct: 7 NELQVSEEIKRAIEDLGYEEPSPIQAQAIPCMIEGHDVIGQAQTGTGKTASFSIPILENI 66
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQ 230
R +VL PTRELA QV E+ + G+ + +YGG P Q
Sbjct: 67 DRD----------NRKLQAIVLCPTRELAIQVSEEVRKLAKYMQGIRTLPIYGGQPIDRQ 116
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
LK G+ V IGTPGR+ DHI R + L +K VLDEADEML MGF ED+E IL V
Sbjct: 117 IKALKGGVQVAIGTPGRVIDHINRKTLKLDQVKMVVLDEADEMLDMGFREDIETILSNVP 176
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+ QT LFSAT+P + ++ K+ K D I +V K +N++ + S +
Sbjct: 177 EER--QTALFSATMPKAILELTKKYQK-DPVHIKVV--RKTLTVSNIKQYYIETRKSNKL 231
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFR 406
+V+ ++ Y+ T++FT TK+ A +L L GA +LHGD++Q QR++ + FR
Sbjct: 232 EVLTRLLDVYNPK-LTVVFTNTKKGADELVSSLQARGYGADSLHGDLKQVQRDIVMDKFR 290
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
+G LVAT+VAARG+DI+DV+ +I E P+D E Y+HR GRTGRAG E
Sbjct: 291 AGTIDILVATDVAARGIDIDDVECVINYELPQDDEYYVHRIGRTGRAGRE 340
>gi|110598397|ref|ZP_01386670.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like
[Chlorobium ferrooxidans DSM 13031]
gi|110340006|gb|EAT58508.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like
[Chlorobium ferrooxidans DSM 13031]
Length = 598
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 140/352 (39%), Positives = 203/352 (57%), Gaps = 21/352 (5%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P +++ PL + L+ G E+ PIQA T ++L+G D++G+A+TG GKT AF LP+
Sbjct: 8 PKDFRSLQLAEPLMQALEEVGYENPTPIQAETIPLLLEGRDVLGQAQTGTGKTAAFALPV 67
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAP 226
L ++ + P LVL PTRELA QV E F Y + G +YGG
Sbjct: 68 LSNIRLALAE----------PQALVLAPTRELAIQVAEAFQRYAVHLKGFHVVPIYGGQD 117
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
Y Q LK+G+ VV+GTPGR+ DH+ RG+++L SL+ VLDEADEMLRMGF++DVE IL
Sbjct: 118 YGIQLRMLKRGVHVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWIL 177
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346
+ +V LFSAT+PS ++ I+ K+L + + + K +R
Sbjct: 178 DQTPKDRQVA--LFSATMPSAIRRIAQKYLNNPAQ---VTIQTKTTTVETIRQRYWIVGG 232
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402
S + ++ I+ G +IF TK +LA+ L GA AL+GD+ Q+QRE T+
Sbjct: 233 SHKLDILTRILEVEPFDG-ILIFVRTKTMTIELAEKLQARGYGAAALNGDMAQNQRERTV 291
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
++G ++AT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG
Sbjct: 292 DQLKNGALSIVIATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAG 343
>gi|271969585|ref|YP_003343781.1| hypothetical protein [Streptosporangium roseum DSM 43021]
gi|270512760|gb|ACZ91038.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
Length = 697
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 202/337 (59%), Gaps = 14/337 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L+++GI + FPIQ M + L+G D++G+ARTG GKT AF + +L+ + P K KK
Sbjct: 52 DALETEGIITPFPIQEMALPLALNGQDIIGQARTGTGKTYAFGVAMLQRV-GKPRKNRKK 110
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
P LV++PTRELA QV ED G +G +YGG Y Q LK+G+DV+
Sbjct: 111 ------PRGLVVVPTRELAVQVTEDLVTAAGKLGSRILTVYGGRAYEPQVEALKQGVDVI 164
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ D +++ ++DL + VLDEAD ML +GF+ D+E I+ + + K QT+LFS
Sbjct: 165 VGTPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIERIIKLIPE--KRQTMLFS 222
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
ATLP + +S ++L + + +A+ V + +++ +++C
Sbjct: 223 ATLPGEIVALSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRMDKIEIVGRLLQC-D 281
Query: 362 SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
G T+IF ETK + + + L A A+HGD+ Q QRE L FR+GK LVAT+
Sbjct: 282 GRGLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKIDVLVATD 341
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAARG+D++DV ++ + P+D +AY+HR GRTGRAG
Sbjct: 342 VAARGIDVDDVTHVVNYDCPQDEKAYVHRIGRTGRAG 378
>gi|389795816|ref|ZP_10198925.1| DNA/RNA helicase [Rhodanobacter fulvus Jip2]
gi|388430147|gb|EIL87341.1| DNA/RNA helicase [Rhodanobacter fulvus Jip2]
Length = 622
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 211/376 (56%), Gaps = 25/376 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L+G D++G+A+TG GKT AF LPIL + +A K
Sbjct: 28 LADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRIN---PRAGK--- 81
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F Y + G +YGG Y Q LK+G+ VV+
Sbjct: 82 ----PQALVLAPTRELAIQVAEAFQRYAAHIPGFQVLPIYGGQSYGPQLHALKRGVHVVV 137
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+++G +DLS L+F VLDEADEMLRMGF++DVE +L +V LFSA
Sbjct: 138 GTPGRVIDHLDKGTLDLSELRFLVLDEADEMLRMGFIDDVEKVLHATPPERQVA--LFSA 195
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ + LK ++++ + N+ S + + I+
Sbjct: 196 TMPAVIRKIAQRHLKD---PVEVIIKSSTTTAANIHQRYWFVSGMHKLDALTRILEAEPF 252
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ +LA L A A++GDI Q+QRE + + GK LVAT+V
Sbjct: 253 DA-MIIFARTKQATEELAGKLQARGLAAAAINGDIAQAQRERVIQQLKDGKLDILVATDV 311
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD---SVIPAFKSA 475
AARGLD++ + ++ + P D E+Y+HR GRTGRAG + E I VS ++ A + A
Sbjct: 312 AARGLDVDRISHVLNFDIPYDTESYVHRIGRTGRAG-RSGEAILFVSPRERGMLGAIERA 370
Query: 476 AEELLNNSGLSAAELL 491
+ + L + E++
Sbjct: 371 TRQPIEQMQLPSVEVV 386
>gi|397905196|ref|ZP_10506067.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
gi|397161845|emb|CCJ33401.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
Length = 526
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 198/336 (58%), Gaps = 25/336 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E PIQA T ++L G D++G+A+TG GKT AF +P LE + SKKT
Sbjct: 23 GYEEATPIQAKTIPIILQGKDIIGQAQTGTGKTAAFGIPTLERID-----PSKKT----- 72
Query: 188 PSVLVLLPTRELAKQVHEDF---DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
L+L PTRELA QV E+ Y A+G+ +YGG Q LKKG++++IGT
Sbjct: 73 IQALILCPTRELAIQVSEELKKLSKYKKAIGILP--IYGGQSIERQIQSLKKGVNIIIGT 130
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304
PGR DHIERG + L +K +LDEADEML MGF+ED+E IL K QTLLFSAT+
Sbjct: 131 PGRCIDHIERGTLKLEDIKLFILDEADEMLNMGFIEDIEFILDKTPKDK--QTLLFSATM 188
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P + ++ K+LK+ + I +V E + I + + +++ ++ Y+
Sbjct: 189 PDPILKLTKKYLKNPEH-IKVVHKE--LTVPTIEQIYFEVKEAHKIEILSRLLDIYNP-K 244
Query: 365 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
++F TK+ ++ L A ALHGD++Q+QR+ +A FRSG LVAT+VAA
Sbjct: 245 LALVFCNTKKKVDEVVSSLQARGYLADALHGDMKQNQRDRVMAKFRSGTIDVLVATDVAA 304
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
RG+D+ DV+++ + P+D E Y+HR GRTGRAG E
Sbjct: 305 RGIDVEDVEIVFNYDVPQDEEYYVHRIGRTGRAGRE 340
>gi|415717822|ref|ZP_11467057.1| ATP-dependent RNA helicase [Gardnerella vaginalis 1500E]
gi|388060705|gb|EIK83389.1| ATP-dependent RNA helicase [Gardnerella vaginalis 1500E]
Length = 585
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 159/422 (37%), Positives = 232/422 (54%), Gaps = 33/422 (7%)
Query: 81 KEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVP--LREKLKSKGIESLFPIQAM 138
K K K + + P++ +E +E + + V+ ++ VP L E L++ G + FPIQ
Sbjct: 84 KNNKSSKNSVIIPDSAIESRE----NYSDDVTFTQLGVPDPLVEVLRADGKTTAFPIQQA 139
Query: 139 TFDMVLDGSDLVGRARTGQGKTLAFVLPILESL--------TNGPTKASKKTGYGRAPSV 190
T L G++++GR RTG GKTLAF +P++ L NG ++G AP
Sbjct: 140 TLPDSLQGANILGRGRTGSGKTLAFSIPLVARLAENFVDLINNGKNSRKNESGDTPAPRA 199
Query: 191 LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKD 250
++L PTREL Q+ + A G+ + +YGG Y Q +LKKG +V+ PGR++D
Sbjct: 200 MILAPTRELVHQIDDVIAPLAAAYGMRTVTVYGGVRYQRQVSQLKKGAQIVLACPGRLED 259
Query: 251 HIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKH 310
I +G + L + VLDEADEM MGF+ V +L +V D N Q +LFSATL V
Sbjct: 260 LIRQGALTLEKVMVSVLDEADEMADMGFLPAVTRLLEQV-DPNG-QRMLFSATLDKQVST 317
Query: 311 ISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIF 369
+ +FL + I V + + T HI SS + +V +R +SG R+I F
Sbjct: 318 LVNRFLPN--AVIHAVDDADSQVDTMTHHI-FAVSSGDKYEV----LRKLASGCKRSIFF 370
Query: 370 TETKESASQLAD--LLPGARA--LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425
T TK A +A L G A L G++ Q+QR+ LA F G LVAT+VAARG+DI
Sbjct: 371 TRTKYQAKNMAKKFLQQGIPAVDLQGNLSQNQRDRHLAVFSEGLVRVLVATDVAARGIDI 430
Query: 426 NDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNNSGL 485
+DV L++Q EPP D ++++HRSGRT RAG E + +T V+P K AA +L +G+
Sbjct: 431 SDVALVVQTEPPEDPKSFLHRSGRTARAG-EEGDVVTL----VLPNQKRAAHTMLRRAGI 485
Query: 486 SA 487
+A
Sbjct: 486 NA 487
>gi|378551112|ref|ZP_09826328.1| hypothetical protein CCH26_13526 [Citricoccus sp. CH26A]
Length = 578
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 133/345 (38%), Positives = 199/345 (57%), Gaps = 7/345 (2%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + E L KGI FPIQAMT + L G D++G+A+TG GKTL F LP+L+ +
Sbjct: 49 FNVRADMVEALAEKGITHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGLPLLQRVIG 108
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+ + AP LV+ PTRELA QV D + +YGG Y Q +
Sbjct: 109 PDEEGFDRLAAPGAPQALVVAPTRELANQVAADITAAASKRSVRIATIYGGRAYEPQIEE 168
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L++G++VV+GTPGR+ D + + +++L +K VLDEADEML +GF+ DVE +L V +
Sbjct: 169 LQRGVEVVVGTPGRLIDLMRQRHLNLKLVKIVVLDEADEMLDLGFLPDVETLLSAVPEVR 228
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QT+LFSAT+P V ++ +++ ++ ++R +V + +++
Sbjct: 229 --QTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGITKKDIRQLVYRAHHMDKDELV 286
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
++ G+TIIFT TK +A++L+D L A ++HGD+ Q RE L FR K
Sbjct: 287 ARSLQAEGR-GKTIIFTRTKRTAARLSDELEKRGFAAGSIHGDLGQGAREQALRAFRGDK 345
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG
Sbjct: 346 IDVLVATDVAARGIDVDDVTHVINFQCPEDEKTYLHRVGRTGRAG 390
>gi|325964224|ref|YP_004242130.1| DNA/RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
gi|323470311|gb|ADX73996.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
Sphe3]
Length = 710
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 142/341 (41%), Positives = 192/341 (56%), Gaps = 25/341 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-----NGPTKA 178
L+ G E PIQA T ++L+G D+VG A+TG GKT AF +P L L NGP++
Sbjct: 82 LQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSRK 141
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKG 237
++ LVL PTRELA QV E F Y + T +YGG+ Y Q L++G
Sbjct: 142 TQ---------ALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRG 192
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DHI +G++DLS L++ VLDEADEMLRMGF EDVE I + + Q
Sbjct: 193 AQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQT--PSDRQV 250
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+PS ++ +S ++L + ++ K N R L + + I+
Sbjct: 251 ALFSATMPSQIRRMSKQYLNN---PAEISVKSKTTTGANTRQRYLQVMGPHKLDAMTRIL 307
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G I F TK + LAD L A A++GDI Q QRE T+ + G+ L
Sbjct: 308 EVEEFDG-VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDIL 366
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG
Sbjct: 367 VATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAG 407
>gi|116671594|ref|YP_832527.1| DEAD/DEAH box helicase [Arthrobacter sp. FB24]
gi|116611703|gb|ABK04427.1| ATP-dependent RNA helicase CsdA [Arthrobacter sp. FB24]
Length = 747
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/341 (41%), Positives = 192/341 (56%), Gaps = 25/341 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-----NGPTKA 178
L+ G E PIQA T ++L+G D+VG A+TG GKT AF +P L L NGP++
Sbjct: 105 LQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSRK 164
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKG 237
++ LVL PTRELA QV E F Y + T +YGG+ Y Q L++G
Sbjct: 165 TQ---------ALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRG 215
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DHI +G++DLS L++ VLDEADEMLRMGF EDVE I + + Q
Sbjct: 216 AQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQT--PSDRQV 273
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+PS ++ +S ++L + ++ K N R L + + I+
Sbjct: 274 ALFSATMPSQIRRMSKQYLNN---PAEISVKSKTTTGANTRQRYLQVMGPHKLDALTRIL 330
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G I F TK + LAD L A A++GDI Q QRE T+ + G+ L
Sbjct: 331 EVEEFDG-VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDIL 389
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 390 VATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAG 430
>gi|258652378|ref|YP_003201534.1| DEAD/DEAH box helicase [Nakamurella multipartita DSM 44233]
gi|258555603|gb|ACV78545.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
44233]
Length = 586
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 198/338 (58%), Gaps = 11/338 (3%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQA+T + L GSDL+G+ARTG GKTL F +P+L+ L++ + G
Sbjct: 60 LADVGIERTFAIQALTLPIALTGSDLIGQARTGMGKTLGFGVPLLQRLSHDKAVTVDEKG 119
Query: 184 ---YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
GRAP +V++PTREL QV D G A+GL +YGG Y Q L+ G+D+
Sbjct: 120 KLPVGRAPRAVVMVPTRELCVQVTRDLHALGKALGLAVTAVYGGRAYEPQIKALQAGVDL 179
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ D G++ L +K VLDEADEML +GF+ D+E +L V QT+LF
Sbjct: 180 VVGTPGRLLDLANSGHLVLGGVKVLVLDEADEMLDLGFLPDMEKVLDLVPTVK--QTMLF 237
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P + ++ F+ E ST R V + + +++ +++
Sbjct: 238 SATMPGPILTLARTFMSRPMHIRAEAAAEGAMHSTT-RQFVYRAHALDKVEMLARVLQAR 296
Query: 361 SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G T++FT TK +A+++A+ L A A+HGD+ Q RE L FR+GK LVAT
Sbjct: 297 GR-GLTMVFTRTKRTAAKVAEDLEERGFAAAAVHGDLGQGAREQALRAFRAGKVDVLVAT 355
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARG+D++DV +I + P + + Y+HR GRTGRAG
Sbjct: 356 DVAARGIDVDDVTHVINFQCPEEEKTYVHRIGRTGRAG 393
>gi|325676644|ref|ZP_08156320.1| ATP-dependent RNA helicase DeaD, partial [Rhodococcus equi ATCC
33707]
gi|325552534|gb|EGD22220.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
Length = 453
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/361 (39%), Positives = 207/361 (57%), Gaps = 21/361 (5%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
E++ ++P + +I + + L G ES PIQA T +L+G D+VG A+TG G
Sbjct: 5 ERDPQTDDNPITFADLQIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTG 64
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLT 217
KT AF +PIL L +K P L+L PTRELA QV E F Y + GL
Sbjct: 65 KTAAFAIPILSRL-----DVDRKV-----PQALILAPTRELALQVAEAFGKYSAHIPGLQ 114
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+YGG Y Q L++G +++GTPGR+ DH+E+G +DLS+L++ VLDEADEML+MG
Sbjct: 115 VLPIYGGQAYGVQLSGLRRGAQIIVGTPGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMG 174
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F +DVE IL + +V LFSAT+P ++ IS ++L +++ K ++N+
Sbjct: 175 FQDDVERILADTPEYKQVA--LFSATMPPAIRKISKQYLHD---PVEITVKAKTATASNI 229
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDI 393
+ + + + I+ S IIF TK++ LA+ L A A++GDI
Sbjct: 230 TQRWVQVAHQRKLDALTRILEVESFEA-MIIFVRTKQATEDLAERLRARGFSAAAINGDI 288
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q+QRE T+ +SG LVAT+VAARGLD++ + ++ + P D E+Y+HR GRTGRA
Sbjct: 289 VQAQRERTIGQLKSGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRA 348
Query: 454 G 454
G
Sbjct: 349 G 349
>gi|145295298|ref|YP_001138119.1| hypothetical protein cgR_1238 [Corynebacterium glutamicum R]
gi|417970048|ref|ZP_12610983.1| hypothetical protein CgS9114_03408 [Corynebacterium glutamicum
S9114]
gi|140845218|dbj|BAF54217.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045730|gb|EGV41400.1| hypothetical protein CgS9114_03408 [Corynebacterium glutamicum
S9114]
Length = 729
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 144/363 (39%), Positives = 208/363 (57%), Gaps = 24/363 (6%)
Query: 100 QERGESEHPNAVSRFR-ISVPLR--EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTG 156
Q ES A S F + +P R + ++ G E+ PIQA T ++++G D+VG A+TG
Sbjct: 90 QPSNESSSTEAKSGFDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTG 149
Query: 157 QGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG- 215
GKT AF LPIL S+ R+P LVL PTRELA QV + F + VG
Sbjct: 150 TGKTAAFALPIL----------SRIDKSVRSPQALVLAPTRELALQVADSFQSFADHVGG 199
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L +YGG Y Q L++G +V+GTPGRI DH+E+G++D+S L+F VLDEADEML
Sbjct: 200 LNVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLN 259
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
MGF EDVE IL D +V LFSAT+P+ ++ +S ++L + ++ + + +T
Sbjct: 260 MGFQEDVERILEDTPDEKQVA--LFSATMPNGIRRLSKQYLNN---PAEITVKSETRTNT 314
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHG 391
N+ L + + + I+ I+F TK ++A+ L A A++G
Sbjct: 315 NITQRFLNVAHRNKMDALTRILEVTEFEA-MIMFVRTKHETEEVAEKLRARGFSAAAING 373
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q+QRE T+ + G+ LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTG
Sbjct: 374 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTG 433
Query: 452 RAG 454
RAG
Sbjct: 434 RAG 436
>gi|194336034|ref|YP_002017828.1| DEAD/DEAH box helicase [Pelodictyon phaeoclathratiforme BU-1]
gi|194308511|gb|ACF43211.1| DEAD/DEAH box helicase domain protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 599
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 142/357 (39%), Positives = 205/357 (57%), Gaps = 22/357 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+++ PL L G E+ PIQA T ++L+G D++G+A+TG GKT AF LPIL ++
Sbjct: 6 LQLAEPLMRALADVGYENPTPIQAQTIPLILEGRDVLGQAQTGTGKTAAFALPILSNIDL 65
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEF 232
+ P LVL PTRELA QV E F Y + G +YGG Y Q
Sbjct: 66 EHAE----------PQALVLAPTRELAIQVAEAFQRYAEHLKGFHVVPIYGGQDYGIQLR 115
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G+ +V+GTPGR+ DH+ RG+++L+SLK VLDEADEMLRMGF++DVE IL +
Sbjct: 116 MLRRGVHIVVGTPGRVMDHMRRGSLNLASLKCLVLDEADEMLRMGFIDDVEWILDQTPKG 175
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+V LFSAT+P ++ I+ K+L + ++ K +R S + +
Sbjct: 176 RQVA--LFSATMPPVIRRIAQKYLHNPA---EVTIQTKTTTVDTIRQRYWIVGGSHKIDI 230
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ I+ G +IF TK +LA+ L GA AL+GD+ Q+QRE T+ ++G
Sbjct: 231 LTRILEVEPFDG-MLIFVRTKTMTLELAEKLQARGYGAAALNGDMPQNQRERTVDQLKNG 289
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS 465
++AT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG A + I VS
Sbjct: 290 ALSIVIATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAG-RAGDAILFVS 345
>gi|167628080|ref|YP_001678580.1| DEAD/DEAH box helicase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254877152|ref|ZP_05249862.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|167598081|gb|ABZ88079.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|254843173|gb|EET21587.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 581
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 142/348 (40%), Positives = 201/348 (57%), Gaps = 25/348 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP++ ++ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNM--------DLESRDRA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F + + L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV +L V D + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSD--ECQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIQEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLEVEETDG-V 251
Query: 367 IIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++AD L G R A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVLVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIP 470
+D+ + +I + P D + Y+HR GRTGRAG E +S S++P
Sbjct: 312 IDLERISHVINYDMPNDSDTYVHRIGRTGRAGREG------ISISLVP 353
>gi|418245162|ref|ZP_12871569.1| putative helicase [Corynebacterium glutamicum ATCC 14067]
gi|354510570|gb|EHE83492.1| putative helicase [Corynebacterium glutamicum ATCC 14067]
Length = 732
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 144/363 (39%), Positives = 208/363 (57%), Gaps = 24/363 (6%)
Query: 100 QERGESEHPNAVSRFR-ISVPLR--EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTG 156
Q ES A S F + +P R + ++ G E+ PIQA T ++++G D+VG A+TG
Sbjct: 90 QPSNESSSTEAKSGFDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTG 149
Query: 157 QGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG- 215
GKT AF LPIL S+ R+P LVL PTRELA QV + F + VG
Sbjct: 150 TGKTAAFALPIL----------SRIDKSVRSPQALVLAPTRELALQVADSFQSFADHVGG 199
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L +YGG Y Q L++G +V+GTPGRI DH+E+G++D+S L+F VLDEADEML
Sbjct: 200 LNVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLN 259
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
MGF EDVE IL D +V LFSAT+P+ ++ +S ++L + ++ + + +T
Sbjct: 260 MGFQEDVERILEDTPDEKQVA--LFSATMPNGIRRLSKQYLNNPA---EITVKSETRTNT 314
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHG 391
N+ L + + + I+ I+F TK ++A+ L A A++G
Sbjct: 315 NITQRFLNVAHRNKMDALTRILEVTEFEA-MIMFVRTKHETEEVAEKLRARGFSAAAING 373
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q+QRE T+ + G+ LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTG
Sbjct: 374 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTG 433
Query: 452 RAG 454
RAG
Sbjct: 434 RAG 436
>gi|357589095|ref|ZP_09127761.1| hypothetical protein CnurS_02800 [Corynebacterium nuruki S6-4]
Length = 686
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 140/326 (42%), Positives = 196/326 (60%), Gaps = 21/326 (6%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA T +++G D+VG A+TG GKT AF LP L S+ + R P VLVL
Sbjct: 67 PIQAATIPALMEGHDVVGLAQTGTGKTAAFALPAL----------SRLDLHDRHPQVLVL 116
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA Q + F+ + G +G + +YGGAPY AQ L++G VV+GTPGRI DH+
Sbjct: 117 APTRELALQSADSFESFAGHLGNVNILPIYGGAPYGAQLSGLRRGAHVVVGTPGRIIDHL 176
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
E+G++DLS L+F VLDEADEML MGF EDVE IL E + Q LFSAT+PS ++ +S
Sbjct: 177 EKGSLDLSHLRFLVLDEADEMLNMGFQEDVERILS--ETPEERQVALFSATMPSAIRRLS 234
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTET 372
++L ++ V +E+ + + N+ L + + + I+ + I+F T
Sbjct: 235 KQYLNDAQEYT--VKSEQ-RTADNITQDYLFVTFRNKMNALTRILEV-TDFDAMILFVRT 290
Query: 373 KESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K +A+ L A A++GDI Q+QRE T+ + G LVAT+VAARGLD++ +
Sbjct: 291 KSDTEDVAEKLRAQGFKAAAINGDIAQNQRERTVDQLKDGTLDILVATDVAARGLDVDRI 350
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ + PRD E+Y+HR GRTGRAG
Sbjct: 351 THVFNYDIPRDTESYVHRIGRTGRAG 376
>gi|399155306|ref|ZP_10755373.1| Cold-shock DEAD box protein A-like protein [SAR324 cluster
bacterium SCGC AAA001-C10]
Length = 627
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 145/387 (37%), Positives = 212/387 (54%), Gaps = 23/387 (5%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F + L++ L G E+ PIQ T ++L+ D++G+A+TG GKT AF LP+L +L
Sbjct: 6 SEFELKPALQKSLDEVGYETPTPIQKQTIPLMLEKKDVLGQAQTGTGKTAAFALPLLSNL 65
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQ 230
+ P VLVL PTRELA QV E F Y + +YGG Y Q
Sbjct: 66 NL----------RQKDPQVLVLAPTRELAIQVAEAFKKYASHMKSFHVLPIYGGQEYSGQ 115
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
LK+G VV+GTPGR+ DH+ RG + L L VLDEADEMLRMGF++DVE IL +
Sbjct: 116 IRGLKRGSHVVVGTPGRVMDHMRRGTLKLDKLSTLVLDEADEMLRMGFIDDVEWILEQT- 174
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
+ Q LFSAT+P ++ I+T++LK ++++ +K + +R P S +
Sbjct: 175 -PKERQIALFSATMPHQIRRIATRYLKD---PVEIIIKDKTTTAPTIRQRFWPVSGMHKL 230
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFR 406
+ I+ +IF TK + +L+ L + L+GDI+Q+QRE ++ +
Sbjct: 231 DALTRILEAEPFEA-ILIFVRTKTATVELSAKLEARGYASTPLNGDIKQNQRERSIESLK 289
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE--AAETITQV 464
SGK LVAT+VAARGLD+ + +I + P D E Y+HR GRTGRAG + A +
Sbjct: 290 SGKLDILVATDVAARGLDVERITHVINYDIPHDTEGYVHRIGRTGRAGRQGDAILFVAPR 349
Query: 465 SDSVIPAFKSAAEELLNNSGLSAAELL 491
S++ A + A + + L + EL+
Sbjct: 350 EKSMLHAIERATNQKIEIMELPSTELI 376
>gi|375140808|ref|YP_005001457.1| DNA/RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359821429|gb|AEV74242.1| DNA/RNA helicase, superfamily II [Mycobacterium rhodesiae NBB3]
Length = 562
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 197/345 (57%), Gaps = 20/345 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+I + + +K G ES IQA T +L GSD+VG A+TG GKT AF +PIL
Sbjct: 18 LQIHPSVLQAVKEVGYESPSAIQAATIPAMLKGSDVVGLAQTGTGKTAAFAIPIL----- 72
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
SK R LVL PTRELA QV E F YG + + +YGG+ Y Q
Sbjct: 73 -----SKIDTNSRTTQALVLAPTRELALQVAEAFSRYGAHLHVNVLPVYGGSSYGPQLAG 127
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
LK+G +V+GTPGR+ DH+E+G +D+S L + VLDEADEML+MGF EDVE IL +
Sbjct: 128 LKRGAQIVVGTPGRVIDHLEKGTLDVSHLDYMVLDEADEMLQMGFAEDVERILADTPEYK 187
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
+V LFSAT+P +K I++K+L +++ K + + N+ + S + +
Sbjct: 188 QVA--LFSATMPPAIKKITSKYLHG---PVEVTVKSKTQTAENITQRYIQVSYPRKMDAL 242
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGK 409
++ G I+F TK++ ++A+ L A A++GDI Q+ RE T+ + G
Sbjct: 243 TRLLEV-EQGDAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQAVRERTINSLKDGS 301
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 302 LDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAG 346
>gi|148271949|ref|YP_001221510.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147829879|emb|CAN00803.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 403
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 149/376 (39%), Positives = 219/376 (58%), Gaps = 21/376 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G S FPIQA T VL G D++GR RTG GKT+AF P++E L ++K
Sbjct: 33 LEELGAASPFPIQAATIPDVLAGRDVLGRGRTGSGKTIAFGAPLVERLLENDGAKNRK-- 90
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
GR P L+L PTRELA Q+ +VGL + ++GG P Q L++G+D++I
Sbjct: 91 MGRKPRALILAPTRELAMQIDRTVQPIARSVGLFTTTIFGGVPQFKQVGALQRGVDILIA 150
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR++D I++G +DLS + VLDEAD M +GF+E V+ IL +V+ Q LLFSAT
Sbjct: 151 TPGRLEDLIDQGRLDLSEIVVTVLDEADHMCDLGFLEPVQRILRQVKKDG--QRLLFSAT 208
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
L V + +FL + ++ V E +AS+ + H VL ++ +I + SSG
Sbjct: 209 LDKGVATLVNEFLPN--PSVHEVAGED-QASSTIDHRVLLIEQRDKAAIIEQL----SSG 261
Query: 364 -GRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G+T+IF T+ A QLAD L A +LHGD+ Q++R L SGK LVAT+V
Sbjct: 262 EGKTLIFARTRAFAEQLADQLEDAGIPATSLHGDLNQARRTRNLQLLTSGKVRVLVATDV 321
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEE 478
AARG+ ++D+ L+IQ + P + ++Y+HR+GRTGRAG + V + A + ++
Sbjct: 322 AARGIHVDDIGLVIQADAPDEYKSYLHRAGRTGRAGKQGT-----VVTLITKARRRRMDD 376
Query: 479 LLNNSGLSAAELLAKA 494
LL + + A ++A A
Sbjct: 377 LLGRAEIKATTVMAAA 392
>gi|260904108|ref|ZP_05912430.1| DNA/RNA helicase, superfamily II [Brevibacterium linens BL2]
Length = 489
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 146/363 (40%), Positives = 208/363 (57%), Gaps = 35/363 (9%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT--- 172
++ P+ L +KGI FPIQAMT + L G+D++G+A+TG GKTL F +P+L+ +
Sbjct: 13 VAGPIVAALAAKGITHPFPIQAMTLPVALSGADIIGQAKTGTGKTLGFGIPLLQRVVGKN 72
Query: 173 ----------NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
N P S T R P LV++PTRELAKQV D + +Y
Sbjct: 73 EDGAAPADPENTPEFVSDST-ETRLPQALVVVPTRELAKQVAADLVTASTQRDIDIMTIY 131
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG + Q KLK G+DVV+GTPGR+ D R + L ++ VLDEADEML +GF+ DV
Sbjct: 132 GGMDFDPQIKKLKSGVDVVVGTPGRLLDLYGRKVLRLHKVRTVVLDEADEMLDLGFLPDV 191
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLK-------SDKKTIDLVGNEKMKAST 335
E I+ V A++ QT+LFSAT+P V ++ +++ D + + L+G
Sbjct: 192 EKIINAVP-AHR-QTMLFSATMPGAVITLARRYMSRPTHIRAHDNEDLSLLGK------- 242
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHG 391
N +V S +S+++ +++ GRTIIFT TK +A +LA L + LHG
Sbjct: 243 NTEQLVYRAHSMDKSELVARMLQAEGR-GRTIIFTRTKRTADKLAAELGDRGFQVKPLHG 301
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
D+ Q+QRE L FR G+ LVAT+VAARG+DI+DV ++ + P D + Y+HR GRTG
Sbjct: 302 DLGQAQREKALKSFREGQVDVLVATDVAARGIDIDDVTHVVNYQCPDDEKTYVHRIGRTG 361
Query: 452 RAG 454
RAG
Sbjct: 362 RAG 364
>gi|308177940|ref|YP_003917346.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
gi|307745403|emb|CBT76375.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
Re117]
Length = 538
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 134/336 (39%), Positives = 197/336 (58%), Gaps = 8/336 (2%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE FPIQA+T + L G+D++G+A+TG GKTL F +P L+ + K +
Sbjct: 41 LSEAGIEYPFPIQALTLPVALGGNDIIGQAKTGTGKTLGFGIPALQRVVREGDKGYEDLE 100
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
+ AP L++ PTRELA QV D ++ +YGG PY Q LK G DV++G
Sbjct: 101 FPGAPQALIVAPTRELAIQVGADLAQASKHSNISITTIYGGRPYEEQINALKAGTDVIVG 160
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D + ++L +K VLDEADEML +GF+ DVE IL + Q +LFSAT
Sbjct: 161 TPGRLIDLNRQRVLNLKQVKTVVLDEADEMLDLGFLPDVERILAALPPVR--QAMLFSAT 218
Query: 304 LPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
+P V ++ +++ + G++ N+R ++ + + +++ +++
Sbjct: 219 MPGAVITMARRYMTRPTHIRAQDPGDDDSLTKRNIRQLIYRAHNMDKDEMVARLLQAEGR 278
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G+TIIFT+TK SA++L+D L A +LHGD+ Q RE L FRSGK LVAT+V
Sbjct: 279 -GKTIIFTQTKRSAARLSDELIDRGFNAGSLHGDLGQGAREQALKAFRSGKVEILVATDV 337
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARG+D++DV ++ + P D Y+HR GRTGRAG
Sbjct: 338 AARGIDVDDVTHVVNLQCPDDENTYLHRVGRTGRAG 373
>gi|444305942|ref|ZP_21141717.1| DNA/RNA helicase [Arthrobacter sp. SJCon]
gi|443481746|gb|ELT44666.1| DNA/RNA helicase [Arthrobacter sp. SJCon]
Length = 557
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 206/368 (55%), Gaps = 7/368 (1%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
+EPE + E+ + + + + + E L GI FPIQAMT + L G D++
Sbjct: 19 IEPEETIISDEKPHEIAEKSFADYNVREDIVESLADAGITHPFPIQAMTLPVALSGHDII 78
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
G+A+TG GKTL F +P L+ + K AP LV++PTRELA QV D
Sbjct: 79 GQAKTGTGKTLGFGIPALQRVIGQDDPGYAKLAVPGAPQALVIVPTRELAVQVANDLQTA 138
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+YGG Y Q LK+G++VV+GTPGR+ D ++ ++ L ++K VLDEA
Sbjct: 139 SRKRNARIATIYGGRAYEPQVEALKQGVEVVVGTPGRLIDLYKQKHLSLKNVKIVVLDEA 198
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF+ DVE ++ QTLLFSAT+P V ++ +++ +++
Sbjct: 199 DEMLDLGFLPDVETLIAATPAVR--QTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDE 256
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GA 386
++R ++ S +++V+ I++ GRTIIFT+TK +A+++A+ L A
Sbjct: 257 GLTKRDIRQLIYRAHSMDKTEVVARILQARGR-GRTIIFTKTKRTAAKVAEELVDRGFAA 315
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A+HGD+ Q RE L FR+ K LVAT+VAARG+D+ DV +I + D + Y+HR
Sbjct: 316 AAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVEDVTHVINYQCVEDEKIYLHR 375
Query: 447 SGRTGRAG 454
GRTGRAG
Sbjct: 376 VGRTGRAG 383
>gi|385792629|ref|YP_005825605.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676775|gb|AEB27645.1| Cold-shock DEAD-box protein A [Francisella cf. novicida Fx1]
Length = 569
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 137/334 (41%), Positives = 194/334 (58%), Gaps = 19/334 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP++ ++ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNI--------DLKSRDRA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V D + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSD--ECQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++ D L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
+D+ + +I + P D + Y+HR GRTGRAG E
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGRE 345
>gi|296118823|ref|ZP_06837399.1| ATP-dependent RNA helicase DeaD [Corynebacterium ammoniagenes DSM
20306]
gi|295968312|gb|EFG81561.1| ATP-dependent RNA helicase DeaD [Corynebacterium ammoniagenes DSM
20306]
Length = 407
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 135/339 (39%), Positives = 201/339 (59%), Gaps = 15/339 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L ++GI F IQ +T + L+G+DL+G+ARTG GKT F +P+L+ + + A+
Sbjct: 9 DALAARGITHTFAIQELTLPIALNGTDLIGQARTGMGKTYGFGVPLLDRVFD----AADV 64
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
+P LV++PTRELA QV D + + + + GG + AQ+ L+ G+DVV
Sbjct: 65 PELDGSPRALVVVPTRELAVQVANDLSIAAAQIPVRIATILGGRDFEAQQEALRAGVDVV 124
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGRI D +R N+ L + VLDEADEML +GF+ DVE IL ++D+ QT+LFS
Sbjct: 125 VGTPGRILDLYQRKNLRLDKVSVLVLDEADEMLDLGFLPDVEKILAALKDSPH-QTMLFS 183
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCSSSARSQVIPDIIRC 359
AT+P + ++ F+ + + + + + A T+ + I+ + V+ I++
Sbjct: 184 ATMPGAIVRLARTFM---NRPVHIRADAESSAPTHASTQQIIFQAHRMDKLPVLSRILQV 240
Query: 360 YSSGGRTIIFTETKESASQ----LADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
GRT++FT TK +A+Q LADL A+HGD+ Q RE LAGFR G LVA
Sbjct: 241 -PERGRTLVFTRTKRTAAQVAQDLADLGFTVGAVHGDLNQQAREQALAGFRDGTVPILVA 299
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
T+VA+RG+D+ DV +I + P D Y+HR GRTGRAG
Sbjct: 300 TDVASRGIDVEDVTHVINYQVPDDAMTYVHRIGRTGRAG 338
>gi|295394794|ref|ZP_06805009.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
gi|294972390|gb|EFG48250.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
Length = 586
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 142/332 (42%), Positives = 189/332 (56%), Gaps = 19/332 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA T +L G D++G A+TG GKT AF LP+L S+ S
Sbjct: 33 GYESPSPIQAKTIPFLLQGRDVIGLAQTGTGKTAAFALPLLSSIAGRERPTS-------- 84
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV E Y +G + +YGG Y Q LK+G VV+GTPG
Sbjct: 85 PLALILAPTRELAIQVAEALTSYATHLGDFSVLPIYGGQSYTPQISGLKRGAHVVVGTPG 144
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHI+RG +DLS ++ VLDEADEML+MGF ED+E I K +V LFSAT+P+
Sbjct: 145 RVIDHIKRGTLDLSHVEHLVLDEADEMLKMGFQEDIEEIFAKTNPDRQVA--LFSATMPA 202
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I+ ++L +D + + K S N+R L S + + I+ G
Sbjct: 203 SIHRITGQYL-NDPAEVRI--QAKTTTSANIRQRYLTVMHSHKLDALTRILEVEKYDG-I 258
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK+ +LAD L A A++GDI Q RE T+ RSG LVAT+VAARG
Sbjct: 259 IMFVRTKQETEELADKLKARGFSAAAINGDIPQVVRERTVEALRSGSIDILVATDVAARG 318
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 319 LDVERISLVVNFDIPHDTESYVHRIGRTGRAG 350
>gi|384228359|ref|YP_005620094.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
gi|345539292|gb|AEO08159.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
Length = 602
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 138/328 (42%), Positives = 196/328 (59%), Gaps = 26/328 (7%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA ++L+G D++G A+TG GKT AF LP+L +L T AP +LVL
Sbjct: 31 PIQAACIPLLLNGHDVLGMAQTGSGKTAAFALPLLHNLNINLT----------APQILVL 80
Query: 194 LPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV E F D +G+ LYGG Y Q L++G +V+GTPGR+ DH+
Sbjct: 81 APTRELAVQVAEAFSDFSKYMIGINVLPLYGGQRYDLQLRALRQGPQIVVGTPGRLLDHL 140
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
+RG ++LS+L VLDEADEMLRMGF+EDVE I+ K+ K QT LFSAT+P ++ IS
Sbjct: 141 KRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMTKI--PKKHQTALFSATMPEAIRRIS 198
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY--SSGGRTIIFT 370
+F+ S K+ K++++ R + + +IR TIIF
Sbjct: 199 KRFMNSPKEI-------KIQSNITTRPDIKQSYWMVYGRKTDALIRFLEVEDFSATIIFV 251
Query: 371 ETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
+TK + ++A+ L + AL+GD+ Q+ RE TL ++G+ L+AT+VAARGLD++
Sbjct: 252 KTKNATLEVAEALEKNGYNSAALNGDMNQALREQTLERLKNGRLDILIATDVAARGLDVD 311
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ +I + P D E+Y+HR GRTGRAG
Sbjct: 312 RISFVINYDIPMDSESYVHRIGRTGRAG 339
>gi|197287236|ref|YP_002153108.1| ATP-dependent RNA helicase DeaD [Proteus mirabilis HI4320]
gi|194684723|emb|CAR46715.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
mirabilis HI4320]
Length = 616
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 147/364 (40%), Positives = 202/364 (55%), Gaps = 61/364 (16%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQ +LDG+D++G A+TG GKT AF LP+L +L
Sbjct: 19 LSAPILTALNDLGYEKPSPIQQQCIPFLLDGNDVLGMAQTGSGKTAAFSLPLLHNLDESL 78
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+AP +LVL PTRELA QV E DF + V + LYGG Y Q
Sbjct: 79 ----------KAPQILVLAPTRELAVQVAEAIEDFSKHLPKVNV--VALYGGQRYDVQLR 126
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH+ RG +DLS LK VLDEADEMLRMGF+EDVE IL K+
Sbjct: 127 ALRQGPQVVVGTPGRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAE 186
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+ K+ ++++S R
Sbjct: 187 H--QTALFSATMPEAIRRITRRFMNDPKEV-------RIQSSVTTR-------------- 223
Query: 353 IPDIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y + G R IIF TK + ++A+ L + AL+
Sbjct: 224 -PDISQSYWMTYGARKNEALIRFLEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALN 282
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ QS RE TL ++G+ L+AT+VAARGLD++ + L++ + P D E+Y+HR GRT
Sbjct: 283 GDMNQSLREQTLERLKNGRLDILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRT 342
Query: 451 GRAG 454
GRAG
Sbjct: 343 GRAG 346
>gi|254372659|ref|ZP_04988148.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida
GA99-3549]
gi|151570386|gb|EDN36040.1| ATP-dependent RNA helicase [Francisella novicida GA99-3549]
Length = 569
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 195/334 (58%), Gaps = 19/334 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQ +L G D++G+A+TG GKT AF LP L N AS+ RA
Sbjct: 26 GYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP----LINNMDLASR----DRA 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F+ + V L C+YGG Y +Q LK+G+ VV+GT G
Sbjct: 78 PQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIE+G + L +L+ VLDEADEMLRMGF++DV+ +L V + + Q LLFSAT+P+
Sbjct: 138 RVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHV--SEQCQRLLFSATIPT 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I ++L++ K + K K + V + + + ++ + G
Sbjct: 196 DIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG-V 251
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF +TK S ++ D L A++GD+QQSQRE + FRS K LVAT+V ARG
Sbjct: 252 IIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
+D+ + +I + P D + Y+HR GRTGRAG E
Sbjct: 312 IDLERISHVINYDMPNDTDTYVHRIGRTGRAGRE 345
>gi|403738909|ref|ZP_10951510.1| putative DEAD-box RNA helicase [Austwickia chelonae NBRC 105200]
gi|403191559|dbj|GAB78280.1| putative DEAD-box RNA helicase [Austwickia chelonae NBRC 105200]
Length = 513
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 132/345 (38%), Positives = 199/345 (57%), Gaps = 7/345 (2%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F I + + L GI + FPIQAMT + L G D++G+A+TG GKTL F +P+L +
Sbjct: 37 FGIHPEIADALAEHGIVAPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGVPLLNKVVA 96
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
Y P LV++PTRELA QV D G G+ C+YGG + Q
Sbjct: 97 PQDPGYADLDYPNRPQALVVVPTRELAVQVAADLTRAGKRRGIRVECIYGGRAFEPQITA 156
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L +G++VV+GTPGR+ D ++ +++L S++ VLDEADEML +GF+ DVE ILG E
Sbjct: 157 LTRGVEVVVGTPGRLIDLNQQRHLNLHSIRTVVLDEADEMLDLGFLPDVERILG--ETPT 214
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QT+LFSAT+P V ++ +++ + + + + + +++++
Sbjct: 215 SRQTMLFSATMPGAVVALARRYMTQPTHIRAMTTGDDSHTVQAIEQFIYRAHAMDKTEML 274
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
I++ G TI+FT TK +A+++AD L A +LHGD+ Q RE + FR GK
Sbjct: 275 SRILQAKGR-GLTIVFTRTKRTAAKVADELTDRGFAAASLHGDLGQGAREQAMRAFRKGK 333
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARG+D+ +V ++ + P D + Y+HR+GRTGRAG
Sbjct: 334 VDVLVATDVAARGIDVENVTHVVNYQCPEDEKTYLHRTGRTGRAG 378
>gi|118470234|ref|YP_889292.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium smegmatis str. MC2 155]
gi|399989304|ref|YP_006569654.1| Cold-shock DEAD-box RNA helicase [Mycobacterium smegmatis str. MC2
155]
gi|441213695|ref|ZP_20975941.1| hypothetical protein D806_5114 [Mycobacterium smegmatis MKD8]
gi|118171521|gb|ABK72417.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium smegmatis str. MC2 155]
gi|399233866|gb|AFP41359.1| Cold-shock DEAD-box RNA helicase [Mycobacterium smegmatis str. MC2
155]
gi|440625659|gb|ELQ87505.1| hypothetical protein D806_5114 [Mycobacterium smegmatis MKD8]
Length = 581
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 192/332 (57%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES IQA T +L GSD+VG A+TG GKT AF +PIL SK R
Sbjct: 40 GYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFAIPIL----------SKIDTSRRD 89
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDVVIGTPG 246
LVL PTRELA QV E F YG + + +YGG+ Y Q L++G VV+GTPG
Sbjct: 90 TQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSGLRRGAQVVVGTPG 149
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS L + VLDEADEML MGF E+VE IL + +V LFSAT+P+
Sbjct: 150 RVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYKQVA--LFSATMPA 207
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+TK+L +++ K + N+ + + + + I+ G
Sbjct: 208 AIRKITTKYLHD---PVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILEV-EEGDAM 263
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK++ ++AD L A A++GDI Q+QRE T++ + G L+AT+VAARG
Sbjct: 264 IVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIATDVAARG 323
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + +I + P D E+Y+HR GRTGRAG
Sbjct: 324 LDVERISHVINYDIPHDTESYVHRIGRTGRAG 355
>gi|87302313|ref|ZP_01085138.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
gi|87283238|gb|EAQ75194.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
Length = 645
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 201/327 (61%), Gaps = 23/327 (7%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ ++ G DLVG+A+TG GKT AF LP+L L P + R P VLVL
Sbjct: 110 PIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLARL--DPQQ--------RTPQVLVL 159
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV E F+ Y + +YGGA + Q +LK+G+ +V+GTPGR+ DH+
Sbjct: 160 TPTRELALQVAEAFNGYAAKLPQVRVLPIYGGADFRDQIVRLKRGVQIVVGTPGRVMDHM 219
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
+G +DLS L+ VLDEADEMLRMGF++DVE +L ++ + Q +LFSAT+PS ++ +S
Sbjct: 220 RQGTLDLSGLRCLVLDEADEMLRMGFIDDVEWVLEQL--PQQRQVVLFSATMPSEIRRLS 277
Query: 313 TKFLKSDKK-TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTE 371
K+L++ + TI G E ++ RH+V+ + + + + ++ SS G IIF
Sbjct: 278 RKYLQNPAEVTIQQKGAE--NSTIRQRHLVV--HGAQKLEALTRVLEAESSEG-VIIFAR 332
Query: 372 TKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427
TK +++ L L+GD+ Q+QRE T+ RSG+ LVAT+VAARGLD++
Sbjct: 333 TKAITLTVSEALEQQGYDVAVLNGDVPQNQRERTVERLRSGQVNVLVATDVAARGLDVDR 392
Query: 428 VQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ L+I + P D EAY+HR GRTGRAG
Sbjct: 393 ITLVINYDIPFDSEAYVHRIGRTGRAG 419
>gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
44385]
gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
44385]
Length = 823
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 138/336 (41%), Positives = 199/336 (59%), Gaps = 21/336 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
+K G E+ PIQA T ++ G D+VG A+TG GKT AF LPIL L ++ KK
Sbjct: 169 VKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLD----RSQKK-- 222
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV + F + +G + +YGG Y Q L++G +V+
Sbjct: 223 ----PQALVLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVV 278
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ERG++DLS LK+ VLDEADEML MGF EDVE IL + QT LFSA
Sbjct: 279 GTPGRVIDHLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHK--QTALFSA 336
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ +S ++L+ D + + + + + + N+ L + + + I+
Sbjct: 337 TMPASIRRLSKQYLE-DPREVTI--KSQQRTADNIHQQYLLVNHHYKLDALTRILEVTEF 393
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
I+F TK++ +LA+ L A A++GD+ Q+QRE T+ R G+ LVAT+V
Sbjct: 394 DA-MIMFARTKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDV 452
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 453 AARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAG 488
>gi|78486348|ref|YP_392273.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78364634|gb|ABB42599.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
Length = 574
Score = 238 bits (607), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 141/344 (40%), Positives = 197/344 (57%), Gaps = 21/344 (6%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ + L+ G E+ PIQ ++L G D++G A+TG GKT AF LPIL
Sbjct: 12 LSAPILKTLEEIGYETPSPIQEQAIPVLLKGGDILGMAQTGTGKTAAFALPIL------- 64
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEFKL 234
SK + P VLVL PTRELA QV E F + G GL +YGG+ Y Q L
Sbjct: 65 ---SKIDLKQKDPQVLVLAPTRELAIQVAEAFQTFSRGVKGLHVLPIYGGSEYGTQIRAL 121
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K+G+ VV+GTPGR+ DHI++G + L +LK +LDEADEMLRMGF++DVE IL D
Sbjct: 122 KRGVHVVVGTPGRVMDHIKKGTLKLDTLKVMILDEADEMLRMGFIDDVEWILKHTPDTR- 180
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P V I+ +L+ +++ +K ++ + S + +
Sbjct: 181 -QIALFSATMPKEVHRIANTYLQD---PTEVIIKQKAATASLIEQKYWLVSGLHKLDALT 236
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I+ + G IIF TK + +LA+ L A AL+GD+ Q+QRE T+ + GK
Sbjct: 237 RILEAETFDG-IIIFVRTKTATVELAEKLEARGYAAAALNGDVAQNQRERTVDQLKKGKL 295
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
L+AT+V ARGLD+ + +I + P D E+Y+HR GRTGRAG
Sbjct: 296 DILIATDVVARGLDVERISHVINYDIPYDNESYVHRIGRTGRAG 339
>gi|423351179|ref|ZP_17328830.1| hypothetical protein HMPREF9719_01125 [Turicella otitidis ATCC
51513]
gi|404386815|gb|EJZ81953.1| hypothetical protein HMPREF9719_01125 [Turicella otitidis ATCC
51513]
Length = 437
Score = 238 bits (607), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 152/386 (39%), Positives = 223/386 (57%), Gaps = 25/386 (6%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES +P+ + ++ + + L GIE F IQ + + LDG D++G+ARTG GKTLA+
Sbjct: 11 ESRNPS-FAELGVAAEIVDALNEGGIERTFAIQKLALPLALDGKDIIGQARTGMGKTLAY 69
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+P+L+ + + ++ T P LV+ PTRELA+QV D + + L C+YG
Sbjct: 70 GVPLLDRVFD----SADVTAPDGTPRALVVAPTRELARQVGTDLENAARGLPLEVLCIYG 125
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G + Q LKKG+DVV+GTPGR+ D RG +DL ++ VLDEADEML +GF+ DV
Sbjct: 126 GQDFAPQLEGLKKGVDVVVGTPGRLLDLNRRGALDLGGVEIVVLDEADEMLDLGFLPDVT 185
Query: 284 LILGKVEDANKVQTLLFSATLPSWV----KHISTK--FLKSDKKTIDLVGNEKMKASTNV 337
+L ++ A + QTLLFSAT+P + + + TK ++++ T D ++ AST
Sbjct: 186 KLL-ELAPAERRQTLLFSATMPGSILGLARSVMTKPVHIRAEAPTED-----QLHAST-- 237
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDI 393
+ +V + VI I++ G+TI+F TK S + A+ L A+HGD+
Sbjct: 238 KQVVFQSHKLDKKAVIARILQAEGR-GKTIMFARTKRSTALAAEDLAERGFAVAAVHGDL 296
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
QS RE +LA R G LVAT+VAARGLDI+DV +I E P D + Y+HR GRTGRA
Sbjct: 297 PQSARERSLAALRDGSCDVLVATDVAARGLDIDDVTHVINYEVPTDPQTYVHRIGRTGRA 356
Query: 454 GVEAAETITQVSDSVIPAFKSAAEEL 479
G ++ +T V + A++ EEL
Sbjct: 357 G-KSGTAVTLVGYDELHAWRVIDEEL 381
>gi|19552380|ref|NP_600382.1| helicase [Corynebacterium glutamicum ATCC 13032]
gi|21323923|dbj|BAB98549.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
ATCC 13032]
gi|385143290|emb|CCH24329.1| putative helicase [Corynebacterium glutamicum K051]
Length = 732
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 143/363 (39%), Positives = 207/363 (57%), Gaps = 24/363 (6%)
Query: 100 QERGESEHPNAVSRFR-ISVPLR--EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTG 156
Q ES A S F + +P R + ++ G E+ PIQA T ++++G D+VG A+TG
Sbjct: 90 QPSNESSSTEAKSGFDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTG 149
Query: 157 QGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG- 215
GKT AF LPIL + R+P LVL PTRELA QV + F + VG
Sbjct: 150 TGKTAAFALPILARIDKSV----------RSPQALVLAPTRELALQVADSFQSFADHVGG 199
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L +YGG Y Q L++G +V+GTPGRI DH+E+G++D+S L+F VLDEADEML
Sbjct: 200 LNVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLN 259
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
MGF EDVE IL D +V LFSAT+P+ ++ +S ++L + ++ + + +T
Sbjct: 260 MGFQEDVERILEDTPDEKQVA--LFSATMPNGIRRLSKQYLNN---PAEITVKSETRTNT 314
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHG 391
N+ L + + + I+ I+F TK ++A+ L A A++G
Sbjct: 315 NITQRFLNVAHRNKMDALTRILEVTEFEA-MIMFVRTKHETEEVAEKLRARGFSAAAING 373
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q+QRE T+ + G+ LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTG
Sbjct: 374 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTG 433
Query: 452 RAG 454
RAG
Sbjct: 434 RAG 436
>gi|227357070|ref|ZP_03841440.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
mirabilis ATCC 29906]
gi|425070180|ref|ZP_18473294.1| cold-shock DEAD box protein A [Proteus mirabilis WGLW6]
gi|425074004|ref|ZP_18477109.1| cold-shock DEAD box protein A [Proteus mirabilis WGLW4]
gi|227162762|gb|EEI47725.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
mirabilis ATCC 29906]
gi|404594415|gb|EKA94997.1| cold-shock DEAD box protein A [Proteus mirabilis WGLW4]
gi|404595696|gb|EKA96232.1| cold-shock DEAD box protein A [Proteus mirabilis WGLW6]
Length = 611
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 147/364 (40%), Positives = 202/364 (55%), Gaps = 61/364 (16%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQ +LDG+D++G A+TG GKT AF LP+L +L
Sbjct: 14 LSAPILTALNDLGYEKPSPIQQQCIPFLLDGNDVLGMAQTGSGKTAAFSLPLLHNLDESL 73
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+AP +LVL PTRELA QV E DF + V + LYGG Y Q
Sbjct: 74 ----------KAPQILVLAPTRELAVQVAEAIEDFSKHLPKVNV--VALYGGQRYDVQLR 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH+ RG +DLS LK VLDEADEMLRMGF+EDVE IL K+
Sbjct: 122 ALRQGPQVVVGTPGRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAE 181
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+ K+ ++++S R
Sbjct: 182 H--QTALFSATMPEAIRRITRRFMNDPKEV-------RIQSSVTTR-------------- 218
Query: 353 IPDIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y + G R IIF TK + ++A+ L + AL+
Sbjct: 219 -PDISQSYWMTYGARKNEALIRFLEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALN 277
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ QS RE TL ++G+ L+AT+VAARGLD++ + L++ + P D E+Y+HR GRT
Sbjct: 278 GDMNQSLREQTLERLKNGRLDILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRT 337
Query: 451 GRAG 454
GRAG
Sbjct: 338 GRAG 341
>gi|296270955|ref|YP_003653587.1| DEAD/DEAH box helicase [Thermobispora bispora DSM 43833]
gi|296093742|gb|ADG89694.1| DEAD/DEAH box helicase domain protein [Thermobispora bispora DSM
43833]
Length = 618
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 144/341 (42%), Positives = 202/341 (59%), Gaps = 18/341 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L+++GI + FPIQ M + L G D++G+ARTG GKT AF +P L+ L P K
Sbjct: 19 IADALETEGIVTPFPIQEMALPLALSGQDIIGQARTGTGKTYAFGIPTLQ-LIGKPRKNR 77
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
KK P L+L PTRELA QV ED + G +G +YGG Y Q LK G+D
Sbjct: 78 KK------PRGLILAPTRELALQVTEDLVLAAGKLGTRITTVYGGRAYEPQIEALKNGVD 131
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ D + + ++DLS + VLDEAD ML +GF+ D+E I+ + + K QT+L
Sbjct: 132 VVVGTPGRLLDLVNQKHLDLSQIAILVLDEADRMLDLGFLPDIERIIKLLPE--KRQTML 189
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P + +S ++L ++ T +++A T R + R I + R
Sbjct: 190 FSATMPGEIVALSRRYL--NRPTHIRAEIAEIEAETKPRTTQF-VYRTHRMDKIEILARV 246
Query: 360 YSSGGRTI--IFTETKES----ASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTL 413
S T+ +F ETK + A+QL D A+HGD+ QSQRE L FR+GK L
Sbjct: 247 LQSTELTLAMVFCETKRACDMVANQLRDRGFAVAAVHGDLSQSQREQALRAFRNGKINVL 306
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARG+D++DV +I + P+D + YIHR GRTGRAG
Sbjct: 307 VATDVAARGIDVDDVTHVINYDLPQDEKTYIHRIGRTGRAG 347
>gi|453364213|dbj|GAC80062.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia malaquae NBRC
108250]
Length = 574
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 199/346 (57%), Gaps = 21/346 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F I +R + G E+ PIQA T +L+G D+VG A+TG GKT AF +P+L
Sbjct: 18 FDIDGRVRAAVDEVGYETPSPIQAATIPPLLEGRDVVGLAQTGTGKTAAFAIPVL----- 72
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEF 232
S+ R P LVL PTRELA QV E F Y + + +YGG Y Q
Sbjct: 73 -----SRIDTSARKPQALVLAPTRELALQVSEAFGRYASKMPEVKVLPIYGGQSYGVQLS 127
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G V++GTPGR+ DH+++G +DLS L+F VLDEADEML MGF EDVE IL D
Sbjct: 128 GLRRGAQVIVGTPGRVIDHLDKGTLDLSELEFLVLDEADEMLTMGFAEDVERILADTPD- 186
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
K Q LFSAT+P+ + ++ K+L + + ++ K ++N+ L S +
Sbjct: 187 -KKQVALFSATMPASIGRLARKYLNNPQ---EVTVKAKTATASNITQKYLQVSHQRKLDA 242
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ ++ + G IIF TK + +LA+ L A A++GD+ Q+QRE T+ + G
Sbjct: 243 LTRVLEVETFDG-MIIFARTKSATEELAEKLRSRGLSAMAINGDMVQAQRERTINQLKDG 301
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD++ + ++ + P DVE+Y+HR GRTGRAG
Sbjct: 302 SLDILVATDVAARGLDVDRISHVVNYDIPHDVESYVHRIGRTGRAG 347
>gi|293189188|ref|ZP_06607912.1| ATP-dependent RNA helicase DeaD, partial [Actinomyces odontolyticus
F0309]
gi|292821860|gb|EFF80795.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
Length = 502
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 210/357 (58%), Gaps = 7/357 (1%)
Query: 102 RGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
+GE + + F ++ P+ + L+ KGI FPIQA+T L+ D++G+A+TG GKTL
Sbjct: 56 KGEDLDEKSFADFGVTDPIVDALEDKGITHPFPIQALTLGPALERHDIIGQAKTGTGKTL 115
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221
F +P+LE + + + P L++LPTREL KQV +D + +
Sbjct: 116 GFGIPVLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTRIVEI 175
Query: 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281
YGG + Q L++G D+V+GTPGR+ D + +G++ LS ++ VLDEADEML +GF+ D
Sbjct: 176 YGGVAFEPQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPD 235
Query: 282 VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341
VE +L +V + N+ T+LFSAT+P V ++ +F+ +++ + V+ ++
Sbjct: 236 VETLLSRVPE-NR-HTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVI 293
Query: 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQ 397
+ + +V+ I++ G RT+IF TK +A++L + L +LHGD+ Q
Sbjct: 294 YRVHAMNKVEVVARILQAEGRG-RTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGA 352
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RE L FR+GK LVAT+VAARG+D++DV +I + P D + YIHR GRTGRAG
Sbjct: 353 REQALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAG 409
>gi|389774439|ref|ZP_10192558.1| DNA/RNA helicase [Rhodanobacter spathiphylli B39]
gi|388438038|gb|EIL94793.1| DNA/RNA helicase [Rhodanobacter spathiphylli B39]
Length = 638
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 207/376 (55%), Gaps = 25/376 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +++G D++G+A+TG GKT AF LPIL + P K
Sbjct: 28 LADVGYESPSPIQAATIPPLMEGRDVLGQAQTGTGKTAAFALPILSRIDLKPGK------ 81
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P LVL PTRELA QV E F Y + GL +YGG Y Q LK+G+ VV+
Sbjct: 82 ----PQALVLAPTRELAIQVAEAFQKYATHMRGLQVLPIYGGQSYGPQLHSLKRGVHVVV 137
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+++G +DLS LK+ VLDEADEMLRMGF++DVE +L +V LFSA
Sbjct: 138 GTPGRVIDHLDKGTLDLSELKYLVLDEADEMLRMGFIDDVEKVLQATPPQRQVA--LFSA 195
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ I+ + LK +++ + N+ S + + I+
Sbjct: 196 TMPTVIRKIAQRHLKD---PVEVTIKSSTTTAANIHQRYWFVSGMHKLDALTRILEAEPF 252
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ +LA L A A++GDI Q QRE + + GK LVAT+V
Sbjct: 253 DA-MIIFARTKQATEELAGKLQARGLAAAAINGDIAQPQRERVIQQLKDGKLDILVATDV 311
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD---SVIPAFKSA 475
AARGLD+ + + + P D E+Y+HR GRTGRAG + E I VS ++ A + A
Sbjct: 312 AARGLDVERISHVFNYDIPYDTESYVHRIGRTGRAG-RSGEAILFVSPRERGMLGAIERA 370
Query: 476 AEELLNNSGLSAAELL 491
+ + L + E++
Sbjct: 371 TRQPIEQMQLPSVEVV 386
>gi|404422771|ref|ZP_11004447.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium fortuitum subsp. fortuitum DSM 46621]
gi|403655804|gb|EJZ10637.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium fortuitum subsp. fortuitum DSM 46621]
Length = 576
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/332 (41%), Positives = 195/332 (58%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES IQA T +L GSD+VG A+TG GKT AF +PIL + +S+KT
Sbjct: 32 GYESPSAIQAATIPAMLAGSDVVGLAQTGTGKTAAFAIPILSKIDT----SSRKT----- 82
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
LVL PTRELA QV E F YG + + +YGGA Y Q L++G VV+GTPG
Sbjct: 83 -QALVLAPTRELALQVAEAFGRYGAHLPEINVLPIYGGASYTVQLSGLRRGAQVVVGTPG 141
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG +DLS+L + VLDEADEML MGF E+VE IL + +V LFSAT+P
Sbjct: 142 RVIDHLERGTLDLSNLDYLVLDEADEMLTMGFAEEVERILADTPEYKQVA--LFSATMPP 199
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+TK+L +++ K + N+ + + + + + ++ G
Sbjct: 200 AIRKITTKYLHD---PVEVTVKAKTATAENITQRFIQVAGARKLDALTRVLEV-EEGDAM 255
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK++ ++A+ L A A++GDI Q+QRE T+ + G L+AT+VAARG
Sbjct: 256 IVFVRTKQATEEVAERLRSRGFAAAAINGDINQAQRERTITALKDGTIDILIATDVAARG 315
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 316 LDVERISHVVNYDIPHDTESYVHRIGRTGRAG 347
>gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase [Mycobacterium sp. MCS]
gi|119870071|ref|YP_940023.1| DEAD/DEAH box helicase [Mycobacterium sp. KMS]
gi|126436556|ref|YP_001072247.1| DEAD/DEAH box helicase [Mycobacterium sp. JLS]
gi|108771350|gb|ABG10072.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. MCS]
gi|119696160|gb|ABL93233.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. KMS]
gi|126236356|gb|ABN99756.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. JLS]
Length = 557
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 193/331 (58%), Gaps = 20/331 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ IQA T +L GSD+VG A+TG GKT AF +PIL SK RA
Sbjct: 32 GYETPSAIQAATIPAMLAGSDVVGLAQTGTGKTAAFAIPIL----------SKIDPNSRA 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
LVL PTRELA QV E F YG + + +YGG+ Y Q LK+G VV+GTPGR
Sbjct: 82 TQALVLAPTRELALQVAEAFGRYGAHLPVNVLPVYGGSSYGPQMAGLKRGAQVVVGTPGR 141
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ DH+E+G++DLS L + VLDEADEML+MGF EDVE IL + +V LFSAT+P
Sbjct: 142 VIDHLEKGSLDLSHLDYMVLDEADEMLQMGFAEDVERILSDTPEYKQVA--LFSATMPPG 199
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
+K I+ K+L +++ K + + N+ + S + + ++ G I
Sbjct: 200 IKKITKKYLHD---PVEVTVKSKTQTAENITQRYIQVSYPRKMDALTRLLETEQGDG-MI 255
Query: 368 IFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
+F TK++ ++A+ L A A++GDI Q+ RE T++ + G LVAT+VAARGL
Sbjct: 256 VFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDGSIDILVATDVAARGL 315
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
D+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 316 DVERISHVVNFDIPHDPESYVHRIGRTGRAG 346
>gi|220913250|ref|YP_002488559.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
gi|219860128|gb|ACL40470.1| DEAD/DEAH box helicase domain protein [Arthrobacter
chlorophenolicus A6]
Length = 561
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 205/368 (55%), Gaps = 7/368 (1%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
+EPE + E+ + + + + + + L GI FPIQAMT + L G D++
Sbjct: 19 IEPEETIISDEKPHEIAEKSFADYNVRQDIVDSLSDAGITHPFPIQAMTLPVALSGHDII 78
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
G+A+TG GKTL F +P L+ + K AP LV++PTRELA QV D
Sbjct: 79 GQAKTGTGKTLGFGIPALQRVVGRDDAGYDKLAVPGAPQALVIVPTRELAVQVASDLQAA 138
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+YGG Y Q LK G++VV+GTPGR+ D + ++ L +++ VLDEA
Sbjct: 139 STKRNARIATIYGGRAYEPQVEALKNGVEVVVGTPGRLIDLYRQKHLSLKNVRIVVLDEA 198
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF+ DVE I+ QTLLFSAT+P V ++ +++ +++
Sbjct: 199 DEMLDLGFLPDVETIIAGTPAVR--QTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDE 256
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GA 386
++R ++ S +++V+ I++ GRTIIFT+TK +A+++A+ L A
Sbjct: 257 GLTKRDIRQLIYRAHSMDKTEVVARILQARGR-GRTIIFTKTKRTAAKVAEELVDRGFAA 315
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A+HGD+ Q RE L FR+ K LVAT+VAARG+D++DV +I + D + Y+HR
Sbjct: 316 AAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHR 375
Query: 447 SGRTGRAG 454
GRTGRAG
Sbjct: 376 VGRTGRAG 383
>gi|383826631|ref|ZP_09981754.1| cold-shock DEAD-box protein, DeaD [Mycobacterium xenopi RIVM700367]
gi|383332437|gb|EID10918.1| cold-shock DEAD-box protein, DeaD [Mycobacterium xenopi RIVM700367]
Length = 566
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/354 (40%), Positives = 202/354 (57%), Gaps = 25/354 (7%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P A +I + + G ES IQA T ++ GSD+VG A+TG GKT AF +PI
Sbjct: 12 PAAFDDLQIHPSVLRAIAEVGYESPSAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPI 71
Query: 168 LESL--TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGG 224
L + T+ T+A LVL PTRELA QV E F YG + LT+ +YGG
Sbjct: 72 LSRIDTTSNATQA------------LVLAPTRELALQVSEAFSRYGAHLPRLTALPIYGG 119
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
A Y Q L++G VV+GTPGR+ DH+ERG +DLS + + VLDEADEML MGF EDVE
Sbjct: 120 ASYSVQLAGLRRGAQVVVGTPGRVIDHLERGTLDLSRVDYLVLDEADEMLAMGFAEDVER 179
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
IL + +V LFSAT+P ++ I+ K+L + +++ K + N+ +
Sbjct: 180 ILSDTPEYKQVA--LFSATMPPAIRAITAKYL---HEPLEITVEAKTTTAENISQRYIQV 234
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREV 400
+ + + ++ I+F TK++ ++A+ L A A++GDI Q+QRE
Sbjct: 235 AGPRKMDALTRVLEVEPFEA-MIVFVRTKQATEEVAEKLCARGFSAAAINGDIPQTQRER 293
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
T+A + G LVAT+VAARGLD++ V ++ + P D E+Y+HR GRTGRAG
Sbjct: 294 TIAALKDGGLDILVATDVAARGLDVDRVSHVLNYDIPHDTESYVHRIGRTGRAG 347
>gi|451943907|ref|YP_007464543.1| hypothetical protein A605_05875 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903294|gb|AGF72181.1| hypothetical protein A605_05875 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 697
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 196/332 (59%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +++DG D+VG A+TG GKT AF LP+L + R+
Sbjct: 102 GYETPSPIQAETIPVLMDGRDVVGLAQTGTGKTAAFALPVLARIDVAE----------RS 151
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV + F + +G + +YGG Y Q L++G +++GTPG
Sbjct: 152 PQALVLAPTRELALQVADAFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGAQIIVGTPG 211
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G++D+S+L+F VLDEADEML MGF EDVE IL D +V LFSAT+P+
Sbjct: 212 RVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILADTPDEKQVA--LFSATMPN 269
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS ++L ++ + + + +TN+ L + + I I+
Sbjct: 270 GIRRISKQYLNDPRE---ITVKSETRTNTNITQRYLHVAHRNKLDAITRILEVTEFDA-M 325
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK ++A+ L A A++GDI Q+QRE T+ ++G+ LVAT+VAARG
Sbjct: 326 IVFVRTKHETEEIAEKLRARGFSAAAINGDIAQNQRERTVDQLKNGRLDILVATDVAARG 385
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 386 LDVERISHVLNYDIPHDTESYVHRIGRTGRAG 417
>gi|417303385|ref|ZP_12090443.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
gi|327540357|gb|EGF26943.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
Length = 862
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 153/399 (38%), Positives = 222/399 (55%), Gaps = 28/399 (7%)
Query: 64 RSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFR---ISVPL 120
+SE ++L PV + + + EP V+ ++ ES P A FR + +
Sbjct: 191 QSEPGAKLAPPVREELAPPAQNQSAQTAEP---VKAEKAPESNEP-AEPLFRDLDLRAEV 246
Query: 121 REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180
++ + + G + PIQA +LDG D++ +++TG GKT AF LPIL S+
Sbjct: 247 QKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPIL----------SR 296
Query: 181 KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGID 239
R P VLVL PTRELA QV F YG + G +YGG Y Q +L++G+
Sbjct: 297 VDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGVQ 356
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ DH++RG +DL SL VLDEADEML MGF+EDV+ +L K + +V L
Sbjct: 357 VVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQV--AL 414
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSATLP ++ I+ ++L +D I + K + +VR L S + + I+
Sbjct: 415 FSATLPKPIRKIADEYL-NDPARITI--KSKTITAASVRQRALFVSPRDKIDALTRILEV 471
Query: 360 YSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+ G I+FT+TK+S +A+ L A AL+GD+ Q RE T+ + G+ LVA
Sbjct: 472 EETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 530
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
T+VAARGLD+ + + + P D E+Y+HR GRTGRAG
Sbjct: 531 TDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAG 569
>gi|312140644|ref|YP_004007980.1| dead/deah box helicase [Rhodococcus equi 103S]
gi|325675727|ref|ZP_08155411.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
gi|311889983|emb|CBH49301.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
gi|325553698|gb|EGD23376.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
Length = 545
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/360 (40%), Positives = 202/360 (56%), Gaps = 16/360 (4%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
E+ P + + + L GIE F IQ +T + L G DL+G+ARTG GKT F
Sbjct: 36 ETHTPPTFGELGVRDEIVKALAEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGF 95
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTS 218
+P+L ++ T S T P LV++PTREL QV +D + + G L
Sbjct: 96 GIPLLHRVS---TADSGTTPLDGTPRALVIVPTRELCVQVTQDLENASKYLKSGEKKLEV 152
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
+YGG PY Q L+KG+DVV+GTPGR+ D +G++ L + VLDEADEML +GF
Sbjct: 153 LSIYGGRPYEQQIDALRKGVDVVVGTPGRLLDLANQGHLILGKVGVLVLDEADEMLDLGF 212
Query: 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338
+ D+E ILG V D K QT+LFSAT+P + ++ FL + +
Sbjct: 213 LPDIERILGMVPD--KRQTMLFSATMPGPIITLARTFLTQPTHIRAEEADSSAVHERTTQ 270
Query: 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQ 394
HI + +++++ +++ G T+IFT TK +A ++AD L A+HGD+
Sbjct: 271 HIYR-AHALDKAEMVARVLQADGRGA-TMIFTRTKRTAQKVADDLNERGFNVGAVHGDLG 328
Query: 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
Q RE LAGFRSGK LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG
Sbjct: 329 QIAREKALAGFRSGKVDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAG 388
>gi|340374345|ref|XP_003385698.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Amphimedon queenslandica]
Length = 588
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 158/420 (37%), Positives = 217/420 (51%), Gaps = 59/420 (14%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G + F IQA T L+G +L+GRA TG GKTLA+ LPI+ L++ T+
Sbjct: 72 LSRNGYTTPFEIQAKTLPHTLEGKNLIGRAITGSGKTLAYALPIINKLSSSKTRG----- 126
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
P LVL PTREL +QV E + + L LYGGA Y +QE +L+ G DVV
Sbjct: 127 ---VPRALVLTPTRELCRQVTEC--ISSLSSNLRCVSLYGGASYSSQERELRYGADVVCA 181
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D I RGN+ L + + +LDEADE+L F ++ +L + + Q LLFSAT
Sbjct: 182 TPGRLNDQINRGNLPLDNFQIVILDEADELLTPNFKIQIDDVLA--DTPSDKQMLLFSAT 239
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA-RSQVIPDIIRCYSS 362
+P VK + +++K IDL + + ++H VL + I D+I YS
Sbjct: 240 MPPNVKEVIRQYMKQ-SVVIDLTASSN-RLPPAIKHKVLRLDRGMDKFGTILDLINVYSP 297
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
R I+FT TK AS L L A +LHGD+ Q RE L FRSGK + AT+V
Sbjct: 298 -QRAIVFTTTKIQASDLGSFLSRNGVSATSLHGDLSQQMRETCLERFRSGKIKIIAATDV 356
Query: 419 AARGLDINDVQLIIQCEPPRD-VEAYIHRSGRTGRAGVEAA------------------- 458
AARG+DI ++ ++Q EPP +++Y+HRSGRTGR G+
Sbjct: 357 AARGIDIPEIDFVLQIEPPPSGIDSYVHRSGRTGRKGLPGTSILLLSSSQDSQYFLRELK 416
Query: 459 --------------ETITQVSDSVIPAFKSAAEELLNNSGLSAAELL-----AKALAKAV 499
E IT+ DS + + K+ +E L N+ L AE L AKALA A+
Sbjct: 417 RVVQVEEIKRPSRDEVITRSLDSAVKSIKAKKDEKLINAALPLAEELISEDGAKALASAI 476
>gi|340359575|ref|ZP_08682056.1| ATP-dependent RNA helicase DeaD, partial [Actinomyces sp. oral
taxon 448 str. F0400]
gi|339884370|gb|EGQ74163.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 448
str. F0400]
Length = 512
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 154/382 (40%), Positives = 222/382 (58%), Gaps = 16/382 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLT 172
F + + + L +KGI FPIQA+T + LDG D++G+A+TG GKTL F +P+L ++L
Sbjct: 63 FGVEPEICDALTAKGIIHPFPIQALTLPVALDGQDIIGQAKTGTGKTLGFAIPLLMDTLG 122
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G G +P L++LPTRELAKQV E+ V + +YGG Y Q
Sbjct: 123 PGEDGWDADPASG-SPQALIVLPTRELAKQVAEELAVAAAGRTVRIVQVYGGRAYEPQIE 181
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L +G ++V+GTPGR+ D ++RG +DL+ + VLDEADEML +GF+ DVE IL +
Sbjct: 182 ALAEGAEIVVGTPGRLIDLMDRGVLDLTHVTTVVLDEADEMLDLGFLPDVEKILARTR-- 239
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
+ QT+LFSAT+P V ++ +++ K G+E M T + +V + + +
Sbjct: 240 SDRQTMLFSATMPGAVVALARRYMTKPTHIRAQDPGDEGMTVKTT-QQVVYRTHALNKVE 298
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ + GRTIIF TK + +++AD L ALHGD+ Q RE L FR+
Sbjct: 299 VVARILQA-ADRGRTIIFARTKRTCARVADDLASRGFATAALHGDLGQGAREQALRAFRN 357
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDS 467
GK LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG + IT V
Sbjct: 358 GKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAG-HSGTAITFVDWD 416
Query: 468 VIPAFKSAAEELLNNSGLSAAE 489
IP ++ A L GL AE
Sbjct: 417 DIPRWRLIARAL----GLPVAE 434
>gi|154509558|ref|ZP_02045200.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
17982]
gi|153799192|gb|EDN81612.1| DEAD/DEAH box helicase [Actinomyces odontolyticus ATCC 17982]
Length = 581
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 210/357 (58%), Gaps = 7/357 (1%)
Query: 102 RGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
+GE + + F ++ P+ + L+ +GI FPIQA+T L+ D++G+A+TG GKTL
Sbjct: 56 KGEDLDKKSFADFGVTDPIVDALEDQGITHPFPIQALTLGPALERHDIIGQAKTGTGKTL 115
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221
F +P+LE + + + P L++LPTREL KQV +D + +
Sbjct: 116 GFGIPVLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTRIVEI 175
Query: 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281
YGG + Q L++G D+V+GTPGR+ D + +G++ LS ++ VLDEADEML +GF+ D
Sbjct: 176 YGGVAFEPQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPD 235
Query: 282 VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341
VE +L +V + N+ T+LFSAT+P V ++ +F+ +++ + V+ ++
Sbjct: 236 VETLLSRVPE-NR-HTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVI 293
Query: 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQ 397
+ + +V+ I++ G RT+IF TK +A++L + L +LHGD+ Q
Sbjct: 294 YRVHAMNKVEVVARILQAEGRG-RTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGA 352
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RE L FR+GK LVAT+VAARG+D++DV +I + P D + YIHR GRTGRAG
Sbjct: 353 REQALRAFRNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAG 409
>gi|116671331|ref|YP_832264.1| DEAD/DEAH box helicase [Arthrobacter sp. FB24]
gi|116611440|gb|ABK04164.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24]
Length = 585
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 208/368 (56%), Gaps = 7/368 (1%)
Query: 91 VEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLV 150
+EPE + E+ + + + + + E L GI FPIQAMT + L G D++
Sbjct: 19 IEPEETIISDEKPHEIEEKSFADYNVRADIVESLADAGITHPFPIQAMTLPVALAGHDII 78
Query: 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210
G+A+TG GKTL F +P L+ + K AP LV++PTRELA QV +D +
Sbjct: 79 GQAKTGTGKTLGFGIPALQRVVGRDDPGFDKLAVPGAPQALVIVPTRELAVQVAKDLENA 138
Query: 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270
+YGG Y Q L+KG+++V+GTPGR+ D ++ ++ L ++K +LDEA
Sbjct: 139 ARKRNARIATIYGGRAYEPQVDSLQKGVEIVVGTPGRLIDLYKQKHLSLKNVKIVILDEA 198
Query: 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330
DEML +GF+ DVE ++ QTLLFSAT+P V ++ +++ +++
Sbjct: 199 DEMLDLGFLPDVETLIAGTPAVR--QTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDE 256
Query: 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GA 386
++R ++ S + +V+ I++ GRTIIFT+TK +A+++A+ L A
Sbjct: 257 GLTKRDIRQLIYRAHSMDKIEVVARILQARGR-GRTIIFTKTKRTAAKVAEELVDRGFAA 315
Query: 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
A+HGD+ Q RE L FR+ K LVAT+VAARG+D++DV +I + D + Y+HR
Sbjct: 316 AAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHR 375
Query: 447 SGRTGRAG 454
GRTGRAG
Sbjct: 376 VGRTGRAG 383
>gi|358445609|ref|ZP_09156207.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
gi|356608477|emb|CCE54475.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
Length = 410
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/339 (40%), Positives = 201/339 (59%), Gaps = 15/339 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L ++ I F IQ +T + L+G+DL+G+ARTG GKT F +P+L+ + + A+
Sbjct: 9 DALAARDINHTFAIQELTLPIALNGTDLIGQARTGMGKTYGFGVPLLDRVFD----AADV 64
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
P LV++PTRELA QV D + + + + GG + AQ+ L+ G+DVV
Sbjct: 65 PELDGTPRALVVVPTRELAVQVASDLSIAAAQIPVRITTILGGRDFDAQKQALRSGVDVV 124
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ D +R ++ L + VLDEADEML +GF+ D+E IL +ED+ QT+LFS
Sbjct: 125 VGTPGRLLDLYQRKDLRLDKVSVLVLDEADEMLDLGFLPDIEKILAALEDSPH-QTMLFS 183
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCSSSARSQVIPDIIRC 359
AT+P + ++ F+ K+ + + + + A T+ R +V + V+ I++
Sbjct: 184 ATMPGAIVRLARSFM---KQPVHIRADAESSAHTHASTRQVVFQAHRMDKLPVLSRILQI 240
Query: 360 YSSGGRTIIFTETKESASQ----LADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
RTI+FT TK +A+Q LADL A+HGD+ Q RE L+GFR GK LVA
Sbjct: 241 -PERERTIVFTRTKRTAAQVAQELADLGFTVGAVHGDLHQQARERALSGFRDGKVPILVA 299
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
T+VAARG+DI+DV +I + P D Y+HR GRTGRAG
Sbjct: 300 TDVAARGIDIDDVTHVINYQVPDDAMTYVHRIGRTGRAG 338
>gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256584603|gb|ACU95736.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 559
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 202/360 (56%), Gaps = 18/360 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQA+T + L G D++G+ARTG GKTL F +P+L+ L G
Sbjct: 38 LSESGIERTFDIQALTLPLALRGEDVIGQARTGTGKTLGFGVPLLQRLVT--------PG 89
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P LV++PTREL QV +D G +G+ +YGG PY +Q L+ G+DVVIG
Sbjct: 90 DG-TPQALVVVPTRELCLQVSQDLAEAGKYLGVRITSIYGGRPYESQIQSLRSGVDVVIG 148
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ N+ L + VLDEADEML +GF+ D+E IL V + QT+LFSAT
Sbjct: 149 TPGRLLDLAEQRNLVLGKISTLVLDEADEMLDLGFLPDIERILRMVPEDR--QTMLFSAT 206
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ FL+ I E V S + ++I +++
Sbjct: 207 MPGPILTLARTFLRQPTH-IRAEAGETGAIHERTTQFVYRAHSLDKPELIAKVLQAEGR- 264
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IFT TK +A ++AD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 265 GLTMIFTRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDILVATDVA 324
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEEL 479
ARG+D+ V +I + P D + Y+HR GRTGRAG IT V +P +K ++EL
Sbjct: 325 ARGIDVEGVTHVINYQMPEDEKTYVHRIGRTGRAG-RTGVAITLVDWDEVPRWKLISDEL 383
>gi|299117107|emb|CBN73878.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 467
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/339 (38%), Positives = 206/339 (60%), Gaps = 14/339 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
LRE LK +G PIQ+ + M L G D+VG + TG GKTLAF+LP + + P
Sbjct: 73 LREVLK-QGFPKPTPIQSQGWPMALLGRDMVGISATGSGKTLAFLLPAMIHINAQPYLEQ 131
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
G P VLV+ PTRELA Q+ E+ D +GG+ + + C+YGG P +Q + L +G++
Sbjct: 132 -----GDGPIVLVVAPTRELAVQIKEECDKFGGSSDIKNTCVYGGVPKRSQVYDLSRGVE 186
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+VI TPGR+ D +E G +L + + VLDEAD ML MGF + I+ ++ QTL+
Sbjct: 187 IVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRSIVSQIRPDR--QTLM 244
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
+SAT P V+ ++ FL++ + VG+ ++ A+ +++ +V + +V+ ++
Sbjct: 245 WSATWPKEVEGLARDFLRNYYQVT--VGSLELSANKDIQQVVEIVEDFGKYRVLAKHLQE 302
Query: 360 YSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+++ GR +IF ETK+ L L A A+HGD QS+R+ L F+ G+ + LVA
Sbjct: 303 HNNAGRVLIFVETKKGCDALTRSLRHEGWPALAIHGDKNQSERDRVLHDFKEGRSLILVA 362
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
T+VAARGLD+ D++++I + P+++E+Y+HR GR GRAG
Sbjct: 363 TDVAARGLDVKDIRMVINFDFPKEMESYVHRIGRCGRAG 401
>gi|315445551|ref|YP_004078430.1| DEAD/DEAH box helicase [Mycobacterium gilvum Spyr1]
gi|315263854|gb|ADU00596.1| DNA/RNA helicase, superfamily II [Mycobacterium gilvum Spyr1]
Length = 505
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 145/362 (40%), Positives = 207/362 (57%), Gaps = 22/362 (6%)
Query: 105 SEHPNAV-SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+ HPN ++ + + L GIE F IQ +T + L G DL+G+ARTG GKT AF
Sbjct: 5 TTHPNPTFAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAF 64
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED------FDVYGGAVGLT 217
+P+L +T + TG RA LV++PTREL QV+ED + + LT
Sbjct: 65 GVPLLHRITTDTER--PLTGIPRA---LVVVPTRELCIQVYEDLVHASKYLMADDTRKLT 119
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+YGG PY Q L+KG+DVV+GTPGR+ D ++G++ L L VLDEADEML +G
Sbjct: 120 VTAIYGGRPYEPQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLG 179
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F+ D+E IL ++ K Q +LFSAT+P + ++ F+ + I G +
Sbjct: 180 FLPDIERILKQI--PAKRQAMLFSATMPDPIITLARTFM-TQPTHIRAEGVQGSATHDTT 236
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGD 392
+ + +++ I++ G T+IFT TK +A ++AD L G R A+HGD
Sbjct: 237 EQFAYRAHALDKVEMVARILQAEGRGA-TMIFTRTKRTAQKVADEL-GERGFRVGAVHGD 294
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ QS RE L GFR+G LVAT+VAARG+DI+D+ +I + P D +AY+HR GRTGR
Sbjct: 295 LGQSAREKALKGFRNGDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGR 354
Query: 453 AG 454
AG
Sbjct: 355 AG 356
>gi|145225254|ref|YP_001135932.1| DEAD/DEAH box helicase [Mycobacterium gilvum PYR-GCK]
gi|145217740|gb|ABP47144.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
PYR-GCK]
Length = 505
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 145/362 (40%), Positives = 207/362 (57%), Gaps = 22/362 (6%)
Query: 105 SEHPNAV-SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+ HPN ++ + + L GIE F IQ +T + L G DL+G+ARTG GKT AF
Sbjct: 5 TTHPNPTFAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAF 64
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED------FDVYGGAVGLT 217
+P+L +T + TG RA LV++PTREL QV+ED + + LT
Sbjct: 65 GVPLLHRITTDTER--PLTGIPRA---LVVVPTRELCIQVYEDLVHASKYLMADDTRKLT 119
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+YGG PY Q L+KG+DVV+GTPGR+ D ++G++ L L VLDEADEML +G
Sbjct: 120 VTAIYGGRPYEPQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLG 179
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F+ D+E IL ++ K Q +LFSAT+P + ++ F+ + I G +
Sbjct: 180 FLPDIERILKQI--PAKRQAMLFSATMPDPIITLARTFM-TQPTHIRAEGVQGSATHDTT 236
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGD 392
+ + +++ I++ G T+IFT TK +A ++AD L G R A+HGD
Sbjct: 237 EQFAYRAHALDKVEMVARILQAEGRGA-TMIFTRTKRTAQKVADEL-GERGFRVGAVHGD 294
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ QS RE L GFR+G LVAT+VAARG+DI+D+ +I + P D +AY+HR GRTGR
Sbjct: 295 LGQSAREKALKGFRNGDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGR 354
Query: 453 AG 454
AG
Sbjct: 355 AG 356
>gi|443672055|ref|ZP_21137151.1| putative DEAD/DEAH box helicase [Rhodococcus sp. AW25M09]
gi|443415418|emb|CCQ15489.1| putative DEAD/DEAH box helicase [Rhodococcus sp. AW25M09]
Length = 600
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 198/336 (58%), Gaps = 21/336 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G ES PIQA T ++ G+D+VG A+TG GKT AF +PIL L S+
Sbjct: 51 LRDVGYESPSPIQAATIPPLMAGNDVVGLAQTGTGKTAAFAVPILSRL-----DVSR--- 102
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R P LVL PTRELA QV E F Y + GL +YGG Y Q L+KG +++
Sbjct: 103 --RVPQALVLAPTRELALQVAEAFGKYATHIPGLHILPIYGGQAYGIQLSGLRKGAQIIV 160
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G +DLS L++ VLDEADEML+MGF EDVE IL + +V LFSA
Sbjct: 161 GTPGRVIDHLEKGTLDLSGLEYLVLDEADEMLKMGFQEDVERILSDTPEYKQVA--LFSA 218
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ IS ++L +++ K + N+ + + + + + I
Sbjct: 219 TMPAAIRKISKQYLHD---PVEITVKTKTSTAPNITQRYVQVAHQRKLEALTRIFEVEEF 275
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
I+F TK++ +LA+ L A A++GDI Q+QRE T+ ++G+ LVAT+V
Sbjct: 276 EA-MIMFVRTKQATEELAEKLRARGFSAAAINGDIVQAQRERTIGQLKNGQIDILVATDV 334
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARGLD++ + +I + P D E+Y+HR GRTGRAG
Sbjct: 335 AARGLDVDRISHVINYDIPHDTESYVHRIGRTGRAG 370
>gi|148657801|ref|YP_001278006.1| DEAD/DEAH box helicase [Roseiflexus sp. RS-1]
gi|148569911|gb|ABQ92056.1| DEAD/DEAH box helicase domain protein [Roseiflexus sp. RS-1]
Length = 467
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/345 (38%), Positives = 203/345 (58%), Gaps = 20/345 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
FR + ++ G + PIQ LDG D++G A+TG GKT AFVLPIL+ L
Sbjct: 6 FRFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPILQRLMR 65
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
GP G RA +++ PTRELA+Q+ + G GL S LYGG Y Q +
Sbjct: 66 GPR------GRVRA---MIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQGQIQR 116
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L++G+++ + PGR+ DH+ERG + L L +LDEAD+M MGF+ DV IL ++ A
Sbjct: 117 LRRGVEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRIL-RLAPAQ 175
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
+ QT+LFSAT+P ++ ++ + L+ + +TI + + + V H + P + ++ ++
Sbjct: 176 R-QTMLFSATMPDAIRALAREALR-EPQTIQI---GRSAPVSTVTHAIYPVAEHLKTALL 230
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
+++R ++ G +IFT TK A L+D L A AL G++ Q++R+ L GFRSG+
Sbjct: 231 IELLR-HTDTGSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGR 289
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ LVAT++AARG+D+ + +I + P+ EAY HR GRTGRA
Sbjct: 290 YQILVATDIAARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAA 334
>gi|194477246|ref|YP_002049425.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
gi|171192253|gb|ACB43215.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
Length = 631
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 204/346 (58%), Gaps = 21/346 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F ++ + + + KG + PIQA ++ G DLVG+A+TG GKT AF LP+L +
Sbjct: 66 FGLNAEILQAVTEKGYKQPSPIQAAAIPELMLGRDLVGQAQTGTGKTAAFALPLLARM-- 123
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEF 232
P + R+P VLVL PTRELA QV + F Y + + +YGGA + Q
Sbjct: 124 DPDQ--------RSPQVLVLAPTRELAVQVADSFSTYAAHLPHIRVLPVYGGADFRDQIN 175
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+LK+GI VV+GTPGR+ DH+ +G +DLS L+ VLDEADEMLRMGF++DVE I+ ++
Sbjct: 176 RLKRGIQVVVGTPGRVMDHMRQGTLDLSGLRVLVLDEADEMLRMGFIDDVEWIIEQL--P 233
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ Q +LFSAT+P+ ++ IS +L + ++ +K ++ +R L + + +
Sbjct: 234 KQRQVVLFSATMPTEIRRISLNYLNNPA---EITIRQKGSDASRIRQRYLMVHAPHKLEA 290
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ ++ + G IIF TK +A+ L L+GD+ QSQRE T+ R G
Sbjct: 291 LNRVLEAETGEG-VIIFGRTKAITVTIAESLELTGHDVAVLNGDVAQSQRERTIERLRKG 349
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD++ V L+I + P D EAY+HR GRTGRAG
Sbjct: 350 SINILVATDVAARGLDVDRVSLVINYDIPFDSEAYVHRIGRTGRAG 395
>gi|145219994|ref|YP_001130703.1| DEAD/DEAH box helicase [Chlorobium phaeovibrioides DSM 265]
gi|145206158|gb|ABP37201.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeovibrioides DSM
265]
Length = 598
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/352 (40%), Positives = 204/352 (57%), Gaps = 22/352 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ L G E+ PIQA T ++++G D++G+A+TG GKT AF LPIL ++ T+
Sbjct: 20 PVLRALADVGYETPTPIQARTIPLLIEGRDVLGQAQTGTGKTAAFALPILSNIDFSATE- 78
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
P VLVL PTRELA QV E F Y + G +YGG Y +Q LK+G
Sbjct: 79 ---------PQVLVLAPTRELAIQVAEAFHKYAEHLKGFHVLPIYGGQEYGSQLRMLKRG 129
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+ VV+GTPGR+ DH+ +G+++L SLK VLDEADEMLRMGF++DVE IL + +V
Sbjct: 130 VHVVVGTPGRVMDHMRKGSLNLHSLKCLVLDEADEMLRMGFIDDVEWILEQTPSDRQVA- 188
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P+ ++ I+ K+L +D + + K +R S + ++ I+
Sbjct: 189 -LFSATMPAPIRRIAQKYL-NDPAEVTI--QAKTTTVDTIRQRYWIVGGSHKIDILTRIL 244
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G IIF TK ++A+ L A AL+GD+ Q QRE T+ +SG +
Sbjct: 245 EVEPFDG-MIIFVRTKTMTLEIAEKLQARGYSAAALNGDMVQQQRERTIDQLKSGALNIV 303
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS 465
+AT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG + E I VS
Sbjct: 304 IATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAG-RSGEAILFVS 354
>gi|89900953|ref|YP_523424.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
gi|89345690|gb|ABD69893.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
Length = 574
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/339 (41%), Positives = 199/339 (58%), Gaps = 18/339 (5%)
Query: 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG- 185
+G E+ PIQA VLDG DL+G A+TG GKT AFVLP+L L+ +K G G
Sbjct: 19 QGYETPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFVLPMLHKLSQSEAARNKFGGIGI 78
Query: 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
RA LVL PTRELA QV E YG V LTS ++GG + Q ++KKG+D+++ TP
Sbjct: 79 RA---LVLTPTRELAAQVEESVQTYGKYVELTSTVIFGGVGMNPQISRVKKGVDILVATP 135
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305
GR+ D +++G +DLS ++ VLDEAD ML MGF+ DV+ +L V Q+LLFSAT
Sbjct: 136 GRLLDLLQQGVLDLSQVQILVLDEADRMLDMGFIHDVKKVLAVVPKDK--QSLLFSATFS 193
Query: 306 SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII--RCYSSG 363
++ ++ LKS N ++ T + H P + ++ I+ R +S
Sbjct: 194 EEIRELAATLLKSPLTIQVTPRNTTVQRITQLIH---PVGRGKKKALLAHIVQERNWS-- 248
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
+ ++FT TK A+ +A+ L A ALHG+ Q+ R LAGF+SG LVAT++A
Sbjct: 249 -QVLVFTRTKFGANNVAEFLTKSGINAMALHGNKSQAARTQALAGFKSGDIRALVATDIA 307
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458
ARG+DI+D+ ++ + P E Y+HR GRTGRAG + A
Sbjct: 308 ARGIDIDDLPHVVNYDIPNVCEDYVHRIGRTGRAGADGA 346
>gi|410615743|ref|ZP_11326756.1| ATP-dependent RNA helicase DeaD [Glaciecola psychrophila 170]
gi|410164699|dbj|GAC40645.1| ATP-dependent RNA helicase DeaD [Glaciecola psychrophila 170]
Length = 585
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/342 (41%), Positives = 199/342 (58%), Gaps = 21/342 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + L G E PIQA +++ G DL+G A+TG GKT AF LP+L ++ P S
Sbjct: 19 LLQALDKVGYEKPTPIQAECIPLIIGGHDLLGTAQTGTGKTAAFALPMLANI--DPDDKS 76
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
+ +LVL PTRELA QV E F VY + + +YGG+ Y Q +LK+G
Sbjct: 77 TQ--------LLVLTPTRELAIQVAEAFQVYASFLKKINVLPIYGGSSYDNQIRQLKRGT 128
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DHI++G + L LKF VLDEADEMLRMGF++DVE ILG + QT
Sbjct: 129 QVVVGTPGRVIDHIKKGTLKLDKLKFLVLDEADEMLRMGFIDDVEWILGHA--PKERQTA 186
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P ++ I+ ++L +D K++ + K+ ++ +R + + + + I+
Sbjct: 187 LFSATMPDAIRKITKRYL-NDPKSVKI--ESKVATASTIRQRYCQVAGHHKLEALTRILE 243
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G IIF TK + +LA+ L L+GDI Q+ RE T+ + GK LV
Sbjct: 244 VEVFDG-VIIFVRTKTATMELAEKLSARGYAVEPLNGDIPQNSRERTVDRLKKGKIDILV 302
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
AT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG E
Sbjct: 303 ATDVVARGLDVERVSHVINFDVPYDTESYVHRIGRTGRAGRE 344
>gi|189347343|ref|YP_001943872.1| DEAD/DEAH box helicase [Chlorobium limicola DSM 245]
gi|189341490|gb|ACD90893.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
Length = 610
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 152/376 (40%), Positives = 219/376 (58%), Gaps = 24/376 (6%)
Query: 97 VEEQERGESEHPNAV--SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRAR 154
++E++ E P+ + S ++ PL L+ G E PIQA T ++L+G D++G+A+
Sbjct: 10 LQEKDSMIEEQPSILNFSNLELAEPLLRALEEVGYEKPTPIQAQTIPLLLEGRDVLGQAQ 69
Query: 155 TGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV 214
TG GKT AF LP+L ++ T+ P LVL PTRELA QV E F Y +
Sbjct: 70 TGTGKTAAFALPVLSNIVLSKTE----------PQALVLTPTRELAIQVAEAFHRYAEYL 119
Query: 215 -GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
G +YGG Y Q LK+G+ VV+GTPGR+ DH+ RG++ LSSL+ VLDEADEM
Sbjct: 120 KGFHVVPIYGGQDYGTQLRMLKRGVHVVVGTPGRVMDHMRRGSLSLSSLQCLVLDEADEM 179
Query: 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
LRMGF++DVE IL + ++ +V LFSAT+P+ ++ I+ K LKS + I + N+
Sbjct: 180 LRMGFIDDVEWILDQTPESRQVA--LFSATMPAPIRRIAQKHLKSPAEVI--IQNKTTTV 235
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARAL 389
T +R S + V+ I+ G +IF TK +LA+ L A AL
Sbjct: 236 ET-IRQRYWIVGGSHKLDVLTRILEFEPFDG-ILIFVRTKTMTLELAEKLQARGYAASAL 293
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
+GD+ Q+QRE T+ + G ++AT+VAARGLD++ + +I + P D E+Y+HR GR
Sbjct: 294 NGDMAQNQRERTVDQLKDGSLSIVIATDVAARGLDVDRISHVINYDIPSDTESYVHRIGR 353
Query: 450 TGRAGVEAAETITQVS 465
TGRAG + E I VS
Sbjct: 354 TGRAG-RSGEAILFVS 368
>gi|410639150|ref|ZP_11349703.1| ATP-dependent RNA helicase DeaD [Glaciecola lipolytica E3]
gi|410141678|dbj|GAC16908.1| ATP-dependent RNA helicase DeaD [Glaciecola lipolytica E3]
Length = 575
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/340 (41%), Positives = 199/340 (58%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + ++ G E PIQA + ++L G DL+G+A+TG GKT AF LP+L +L
Sbjct: 18 LLQAIEKVGYEKPSPIQAESIPLILQGHDLLGQAQTGTGKTGAFALPMLANL-------D 70
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGI 238
Y + +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G+
Sbjct: 71 IDADYTQ---LLVLAPTRELAIQVAEAFQVYASFSKKIRVLPIYGGQSYDNQIRQLKRGV 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DHI+RG + L L+F VLDEADEMLRMGF++DVE IL + QT
Sbjct: 128 QVVVGTPGRVIDHIKRGTLKLDKLRFLVLDEADEMLRMGFIDDVEWILSHAPETR--QTA 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P+ +K I+ ++L ++ K + + K+ ++ +R + + + + I+
Sbjct: 186 LFSATMPAPIKKITERYL-NNPKHVKIAS--KVSTASTIRQRFCQVAGHHKLEALTRIME 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G IIF TK + +LAD L L+GDI Q+ RE T+ + GK LV
Sbjct: 243 VEEFDG-VIIFVRTKTATVELADKLSARGYDVEPLNGDIAQNARERTVDRLKQGKIDILV 301
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG
Sbjct: 302 ATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAG 341
>gi|227486921|ref|ZP_03917237.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092995|gb|EEI28307.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 455
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/378 (39%), Positives = 215/378 (56%), Gaps = 21/378 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L ++ I F IQA+T + L+G DL+G+ARTG GKTL F +P+L+ + + A
Sbjct: 19 ITDALAAQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLDRIFD---DAD 75
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ G P L+++PTREL QV ED + + +YGG PY QE LK G D
Sbjct: 76 IEELDG-TPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKALKDGTD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+GTPGR+ D RG + L +++ VLDEADEML +GF+ +E I+ + + QT+L
Sbjct: 135 LVVGTPGRLIDLYNRGELRLGTVRILVLDEADEMLDLGFLPAIEKIIAGITAEH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCSSSARSQVIPDII 357
FSAT+P + ++ F+ K + + +A TN + +V + VI ++
Sbjct: 193 FSATMPDAILGLARGFMN---KPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVISRVL 249
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G RTIIF TK SA+++A L GA ++HGD+ QS RE +L GFR G L
Sbjct: 250 QARGRG-RTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVDIL 308
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFK 473
VAT+VAARG+DI+DV +I + P D Y+HR GRTGRAG +T V +P +K
Sbjct: 309 VATDVAARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAG-HTGTAVTLVGYDELPKWK 367
Query: 474 SAAEELLNNSGLSAAELL 491
+EL GL ELL
Sbjct: 368 LINDEL----GLGKDELL 381
>gi|372269187|ref|ZP_09505235.1| DEAD/DEAH box helicase [Alteromonas sp. S89]
Length = 614
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/334 (42%), Positives = 195/334 (58%), Gaps = 21/334 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L+G D++G+A+TG GKT AF LP+L SL SK+
Sbjct: 27 GYETPSPIQAQTIPSLLEGRDVLGQAQTGTGKTAAFALPLLASLD----LKSKR------ 76
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E Y + G +YGGA Y Q +LK+G+ +V+GTPG
Sbjct: 77 PQALVLAPTRELAIQVAEACQSYAANLKGFHVAPIYGGADYRGQIQQLKRGVQLVVGTPG 136
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ +G +DLS+LK VLDEADEMLRMGF++DVE +L ++ + Q LFSAT+P
Sbjct: 137 RVMDHMRKGTLDLSNLKTLVLDEADEMLRMGFIDDVEWVLEQIPEER--QIALFSATMPR 194
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ I+ L + +D+ K + + +R P + + I+ T
Sbjct: 195 EIAKIARDHLDN---PVDVKIKVKTETAETIRQRYWPVGGLHKLDALTRILEAEPVDA-T 250
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LAD L + AL+GD+ Q+ RE + ++GK +VAT+VAARG
Sbjct: 251 IIFVRTKNTTVELADKLAARGFASAALNGDMAQNLREQVIDKLKAGKLDIVVATDVAARG 310
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
LD+ + +I + P D EAYIHR GRTGRAG E
Sbjct: 311 LDVKRISHVINYDIPYDTEAYIHRIGRTGRAGRE 344
>gi|384100045|ref|ZP_10001112.1| cold-shock DEAD-box protein [Rhodococcus imtechensis RKJ300]
gi|419961081|ref|ZP_14477090.1| cold-shock DEAD-box protein [Rhodococcus opacus M213]
gi|432350077|ref|ZP_19593489.1| cold-shock DEAD-box protein [Rhodococcus wratislaviensis IFP 2016]
gi|383842423|gb|EID81690.1| cold-shock DEAD-box protein [Rhodococcus imtechensis RKJ300]
gi|414573402|gb|EKT84086.1| cold-shock DEAD-box protein [Rhodococcus opacus M213]
gi|430770587|gb|ELB86530.1| cold-shock DEAD-box protein [Rhodococcus wratislaviensis IFP 2016]
Length = 586
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 194/336 (57%), Gaps = 21/336 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L G+D+VG A+TG GKT AF +PIL SK
Sbjct: 26 LSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPIL----------SKIDL 75
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
++P LVL PTRELA QV E F Y + GL +YGG Y Q L++G VV+
Sbjct: 76 TQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGAHVVV 135
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G +DLS L + VLDEADEML+MGF EDVE IL + +V LFSA
Sbjct: 136 GTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILADTPEYKQVA--LFSA 193
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ IS +++ +++ K ++N+ + + + + ++
Sbjct: 194 TMPGAIRKISKQYMHD---PVEITMKSKTSTASNISQRYVQVAHQRKLDALTRVLEVEDF 250
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ LA+ L A A++GDI Q+QRE T+ +SG LVAT+V
Sbjct: 251 EA-MIIFVRTKQATEDLAERLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVATDV 309
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 310 AARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 345
>gi|221133986|ref|ZP_03560291.1| ATP-dependent RNA helicase [Glaciecola sp. HTCC2999]
Length = 622
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/338 (41%), Positives = 197/338 (58%), Gaps = 21/338 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L+ G E+ PIQA + ++L+G DL+G+A+TG GKT AF LP+L ++ +
Sbjct: 20 QALEKVGYETPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANIDVEES----- 74
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
P +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G+ V
Sbjct: 75 -----FPQLLVLAPTRELAIQVAEAFQVYASFSKKIRVLPIYGGQSYDNQIRQLKRGVQV 129
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DHI+R + L LKF VLDEADEMLRMGF++DVELIL + QT LF
Sbjct: 130 VVGTPGRVIDHIQRKTLKLDRLKFLVLDEADEMLRMGFIDDVELILS--HSPKEKQTALF 187
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P +K I+ ++L + K + + K+ ++ +R + + + + I+
Sbjct: 188 SATMPGPIKKITERYL-HEPKHVKIAS--KVSTASTIRQRYCQVAGHHKLEALTRILEVE 244
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G I+F TK + +LAD L L+GDI Q RE T+ +SG L+AT
Sbjct: 245 QFDG-VIVFVRTKTATLELADKLSARGYDVEPLNGDIPQKSRERTVERLKSGSIDILIAT 303
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+V ARGLD+ V +I + P D E+Y+HR GRTGRAG
Sbjct: 304 DVVARGLDVERVSHVINFDIPYDTESYVHRIGRTGRAG 341
>gi|119502760|ref|ZP_01624845.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
gi|119461106|gb|EAW42196.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
Length = 582
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 208/351 (59%), Gaps = 24/351 (6%)
Query: 112 SRFR-ISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
SRF + +P L+E L+S G E+ PIQA T ++L+G D+VG A+TG GKT AF LPIL
Sbjct: 9 SRFNSLGLPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPIL 68
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPY 227
N K R+P LVL PTRELA+QV E F YG G GL ++GGA
Sbjct: 69 ---ANIDVKV-------RSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADM 118
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q L++G +V+ TPGR+ DHIER +IDL+ + VLDEADEMLRMGF++DV+ IL
Sbjct: 119 RQQLKSLREGTHIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILA 178
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
K KV LFSAT+P V+ I+ K L S+ I + + N+ +
Sbjct: 179 KTPKERKVA--LFSATMPKRVRDIANKHL-SNPAEISVAA--AATTNENIEQCYWLAKGA 233
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL--PGARA--LHGDIQQSQREVTLA 403
++ + + ++ + G I+FT T+ES + +A+ L G +A L+GD+ Q R T++
Sbjct: 234 SKLEALKRLLAFEDTEG-VIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVS 292
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+SG LVAT+VAARGLD+ + +I + P D EAY+HR GRTGRAG
Sbjct: 293 DLKSGALDVLVATDVAARGLDVERITHVINYDVPFDEEAYVHRIGRTGRAG 343
>gi|433458404|ref|ZP_20416331.1| DNA/RNA helicase [Arthrobacter crystallopoietes BAB-32]
gi|432193378|gb|ELK50115.1| DNA/RNA helicase [Arthrobacter crystallopoietes BAB-32]
Length = 559
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 207/365 (56%), Gaps = 7/365 (1%)
Query: 94 EAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
EA + ER + F + + L GI FPIQAMT + L G D++G+A
Sbjct: 26 EATLASDERPHELPQQTFADFDVRADIVRSLFDAGITHPFPIQAMTLPVALSGHDIIGQA 85
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213
+TG GKTL F +P L+ + + K AP LV++PTRELA QV +D
Sbjct: 86 KTGTGKTLGFGIPALQRVIGPSDEGFDKLPAPGAPQALVVVPTRELAVQVAQDLKTASKH 145
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
+ +YGG Y Q +L KG++VV+GTPGR+ D + +++L +++ VLDEADEM
Sbjct: 146 RDVRVSTIYGGRAYEPQIEELGKGVEVVVGTPGRLIDLHRQRHLNLKNVRIVVLDEADEM 205
Query: 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
L +GF+ DVE +LG QT+LFSAT+P V ++ +++ +++
Sbjct: 206 LDLGFLPDVETLLGATPAVR--QTMLFSATMPGPVVAMARRYMTQPTHIRAADPDDEGMT 263
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARAL 389
++R ++ + + +V+ I++ GRTIIFT+TK +A++L++ L A A+
Sbjct: 264 KKDIRQVIYRAHALDKDEVVARILQAEGR-GRTIIFTKTKRTAAKLSEELVDRGFAAAAI 322
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGD+ Q RE L FR+ K LVAT+VAARG+D++DV +I + P D + Y+HR GR
Sbjct: 323 HGDLGQGAREQALRAFRNEKVDVLVATDVAARGIDVDDVTHVINFQCPEDEKTYLHRVGR 382
Query: 450 TGRAG 454
TGRAG
Sbjct: 383 TGRAG 387
>gi|78189083|ref|YP_379421.1| DEAD/DEAH box helicase-like protein [Chlorobium chlorochromatii
CaD3]
gi|78171282|gb|ABB28378.1| ATP-dependent RNA helicase CsdA [Chlorobium chlorochromatii CaD3]
Length = 640
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/358 (40%), Positives = 203/358 (56%), Gaps = 23/358 (6%)
Query: 104 ESEHPNAVSRFRISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
E + P + F + +P L + L+ G ES PIQA T +L G D++G+A+TG GKT
Sbjct: 3 EQQLPLENNFFSLQLPELLMKALEEVGYESPTPIQAQTIPFLLAGRDVLGQAQTGTGKTA 62
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCC 220
AF LPIL S+ + P LVL PTRELA QV E F Y + G
Sbjct: 63 AFALPILASIDIQQAE----------PQALVLAPTRELAIQVAEAFQRYAEYLKGFHVVP 112
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG Y Q L++G+ VV+GTPGR+ DHI RG+++L+ LK VLDEADEMLRMGF++
Sbjct: 113 IYGGQDYGIQFRMLRRGVQVVVGTPGRVMDHIRRGSLNLTHLKTLVLDEADEMLRMGFID 172
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVE IL + +V LFSAT+P ++ I+ K+L + ++ K +R
Sbjct: 173 DVEWILEQTPAGRQVA--LFSATMPPPIRRIAQKYL---DQPAEVTIQTKTTTVDTIRQR 227
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQS 396
S + ++ I+ G IIF+ TK +LA+ L A AL+GD+ Q+
Sbjct: 228 YWVVGGSHKLDILTRILEVEPFDG-MIIFSRTKTMTIELAEKLQARGYAAAALNGDMPQN 286
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
QRE T+ ++G +VAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 287 QRERTIEQLKNGNINIVVATDVAARGLDVERISHVVNYDIPSDTESYVHRIGRTGRAG 344
>gi|111023001|ref|YP_705973.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
gi|397736421|ref|ZP_10503103.1| cold-shock DEAD box protein A [Rhodococcus sp. JVH1]
gi|110822531|gb|ABG97815.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
gi|396927611|gb|EJI94838.1| cold-shock DEAD box protein A [Rhodococcus sp. JVH1]
Length = 586
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 194/336 (57%), Gaps = 21/336 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L G+D+VG A+TG GKT AF +PIL SK
Sbjct: 26 LSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPIL----------SKIDL 75
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
++P LVL PTRELA QV E F Y + GL +YGG Y Q L++G VV+
Sbjct: 76 TQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGAHVVV 135
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G +DLS L + VLDEADEML+MGF EDVE IL + +V LFSA
Sbjct: 136 GTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILADTPEYKQVA--LFSA 193
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ IS +++ +++ K ++N+ + + + + ++
Sbjct: 194 TMPGAIRKISKQYMHD---PVEITMKSKTSTASNISQRYVQVAHQRKLDALTRVLEVEDF 250
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ LA+ L A A++GDI Q+QRE T+ +SG LVAT+V
Sbjct: 251 EA-MIIFVRTKQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVATDV 309
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 310 AARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 345
>gi|410697698|gb|AFV76766.1| DNA/RNA helicase, superfamily II [Thermus oshimai JL-2]
Length = 508
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/339 (43%), Positives = 199/339 (58%), Gaps = 22/339 (6%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
+ F + + E LK+KGI + PIQA + LDG DL+G+ARTG GKTLAF LPI E L
Sbjct: 4 ANFPLKPEILEALKAKGIFAPTPIQAAALPIALDGRDLIGQARTGTGKTLAFALPIAERL 63
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ GR P LVL PTRELA QV E+ V A L +YGG Y Q+
Sbjct: 64 APSSER-------GRPPRALVLTPTRELALQVAEE--VASVAPHLKVVAVYGGTGYGKQK 114
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L +G DVV+ TPGR D++E+G +DLS ++ VLDEADEML MGF E+VE +L
Sbjct: 115 EALARGADVVVATPGRALDYLEQGVLDLSRVEIAVLDEADEMLSMGFEEEVERLLSAT-- 172
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
+ QTLLFSATLPSW + +S +++++ I++V E + I+ P R
Sbjct: 173 PKERQTLLFSATLPSWARKLSERYMRA-PVLINVVREEGVTYQEEA--ILAPTD---RLG 226
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLAD-LLPG---ARALHGDIQQSQREVTLAGFRS 407
++ D++ + R I+FT TK ++A LL ARA+HGD+ QS RE L FR
Sbjct: 227 LLSDLL-FVKAPKRAIVFTSTKRETEEVAAGLLQAGHPARAIHGDLSQSDRERVLKAFRE 285
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
G+ LVAT+VAARGLDI +V L++ P+ EAY HR
Sbjct: 286 GEVRVLVATDVAARGLDIPEVDLVVHYRLPQSPEAYQHR 324
>gi|372270358|ref|ZP_09506406.1| DEAD/DEAH box helicase [Marinobacterium stanieri S30]
Length = 576
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/347 (40%), Positives = 199/347 (57%), Gaps = 23/347 (6%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E+ PIQA + +L+G DL+G A+TG GKT AF LP+L+ +
Sbjct: 16 LSTPILNALADVGYETPSPIQARSIPPLLEGQDLLGMAQTGTGKTAAFALPLLQRIDTTA 75
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
T P +LVL PTRELA QV + Y + GL + +YGG Y +Q L
Sbjct: 76 TH----------PQLLVLAPTRELALQVATACEKYSKHLPGLRTLSIYGGQGYDSQIRGL 125
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G V+IGTPGR+ DHI RG + L L+ VLDEADEMLRMGF++DVE IL +
Sbjct: 126 RRGAQVIIGTPGRVMDHIRRGTLQLDRLQSLVLDEADEMLRMGFIDDVEWILQHT--PAQ 183
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P ++HI+ +L+ + + + + AST +R +++Q +
Sbjct: 184 RQIALFSATMPQAIRHIAENYLQ--EPAVIKIKAQTATAST-IRQRTWTVRGMSKTQALT 240
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLL-----PGARALHGDIQQSQREVTLAGFRSGK 409
I+ + ++F TK + LA+ L P A ALHGDI Q+QRE ++ + G+
Sbjct: 241 RILELHEHEA-ALVFVRTKTATESLAEELNQAGFPAA-ALHGDIAQAQRERIVSKLKKGE 298
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
++AT+V ARGLD+ + +I + P D E+YIHR GRTGRAG E
Sbjct: 299 LDVVIATDVVARGLDVERISHVINYDIPYDTESYIHRIGRTGRAGRE 345
>gi|359774481|ref|ZP_09277848.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia effusa NBRC
100432]
gi|359308367|dbj|GAB20626.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia effusa NBRC
100432]
Length = 574
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 135/340 (39%), Positives = 197/340 (57%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R+ L G E+ PIQA T ++ G+D+VG A+TG GKT AF +PIL L +
Sbjct: 18 VRQALDDVGYETPSPIQAATIPPLMAGNDVVGLAQTGTGKTAAFAIPILSRLDSS----- 72
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGI 238
R P LVL PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 73 -----ARKPQALVLAPTRELALQVSEAFGKYSSHMPDVRVLPIYGGQSYTVQLSGLRRGA 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+++G +D+S L+F VLDEADEML MGF EDVE IL D+ +V
Sbjct: 128 QVIVGTPGRVIDHLDKGTLDISQLEFLVLDEADEMLTMGFAEDVERILSDTPDSKQVA-- 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ K+LK+ ++ K + N+ L S + + ++
Sbjct: 186 LFSATMPKAIGRLAKKYLKN---PTEVAVESKTATAQNITQKYLQVSHQRKLDALTRVLE 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ G I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++ LV
Sbjct: 243 VETFDG-MIVFVRTKQATEELAERLRARGFSAVAINGDLAQAQRERTINQLKNSTIDILV 301
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 302 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 341
>gi|227505531|ref|ZP_03935580.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
gi|227197895|gb|EEI77943.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
Length = 442
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 210/358 (58%), Gaps = 11/358 (3%)
Query: 101 ERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
++ E+ P + ++ + + L S+GI F IQ +T + L G DL+G+ARTG GKT
Sbjct: 4 QQSETTQPPTFAALGVAAEIVDALASRGIVRTFAIQELTLPIALGGQDLIGQARTGMGKT 63
Query: 161 LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220
L F +P+L+ + + A + G P L+++PTRELA QV ED + + L
Sbjct: 64 LGFGVPVLDRVFD---DADIEELDG-TPRALIVVPTRELAVQVGEDLTLASQNLPLRLAT 119
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG PY Q L+KG+DV++GTPGR+ D ++G++ L + VLDEADEML +GF+
Sbjct: 120 IYGGRPYEEQIKLLEKGVDVIVGTPGRLLDLAQQGHLQLDHVAILVLDEADEMLDLGFLP 179
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
D+E IL ++ NK QT+LFSAT+P + ++ F+ G+E + + R +
Sbjct: 180 DIEKIL-ELLHGNKHQTMLFSATMPGPILTLARTFMNRPIHIRAESGDEN-QTHESTRKV 237
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--GAR--ALHGDIQQS 396
+ +I ++ G+TIIF TK SA+++AD L G R A+HGD+ Q+
Sbjct: 238 TFQAHRMDKLAIISRALQAKGR-GKTIIFARTKRSAAEVADELARRGFRVGAVHGDLGQA 296
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RE +L FR GK LVAT+VAARG+D++DV +I + P D ++HR GRTGRAG
Sbjct: 297 AREKSLNAFREGKVEILVATDVAARGIDVDDVTHVINYQVPDDPMTFVHRIGRTGRAG 354
>gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase [Thermodesulfobium narugense DSM 14796]
gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
DSM 14796]
Length = 531
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 192/335 (57%), Gaps = 22/335 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK G E IQ T +V+ G D++G+A+TG GKT AF +PI+E KT
Sbjct: 20 LKEMGFEEPSEIQKQTIPIVMQGFDVIGQAQTGTGKTAAFGIPIVE-----------KTT 68
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
R P LVL PTRELA QV E+ GL +YGG Q LK G V+IG
Sbjct: 69 KDRVPQSLVLTPTRELAIQVAEEISKISKYRGLRVVPIYGGQSIERQIKALKNGAQVIIG 128
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ DHI+RG + LS + VLDEADEML MGF+ED+E I+ +++ N +QTLLFSAT
Sbjct: 129 TPGRLIDHIKRGTLFLSKISILVLDEADEMLDMGFIEDIETIMKSIKNEN-IQTLLFSAT 187
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ K++K+ K + + E++ + C + + + + I+
Sbjct: 188 MPDPIMALTKKYMKNPK--VVSISKEQLTVPLTDQ---FYCEAKDKLEALCRILET-EDM 241
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
+TIIF TK+ +L L A LHGD+ Q+QR+ + FR LVAT+VA
Sbjct: 242 DKTIIFCRTKKGVDELVASLNTRGYSAEGLHGDLTQAQRDKVMKSFRERNLEVLVATDVA 301
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
ARGLDI+DV +I + P+D E+Y+HR GRTGRAG
Sbjct: 302 ARGLDISDVSHVINFDIPQDPESYVHRIGRTGRAG 336
>gi|329295922|ref|ZP_08253258.1| ATP-dependent RNA helicase DeaD [Plautia stali symbiont]
Length = 617
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 154/413 (37%), Positives = 227/413 (54%), Gaps = 41/413 (9%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L G PIQA +L G D++G A+TG GKT AF LP+L ++ P+
Sbjct: 19 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNNVD--PSV---- 72
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L++G +
Sbjct: 73 ----RAPQILVLAPTRELAVQVAEAMTEFSKHMRGINVVALYGGQRYDVQLRALRQGPQI 128
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH++RG +DLSSL+ VLDEADEMLRMGF+EDVE I+ ++ + + QT LF
Sbjct: 129 VVGTPGRLLDHLKRGTLDLSSLRGLVLDEADEMLRMGFIEDVETIMAQIPEGH--QTALF 186
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ I+ +F+K ++ +M++S R + +A + ++R
Sbjct: 187 SATMPEAIRRITKRFMKDPQEV-------RMQSSITTRPDISQSYWTAYGRKSDALVRFL 239
Query: 361 SSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G+ L+
Sbjct: 240 EAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 299
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG--------VEAAE-----TI 461
AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG VE E I
Sbjct: 300 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 359
Query: 462 TQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLE 514
+ IP + ELL+ L A+L AK + + R+LL+ ++
Sbjct: 360 ERTMKLTIPEVELPNAELLSQRRL--AQLAAKVQQQLESSDLDQYRALLAKMQ 410
>gi|334563107|ref|ZP_08516098.1| ATP-dependent RNA helicase [Corynebacterium bovis DSM 20582]
Length = 785
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 199/336 (59%), Gaps = 21/336 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
+ S G PIQA T ++++G D+VG A+TG GKT AF LP+L + PT+
Sbjct: 151 VTSVGYTEPSPIQAETIPLLMEGHDVVGLAQTGTGKTAAFALPVLAGI--DPTQ------ 202
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R+ LVL PTRELA QV E F + ++G + +YGG Y Q L++G VV+
Sbjct: 203 --RSTQALVLAPTRELALQVAESFQSFANSLGGVNILPVYGGQAYGVQLSGLRRGAHVVV 260
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ +G++DLS L+F VLDEADEML MGF EDVE ILG D +V LFSA
Sbjct: 261 GTPGRVIDHLAKGSLDLSDLRFMVLDEADEMLNMGFQEDVERILGDTPDGKQVA--LFSA 318
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+PS ++ +S ++L + ++ I + N+ + + N+ L S + + I+
Sbjct: 319 TMPSGIRRLSKQYLNNPRE-ITVKSNQ--RTAENITQDFLMVSHRNKLDALTRILEVTDF 375
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
I+F TK +LA+ L A A++GDI Q+QRE T+ + G+ LVAT+V
Sbjct: 376 EA-MIMFVRTKNETEELAERLCDRGFNAAAINGDIAQAQRERTVDQLKDGRLDILVATDV 434
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARGLD++ + + + P D E+Y+HR GRTGRAG
Sbjct: 435 AARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAG 470
>gi|401623547|gb|EJS41643.1| ded1p [Saccharomyces arboricola H-6]
Length = 620
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/349 (40%), Positives = 201/349 (57%), Gaps = 21/349 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES NGP+
Sbjct: 161 LYENIKLARFTKPTPVQKYSIPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKNGPSPQ 220
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ Y + +C +YGG+P Q ++
Sbjct: 221 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKYTYRSWVKACVVYGGSPIGNQLREI 280
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN- 293
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I VED +
Sbjct: 281 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 337
Query: 294 ----KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
K QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 338 TPVGKRQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 394
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGF 405
+ D++ ++ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 395 KSALLDLLSA-TTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 453
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAG
Sbjct: 454 RSGDATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAG 502
>gi|428183253|gb|EKX52111.1| hypothetical protein GUITHDRAFT_65410, partial [Guillardia theta
CCMP2712]
Length = 442
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/357 (39%), Positives = 205/357 (57%), Gaps = 20/357 (5%)
Query: 108 PNAVSRFR-ISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
P+ FR + VP L+++L G IQA T+ L G D++G A+TG GKTL F+
Sbjct: 60 PDPFFTFRELPVPQVLQDQLLRAGFSGPSVIQAQTWPAALKGRDVIGVAKTGSGKTLGFL 119
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
+P + N K + P +LVL PTRELA Q+ E+ +G + + SCC+YGG
Sbjct: 120 VPGFMHIMNDGLKNPRM-----GPLILVLAPTRELATQIQEECIKFGSCIHIRSCCVYGG 174
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
AP Q +L+ G +VI TPGR+ D +E+G I+L + + V DEAD ML MGF +
Sbjct: 175 APKGPQLRELRSGAHIVIATPGRLNDFLEQGMINLQQVSYLVFDEADRMLDMGFEPQIRK 234
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN-EKMKASTNVRHI--V 341
IL ++ K QTL ++AT P V+ +++ FL DK I +G+ + + A+ +V + V
Sbjct: 235 ILDRI--PGKRQTLFYTATWPKEVRRLASDFL--DKPCIVYIGDTDTLVANKDVTQVIKV 290
Query: 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQ----LADLLPGARALHGDIQQSQ 397
+ + ++ DIIR G R IIF TK Q L+ ++P A A+HGD Q Q
Sbjct: 291 IDDRFGEKDMILQDIIRGEGVGSRIIIFCSTKRMCDQLERNLSRMVPCA-AIHGDKDQGQ 349
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
R L F++G+ ++AT+VAARGLDI +V+ +I E P + E YIHR GRTGRAG
Sbjct: 350 RTRILNDFKAGQCCVMIATDVAARGLDIKEVKAVINYEFPSNTEDYIHRIGRTGRAG 406
>gi|381151975|ref|ZP_09863844.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
gi|380883947|gb|EIC29824.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
Length = 588
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/341 (40%), Positives = 196/341 (57%), Gaps = 21/341 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L+ G E+ PIQA +L G D++G+A+TG GKT AF LPIL
Sbjct: 19 PVLKALEDVGYETPSPIQAQVIPFMLQGKDVLGQAQTGTGKTAAFALPIL---------- 68
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
S+ R P VLVL PTRELA QV E F Y + G +YGG Y +Q L +G
Sbjct: 69 SRIDLKQRDPQVLVLAPTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYSSQLRHLGRG 128
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DH+ RG + L +L VLDEADEMLRMGF++DVE IL + + QT
Sbjct: 129 AHVVVGTPGRVMDHMRRGTLKLENLSTLVLDEADEMLRMGFIDDVEWILEQTPENR--QT 186
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P ++ I+ ++L ++ V ++ N+R S + + I+
Sbjct: 187 ALFSATMPPPIRKIAQEYLTDPEQVTIKVTT---ASAENIRQRYWVVSGLHKLDALTRIL 243
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G IIF TK + +LA+ L A A++GD+ Q+ RE +A +SGK L
Sbjct: 244 EAETFDG-MIIFVRTKTATVELAERLEARGFSAAAINGDMSQALRERAIANLKSGKLDIL 302
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 303 IATDVAARGLDVDRITHVVNYDIPYDTESYVHRIGRTGRAG 343
>gi|410631430|ref|ZP_11342105.1| ATP-dependent RNA helicase DeaD [Glaciecola arctica BSs20135]
gi|410148876|dbj|GAC18972.1| ATP-dependent RNA helicase DeaD [Glaciecola arctica BSs20135]
Length = 585
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/342 (41%), Positives = 200/342 (58%), Gaps = 21/342 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + L G E PIQA ++LDG D++G A+TG GKT AF LP+L ++ P +
Sbjct: 19 LLQALDKVGYEKPTPIQAECIPLILDGHDVLGTAQTGTGKTAAFALPMLANI--DPDDKN 76
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGI 238
+ +LVL PTRELA QV E F VY + + +YGG+ Y Q +L++G
Sbjct: 77 TQ--------LLVLAPTRELAIQVAEAFQVYASFSKKINVLPIYGGSSYDNQIRQLRRGT 128
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DHI++G + L LKF VLDEADEMLRMGF++DV ILG + K QT
Sbjct: 129 QVVVGTPGRVIDHIKKGTLKLDKLKFLVLDEADEMLRMGFIDDVTWILGHAPE--KRQTA 186
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P ++ I+ ++L +D K++ + K+ ++ +R + + + + I+
Sbjct: 187 LFSATMPDPIRKITKRYL-NDPKSVKI--ESKVATASTIRQRYCQVAGHHKLEALTRILE 243
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G IIF TK + +LA+ L L+GDI Q+ RE T+ + GK LV
Sbjct: 244 VEVFDG-VIIFVRTKTATMELAEKLSARGYAVEPLNGDIPQNSRERTVDRLKKGKIDILV 302
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
AT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG E
Sbjct: 303 ATDVVARGLDVERVSHVINFDVPYDTESYVHRIGRTGRAGRE 344
>gi|441515068|ref|ZP_20996877.1| ATP-dependent RNA helicase DeaD [Gordonia amicalis NBRC 100051]
gi|441450162|dbj|GAC54838.1| ATP-dependent RNA helicase DeaD [Gordonia amicalis NBRC 100051]
Length = 589
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 195/340 (57%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T ++DG D+VG A+TG GKT AF +PIL L
Sbjct: 34 VRAAITDVGYETPSPIQAATIPPLMDGRDVVGLAQTGTGKTAAFAIPILSRLDTS----- 88
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
R P L+L PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 89 -----ARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGA 143
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+++ +D+S L+F VLDEADEML MGF EDVE IL + D +V
Sbjct: 144 QVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETPDTKQVA-- 201
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++LKS + ++ K + N+ L S + + +
Sbjct: 202 LFSATMPSSIRRLAQRYLKSPQ---EITVKSKTATAQNITQRYLQVSHQRKLDALTRFLE 258
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G LV
Sbjct: 259 VEEFDA-MIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERTINQLKNGSIDILV 317
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 318 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 357
>gi|336325995|ref|YP_004605961.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
gi|336101977|gb|AEI09797.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
Length = 786
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 152/418 (36%), Positives = 234/418 (55%), Gaps = 32/418 (7%)
Query: 44 SKKKESSKKRKESEIEEEEERSE--TSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQE 101
S+K E+ + +K+ +++ SE S + E +N ++E + K V+ EQ
Sbjct: 60 SEKAENVQDKKQDVNSGQQDHSEPVVESVVDEDMNQPQQEETPAEAKNTVD----AAEQS 115
Query: 102 RGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
G + ++ + E +K G E+ PIQ T ++++G+D+VG A+TG GKT
Sbjct: 116 DGPT-----FDNLGLTSEVLEAVKKVGFEAPSPIQEQTIPVLMEGNDVVGLAQTGTGKTA 170
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCC 220
AF LPIL + P+K R P LVL PTRELA QV E F+ + +G +
Sbjct: 171 AFALPILARI--DPSK--------RHPQALVLAPTRELALQVAESFESFATHLGGIHVLP 220
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG Y Q L++G +V+GTPGR+ DH+ +G++D+S L+F VLDEADEML MGF E
Sbjct: 221 IYGGQAYGIQLSGLRRGAHIVVGTPGRVIDHLNKGSLDISELRFMVLDEADEMLNMGFQE 280
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVE IL + +V LFSAT+P+ ++ +S ++L +D + I + + + S N+
Sbjct: 281 DVERILEDTPEDKQVA--LFSATMPAGIRRLSKQYL-NDPQEITVKSTQ--RTSENIEQD 335
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQS 396
L + + + + I+ I+F TK +LA+ L A A++GDI Q+
Sbjct: 336 YLFVNHRNKLEALTRILEVTEFEA-MIMFVRTKNETEELAERLRARGFNAAAINGDIAQA 394
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
QRE T+ + G+ LVAT+VAARGLD++ + + + P D E+Y+HR GRTGRAG
Sbjct: 395 QRERTVDQLKDGRLDILVATDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAG 452
>gi|389576917|ref|ZP_10166945.1| DNA/RNA helicase, superfamily II [Eubacterium cellulosolvens 6]
gi|389312402|gb|EIM57335.1| DNA/RNA helicase, superfamily II [Eubacterium cellulosolvens 6]
Length = 524
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 192/331 (58%), Gaps = 19/331 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G PIQ T ++L+G DL+ A+TG GKT AF LPILE L NG + +
Sbjct: 20 GYTEATPIQEKTMPVILEGRDLIACAQTGTGKTAAFALPILEKLDNGEVRKLRS------ 73
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
LVL PTRELA Q+ E+F YG + L + C+YGGA Q L++G D+++ T GR
Sbjct: 74 ---LVLTPTRELAVQIFENFKKYGRYLPLRAVCIYGGAKQKPQMEALRRGCDILVATLGR 130
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ D++ G + L ++ VLDEAD ML MGF+ DV I G + QTL+FSAT+P
Sbjct: 131 LMDYMNLGLVSLKGIEIFVLDEADRMLDMGFINDVRKIAGSMNTDR--QTLMFSATMPKE 188
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
++ + + L+ D+ + A+ V + S + +V+ +I++ RTI
Sbjct: 189 IEQLGRELLRD---PADVRVAPQSTAADTVDQKICFVGHSDKLKVLAEILK-QEEVTRTI 244
Query: 368 IFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
IFT TK A ++A L A+A+HGD Q QR+ TL G+++G F LVAT+VA+RGL
Sbjct: 245 IFTRTKHGADRVARNLTRSGIAAKAIHGDKTQGQRQSTLEGYKAGHFHVLVATDVASRGL 304
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
DI +V +I P++ EAYIHR GRTGRAG
Sbjct: 305 DIPEVSHVINFNLPQEPEAYIHRIGRTGRAG 335
>gi|449135622|ref|ZP_21771069.1| cold-shock deAd-box protein a [Rhodopirellula europaea 6C]
gi|448885676|gb|EMB16100.1| cold-shock deAd-box protein a [Rhodopirellula europaea 6C]
Length = 851
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/344 (41%), Positives = 200/344 (58%), Gaps = 25/344 (7%)
Query: 120 LREKLK----SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
LRE+++ + G + PIQA +LDG D++ +++TG GKT AF LPIL
Sbjct: 232 LREEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPIL------- 284
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
S+ R P VLVL PTRELA QV F YG + G +YGG Y Q +L
Sbjct: 285 ---SRVDVRNRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQL 341
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G+ VV+GTPGR+ DH++RG +DL SL VLDEADEML MGF+EDV+ +L K + +
Sbjct: 342 RRGVQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKTPEGRQ 401
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
V LFSATLP ++ I+ ++L +D I + K + +VR L S + +
Sbjct: 402 V--ALFSATLPKPIRKIADEYL-NDPARITI--KSKTITAASVRQRALFVSPRDKIDALT 456
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I+ + G I+FT+TK+S +A+ L A AL+GD+ Q RE T+ + G+
Sbjct: 457 RILEVEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQL 515
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD+ + + + P D E+Y+HR GRTGRAG
Sbjct: 516 DVLVATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAG 559
>gi|296394094|ref|YP_003658978.1| DEAD/DEAH box helicase [Segniliparus rotundus DSM 44985]
gi|296181241|gb|ADG98147.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
44985]
Length = 548
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 148/378 (39%), Positives = 205/378 (54%), Gaps = 24/378 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA T +L+G D+VG A TG GKT AF LP+L S+ R
Sbjct: 28 GYETPSPIQAKTIPALLNGQDVVGLAATGTGKTAAFALPVL----------SRIDPKLRR 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC-CLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV E F Y + S C+YGG Y Q L +G V++GTPG
Sbjct: 78 PQALVLAPTRELALQVAEAFGRYASKLPQVSVVCVYGGGSYPVQLQALARGSQVIVGTPG 137
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG + L LKF VLDEADEML+MGF EDVE +L + Q LFSAT+P
Sbjct: 138 RVVDHLERGTLKLGDLKFLVLDEADEMLKMGFQEDVERVLASA--SQDKQVALFSATMPG 195
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ IS +L+ +++ S N+ + + ++ I+
Sbjct: 196 AIRKISKTYLRD---PVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRILEVEQFSA-M 251
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK++ +A+ L AR L+GDI Q+ RE T++ R+GK LVAT+VAARG
Sbjct: 252 IVFVRTKQATEDIAERLRARGFAARPLNGDIAQAARERTVSALRAGKIDILVATDVAARG 311
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAET--ITQVSDSVIPAFKSAAEELL 480
LD+ + + + P D E+Y+HR GRTGRAG +T S+I A + A + L
Sbjct: 312 LDVERITHVFNYDVPHDTESYVHRIGRTGRAGRAGVSYLFVTPRERSMIGAIERATRQAL 371
Query: 481 NNSGL-SAAELLAKALAK 497
+ L + A++ A +AK
Sbjct: 372 TEAPLPTVADVNAGRIAK 389
>gi|111023319|ref|YP_706291.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
gi|110822849|gb|ABG98133.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
Length = 555
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 198/340 (58%), Gaps = 16/340 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L +++G T + G
Sbjct: 53 LDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRISSGTTGTAALDG 112
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
RA LV++PTREL QV +D + + G L +YGG PY Q L+KG
Sbjct: 113 TPRA---LVIVPTRELCIQVTKDLEGAAKYLKGEKNKLEVLAIYGGRPYETQIATLQKGA 169
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D +G++ L ++ VLDEADEML +GF+ D+E ILG V D K QT+
Sbjct: 170 DVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILGMVPD--KRQTM 227
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ FL ++ +HI + +++++ +++
Sbjct: 228 LFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYR-AHALDKAEMVARVLQ 286
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T+IFT TK +A ++AD L ++HGD+ Q RE L FR+GK LV
Sbjct: 287 AEGRGA-TMIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFRTGKIDVLV 345
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG
Sbjct: 346 ATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAG 385
>gi|119963381|ref|YP_948725.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|119950240|gb|ABM09151.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
Length = 726
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/341 (40%), Positives = 192/341 (56%), Gaps = 25/341 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-----NGPTKA 178
L+ G E PIQA T ++L+G D+VG A+TG GKT AF +P L L NGP++
Sbjct: 86 LQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSRK 145
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKG 237
++ LVL PTRELA QV E F Y + T +YGG+ Y Q L++G
Sbjct: 146 TQ---------ALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRG 196
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DHI +G++DLS L++ VLDEADEMLRMGF +DVE I + + +V
Sbjct: 197 AQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQQTPETRQVA- 255
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P ++ +S ++L + ++ K N + L + + I+
Sbjct: 256 -LFSATMPGQIRRMSKQYLNN---PAEISVKSKTTTGANTKQRYLQVMGPHKLDALTRIL 311
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G I F TK + LAD L A A++GDI Q QRE T+ + G+ L
Sbjct: 312 EVEEFDG-VIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGRIDIL 370
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG
Sbjct: 371 VATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAG 411
>gi|118366889|ref|XP_001016660.1| P68-like protein, putative [Tetrahymena thermophila]
gi|89298427|gb|EAR96415.1| P68-like protein, putative [Tetrahymena thermophila SB210]
Length = 699
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 138/376 (36%), Positives = 206/376 (54%), Gaps = 18/376 (4%)
Query: 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-NGPTKASKKTGYGRAPSV 190
++ + F +VL G DL+G A+TG GKTL+F+LP L + P K G P
Sbjct: 236 MYECSFIPFPIVLSGHDLIGIAQTGSGKTLSFMLPALVHINAQDPVKP------GEGPIA 289
Query: 191 LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKD 250
LVL PTRELA Q+ E +G ++S C+YGGAP QE +L+ G D+VI TPGR+ D
Sbjct: 290 LVLAPTRELANQIQEQCFKFGSKCKISSVCVYGGAPKIYQEKELRNGCDIVIATPGRLID 349
Query: 251 HIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKH 310
+E IDL + + VLDEAD ML MGF + I+G++ QTL+FSAT P V+
Sbjct: 350 FLESNVIDLKRVTYLVLDEADRMLDMGFEPSIRKIVGQIRPDR--QTLMFSATWPQTVRR 407
Query: 311 ISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFT 370
++ F D I +G+ + + ++ V S + + +I+ + +TIIFT
Sbjct: 408 LALDFCHGDPIHIQ-IGDMENNVNNDIDQQVEIIDKSQKYDRVKEILSTMTRSDKTIIFT 466
Query: 371 ETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
+TK+ L+ L +HGD Q R+ + F++G+ TL+AT+VA+RGLD+
Sbjct: 467 QTKKDCDDLSKALQTDNIRNICIHGDKSQRDRDKVMDLFKTGRVNTLIATDVASRGLDVK 526
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAGVE--AAETITQVSDSVIPAFKSAAEELLNNSG 484
D++L+I + P+ +E Y+HR GRTGRAG + A + Q D I K + L N+
Sbjct: 527 DIKLVINYDFPKQIEDYVHRVGRTGRAGAQGKAISFLDQYEDKKIS--KELVDVLKQNNQ 584
Query: 485 LSAAELLAKALAKAVG 500
+ +LL + A G
Sbjct: 585 EISQDLLELSEANYKG 600
>gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium
ammoniagenes DSM 20306]
gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium
ammoniagenes DSM 20306]
Length = 658
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 137/361 (37%), Positives = 208/361 (57%), Gaps = 21/361 (5%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
E + +++P + +++ + G + PIQA T ++++G D+VG A+TG G
Sbjct: 50 EDKNSANDNPQGFGNLGLPDKVQDAVAKVGYTTPSPIQAQTIPILMEGRDVVGLAQTGTG 109
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LT 217
KT AF LP+L S+ R P LVL PTRELA QV + F + +G +
Sbjct: 110 KTAAFALPVL----------SQIDVNARHPQALVLAPTRELALQVADSFQSFADHLGRIE 159
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+YGG Y Q L++G +++GTPGR+ DH+E+G++D+S L+F VLDEADEML MG
Sbjct: 160 VLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMG 219
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F EDVE IL + +V LFSAT+P+ ++ +S K+L S + V +E+ + + N+
Sbjct: 220 FQEDVERILADTPEEKQVA--LFSATMPNSIRRLSKKYLNSPAEVT--VKSEQ-RTNDNI 274
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFT----ETKESASQLADLLPGARALHGDI 393
+ L + A+ I+ I+F ET+E A +L D A A++GDI
Sbjct: 275 KQRFLLTAHRAKLDAFTRILEVTDYDA-MIVFCRTKHETEEVAEKLRDAGYNAAAINGDI 333
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q+QRE T+ + G+ LVAT+VAARGLD++ + ++ + P D E+Y+HR GRTGRA
Sbjct: 334 AQNQRERTVDQLKDGRLDILVATDVAARGLDVDRITHVVNFDIPNDTESYVHRIGRTGRA 393
Query: 454 G 454
G
Sbjct: 394 G 394
>gi|424851485|ref|ZP_18275882.1| ATP-dependent RNA helicase, partial [Rhodococcus opacus PD630]
gi|356666150|gb|EHI46221.1| ATP-dependent RNA helicase, partial [Rhodococcus opacus PD630]
Length = 466
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 194/336 (57%), Gaps = 21/336 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L G+D+VG A+TG GKT AF +PIL SK
Sbjct: 26 LSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPIL----------SKIDL 75
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
++P LVL PTRELA QV E F Y + GL +YGG Y Q L++G VV+
Sbjct: 76 TQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGAHVVV 135
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G +DLS L + VLDEADEML+MGF EDVE IL + +V LFSA
Sbjct: 136 GTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILADTPEYKQVA--LFSA 193
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ IS +++ +++ K ++N+ + + + + ++
Sbjct: 194 TMPGAIRKISKQYMHD---PVEITMKSKTSTASNISQRYVQVAHQRKLDALTRVLEVEDF 250
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ LA+ L A A++GDI Q+QRE T+ +SG LVAT+V
Sbjct: 251 EA-MIIFVRTKQATEDLAERLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVATDV 309
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 310 AARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 345
>gi|406946236|gb|EKD77505.1| hypothetical protein ACD_42C00315G0003 [uncultured bacterium]
Length = 503
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 142/352 (40%), Positives = 200/352 (56%), Gaps = 28/352 (7%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
SR + + L G E PIQ ++L+G DL+ +A+TG GKT F LPIL L
Sbjct: 25 SRLGLEKEILSALSDLGYEGATPIQEQGIPILLNGQDLLAQAKTGTGKTATFALPILSRL 84
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQ 230
+ RAP L+L+PTRELA QV E F Y V G + +YGG + +Q
Sbjct: 85 NHEL----------RAPQALILVPTRELAIQVAEAFQSYAKHVRGFSVTPIYGGQDFGSQ 134
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
LK+G V++GTPGR+ DH+ R I L++LK VLDEADEML+MGF++DVE ILG++
Sbjct: 135 LRSLKRGSQVIVGTPGRLMDHMRRKTISLNALKMVVLDEADEMLKMGFIDDVEWILGQLT 194
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA-- 348
+ QT LFSATL + ++ I+ ++LK K +K+ TN C +
Sbjct: 195 LPH--QTALFSATLSASIQKIAQRYLKDAHKI-------HIKSHTNTVEATEQCYVTVMN 245
Query: 349 RSQVIPDIIRCYSS--GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
R Q + + R + IIFT TK + +LA+ L A AL+GD+ Q+ RE T+
Sbjct: 246 RHQKLEVLTRFLETEENQAVIIFTRTKTESMELAEKLQARGYNAAALNGDMSQAAREKTI 305
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ G+ L+AT+VAARG+D+ V +I + P DV++Y+HR GRTGRAG
Sbjct: 306 NRLKKGELDILIATDVAARGIDVERVSHVINYDIPHDVDSYVHRIGRTGRAG 357
>gi|404214520|ref|YP_006668715.1| DNA and RNA helicase, Superfamily II [Gordonia sp. KTR9]
gi|403645319|gb|AFR48559.1| DNA and RNA helicase, Superfamily II [Gordonia sp. KTR9]
Length = 590
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 135/340 (39%), Positives = 194/340 (57%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T +L G D+VG A+TG GKT AF +PIL L
Sbjct: 29 VRAAVTDVGYETPSPIQAATIPTLLSGRDVVGLAQTGTGKTAAFAIPILSRLDTS----- 83
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
R P L+L PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 84 -----ARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGA 138
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH++R +D+S L+F VLDEADEML MGF EDVE IL + D +V
Sbjct: 139 QVIVGTPGRVIDHLDRKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETPDTKQVA-- 196
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ K+L S + ++ K + N+ L S + + +
Sbjct: 197 LFSATMPSAIRRLAQKYLNSPQ---EITVKSKTATAQNITQRYLQVSHQRKLDALTRFLE 253
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G LV
Sbjct: 254 VETFDA-MIVFVRTKQATEELAEKLRSRGFSAVAINGDLAQAQRERTINQLKNGSIDILV 312
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 313 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 352
>gi|397736750|ref|ZP_10503428.1| cold-shock DEAD box protein A [Rhodococcus sp. JVH1]
gi|396927331|gb|EJI94562.1| cold-shock DEAD box protein A [Rhodococcus sp. JVH1]
Length = 602
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 198/340 (58%), Gaps = 16/340 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L +++G T + G
Sbjct: 103 LDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRISSGTTGTAALDG 162
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
RA LV++PTREL QV +D + + G L +YGG PY Q L+KG
Sbjct: 163 TPRA---LVIVPTRELCIQVTKDLEGAAKYLKGEKNKLEVLAIYGGRPYETQIATLQKGA 219
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D +G++ L ++ VLDEADEML +GF+ D+E ILG V D K QT+
Sbjct: 220 DVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILGMVPD--KRQTM 277
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ FL ++ +HI + +++++ +++
Sbjct: 278 LFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYR-AHALDKAEMVARVLQ 336
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T+IFT TK +A ++AD L ++HGD+ Q RE L FR+GK LV
Sbjct: 337 AEGRGA-TMIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFRTGKIDVLV 395
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG
Sbjct: 396 ATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAG 435
>gi|227541917|ref|ZP_03971966.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227182360|gb|EEI63332.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 455
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 210/366 (57%), Gaps = 17/366 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + L ++ I F IQA+T + L+G DL+G+ARTG GKTL F +P+L+ + + A
Sbjct: 19 ITDALATQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLDRIFD---DAD 75
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ G P L+++PTREL QV ED + + +YGG PY QE LK G D
Sbjct: 76 IEELDG-TPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKALKDGTD 134
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+GTPGR+ D RG + L +++ VLDEADEML +GF+ +E I+ + + QT+L
Sbjct: 135 LVVGTPGRLIDLYNRGELRLDTVRILVLDEADEMLDLGFLPAIEKIIAGITAEH--QTML 192
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCSSSARSQVIPDII 357
FSAT+P + ++ F+ K + + +A TN + +V + VI ++
Sbjct: 193 FSATMPDAILGLARGFMN---KPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVISRVL 249
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G RTIIF TK SA+++A L GA ++HGD+ QS RE +L GFR G L
Sbjct: 250 QARGRG-RTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVDIL 308
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFK 473
VAT+VAARG+DI+DV +I + P D Y+HR GRTGRAG +T V +P +K
Sbjct: 309 VATDVAARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAG-HTGTAVTLVGYDELPKWK 367
Query: 474 SAAEEL 479
+EL
Sbjct: 368 LINDEL 373
>gi|192361806|ref|YP_001982445.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107]
gi|190687971|gb|ACE85649.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107]
Length = 625
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 137/352 (38%), Positives = 202/352 (57%), Gaps = 21/352 (5%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P + +S P+ + +++ G E PIQA ++LDG D++G A+TG GKT AF LP+
Sbjct: 28 PILFADLALSAPVLKAIQAVGYEVPSPIQAAAIPILLDGGDILGMAQTGTGKTAAFALPL 87
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAP 226
L L + P +LVL PTRELA QV E F Y + G +YGG
Sbjct: 88 LSKLDLSQNE----------PQILVLAPTRELAIQVAEAFQKYAADMPGFHVLPIYGGQD 137
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
+Q +LK+G+ VV+GTPGR+ DH+ RG+++L++LK VLDEADEMLRMGF++DVE IL
Sbjct: 138 MTSQLRQLKRGVHVVVGTPGRVMDHLRRGSLNLNNLKSLVLDEADEMLRMGFIDDVEWIL 197
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346
+ QT LFSAT+P ++ ++ +L+ D K I + + + N+ + S
Sbjct: 198 EHTPETR--QTALFSATMPREIRKVADNYLR-DAKEIKIASTQ--QTGDNIEQVYWMVSG 252
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
+ + + I+ G IIF TK + +LA+ L A L+GD+ Q RE T+
Sbjct: 253 TNKLDALTRILEVEPFDG-MIIFVRTKTATVELAEKLEARGYSAAPLNGDMNQQLRERTI 311
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
++ K ++AT+VAARG+D+ V ++ + P D EAY+HR GRTGRAG
Sbjct: 312 ERLKTSKLDIVIATDVAARGIDVERVSHVVNYDIPYDSEAYVHRIGRTGRAG 363
>gi|452946083|gb|EME51584.1| dead/deah box helicase [Rhodococcus ruber BKS 20-38]
Length = 538
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 141/340 (41%), Positives = 194/340 (57%), Gaps = 16/340 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L LT T S T
Sbjct: 53 LAEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRLT---TAESGTTA 109
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
P LV++PTREL QV +D + + G L +YGG PY Q LKKG+
Sbjct: 110 LDGTPRALVIVPTRELCLQVTQDLENAAKYLPGSTGSLKILSVYGGRPYETQVDVLKKGV 169
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D +G++ L + V+DEADEML +GF+ D+E ILG V D + QT+
Sbjct: 170 DVVVGTPGRLLDLANQGHLILGKIGVLVMDEADEMLDLGFLPDIERILGMVPD--RRQTM 227
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ FL S I E +V + +++++ +++
Sbjct: 228 LFSATMPGPIITLARTFL-SRPTHIRAEEPESSAVHERTNQLVYRAHALDKAELVARVLQ 286
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T+IFT TK +A ++AD L A+HGD+ Q RE L FR GK LV
Sbjct: 287 AEGRGA-TMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQIAREKALDKFRKGKIDVLV 345
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARG+DI+DV ++ + P D + Y+HR GRTGRAG
Sbjct: 346 ATDVAARGIDIDDVTHVVNYQCPEDEKTYVHRIGRTGRAG 385
>gi|381399749|ref|ZP_09924768.1| DEAD/DEAH box helicase domain protein [Microbacterium
laevaniformans OR221]
gi|380772927|gb|EIC06612.1| DEAD/DEAH box helicase domain protein [Microbacterium
laevaniformans OR221]
Length = 717
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 198/335 (59%), Gaps = 14/335 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G + FPIQA T +L G D++ R RTG GKT+AF P++E++ ++A K+
Sbjct: 340 LAELGAAAPFPIQAATIAPILAGKDVLARGRTGSGKTIAFGAPLVEAVLR--SQAGKRRA 397
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
+GR+P L+L PTRELA Q+ +VGL + +YGG P Q LKKG+D++IG
Sbjct: 398 FGRSPKALILAPTRELALQIDRTIQPIARSVGLFTTQIYGGVPAGRQVGALKKGVDIIIG 457
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGRI+D +G +DLS + VLDEAD M +GF+E ++ IL V+ Q LLFSAT
Sbjct: 458 TPGRIEDLQNQGKLDLSEVGIVVLDEADHMSELGFLEPMQRILRLVD--PDAQKLLFSAT 515
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
L V + +FL D ++ G + + S + H VL +++++ ++
Sbjct: 516 LDREVAALVDEFL-VDPAVYEVAGED--QDSGTIDHRVLVIDHRDKAEILTSLV---DRA 569
Query: 364 GRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G+T++F T+ A LA+ A ALHGD+ Q++R L SG+ LVAT+VA
Sbjct: 570 GKTLVFARTRAYAEMLAEQFDDAGIHAVALHGDLNQAKRTRNLERLTSGRVSVLVATDVA 629
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
ARG+ ++D+ L++Q + P + + Y+HRSGRTGRAG
Sbjct: 630 ARGIHVDDIDLVVQADAPDEYKTYLHRSGRTGRAG 664
>gi|315643920|ref|ZP_07897090.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315280295|gb|EFU43584.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 559
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 136/343 (39%), Positives = 202/343 (58%), Gaps = 31/343 (9%)
Query: 123 KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182
KLK +GI P+Q + +++DG D++ RARTG GKTLAF+LPIL+ + P +A
Sbjct: 16 KLKEQGITVPTPVQQESIPLLIDGKDVIARARTGTGKTLAFMLPILQQID--PKRA---- 69
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFD--VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
P L++ PTRELA Q+ E+ G G+ +YGG Q KL+ G +
Sbjct: 70 ----YPQALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKLEGGRHL 125
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
+IGTPGR+ DH+ RG ++L +K VLDEAD+ML MGF++DVE ++ + + QT+LF
Sbjct: 126 IIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDDVEALIHAL--PYRRQTMLF 183
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST-----NVRHIVLPCSSSARSQVIPD 355
SAT+P+ VK ++ ++ + +D+V +K ++ ++ +V+ C+ ++ +
Sbjct: 184 SATMPAGVKQLAGNYMN---QPVDIV----IKGASPIPLEQIQQVVVECTDRSKQDALRT 236
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
+I Y+ IIF TK AS L D L + LHGD+ Q++RE + FR K
Sbjct: 237 MIEQYNPF-LAIIFCRTKRRASILNDALLAHGYQSDELHGDLSQAKREAVMKRFRDAKLQ 295
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD+ V + + P DVE+YIHR GRTGRAG
Sbjct: 296 LLVATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAG 338
>gi|363422948|ref|ZP_09311020.1| dead/deah box helicase [Rhodococcus pyridinivorans AK37]
gi|359732360|gb|EHK81377.1| dead/deah box helicase [Rhodococcus pyridinivorans AK37]
Length = 626
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/338 (41%), Positives = 193/338 (57%), Gaps = 21/338 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L G ES PIQA T +L+G D+VG A+TG GKT AF +PIL + +
Sbjct: 28 QALSDVGYESPSPIQAATIPPLLEGRDVVGLAQTGTGKTAAFAVPILSRIDTSVKR---- 83
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
P LVL PTRELA QV E F Y + GL+ +YGG Y Q L++G V
Sbjct: 84 ------PQALVLAPTRELALQVAEAFGKYSVHIPGLSVLPIYGGQAYGVQLSGLRRGAQV 137
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH+ +G +D+S L+F VLDEADEML MGF EDVE IL D +V LF
Sbjct: 138 IVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVERILADTPDTKQVA--LF 195
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ +S ++LK + ++ K S N+ + S + + I+
Sbjct: 196 SATMPGAIRRLSKQYLKDPQ---EITVKSKTTTSANISQRWVLVSHQRKLDALTRILEVE 252
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+ IIF TK++ LA+ L A A++GDI Q+QRE T+ ++G LVAT
Sbjct: 253 TFEA-MIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTINQLKNGTLDILVAT 311
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 312 DVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAG 349
>gi|403528202|ref|YP_006663089.1| cold-shock DEAD box protein A [Arthrobacter sp. Rue61a]
gi|403230629|gb|AFR30051.1| cold-shock DEAD box protein A [Arthrobacter sp. Rue61a]
Length = 726
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/341 (40%), Positives = 192/341 (56%), Gaps = 25/341 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-----NGPTKA 178
L+ G E PIQA T ++L+G D+VG A+TG GKT AF +P L L NGP++
Sbjct: 86 LQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSRK 145
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKG 237
++ LVL PTRELA QV E F Y + T +YGG+ Y Q L++G
Sbjct: 146 TQ---------ALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRG 196
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DHI +G++DLS L++ VLDEADEMLRMGF +DVE I + + +V
Sbjct: 197 AQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQQTPETRQVA- 255
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P ++ +S ++L + ++ K N + L + + I+
Sbjct: 256 -LFSATMPGQIRRMSKQYLNN---PAEISVKSKTTTGANTKQRYLQVMGPHKLDALTRIL 311
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G I F TK + LAD L A A++GDI Q QRE T+ + G+ L
Sbjct: 312 EVEEFDG-VIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGRIDIL 370
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG
Sbjct: 371 VATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAG 411
>gi|62390044|ref|YP_225446.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
13032]
gi|41325380|emb|CAF19860.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum
ATCC 13032]
Length = 732
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 142/363 (39%), Positives = 206/363 (56%), Gaps = 24/363 (6%)
Query: 100 QERGESEHPNAVSRFR-ISVPLR--EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTG 156
Q ES A S F + +P R + ++ G E+ PIQA T ++++G D+VG A+TG
Sbjct: 90 QPSNESSSTEAKSGFDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTG 149
Query: 157 QGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG- 215
GKT AF LPIL + R+P LVL PTRE A QV + F + VG
Sbjct: 150 TGKTAAFALPILARIDKSV----------RSPQALVLAPTREQALQVADSFQSFADHVGG 199
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
L +YGG Y Q L++G +V+GTPGRI DH+E+G++D+S L+F VLDEADEML
Sbjct: 200 LNVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLN 259
Query: 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
MGF EDVE IL D +V LFSAT+P+ ++ +S ++L + ++ + + +T
Sbjct: 260 MGFQEDVERILEDTPDEKQVA--LFSATMPNGIRRLSKQYLNN---PAEITVKSETRTNT 314
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHG 391
N+ L + + + I+ I+F TK ++A+ L A A++G
Sbjct: 315 NITQRFLNVAHRNKMDALTRILEVTEFEA-MIMFVRTKHETEEVAEKLRARGFSAAAING 373
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q+QRE T+ + G+ LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTG
Sbjct: 374 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTG 433
Query: 452 RAG 454
RAG
Sbjct: 434 RAG 436
>gi|419964790|ref|ZP_14480743.1| cold-shock DEAD-box protein [Rhodococcus opacus M213]
gi|414569902|gb|EKT80642.1| cold-shock DEAD-box protein [Rhodococcus opacus M213]
Length = 544
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 198/340 (58%), Gaps = 16/340 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L +++G T + G
Sbjct: 53 LDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRISSGTTGTAALDG 112
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
RA LV++PTREL QV +D + + G L +YGG PY Q L+KG
Sbjct: 113 TPRA---LVIVPTRELCIQVTKDLEGAAKYLKGEKNKLEVLAIYGGRPYETQIATLQKGA 169
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D +G++ L ++ VLDEADEML +GF+ D+E ILG V D K QT+
Sbjct: 170 DVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILGMVPD--KRQTM 227
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ FL ++ +HI + +++++ +++
Sbjct: 228 LFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYR-AHALDKAEMVARVLQ 286
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T+IFT TK +A ++AD L ++HGD+ Q RE L FR+GK LV
Sbjct: 287 ADGRGA-TMIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFRTGKIDVLV 345
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG
Sbjct: 346 ATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAG 385
>gi|213964614|ref|ZP_03392814.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
gi|213952807|gb|EEB64189.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
Length = 702
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 195/336 (58%), Gaps = 21/336 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
++ G E+ PIQA T ++ G D+VG A+TG GKT AF LPIL +
Sbjct: 76 VRKVGFETPSPIQAATIPTLMSGRDVVGLAQTGTGKTAAFALPILARIDRSV-------- 127
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVI 242
RAP LVL PTRELA QV + F + +G + +YGG Y Q L++G +++
Sbjct: 128 --RAPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGGQSYGVQLSGLRRGAQIIV 185
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G++D+S L+F VLDEADEML+MGF EDVE IL D +V LFSA
Sbjct: 186 GTPGRVIDHLEKGSLDISDLRFLVLDEADEMLQMGFQEDVERILADTPDDKQVA--LFSA 243
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ ++ +S ++L ++ + + + + N+R L S + + I+
Sbjct: 244 TMPASIRRLSKQYLTEPEE---ITVKSQTRTADNIRQRFLMVSHRNKLDALTRILEVEEF 300
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
I+F TK +LA+ L A A++GDI Q+ RE T+ + G+ LVAT+V
Sbjct: 301 EA-MIMFVRTKHETEELAEKLRARGFSAAAINGDIPQTLRERTIDQLKDGRLDILVATDV 359
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 360 AARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 395
>gi|359424178|ref|ZP_09215300.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia amarae NBRC
15530]
gi|358240452|dbj|GAB04882.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia amarae NBRC
15530]
Length = 612
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 136/338 (40%), Positives = 195/338 (57%), Gaps = 21/338 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E + G ES PIQA T +++ G D+VG A+TG GKT AF +PIL L +
Sbjct: 43 EAISDVGYESPSPIQAATIPVLMSGRDVVGLAQTGTGKTAAFAIPILSRLDDS------- 95
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC-LYGGAPYHAQEFKLKKGIDV 240
R P L+L PTRELA QV E F Y + +YGG Y Q LK+G V
Sbjct: 96 ---ARKPQALILAPTRELALQVAEAFGKYSAHMPKVKVLPIYGGQSYVVQLNGLKRGAQV 152
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH++RG +D+S L+F VLDEADEML MGF EDVE IL D+ +V LF
Sbjct: 153 IVGTPGRVIDHLDRGTLDISELEFLVLDEADEMLTMGFAEDVERILADTPDSKQVA--LF 210
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P + ++ ++L +D + I + K + ++N+ L S + + +
Sbjct: 211 SATMPKAISRLAQQYL-NDPEEIKV--KAKTETASNITQRYLQVSHQRKLDALTRFLEVE 267
Query: 361 SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G LVAT
Sbjct: 268 QFDA-MIVFVRTKQATEELAEKLRSRGFSAVAINGDLAQAQRERTINQLKNGTIDILVAT 326
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 327 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 364
>gi|326519741|dbj|BAK00243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 649
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 133/338 (39%), Positives = 207/338 (61%), Gaps = 13/338 (3%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
LRE ++ G + PIQA ++ + L GSD+V A+TG GKTL ++LP + N + +
Sbjct: 173 LRE-VQQAGFSAPSPIQAQSWPIALKGSDIVAVAKTGSGKTLGYLLPGFILVKN--LRHN 229
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ G P+VLVL PTRELA Q+ ++ +G + ++S CLYGGAP Q L++G D
Sbjct: 230 SRDG----PTVLVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLRDLERGAD 285
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+ TPGR+ D +E G + L + + VLDEAD ML MGF + I+ +V+ K QTL+
Sbjct: 286 IVVATPGRLNDILEMGKVSLRQVAYLVLDEADRMLDMGFEPQIRKIVKQVQP--KRQTLM 343
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
F+AT P V+ I++ L ++ +++ +++ A+ ++ V +S + + + I+R
Sbjct: 344 FTATWPREVRKIASDLL-TNPVQVNIGNTDELVANKSITQYVEVTTSMEKGRRLDQILRQ 402
Query: 360 YSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G + IIF TK QL+ L GA A+HGD Q++R+ L+ FR+G+ LVAT
Sbjct: 403 QEPGSKVIIFCSTKRMCDQLSRNLSRQYGASAIHGDKSQAERDSVLSEFRTGRCPILVAT 462
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLD+ D+++++ + P VE Y+HR GRTGRAG
Sbjct: 463 DVAARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAG 500
>gi|448522534|ref|XP_003868713.1| Ded1 protein [Candida orthopsilosis Co 90-125]
gi|380353053|emb|CCG25809.1| Ded1 protein [Candida orthopsilosis]
Length = 636
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 197/346 (56%), Gaps = 15/346 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V G DL+ A+TG GKT F+ P+L ES NGP
Sbjct: 169 LVENIKFSKFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVLSESYANGPAPV 228
Query: 179 SKKTG----YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ TG + P+VLV+ PTREL Q++++ + + C +YGGA Q +L
Sbjct: 229 PESTGTFSSHKAYPTVLVMAPTRELVSQIYDESKKFAYRSWVRPCVVYGGADIGNQIRQL 288
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE--DA 292
+G D+++ TPGR+KD +ERG + L+++K+ VLDEAD ML MGF + I+ + +
Sbjct: 289 DRGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRQIVQECDMPSV 348
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
QTL+FSAT P ++ ++ FLK+ I L S N+ VL + V
Sbjct: 349 ENRQTLMFSATFPRDIQMLARDFLKN---YIFLSVGRVGSTSENITQKVLYVEDDEKKSV 405
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
I D++ +S G TI+FTETK A LAD L A A+HGD Q +RE LA F++G
Sbjct: 406 ILDMLNA-NSAGLTIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKNG 464
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
K LVAT VAARGLDI +V +I + P D++ Y+HR GRTGRAG
Sbjct: 465 KAPILVATAVAARGLDIPNVSHVINYDLPGDIDDYVHRIGRTGRAG 510
>gi|337278789|ref|YP_004618260.1| ATP-dependent RNA helicase [Ramlibacter tataouinensis TTB310]
gi|334729865|gb|AEG92241.1| Candidate ATP-dependent RNA helicase [Ramlibacter tataouinensis
TTB310]
Length = 606
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/347 (40%), Positives = 204/347 (58%), Gaps = 12/347 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+++ + + ++ +G E+ PIQA VL+G DL+ A+TG GKT AF LP+L LT
Sbjct: 16 LKLAPAILKAVREQGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPMLHKLTK 75
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
G K +K G A LVL PTRELA QV E YG + LTS ++GG + Q +
Sbjct: 76 GQGKTNKFGKDGIA--ALVLTPTRELAAQVEESIRTYGKYLPLTSTVIFGGVGMNPQIDR 133
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
+K+G+D+++ TPGR+ D ++G++DLS+++ VLDEAD ML MGF+ DV+ IL V
Sbjct: 134 IKRGVDILVATPGRLLDLQQQGHLDLSTVEVLVLDEADRMLDMGFLPDVKKILALV--PR 191
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
Q+LLFSAT ++ ++ LK+ + N ++ T V H P + Q++
Sbjct: 192 DKQSLLFSATFSDEIRDLANGLLKNPQSIQVTPRNTTVQRITQVVH---PVGRGKKKQLL 248
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
II+ + + ++FT TK A+ +A+ L A ALHG+ Q R LAGF+SG
Sbjct: 249 AHIIQQHDW-SQVLVFTRTKFGANNVAEFLNKNGITAMALHGNKSQGARTQALAGFKSGD 307
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
LVAT++AARG+DI+D+ ++ E P E Y+HR GRTGRAG E
Sbjct: 308 IRALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKE 354
>gi|345001916|ref|YP_004804770.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
SirexAA-E]
gi|344317542|gb|AEN12230.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. SirexAA-E]
Length = 738
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 140/359 (38%), Positives = 204/359 (56%), Gaps = 11/359 (3%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI S FPIQ MT + L GSD++G+A+TG GKTL F LP+LE +T + +
Sbjct: 32 EALEAVGITSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 91
Query: 182 TGYGR---APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
R AP L+++PTREL +QV D G + +YGG Y Q LKKG+
Sbjct: 92 ATPDRLTDAPQALIVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGV 151
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D + +DLS ++ VLDEADEML +GF+ DVE I+ + K QT+
Sbjct: 152 DVVVGTPGRLLDLAGQRKLDLSHIRVLVLDEADEMLDLGFLPDVERIITML--PAKRQTM 209
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P V ++ +++ +++ N V S + +++ I++
Sbjct: 210 LFSATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTTQFVYRAHSMDKPEMVSRILQ 269
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
S G +IF TK +A+ +A+ L + A+HGD+ Q RE L FR+GK LV
Sbjct: 270 AESR-GLAMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 328
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFK 473
T+VAARG+D+ V +I + P + + Y+HR GRTGRAG + IT V IP ++
Sbjct: 329 CTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGT-AITLVDWDDIPRWQ 386
>gi|163839948|ref|YP_001624353.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
gi|162953424|gb|ABY22939.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
Length = 565
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 137/370 (37%), Positives = 209/370 (56%), Gaps = 17/370 (4%)
Query: 94 EAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRA 153
EA E +E + F + + E L GI FPIQ+MT + L G D++G+A
Sbjct: 21 EASPTTTEDPHAEAAETFADFNVRADIVEALADAGIVHPFPIQSMTLPVALGGHDIIGQA 80
Query: 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGR-----APSVLVLLPTRELAKQVHEDFD 208
+TG GKTL F +P+L+ +T A K GY AP L+++PTRELA QV D
Sbjct: 81 KTGTGKTLGFGVPVLQRVT-----APKDEGYDALPVPGAPQALIVVPTRELAVQVANDLQ 135
Query: 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268
G +YGG + Q L KG++VV+GTPGR+ D ++ +++L +++ VLD
Sbjct: 136 TAARKRGARITTIYGGRAFEPQIESLTKGVEVVVGTPGRLIDLFKQRHLNLKNVRMVVLD 195
Query: 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
EADEML +GF+ DVE ++ QT+LFSAT+P + ++ +++ +
Sbjct: 196 EADEMLDLGFLPDVETLMAATPAVR--QTMLFSATMPGPIVAMARRYMTQPTHIRAADPD 253
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---- 384
++ ++R +V S + +V+ I++ GRTIIFT+TK +A+++A+ L
Sbjct: 254 DEGLTKRDIRQLVYRAHSMDKIEVVARILQARGR-GRTIIFTKTKRTAAKVAEELAERGF 312
Query: 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
+ A+HGD+ Q RE L FR+ K LVAT+VAARG+D++DV +I + D + Y+
Sbjct: 313 ASAAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYL 372
Query: 445 HRSGRTGRAG 454
HR GRTGRAG
Sbjct: 373 HRVGRTGRAG 382
>gi|357406358|ref|YP_004918282.1| Cold-shock DEAD box protein A-like protein [Methylomicrobium
alcaliphilum 20Z]
gi|351719023|emb|CCE24697.1| Cold-shock DEAD box protein A homolog [Methylomicrobium
alcaliphilum 20Z]
Length = 578
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 147/343 (42%), Positives = 198/343 (57%), Gaps = 25/343 (7%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L G ES PIQA T ++ G D++G+A+TG GKT AF LPIL L
Sbjct: 19 PVLKALDDVGYESPSPIQAQTIPYLMQGKDVLGQAQTGTGKTAAFALPILSRLD------ 72
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
KKT P VLVL PTRELA QV E F Y + G +YGG Y Q +LK+G
Sbjct: 73 LKKT----EPQVLVLAPTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYTTQLRQLKRG 128
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
V++GTPGR+ DH+ +G + L L VLDEADEMLRMGF++DVE IL + + Q
Sbjct: 129 PHVIVGTPGRVMDHMRKGTLRLGELSCLVLDEADEMLRMGFIDDVEWILEQT--PKQRQI 186
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSARSQVIPD 355
LFSAT+P+ ++ I+ +L D + I + K++ ST +R S + +
Sbjct: 187 ALFSATMPAPIRKIAQTYL-HDPEEITV----KVRTSTAETIRQRYWLVSGVHKLDALTR 241
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
I+ + G IIF TK + +LA+ L A A++GD+ Q RE T+A ++GK
Sbjct: 242 ILESETFDG-IIIFVRTKTATVELAEKLEARGYSAAAINGDMSQVLRERTIAHLKNGKLD 300
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
L+AT+VAARGLD+ V +I + P D EAYIHR GRTGRAG
Sbjct: 301 ILIATDVAARGLDVERVSHVINYDIPYDTEAYIHRIGRTGRAG 343
>gi|311743209|ref|ZP_07717016.1| DeaD protein, partial [Aeromicrobium marinum DSM 15272]
gi|311313277|gb|EFQ83187.1| DeaD protein [Aeromicrobium marinum DSM 15272]
Length = 567
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 194/336 (57%), Gaps = 21/336 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E+ PIQA +LDG D+VG A+TG GKT AF LPILE L P +A +
Sbjct: 21 LAGLGYETPTPIQAQAIGPLLDGRDVVGLAQTGTGKTAAFALPILERLD--PDRAETQA- 77
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
L+L PTRELA QV + F Y GL +YGG Y AQ L++G VV+
Sbjct: 78 -------LILAPTRELALQVSDAFATYAARTPGLRILPVYGGQGYAAQLRGLQRGAHVVV 130
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH++RG+++LS L VLDEADEML MGF EDVE IL + +V LFSA
Sbjct: 131 GTPGRVIDHLDRGSLELSGLDHLVLDEADEMLTMGFAEDVERILADTPEDKQVA--LFSA 188
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ ++ K+L +D+ +++T VR + + + ++ +
Sbjct: 189 TMPPAIRRLAKKYLND---PVDVATPAATRSTTTVRQRWISVPHHGKFDALTRLLEVENG 245
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G IIF TK++ +LA+ L A AL+GD+ Q+QRE + + G LVAT+V
Sbjct: 246 DG-MIIFVRTKQATEELAEKLRSRGFDAAALNGDLVQAQRERIVGQLKGGSLDILVATDV 304
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARGLD++ + +I + P D E+Y+HR GRTGRAG
Sbjct: 305 AARGLDVDRITHVINHDIPHDAESYVHRIGRTGRAG 340
>gi|407277792|ref|ZP_11106262.1| dead/deah box helicase [Rhodococcus sp. P14]
Length = 538
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 140/342 (40%), Positives = 198/342 (57%), Gaps = 20/342 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L LT T S T
Sbjct: 53 LAEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRLT---TAESGTTA 109
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
P LV++PTREL QV +D + + G L +YGG PY Q LKKG+
Sbjct: 110 LDGTPRALVIVPTRELCLQVTQDLENAAKYLPGSTGALKILSVYGGRPYETQVDVLKKGV 169
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D +G++ L + V+DEADEML +GF+ D+E ILG V D + QT+
Sbjct: 170 DVVVGTPGRLLDLANQGHLILGKIGVLVMDEADEMLDLGFLPDIERILGMVPD--RRQTM 227
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR--HIVLPCSSSARSQVIPDI 356
LFSAT+P + ++ FL + + E ++ + R +V + +++++ +
Sbjct: 228 LFSATMPGPIITLARTFL---TRPTHIRAEEPESSAVHERTNQLVYRAHALDKAELVARV 284
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412
++ G T+IFT TK +A ++AD L A+HGD+ Q RE L FR GK
Sbjct: 285 LQAEGRGA-TMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQIAREKALDKFRKGKIDV 343
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARG+DI+DV ++ + P D + Y+HR GRTGRAG
Sbjct: 344 LVATDVAARGIDIDDVTHVVNYQCPEDEKTYVHRIGRTGRAG 385
>gi|425734748|ref|ZP_18853065.1| DEAD/DEAH box helicase [Brevibacterium casei S18]
gi|425480684|gb|EKU47848.1| DEAD/DEAH box helicase [Brevibacterium casei S18]
Length = 592
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 141/339 (41%), Positives = 197/339 (58%), Gaps = 24/339 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
+++ G ES PIQA T ++ G D++G A+TG GKT AF LPIL L
Sbjct: 26 VEALGYESPSPIQAATIPALVAGRDVIGLAQTGTGKTAAFALPILSHLAEA--------- 76
Query: 184 YGRA---PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGID 239
GRA P LVL PTRELA QV E F Y + + +YGG Y Q LK+G
Sbjct: 77 -GRASDGPFALVLTPTRELALQVAEAFTSYATNLDDFSVLPIYGGQSYGPQLAGLKRGAQ 135
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ DH++RG++ L +L+ VLDEADEML+MGF ED+E I D+ +V L
Sbjct: 136 VVVGTPGRVIDHLKRGSLKLENLQHLVLDEADEMLKMGFAEDIEEIFNATGDSRQVA--L 193
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P+ + ++ K+L +D + + + K + +N+R L S + + I+
Sbjct: 194 FSATMPTSIHRLTGKYL-NDPEEVRVAA--KSQTGSNIRQRYLMVQHSHKLDALTRILEV 250
Query: 360 YSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
G I+F TK++ +LA+ L A A++GDI Q RE T+ R GK LVA
Sbjct: 251 EEYDG-IIMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTVEMLREGKIDILVA 309
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
T+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 310 TDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAG 348
>gi|432334488|ref|ZP_19586164.1| cold-shock DEAD-box protein [Rhodococcus wratislaviensis IFP 2016]
gi|430778572|gb|ELB93819.1| cold-shock DEAD-box protein [Rhodococcus wratislaviensis IFP 2016]
Length = 544
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 198/340 (58%), Gaps = 16/340 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L +++G T + G
Sbjct: 53 LDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRISSGTTGTAALDG 112
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
RA LV++PTREL QV +D + + G L +YGG PY Q L+KG
Sbjct: 113 TPRA---LVIVPTRELCIQVTKDLEGAAKYLKGEKNKLEVLAIYGGRPYETQIATLQKGA 169
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D +G++ L ++ VLDEADEML +GF+ D+E ILG V D K QT+
Sbjct: 170 DVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILGMVPD--KRQTM 227
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ FL ++ +HI + +++++ +++
Sbjct: 228 LFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYR-AHALDKAEMVARVLQ 286
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T+IFT TK +A ++AD L ++HGD+ Q RE L FR+GK LV
Sbjct: 287 ADGRGA-TMIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFRTGKIDVLV 345
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG
Sbjct: 346 ATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAG 385
>gi|297624335|ref|YP_003705769.1| DEAD/DEAH box helicase [Truepera radiovictrix DSM 17093]
gi|297165515|gb|ADI15226.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
17093]
Length = 526
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 144/345 (41%), Positives = 193/345 (55%), Gaps = 25/345 (7%)
Query: 118 VPLR----EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+PLR L++KG + IQA T L G D++G ARTG GKTLAF LPI L
Sbjct: 5 LPLRASLSRALEAKGFSTPTTIQAATLPHALAGGDVLGLARTGTGKTLAFGLPIANRL-- 62
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
++ GRAP L+L PTRELA QV + + A +YGG Y Q
Sbjct: 63 -----EPESARGRAPRALILTPTRELALQVAGELEWL--APEHNVVTVYGGTGYGKQASD 115
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
LK+G D+V+ TPGR D+ ++G + LS ++ VLDEADEML GF EDVEL+L
Sbjct: 116 LKRGADIVVATPGRAVDYYKQGVLQLSRVEVAVLDEADEMLNAGFEEDVELLLAATP--Q 173
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
+ QTLLFSATLP W + ++ + L+ L N S + + + ++R V+
Sbjct: 174 ERQTLLFSATLPRWAESLAARHLRDP-----LRANVTSDESVSYDEVAIEAPLASRLGVL 228
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGK 409
D++ + +G +I+FT TK +LA L A A+HGD+ Q QRE L FR+ +
Sbjct: 229 SDVLHVHGTGA-SIVFTRTKAEVDELAKALTSLGHLAEAVHGDLNQVQRERVLERFRASQ 287
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLDI +V L++ P E Y HRSGRTGRAG
Sbjct: 288 VTVLVATDVAARGLDIPEVDLVVHYRFPEQPERYQHRSGRTGRAG 332
>gi|383820631|ref|ZP_09975884.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium phlei RIVM601174]
gi|383334548|gb|EID12986.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium phlei RIVM601174]
Length = 559
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 138/332 (41%), Positives = 193/332 (58%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ IQA T +L GSD+VG A+TG GKT AF +P+L SK R
Sbjct: 32 GYETPSAIQAATIPAMLAGSDVVGLAQTGTGKTAAFAIPLL----------SKIDPKRRD 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
LVL PTRELA QV E F YG + + +YGGA Y Q LK+G VV+GTPG
Sbjct: 82 TQALVLAPTRELALQVAEAFGRYGAHLPEINVLPIYGGASYGPQLAGLKRGAQVVVGTPG 141
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G +DLS L + VLDEADEML MGF E+VE IL + + +V LFSAT+P+
Sbjct: 142 RVIDHLEKGRLDLSHLDYLVLDEADEMLTMGFAEEVERILAETPEYKQVA--LFSATMPA 199
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+K I+TK+L +++ K + N+ + + + + ++ G
Sbjct: 200 AIKKITTKYLHD---PVEVTVKSKTATAENISQRYIQVAGPRKMDALTRVLEV-EQGDAM 255
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK++ ++A+ L A A++GDI Q+QRE T+A + G LVAT+VAARG
Sbjct: 256 IVFVRTKQATEEVAERLRARGFAAAAINGDIPQAQRERTIAALKDGTIDILVATDVAARG 315
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 316 LDVERISHVLNYDIPHDTESYVHRIGRTGRAG 347
>gi|292486843|ref|YP_003529713.1| cold-shock DEAD box protein A [Erwinia amylovora CFBP1430]
gi|292900759|ref|YP_003540128.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
gi|428783772|ref|ZP_19001265.1| Cold-shock DEAD box protein A [Erwinia amylovora ACW56400]
gi|291200607|emb|CBJ47739.1| ATP-dependent RNA helicase (cold-shock dead-box protein) [Erwinia
amylovora ATCC 49946]
gi|291552260|emb|CBA19297.1| Cold-shock DEAD box protein A [Erwinia amylovora CFBP1430]
gi|312170911|emb|CBX79170.1| Cold-shock DEAD box protein A [Erwinia amylovora ATCC BAA-2158]
gi|426277487|gb|EKV55212.1| Cold-shock DEAD box protein A [Erwinia amylovora ACW56400]
Length = 638
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 139/346 (40%), Positives = 202/346 (58%), Gaps = 26/346 (7%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
++ L E L G PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
T +AP +LVL PTRELA QV E + + GL LYGG Y Q L
Sbjct: 71 TV--------KAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G VV+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ D +
Sbjct: 123 RQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R + +A +
Sbjct: 182 -QTALFSATMPEAIRRITKRFMKDPQEV-------RIQSSMTTRPDISQSYWTAYGRKTD 233
Query: 355 DIIRCYSSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ R + IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G
Sbjct: 234 ALTRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 293
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 294 RLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAG 339
>gi|302307229|ref|NP_983823.2| ADL273Cp [Ashbya gossypii ATCC 10895]
gi|442570182|sp|Q75B50.2|DED1_ASHGO RecName: Full=ATP-dependent RNA helicase DED1
gi|299788899|gb|AAS51647.2| ADL273Cp [Ashbya gossypii ATCC 10895]
gi|374107035|gb|AEY95943.1| FADL273Cp [Ashbya gossypii FDAG1]
Length = 623
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 143/361 (39%), Positives = 203/361 (56%), Gaps = 19/361 (5%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLF----PIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P+ ++ F S PL E L + F P+Q + +V G DL+ A+TG GKT F
Sbjct: 142 PDPITEF-TSPPLDELLLENIKLARFTKPTPVQKYSVPIVAKGRDLMACAQTGSGKTGGF 200
Query: 164 VLPIL-ESLTNGPTKASKKTGYGR---APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
+ P+L +S +NGP ++GY P+ +VL PTRELA Q+ ++ + + C
Sbjct: 201 LFPVLSQSFSNGPASTPDESGYYMRKAYPTAVVLAPTRELATQIFDEAKKFTYRSWVKPC 260
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
+YGGA Q +L++G D+++ TPGR+ D +ERG I L S+K+ VLDEAD ML MGF
Sbjct: 261 VVYGGADIRQQIRELERGCDLIVATPGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFE 320
Query: 280 EDVELIL--GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
+ I+ + QTL+FSAT P+ ++H++ FLK I L S N+
Sbjct: 321 PQIRHIVEGCDMPTVENRQTLMFSATFPTDIQHLAADFLKD---YIFLSVGRVGSTSENI 377
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDI 393
VL + V+ D++ S GG T++F ETK A L D L A A+HGD
Sbjct: 378 TQKVLHVEDIDKRSVLLDLLAA-SDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDR 436
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q++RE LA FR+G+ LVAT VAARGLDI +V +I + P D++ Y+HR GRTGRA
Sbjct: 437 TQAERERALAFFRTGRANVLVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRA 496
Query: 454 G 454
G
Sbjct: 497 G 497
>gi|451943504|ref|YP_007464140.1| hypothetical protein A605_03835 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451902891|gb|AGF71778.1| hypothetical protein A605_03835 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 411
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 143/363 (39%), Positives = 207/363 (57%), Gaps = 15/363 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L + GI F IQ +T + LDG+DL+G+ARTG GKT AF +P+L+ + + ++
Sbjct: 5 EALAAVGITRTFAIQELTLPLALDGTDLIGQARTGMGKTYAFGVPLLDRVFD----SADI 60
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
+P LV++PTRELA QV D +V + + +YGG PY Q L +G+DVV
Sbjct: 61 EELDGSPRALVVVPTRELAVQVGRDLEVAAAKLPVRLATIYGGRPYEEQIEALTEGVDVV 120
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ D RG + L + VLDEADEML +GF+ D+E IL + ++ QT+LFS
Sbjct: 121 VGTPGRLLDLHNRGELKLDKVAVLVLDEADEMLDLGFLPDIEKILAAL--THQHQTMLFS 178
Query: 302 ATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
AT+P + +S F+ ++ G+ + ++T +V + V I++
Sbjct: 179 ATMPGPILSLSRTFMNRPVHIRAEMTGSAQTHSTTE--QVVFQAHRMDKPAVTARILQAR 236
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
GRTIIF TK +A+ +A+ L G A+HGD+ Q RE +L FR G LVAT
Sbjct: 237 GR-GRTIIFARTKRTAADVAEELAGRGFAVGAVHGDMGQPARERSLKAFRDGTVDILVAT 295
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAA 476
+VAARG+DI DV +I + P D Y+HR GRTGRAG + +T V + +KS
Sbjct: 296 DVAARGIDITDVTHVINYQTPDDPMTYVHRIGRTGRAG-HSGIAVTLVGYDELMKWKSIN 354
Query: 477 EEL 479
+EL
Sbjct: 355 DEL 357
>gi|71906757|ref|YP_284344.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal, partial [Dechloromonas aromatica RCB]
gi|71846378|gb|AAZ45874.1| ATP-dependent RNA helicase CsdA [Dechloromonas aromatica RCB]
Length = 606
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 137/348 (39%), Positives = 194/348 (55%), Gaps = 28/348 (8%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L + L G E+ PIQA ++L+G DL+G A+TG GKT AF LP++E +
Sbjct: 13 LSETLLQTLTQIGYETPSPIQAQCIPVLLEGHDLIGMAQTGTGKTAAFALPLMEQIDVKL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
TK P L+L PTRELA QV E Y + G +YGG Y Q +L
Sbjct: 73 TK----------PQALILTPTRELAIQVAEALQTYAKNLPGFHVLPIYGGQSYTIQLKQL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+G V++GTPGR+ DH+ER ++L LK VLDEADEMLRMGF++DVE IL + +
Sbjct: 123 SRGAHVIVGTPGRVMDHLERKTLNLDHLKTMVLDEADEMLRMGFIDDVEWILERTPAQH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST----NVRHIVLPCSSSARS 350
QT LFSAT+P ++ ++ K+L ++ K+K++T +R + S +
Sbjct: 182 -QTALFSATMPEQIRRVAQKYLVEPREI-------KIKSATATVAAIRQVYWQVSGMHKL 233
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFR 406
+ I+ IIF TK + +LAD L A AL+GD+ Q RE + +
Sbjct: 234 DALTRILEVEEDFDAAIIFVRTKTATVELADKLSARGYAAAALNGDLNQQMRERVIEQLK 293
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
SG ++AT+VAARG+D+ V ++ + P D EAY+HR GRTGRAG
Sbjct: 294 SGALDIVIATDVAARGIDVPRVSHVVNYDIPYDTEAYVHRIGRTGRAG 341
>gi|386287044|ref|ZP_10064223.1| Cold-shock DEAD box protein A-like protein [gamma proteobacterium
BDW918]
gi|385279960|gb|EIF43893.1| Cold-shock DEAD box protein A-like protein [gamma proteobacterium
BDW918]
Length = 644
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 144/373 (38%), Positives = 208/373 (55%), Gaps = 23/373 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
+K+ G E PIQA T ++L G D+VG+A+TG GKT AF LP+L L S++T
Sbjct: 61 VKAVGYEIPSPIQAATIPLILAGRDVVGQAQTGTGKTAAFALPLLSRLDVN----SRRT- 115
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
L+L PTRELA QV E Y + G +YGG Y Q LK+G+ VV+
Sbjct: 116 -----QALILAPTRELAIQVAEALQSYASQLPGFNVLPIYGGQDYRGQLAALKRGVQVVV 170
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ RG + L L VLDEADEMLRMGF++DVE ++ ++ K Q LFSA
Sbjct: 171 GTPGRVMDHMRRGTLKLDDLTHLVLDEADEMLRMGFIDDVEWVMSQMP--AKRQIALFSA 228
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+PS ++ I+T +L + ++ + K + +R + + I+
Sbjct: 229 TMPSAIRRIATTYLTNPEQ---VTIQTKTSTAITIRQRYWMARGLNKLDALTRILEAEPF 285
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G IIF TK ++LA+ L A AL+GDI Q+QRE T+ ++G+ ++AT+V
Sbjct: 286 DG-MIIFVRTKLVTTELAEKLQARGYAAAALNGDIAQAQRERTVEQLKNGRLDIVIATDV 344
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV--EAAETITQVSDSVIPAFKSAA 476
AARGLD+ + +I + P D EAY+HR GRTGRAG +A + ++ A + A
Sbjct: 345 AARGLDVERISHVINYDIPHDTEAYVHRIGRTGRAGRSGDAILFVAPREKRMLQAIERAT 404
Query: 477 EELLNNSGLSAAE 489
+ + GL +AE
Sbjct: 405 RQSIEEMGLPSAE 417
>gi|354604010|ref|ZP_09022003.1| hypothetical protein HMPREF9450_00918 [Alistipes indistinctus YIT
12060]
gi|353348442|gb|EHB92714.1| hypothetical protein HMPREF9450_00918 [Alistipes indistinctus YIT
12060]
Length = 645
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 206/365 (56%), Gaps = 28/365 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLD---GSDLVGRARTGQGKTLAFVLPILESLT--NGPTKA 178
+K+KG E+ PIQ +T ++LD +D++ +A+TG GKT AF LP+LE LT GP +
Sbjct: 20 IKAKGFETPSPIQKLTIPVLLDEDKHNDIIAQAQTGTGKTAAFGLPVLERLTPKKGPVQG 79
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
L+L+PTRELA QV E+ + L +YGGA Q +L KG+
Sbjct: 80 ------------LILVPTRELALQVTEELLSFNKYSKLVITAIYGGASMSEQLRRLGKGV 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
D+V+GTPGRI DH+ RG ++L L++ +LDEADEML MGF++DVE IL + D ++ L
Sbjct: 128 DIVVGTPGRILDHLRRGTLNLKELQYLILDEADEMLNMGFIDDVEAILAESNDYRRI--L 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P+ + +S +++K D + + + E T+ I S + + II
Sbjct: 186 LFSATMPARIVELSKRYMK-DVEVLRVPSQEMTTDLTD--QIYFEVRDSDKFDALTRIID 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
I+F TK + +L L A LHGD+ Q+QRE L F++ + L
Sbjct: 243 VEPE-FYGIVFCRTKVAVDELVTRLTQRGYAAEGLHGDVSQAQREKILKKFKNKQVTILA 301
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS 474
AT+VAARG+DIN++ +I P+D E+Y+HR GRTGRAG IT +S S F
Sbjct: 302 ATDVAARGIDINNLTHVINYSLPQDSESYVHRIGRTGRAG-NTGTAITFISSSEYRQFVM 360
Query: 475 AAEEL 479
E+
Sbjct: 361 MQREI 365
>gi|21673432|ref|NP_661497.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
gi|21646533|gb|AAM71839.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
Length = 657
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 146/369 (39%), Positives = 205/369 (55%), Gaps = 25/369 (6%)
Query: 105 SEHPNAVSRFR---ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
SE + FR ++ PL L++ G E+ PIQA T ++L+G D++G+A+TG GKT
Sbjct: 20 SEQQDNSVNFRSLELAEPLLRALEAVGYENPTPIQASTIPLLLEGRDVLGQAQTGTGKTA 79
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCC 220
AF LP+L ++ T P LVL PTRELA QV E F Y + G
Sbjct: 80 AFALPVLSNIDLSATD----------PQALVLAPTRELAIQVAEAFHTYAEFMPGFHVLP 129
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
+YGG Y Q LK+G+ VV+GTPGR+ DH+ +G ++L +LK VLDEADEMLRMGF++
Sbjct: 130 IYGGQDYGVQIRNLKRGVHVVVGTPGRVMDHMRKGTLNLDNLKCLVLDEADEMLRMGFID 189
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
DVE IL + ++ +V LFSAT+P + I+ K+LK+ ++ K +R
Sbjct: 190 DVEWILDQTPESRQVA--LFSATMPQPIVRIARKYLKA---PAEITIQTKTTTVETIRQR 244
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQS 396
+ + I+ G IIF TK LA+ L A AL+GD+ QS
Sbjct: 245 YWMVGGHHKLDALTRILEVEPFDG-IIIFVRTKTETVALAEKLQARGYAAAALNGDMVQS 303
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
RE T+ + G ++AT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG
Sbjct: 304 ARERTIEQLKDGTLNIVIATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAG-R 362
Query: 457 AAETITQVS 465
+ E I VS
Sbjct: 363 SGEAILFVS 371
>gi|254432488|ref|ZP_05046191.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
gi|197626941|gb|EDY39500.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
Length = 610
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 137/338 (40%), Positives = 197/338 (58%), Gaps = 21/338 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L + G PIQ ++ G DLVG+A+TG GKT AF LP+L L
Sbjct: 62 EALAAIGYSEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLAGLD--------- 112
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDV 240
R P VLVL PTRELA QV E F+ Y + + + +YGGA + Q L++G V
Sbjct: 113 -AEQRKPQVLVLAPTRELALQVAESFNSYAAQLPQVRTVAVYGGADFRDQIHHLRRGAQV 171
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH+ +G +DLS L+ VLDEADEMLRMGF++DVE +LG++ + +V +LF
Sbjct: 172 VVGTPGRVMDHMRQGTLDLSELRSLVLDEADEMLRMGFIDDVEWVLGQLPEQRQV--VLF 229
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P+ ++ IS ++L ++ K ++ +R L + + + ++
Sbjct: 230 SATMPAEIRRISQQYLNGPA---EITIRTKAADASRIRQRFLTVPAPLKLAALERVLESE 286
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+S G IIF TK +A+ L L+GD+ Q+QRE T+ ++G+ LVAT
Sbjct: 287 TSEG-VIIFARTKAITLTVAESLEAHGYDVAVLNGDVPQAQRERTIERLKNGQVDVLVAT 345
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLD+ + L+I + P D EAY+HR GRTGRAG
Sbjct: 346 DVAARGLDVERIGLVINYDIPFDGEAYVHRIGRTGRAG 383
>gi|453075407|ref|ZP_21978194.1| dead/deah box helicase [Rhodococcus triatomae BKS 15-14]
gi|452763129|gb|EME21412.1| dead/deah box helicase [Rhodococcus triatomae BKS 15-14]
Length = 587
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 138/336 (41%), Positives = 194/336 (57%), Gaps = 21/336 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T ++ G+D+VG A+TG GKT AF +PIL S+
Sbjct: 30 LNDVGYESPSPIQAATIPPLMAGNDVVGLAQTGTGKTAAFAVPIL----------SRIDT 79
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
+ P LVL PTRELA QV E F Y + GL +YGG Y Q L++G V++
Sbjct: 80 EQKRPQALVLAPTRELALQVAEAFGKYSAHIPGLQVLPIYGGQSYGVQLSGLRRGAQVIV 139
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G +DL+ L + VLDEADEML+MGF EDVE IL + + +V LFSA
Sbjct: 140 GTPGRVIDHLEKGTLDLTHLDYLVLDEADEMLKMGFQEDVEKILAETPEYKQVA--LFSA 197
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ IS ++L +++ K +TN+ + + + + I+
Sbjct: 198 TMPPAIRKISKQYLHD---PVEITVKGKTSTATNITQRWVQVAHQRKLDALTRILEVEQF 254
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ LA+ L A A++GDI Q+QRE T+ +SG LVAT+V
Sbjct: 255 EA-MIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDV 313
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 314 AARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 349
>gi|385786988|ref|YP_005818097.1| ATP-dependent RNA helicase DeaD [Erwinia sp. Ejp617]
gi|310766260|gb|ADP11210.1| ATP-dependent RNA helicase DeaD [Erwinia sp. Ejp617]
Length = 638
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 141/348 (40%), Positives = 203/348 (58%), Gaps = 30/348 (8%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
++ L E L G PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
T +AP +LVL PTRELA QV E DF + GL LYGG Y Q
Sbjct: 71 TV--------KAPQILVLAPTRELAVQVAEAVTDFSKH--MRGLNVVALYGGQRYDVQLR 120
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ D
Sbjct: 121 ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDG 180
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K ++ ++++S R + +A +
Sbjct: 181 H--QTALFSATMPEAIRRITKRFMKDPQEV-------RIQSSLTTRPDISQSYWTAYGRK 231
Query: 353 IPDIIRCYSSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFR 406
+ R + IIF TK + ++A+ L + AL+GD+ Q+ RE TL +
Sbjct: 232 TDALTRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 291
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 292 DGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAG 339
>gi|331694934|ref|YP_004331173.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326949623|gb|AEA23320.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
CB1190]
Length = 621
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 146/369 (39%), Positives = 208/369 (56%), Gaps = 21/369 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKTL F +P+L+ + P + T
Sbjct: 112 LAEVGIERTFAIQELTLPLALAGEDLIGQARTGTGKTLGFGVPLLQRIVP-PAERPAATA 170
Query: 184 YGRA-------PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
G A P LV++PTREL QV +D G +G+ +YGG Y Q L+K
Sbjct: 171 EGEAADRTKDVPQALVVVPTRELCVQVAQDLTDAGRDLGIRVTAIYGGRAYEPQLNALRK 230
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G+DVV+GTPGR+ D E+ ++ L + VLDEADEML +GF+ DVE IL + + + Q
Sbjct: 231 GVDVVVGTPGRLLDLAEQRHLALGRVGVLVLDEADEMLDLGFLPDVERILRMLPE--ERQ 288
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR--HIVLPCSSSARSQVIP 354
T+LFSAT+P + +S FL + + E + S + R V + + +++
Sbjct: 289 TMLFSATMPGPIIALSRAFL---NRPTHIRAEESDQGSIHERTKQHVYRAHAMDKVELLT 345
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
+++ G T+IF TK + ++AD L A A+HGD+ Q RE L FRSGK
Sbjct: 346 RVLQAKDR-GLTMIFARTKRTVQRVADDLAERGFAAAAVHGDLGQGAREQALRAFRSGKV 404
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIP 470
LVAT+VAARG+D+ DV +I + P D + Y+HR GRTGRAG E +T V +P
Sbjct: 405 DVLVATDVAARGIDVTDVTHVINYQCPEDAKTYVHRIGRTGRAGKEGV-AVTLVDWDEMP 463
Query: 471 AFKSAAEEL 479
+K ++EL
Sbjct: 464 RWKLVSDEL 472
>gi|149240601|ref|XP_001526175.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013500|sp|A5DZE6.1|DED1_LODEL RecName: Full=ATP-dependent RNA helicase DED1
gi|146450298|gb|EDK44554.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 664
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 145/369 (39%), Positives = 205/369 (55%), Gaps = 15/369 (4%)
Query: 97 VEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTG 156
VE G E N+ + + L E +K P+Q + +V G DL+ A+TG
Sbjct: 163 VEASGEGVPEPINSFTAPPLDELLVENIKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTG 222
Query: 157 QGKTLAFVLPIL-ESLTNGPTKASKKTG----YGRAPSVLVLLPTRELAKQVHEDFDVYG 211
GKT F+ P+L ES NGP + TG + P++LV+ PTREL Q++++ +
Sbjct: 223 SGKTGGFLFPVLSESYMNGPAPIPESTGAFSSHKVYPTILVMAPTRELVSQIYDESKKFA 282
Query: 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271
+ C +YGGA Q +L +G D+++ TPGR+KD +ERG + L+++K+ VLDEAD
Sbjct: 283 YRSWVRPCVVYGGADIGNQIRQLDRGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEAD 342
Query: 272 EMLRMGFVEDVELILGKVE--DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE 329
ML MGF + I+ + + D QTL+FSAT P ++ ++ FLK I L
Sbjct: 343 RMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSATFPRDIQMLARDFLKD---YIFLSVGR 399
Query: 330 KMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG---- 385
S N+ VL + VI D++ +S G TI+FTETK A LAD L
Sbjct: 400 VGSTSENITQKVLYVEDEEKKSVILDLLNA-NSEGLTIVFTETKRMADNLADFLYDQGFP 458
Query: 386 ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445
A A+HGD Q +RE LA F+SG+ LVAT VAARGLDI +V +I + P D++ Y+H
Sbjct: 459 ATAIHGDRSQYEREKALAAFKSGQAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVH 518
Query: 446 RSGRTGRAG 454
R GRTGRAG
Sbjct: 519 RIGRTGRAG 527
>gi|401676931|ref|ZP_10808912.1| ATP-dependent RNA helicase CsdA [Enterobacter sp. SST3]
gi|400215840|gb|EJO46745.1| ATP-dependent RNA helicase CsdA [Enterobacter sp. SST3]
Length = 631
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNNIDPD- 71
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 72 ---------LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ D +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPDGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITKRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|184200206|ref|YP_001854413.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
DC2201]
gi|183580436|dbj|BAG28907.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
DC2201]
Length = 719
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 190/336 (56%), Gaps = 15/336 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E PIQA T +L G D+VG A+TG GKT AF +P L L + S G
Sbjct: 91 LDEVGYEYPSPIQAATIPALLSGRDVVGLAQTGTGKTAAFAVPALSKLA----ELSDLHG 146
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R+ VLVL PTRELA QV E F Y + T +YGG+ Y Q LK+G VV+
Sbjct: 147 PQRSTRVLVLAPTRELALQVAEAFGSYATHLEDFTVLPVYGGSSYGPQLAGLKRGAQVVV 206
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ +G++ L + + VLDEADEMLRMGF EDVE IL + + Q LFSA
Sbjct: 207 GTPGRVIDHLSKGSLKLDDIAYVVLDEADEMLRMGFSEDVEKILAQT--PVEKQVALFSA 264
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ I+ ++L+ + ++ K TN R + + + ++
Sbjct: 265 TMPKAIRRIAQQYLRDPQ---EITVKAKTTTGTNTRQRYMQVMGPHKLDAMTRVLEVEDY 321
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK + ++AD L A A++GDI Q+ RE T+ R GK LVAT+V
Sbjct: 322 DG-VIVFVRTKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLREGKIDILVATDV 380
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 381 AARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAG 416
>gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
Length = 707
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 152/388 (39%), Positives = 221/388 (56%), Gaps = 28/388 (7%)
Query: 73 EPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESL 132
EP ++ +E + + +AKV PE ++ ++ E + P + + + +K G E
Sbjct: 43 EPQDVTNEAVESENAEAKV-PE---KDNQQSEEQQP-SFDGLGLPENVLAAVKKVGFEVP 97
Query: 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192
PIQA T ++++G D+VG A+TG GKT AF LPIL + SK R P LV
Sbjct: 98 SPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSRI-----DVSK-----RHPQALV 147
Query: 193 LLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDH 251
L PTRELA QV E F + +G + +YGG Y Q L++G +V+GTPGR+ DH
Sbjct: 148 LAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRRGAHIVVGTPGRVIDH 207
Query: 252 IERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA-NKVQTLLFSATLPSWVKH 310
+E+G++D+S L+F VLDEADEML MGF EDVE IL ED + Q LFSAT+PS ++
Sbjct: 208 LEKGSLDISELRFMVLDEADEMLNMGFQEDVERIL---EDTPSDKQVALFSATMPSGIRR 264
Query: 311 ISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFT 370
+S ++L SD + I + + + S N+ L S + + I+ I+F
Sbjct: 265 LSKQYL-SDPREITVKATQ--RTSENIEQDYLLVSHRDKLDALTRILEITEFEA-MIMFV 320
Query: 371 ETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
TK +LA+ L A A++GDI Q+ RE T+ + G+ LVAT+VAARGLD++
Sbjct: 321 RTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVATDVAARGLDVD 380
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ + + P D E+Y+HR GRTGRAG
Sbjct: 381 RITHVFNYDIPHDTESYVHRIGRTGRAG 408
>gi|403217071|emb|CCK71566.1| hypothetical protein KNAG_0H01520 [Kazachstania naganishii CBS
8797]
Length = 621
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 152/370 (41%), Positives = 204/370 (55%), Gaps = 28/370 (7%)
Query: 105 SEHPNAVSRFRISVPLREKL----KSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
+E P+ + F S PL + L + G P+Q + +V G DL+G A+TG GKT
Sbjct: 129 TEVPDPIEEF-TSPPLEQLLFDNVQRAGFSKPTPVQKYSIPIVTAGRDLMGCAQTGSGKT 187
Query: 161 LAFVLPIL-ESLTNGPTK----ASKKTGYGR--APSVLVLLPTRELAKQVHEDFDVYGGA 213
F+ PIL E T GP AS Y R P+ LVL PTRELA Q+ E+ +
Sbjct: 188 GGFLFPILSEMFTAGPAPKPQAASGGYSYQRKVYPTALVLAPTRELATQIFEEARKFTYR 247
Query: 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
+ C +YGGAP AQ +L++G D+++ TPGR+ D +ERG I L+++K+ LDEAD M
Sbjct: 248 SWVRPCVVYGGAPVGAQMGELERGCDLLVATPGRLNDLLERGKISLANIKYLTLDEADRM 307
Query: 274 LRMGFVEDVELILGKVEDA-----NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328
L MGF + I VED N+ QTL+FSAT P ++H++ FL I L
Sbjct: 308 LDMGFEPQIRHI---VEDCDMPPVNERQTLMFSATFPRDIQHLARDFLND---YIFLSVG 361
Query: 329 EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG--- 385
S N+ VL + + D++ + GG T+IF ETK A QL D L
Sbjct: 362 RVGSTSENITQKVLYVDDMDKKSALLDLLSS-TKGGLTLIFVETKRMADQLTDFLIMQNI 420
Query: 386 -ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444
A A+HGD Q +RE L F+SG LVAT VAARGLDI +V L+I + P D++ Y+
Sbjct: 421 RATAIHGDRTQMERERALGAFKSGTADVLVATAVAARGLDIPNVTLVINYDLPGDIDDYV 480
Query: 445 HRSGRTGRAG 454
HR GRTGRAG
Sbjct: 481 HRIGRTGRAG 490
>gi|418419638|ref|ZP_12992821.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium abscessus
subsp. bolletii BD]
gi|364001268|gb|EHM22464.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium abscessus
subsp. bolletii BD]
Length = 598
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 194/334 (58%), Gaps = 25/334 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE--SLTNGPTKASKKTGYG 185
G E+ IQA T +L GSD+VG A+TG GKT AF +PIL LT+ T+A
Sbjct: 42 GYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAIPILSKIDLTSKDTQA------- 94
Query: 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
LVL PTRELA QV E F YG + L +YGG Y Q LK+G VV+GT
Sbjct: 95 -----LVLAPTRELALQVSEAFGRYGAHMPKLNVLPIYGGQSYVVQLAGLKRGAQVVVGT 149
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304
PGR+ DH+ERG +DLS L + VLDEADEML MGF EDVE IL + +V LFSAT+
Sbjct: 150 PGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILADTPEYKQVA--LFSATM 207
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ ++ K+L +++ + K + N+ + + + + I+ +
Sbjct: 208 PTTIRRLTKKYLHD---PVEIKIDAKTSTAENITQRFIQVAGPRKMDALTRILEVETFEA 264
Query: 365 RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK++ ++AD L A A++GDI QSQRE T+ ++G LVAT+VAA
Sbjct: 265 -MIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVATDVAA 323
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 324 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAG 357
>gi|345009150|ref|YP_004811504.1| DEAD/DEAH box helicase [Streptomyces violaceusniger Tu 4113]
gi|344035499|gb|AEM81224.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
Tu 4113]
Length = 859
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 203/362 (56%), Gaps = 17/362 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI S FPIQ MT + L G+D++G+A+TG GKTL F LP+LE + A +
Sbjct: 49 EALEAVGIMSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVV---VSADVE 105
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G + AP LV++PTREL +QV D G + +YGG Y Q LK
Sbjct: 106 AGRAKPEQLTDAPQALVVVPTRELCQQVTNDLLTAGKVRAVRVLSIYGGRAYEPQVEALK 165
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DVV+GTPGR+ D + + LSS+K VLDEADEML +GF+ DVE I+ + K
Sbjct: 166 KGVDVVVGTPGRLLDLAGQKKLRLSSVKSLVLDEADEMLDLGFLPDVEKIIQLL--PAKR 223
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ +++ N+ V S + +V+
Sbjct: 224 QTMLFSATMPGQVISLARRYMSQPTHIRATAPDDEGATVANITQHVFRAHSMDKPEVVAR 283
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
+++ G +IF TK +A+ +AD L + A+HGD+ Q RE L FR+GK
Sbjct: 284 VLQA-DGRGLVMIFCRTKRTAADIADQLARRGFASGAVHGDLGQGAREQALRAFRNGKVD 342
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPA 471
LV T+VAARG+D+ V +I + P D + Y+HR GRTGRAG IT V IP
Sbjct: 343 VLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGI-AITLVDWDDIPR 401
Query: 472 FK 473
++
Sbjct: 402 WQ 403
>gi|188532510|ref|YP_001906307.1| ATP-dependent RNA helicase DeaD [Erwinia tasmaniensis Et1/99]
gi|188027552|emb|CAO95399.1| Cold-shock DEAD-box protein A [Erwinia tasmaniensis Et1/99]
Length = 636
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 141/348 (40%), Positives = 203/348 (58%), Gaps = 30/348 (8%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
++ L E L G PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 16 LNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNID--P 73
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
T +AP +LVL PTRELA QV E DF + GL LYGG Y Q
Sbjct: 74 TV--------KAPQILVLAPTRELAVQVAEAVTDFSKH--MRGLNVVALYGGQRYDVQLR 123
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ D
Sbjct: 124 ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDG 183
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K ++ ++++S R + +A +
Sbjct: 184 H--QTALFSATMPEAIRRITKRFMKDPQEV-------RIQSSLTTRPDISQSYWTAYGRK 234
Query: 353 IPDIIRCYSSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFR 406
+ R + IIF TK + ++A+ L + AL+GD+ Q+ RE TL +
Sbjct: 235 TDALTRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 294
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 295 DGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAG 342
>gi|336247347|ref|YP_004591057.1| ATP-dependent RNA helicase DeaD [Enterobacter aerogenes KCTC 2190]
gi|444354540|ref|YP_007390684.1| Cold-shock DEAD-box protein A [Enterobacter aerogenes EA1509E]
gi|334733403|gb|AEG95778.1| ATP-dependent RNA helicase DeaD [Enterobacter aerogenes KCTC 2190]
gi|443905370|emb|CCG33144.1| Cold-shock DEAD-box protein A [Enterobacter aerogenes EA1509E]
Length = 644
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 202/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|239918016|ref|YP_002957574.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
gi|239839223|gb|ACS31020.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
Length = 611
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 136/349 (38%), Positives = 200/349 (57%), Gaps = 12/349 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + E L++KGI FPIQAMT + L G D++G+A+TG GKTL F +P L+
Sbjct: 42 FGVHPAIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQRAI- 100
Query: 174 GPTKAS----KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
GP + + G AP L++ PTRELA QV D L +YGG Y
Sbjct: 101 GPGEPGWDGLEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEP 160
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L++G+++V+GTPGR+ D + + ++ L + VLDEADEML +GF+ DVE +L V
Sbjct: 161 QIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAV 220
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QT+LFSAT+P V ++ +++ ++ ++R +V +
Sbjct: 221 PAVR--QTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDK 278
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+++ ++ GRTIIFT TK +A+++AD L A ALHGD+ Q RE L F
Sbjct: 279 DELVARALQAEGR-GRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAF 337
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
R+GK LVAT+VAARG+D++DV + + P D + Y+HR GRTGRAG
Sbjct: 338 RNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAG 386
>gi|206579682|ref|YP_002236428.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae 342]
gi|288933410|ref|YP_003437469.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
gi|206568740|gb|ACI10516.1| cold-shock DEAD box protein A [Klebsiella pneumoniae 342]
gi|288888139|gb|ADC56457.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
Length = 643
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 202/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|365869382|ref|ZP_09408929.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|414582556|ref|ZP_11439696.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1215]
gi|420876743|ref|ZP_15340115.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0304]
gi|420881759|ref|ZP_15345123.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0421]
gi|420888066|ref|ZP_15351420.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0422]
gi|420893793|ref|ZP_15357135.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0708]
gi|420898622|ref|ZP_15361958.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0817]
gi|420903935|ref|ZP_15367256.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1212]
gi|420970934|ref|ZP_15434131.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0921]
gi|421048242|ref|ZP_15511238.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|363998839|gb|EHM20045.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|392090420|gb|EIU16233.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0304]
gi|392090814|gb|EIU16625.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0421]
gi|392092626|gb|EIU18431.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0422]
gi|392102383|gb|EIU28170.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0708]
gi|392107863|gb|EIU33645.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0817]
gi|392109193|gb|EIU34971.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1212]
gi|392117708|gb|EIU43476.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1215]
gi|392171906|gb|EIU97579.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0921]
gi|392242407|gb|EIV67894.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
CCUG 48898]
Length = 598
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 194/334 (58%), Gaps = 25/334 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE--SLTNGPTKASKKTGYG 185
G E+ IQA T +L GSD+VG A+TG GKT AF +PIL LT+ T+A
Sbjct: 42 GYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAIPILSKIDLTSKDTQA------- 94
Query: 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
LVL PTRELA QV E F YG + L +YGG Y Q LK+G VV+GT
Sbjct: 95 -----LVLAPTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYVVQLAGLKRGAQVVVGT 149
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304
PGR+ DH+ERG +DLS L + VLDEADEML MGF EDVE IL + +V LFSAT+
Sbjct: 150 PGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILADTPEYKQVA--LFSATM 207
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ ++ K+L +++ + K + N+ + + + + I+ +
Sbjct: 208 PTTIRRLTKKYLHD---PVEIKIDAKTSTAENITQRFIQVAGPRKMDALTRILEVETFEA 264
Query: 365 RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK++ ++AD L A A++GDI QSQRE T+ ++G LVAT+VAA
Sbjct: 265 -MIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVATDVAA 323
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 324 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAG 357
>gi|259907048|ref|YP_002647404.1| ATP-dependent RNA helicase DeaD [Erwinia pyrifoliae Ep1/96]
gi|387869761|ref|YP_005801131.1| cold-shock DEAD box protein A [Erwinia pyrifoliae DSM 12163]
gi|224962670|emb|CAX54125.1| Cold-shock DEAD-box protein A [Erwinia pyrifoliae Ep1/96]
gi|283476844|emb|CAY72682.1| Cold-shock DEAD box protein A [Erwinia pyrifoliae DSM 12163]
Length = 638
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 201/346 (58%), Gaps = 26/346 (7%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
++ L E L G PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
T +AP +LVL PTRELA QV E D GL LYGG Y Q L
Sbjct: 71 TV--------KAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G VV+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ D +
Sbjct: 123 RQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R + +A +
Sbjct: 182 -QTALFSATMPEAIRRITKRFMKDPQEV-------RIQSSLTTRPDISQSYWTAYGRKTD 233
Query: 355 DIIRCYSSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ R + IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G
Sbjct: 234 ALTRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 293
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 294 RLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAG 339
>gi|441523228|ref|ZP_21004858.1| ATP-dependent RNA helicase DeaD [Gordonia sihwensis NBRC 108236]
gi|441457193|dbj|GAC62819.1| ATP-dependent RNA helicase DeaD [Gordonia sihwensis NBRC 108236]
Length = 596
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 137/336 (40%), Positives = 192/336 (57%), Gaps = 21/336 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E+ PIQA T +++G D+VG A+TG GKT AF LPIL L
Sbjct: 33 LDDVGYETPSPIQAATIPPLMEGRDVVGLAQTGTGKTAAFALPILTRLDTS--------- 83
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R P LVL PTRELA QV E F Y + + +YGG Y Q L++G V++
Sbjct: 84 -ARKPQALVLAPTRELALQVAEAFGSYSTYLPEVKVLPIYGGQSYGIQLSGLRRGAQVIV 142
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+++G +DLS L+F VLDEADEML MGF EDVE IL D +V LFSA
Sbjct: 143 GTPGRVIDHLDKGTLDLSQLEFLVLDEADEMLTMGFAEDVERILADTPDQKQVA--LFSA 200
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ + ++ K+L + + ++ K + N+ L S + + ++
Sbjct: 201 TMPAAIGRLARKYLNNPQ---EVTVKNKTATAQNITQKYLQVSHQRKLDALTRVLEVEPF 257
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G I+F TK + +LA+ L A A++GD+ Q+QRE T+ + G LVAT+V
Sbjct: 258 DG-MIVFVRTKSATEELAEKLRARGLSAMAINGDMVQAQRERTINQLKDGSLDILVATDV 316
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARGLD++ + ++ + P DVE+Y+HR GRTGRAG
Sbjct: 317 AARGLDVDRISHVVNYDIPHDVESYVHRIGRTGRAG 352
>gi|397678974|ref|YP_006520509.1| cold-shock DEAD box protein A-like protein [Mycobacterium
massiliense str. GO 06]
gi|418249081|ref|ZP_12875403.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
47J26]
gi|419711589|ref|ZP_14239052.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M93]
gi|420930546|ref|ZP_15393822.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-151-0930]
gi|420936028|ref|ZP_15399297.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-152-0914]
gi|420940798|ref|ZP_15404060.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-153-0915]
gi|420946105|ref|ZP_15409358.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-154-0310]
gi|420951063|ref|ZP_15414309.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0626]
gi|420955234|ref|ZP_15418473.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0107]
gi|420960958|ref|ZP_15424186.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-1231]
gi|420991202|ref|ZP_15454354.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0307]
gi|420997038|ref|ZP_15460178.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-R]
gi|421001472|ref|ZP_15464602.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-S]
gi|353450736|gb|EHB99130.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
47J26]
gi|382938911|gb|EIC63240.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M93]
gi|392139564|gb|EIU65296.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-151-0930]
gi|392141543|gb|EIU67268.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-152-0914]
gi|392151585|gb|EIU77293.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-153-0915]
gi|392159313|gb|EIU85009.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-154-0310]
gi|392160840|gb|EIU86531.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0626]
gi|392189282|gb|EIV14916.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-R]
gi|392190213|gb|EIV15845.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0307]
gi|392200290|gb|EIV25896.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-S]
gi|392254023|gb|EIV79490.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-1231]
gi|392255762|gb|EIV81223.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0107]
gi|395457239|gb|AFN62902.1| Cold-shock DEAD box protein A-like protein [Mycobacterium
massiliense str. GO 06]
Length = 598
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 194/334 (58%), Gaps = 25/334 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE--SLTNGPTKASKKTGYG 185
G E+ IQA T +L GSD+VG A+TG GKT AF +PIL LT+ T+A
Sbjct: 42 GYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAIPILSKIDLTSKDTQA------- 94
Query: 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
LVL PTRELA QV E F YG + L +YGG Y Q LK+G VV+GT
Sbjct: 95 -----LVLAPTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYVVQLAGLKRGAQVVVGT 149
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304
PGR+ DH+ERG +DLS L + VLDEADEML MGF EDVE IL + +V LFSAT+
Sbjct: 150 PGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILADTPEYKQVA--LFSATM 207
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ ++ K+L +++ + K + N+ + + + + I+ +
Sbjct: 208 PTTIRRLTKKYLHD---PVEIKIDAKTSTAENITQRFIQVAGPRKMDALTRILEVETFEA 264
Query: 365 RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK++ ++AD L A A++GDI QSQRE T+ ++G LVAT+VAA
Sbjct: 265 -MIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVATDVAA 323
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 324 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAG 357
>gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
ATCC 19977]
gi|419716620|ref|ZP_14244016.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M94]
gi|420863361|ref|ZP_15326754.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0303]
gi|420867758|ref|ZP_15331143.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RA]
gi|420872190|ref|ZP_15335570.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RB]
gi|420908973|ref|ZP_15372286.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-R]
gi|420915356|ref|ZP_15378661.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-S]
gi|420919746|ref|ZP_15383044.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-S]
gi|420926243|ref|ZP_15389528.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-1108]
gi|420965711|ref|ZP_15428925.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0810-R]
gi|420976589|ref|ZP_15439771.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0212]
gi|420981969|ref|ZP_15445139.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-R]
gi|420986517|ref|ZP_15449678.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0206]
gi|421006515|ref|ZP_15469630.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0119-R]
gi|421011836|ref|ZP_15474929.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-R]
gi|421016756|ref|ZP_15479823.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-S]
gi|421022668|ref|ZP_15485716.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0731]
gi|421028023|ref|ZP_15491060.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-R]
gi|421033882|ref|ZP_15496904.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-S]
gi|421039073|ref|ZP_15502084.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-R]
gi|421042545|ref|ZP_15505550.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-S]
gi|169240461|emb|CAM61489.1| Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA
helicase DEAD homolog) [Mycobacterium abscessus]
gi|382940906|gb|EIC65228.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M94]
gi|392073161|gb|EIT99001.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RA]
gi|392073881|gb|EIT99719.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0303]
gi|392076379|gb|EIU02212.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RB]
gi|392121347|gb|EIU47112.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-R]
gi|392123040|gb|EIU48802.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-S]
gi|392133751|gb|EIU59493.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-S]
gi|392138651|gb|EIU64384.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-1108]
gi|392170848|gb|EIU96525.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0212]
gi|392173987|gb|EIU99653.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-R]
gi|392187934|gb|EIV13573.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0206]
gi|392202267|gb|EIV27864.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0119-R]
gi|392210240|gb|EIV35810.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-R]
gi|392215365|gb|EIV40913.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0731]
gi|392215856|gb|EIV41403.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-S]
gi|392227287|gb|EIV52801.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-R]
gi|392230423|gb|EIV55933.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-S]
gi|392231929|gb|EIV57433.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-R]
gi|392241611|gb|EIV67099.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-S]
gi|392257699|gb|EIV83148.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0810-R]
Length = 598
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 194/334 (58%), Gaps = 25/334 (7%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE--SLTNGPTKASKKTGYG 185
G E+ IQA T +L GSD+VG A+TG GKT AF +PIL LT+ T+A
Sbjct: 42 GYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAIPILSKIDLTSKDTQA------- 94
Query: 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
LVL PTRELA QV E F YG + L +YGG Y Q LK+G VV+GT
Sbjct: 95 -----LVLAPTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYVVQLAGLKRGAQVVVGT 149
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304
PGR+ DH+ERG +DLS L + VLDEADEML MGF EDVE IL + +V LFSAT+
Sbjct: 150 PGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILADTPEYKQVA--LFSATM 207
Query: 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
P+ ++ ++ K+L +++ + K + N+ + + + + I+ +
Sbjct: 208 PTTIRRLTKKYLHD---PVEIKIDAKTSTAENITQRFIQVAGPRKMDALTRILEVETFEA 264
Query: 365 RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
I+F TK++ ++AD L A A++GDI QSQRE T+ ++G LVAT+VAA
Sbjct: 265 -MIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVATDVAA 323
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 324 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAG 357
>gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
Length = 713
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 152/388 (39%), Positives = 221/388 (56%), Gaps = 28/388 (7%)
Query: 73 EPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESL 132
EP ++ +E + + +AKV PE ++ ++ E + P + + + +K G E
Sbjct: 43 EPQDVTNEAVESENAEAKV-PE---KDNQQSEEQQP-SFDGLGLPENVLAAVKKVGFEVP 97
Query: 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192
PIQA T ++++G D+VG A+TG GKT AF LPIL + SK R P LV
Sbjct: 98 SPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSRI-----DVSK-----RHPQALV 147
Query: 193 LLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDH 251
L PTRELA QV E F + +G + +YGG Y Q L++G +V+GTPGR+ DH
Sbjct: 148 LAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRRGAHIVVGTPGRVIDH 207
Query: 252 IERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA-NKVQTLLFSATLPSWVKH 310
+E+G++D+S L+F VLDEADEML MGF EDVE IL ED + Q LFSAT+PS ++
Sbjct: 208 LEKGSLDISELRFMVLDEADEMLNMGFQEDVERIL---EDTPSDKQVALFSATMPSGIRR 264
Query: 311 ISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFT 370
+S ++L SD + I + + + S N+ L S + + I+ I+F
Sbjct: 265 LSKQYL-SDPREITVKATQ--RTSENIEQDYLLVSHRDKLDALTRILEITEFEA-MIMFV 320
Query: 371 ETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
TK +LA+ L A A++GDI Q+ RE T+ + G+ LVAT+VAARGLD++
Sbjct: 321 RTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVATDVAARGLDVD 380
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ + + P D E+Y+HR GRTGRAG
Sbjct: 381 RITHVFNYDIPHDTESYVHRIGRTGRAG 408
>gi|421919438|ref|ZP_16348940.1| Cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|410118289|emb|CCM91565.1| Cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
Length = 643
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 202/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|281415806|ref|ZP_06247548.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
Length = 597
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/349 (38%), Positives = 200/349 (57%), Gaps = 12/349 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + E L++KGI FPIQAMT + L G D++G+A+TG GKTL F +P L+
Sbjct: 42 FGVHPAIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQRAI- 100
Query: 174 GPTKAS----KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
GP + + G AP L++ PTRELA QV D L +YGG Y
Sbjct: 101 GPGEPGWDGLEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEP 160
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L++G+++V+GTPGR+ D + + ++ L + VLDEADEML +GF+ DVE +L V
Sbjct: 161 QIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAV 220
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QT+LFSAT+P V ++ +++ ++ ++R +V +
Sbjct: 221 PAVR--QTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDK 278
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+++ ++ GRTIIFT TK +A+++AD L A ALHGD+ Q RE L F
Sbjct: 279 DELVARALQAEGR-GRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAF 337
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
R+GK LVAT+VAARG+D++DV + + P D + Y+HR GRTGRAG
Sbjct: 338 RNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAG 386
>gi|398792258|ref|ZP_10552920.1| DNA/RNA helicase, superfamily II [Pantoea sp. YR343]
gi|398213572|gb|EJN00165.1| DNA/RNA helicase, superfamily II [Pantoea sp. YR343]
Length = 636
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/340 (40%), Positives = 200/340 (58%), Gaps = 26/340 (7%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L G PIQA +L G D++G A+TG GKT AF LP+L ++ PT
Sbjct: 19 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNNID--PTV---- 72
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
+AP +LVL PTRELA QV E + + G+ LYGG Y Q L++G V
Sbjct: 73 ----KAPQILVLAPTRELAVQVAEAVTEFSKHMRGINVVALYGGQRYDVQLRALRQGPQV 128
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ D + QT LF
Sbjct: 129 VVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGH--QTALF 186
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ I+ +F+K ++ ++++S R + +A + ++R
Sbjct: 187 SATMPEAIRRITKRFMKDPQEV-------RIQSSLTTRPDISQSYWTAYGRKTDALVRFL 239
Query: 361 SSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G+ L+
Sbjct: 240 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 299
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 300 ATDVAARGLDVERISLVVNFDIPMDAESYVHRIGRTGRAG 339
>gi|421911614|ref|ZP_16341367.1| Cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410114518|emb|CCM83992.1| Cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
Length = 647
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 202/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|425074694|ref|ZP_18477797.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425085330|ref|ZP_18488423.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405594897|gb|EKB68287.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405607362|gb|EKB80331.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
Length = 632
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 202/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|152972086|ref|YP_001337232.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|378980866|ref|YP_005229007.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386036718|ref|YP_005956631.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae KCTC 2242]
gi|402778831|ref|YP_006634377.1| cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|419972232|ref|ZP_14487661.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419978227|ref|ZP_14493524.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419984967|ref|ZP_14500111.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419989183|ref|ZP_14504160.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419995311|ref|ZP_14510118.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420001328|ref|ZP_14515984.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420007134|ref|ZP_14521629.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420013015|ref|ZP_14527327.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420018738|ref|ZP_14532934.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420026290|ref|ZP_14540293.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420029664|ref|ZP_14543493.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420037498|ref|ZP_14551152.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420041292|ref|ZP_14554789.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420047454|ref|ZP_14560771.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420052763|ref|ZP_14565943.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420060310|ref|ZP_14573311.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420064910|ref|ZP_14577718.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420072124|ref|ZP_14584765.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420076856|ref|ZP_14589325.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420081955|ref|ZP_14594258.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|424832555|ref|ZP_18257283.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|424931609|ref|ZP_18349981.1| Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
[Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|425083353|ref|ZP_18486450.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425093477|ref|ZP_18496561.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428149569|ref|ZP_18997383.1| Cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428939370|ref|ZP_19012480.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae VA360]
gi|449059561|ref|ZP_21737255.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae hvKP1]
gi|150956935|gb|ABR78965.1| cold-shock DeaD box ATP-dependent RNA helicase [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|339763846|gb|AEK00067.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae KCTC 2242]
gi|364520277|gb|AEW63405.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397352060|gb|EJJ45141.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397352510|gb|EJJ45589.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397353285|gb|EJJ46360.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397368064|gb|EJJ60672.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397370015|gb|EJJ62607.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397372219|gb|EJJ64715.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397380926|gb|EJJ73104.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397385246|gb|EJJ77350.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397389981|gb|EJJ81903.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397395420|gb|EJJ87126.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397402875|gb|EJJ94470.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397405429|gb|EJJ96892.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397417240|gb|EJK08409.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397418899|gb|EJK10053.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397424895|gb|EJK15783.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397432748|gb|EJK23405.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397434171|gb|EJK24811.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397439610|gb|EJK30049.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397446812|gb|EJK37020.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397452682|gb|EJK42749.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|402539782|gb|AFQ63931.1| Cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|405598554|gb|EKB71756.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405611022|gb|EKB83811.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407805796|gb|EKF77047.1| Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
[Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|414709998|emb|CCN31702.1| cold-shock DEAD box protein A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426304059|gb|EKV66212.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae VA360]
gi|427540329|emb|CCM93521.1| Cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|448874725|gb|EMB09758.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae hvKP1]
Length = 643
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 202/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|377574212|ref|ZP_09803243.1| putative DEAD-box RNA helicase [Mobilicoccus pelagius NBRC 104925]
gi|377537015|dbj|GAB48408.1| putative DEAD-box RNA helicase [Mobilicoccus pelagius NBRC 104925]
Length = 544
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 219/391 (56%), Gaps = 17/391 (4%)
Query: 68 SSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSK 127
S + EP S + + PEA VE+ HP+ V+ L
Sbjct: 14 SDAVVEPTIDASAQAAGADTTIEAHPEAVVEKTFADFDVHPDIVA----------ALADA 63
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
GI + FPIQAMT + L G D++G+A+TG GKTL F +P+L+ + + + +
Sbjct: 64 GIVTPFPIQAMTLPVALGGYDIIGQAKTGTGKTLGFGVPLLDRVVAPGDEGFEDLPHPGR 123
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
P LV+ PTRELA QV D G+ +YGG + Q L+KG++VV+GTPGR
Sbjct: 124 PQGLVVAPTRELANQVAGDLTRAASRRGIRVTTIYGGRAFEPQIEALQKGVEVVVGTPGR 183
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ D +++G+++L +++ VLDEADEML +GF+ DVE +L + + QT+LFSAT+P
Sbjct: 184 LIDLMQQGHLNLHAIRTLVLDEADEMLDLGFLPDVEKLLAQTPASR--QTMLFSATMPGA 241
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
V ++ +++ + +++ + + V + + +++ I++ G TI
Sbjct: 242 VVTLARRYMTRPTHIRAISDDDEGQTVAAIDQYVYRAHAMDKVEMVARILQAEGR-GLTI 300
Query: 368 IFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
IF+ TK +A+++AD L A ++HGD+ Q RE L FR+GK LVAT+VAARG+
Sbjct: 301 IFSRTKRTAAKVADELADRGFAAASIHGDLGQGAREQALRAFRNGKVDILVATDVAARGI 360
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
D+ +V +I + P D + Y+HR+GRTGRAG
Sbjct: 361 DVENVTHVINYQCPEDEKTYLHRTGRTGRAG 391
>gi|424851819|ref|ZP_18276216.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
protein, partial [Rhodococcus opacus PD630]
gi|356666484|gb|EHI46555.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
protein, partial [Rhodococcus opacus PD630]
Length = 526
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 198/340 (58%), Gaps = 16/340 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L +++G T + G
Sbjct: 103 LDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRISSGTTGTAALDG 162
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
RA LV++PTREL QV +D + + G L +YGG PY Q L+KG
Sbjct: 163 TPRA---LVIVPTRELCIQVTKDLEGAAKYLKGEKNKLEVLAIYGGRPYETQIATLQKGA 219
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D +G++ L ++ VLDEADEML +GF+ D+E ILG V D K QT+
Sbjct: 220 DVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILGMVPD--KRQTM 277
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ FL ++ +HI + +++++ +++
Sbjct: 278 LFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYR-AHALDKAEMVARVLQ 336
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T+IFT TK +A ++AD L ++HGD+ Q RE L FR+GK LV
Sbjct: 337 ADGRGA-TMIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFRTGKIDVLV 395
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG
Sbjct: 396 ATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAG 435
>gi|378768793|ref|YP_005197267.1| ATP-dependent RNA helicase DeaD [Pantoea ananatis LMG 5342]
gi|386018183|ref|YP_005936486.1| cold-shock DEAD box protein A DeaD [Pantoea ananatis AJ13355]
gi|386080899|ref|YP_005994424.1| cold-shock DEAD box protein A [Pantoea ananatis PA13]
gi|327396268|dbj|BAK13690.1| cold-shock DEAD box protein A DeaD [Pantoea ananatis AJ13355]
gi|354990080|gb|AER34204.1| cold-shock DEAD box protein A [Pantoea ananatis PA13]
gi|365188280|emb|CCF11230.1| ATP-dependent RNA helicase DeaD [Pantoea ananatis LMG 5342]
Length = 630
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 203/346 (58%), Gaps = 26/346 (7%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
++ L E L G PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
T +AP +LVL PTRELA QV E + + GL LYGG Y Q L
Sbjct: 71 TV--------KAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G VV+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R + +A +
Sbjct: 182 -QTALFSATMPEAIRRITKRFMKDPQEV-------RIQSSMTTRPDISQSYWTAYGRKTD 233
Query: 355 DIIRCYSSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
++R + IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G
Sbjct: 234 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDG 293
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 294 RLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAG 339
>gi|289705155|ref|ZP_06501559.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus
SK58]
gi|289558183|gb|EFD51470.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus
SK58]
Length = 470
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/349 (39%), Positives = 201/349 (57%), Gaps = 12/349 (3%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + E L++KGI FPIQAMT + L G D++G+A+TG GKTL F +P L+
Sbjct: 42 FGVHPKIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQRAI- 100
Query: 174 GPTK----ASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
GP + A + G AP L++ PTRELA QV D L +YGG Y
Sbjct: 101 GPGEPGWDALEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEP 160
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L++GI++V+GTPGR+ D + + ++ L + VLDEADEML +GF+ DVE +L V
Sbjct: 161 QIEELQRGIEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAV 220
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QT+LFSAT+P V ++ +++ ++ ++R +V +
Sbjct: 221 PAVR--QTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDK 278
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+++ ++ GRTIIFT TK +A+++AD L A ALHGD+ Q RE L F
Sbjct: 279 DELVARALQAEGR-GRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAF 337
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
R+GK LVAT+VAARG+D++DV + + P D + Y+HR GRTGRAG
Sbjct: 338 RNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAG 386
>gi|440713990|ref|ZP_20894578.1| cold-shock DEAD box protein A [Rhodopirellula baltica SWK14]
gi|436441186|gb|ELP34452.1| cold-shock DEAD box protein A [Rhodopirellula baltica SWK14]
Length = 895
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 198/340 (58%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+++ + + G + PIQA +LDG D++ +++TG GKT AF LPIL S
Sbjct: 279 VQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPIL----------S 328
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGI 238
+ R P VLVL PTRELA QV F YG + G +YGG Y Q +L++G+
Sbjct: 329 RVDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGV 388
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DH++RG +DL SL VLDEADEML MGF+EDV+ +L K + +V
Sbjct: 389 QVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQV--A 446
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSATLP ++ I+ ++L +D I + K + +VR L S + + I+
Sbjct: 447 LFSATLPKPIRKIADEYL-NDPARITI--KSKTITAASVRQRALFVSPRDKIDALTRILE 503
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ G I+FT+TK+S +A+ L A AL+GD+ Q RE T+ + G+ LV
Sbjct: 504 VEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLV 562
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD+ + + + P D E+Y+HR GRTGRAG
Sbjct: 563 ATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAG 602
>gi|300783470|ref|YP_003763761.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
gi|384146701|ref|YP_005529517.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
gi|399535355|ref|YP_006548017.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
gi|299792984|gb|ADJ43359.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
gi|340524855|gb|AEK40060.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
gi|398316125|gb|AFO75072.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
Length = 500
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 207/358 (57%), Gaps = 18/358 (5%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ PL L ++G+ FPIQA T L G D++GR RTG GKT FVLP+L L GP
Sbjct: 9 LPTPLVAALATQGVTEPFPIQAATLPHTLAGRDVLGRGRTGSGKTYGFVLPLLARLAAGP 68
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
T+ +K G RA L+L PTRELA Q+ +GL + ++GG + Q +L+
Sbjct: 69 TR--RKPGRPRA---LILAPTRELATQIEASILPLAKPLGLKTTTIFGGVSANPQITRLR 123
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
G+D+V+ PGR+ DH+ G++ L +++ VLDEAD M +GF+ +V I+ + ++
Sbjct: 124 DGVDIVVACPGRLADHMRSGHVKLDAIEITVLDEADHMADLGFLPEVRRIMDQTP--SRG 181
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
Q +LFSATL + V + +F+ + V + + ST + H VL + R +P
Sbjct: 182 QRMLFSATLDNGVDVLVKRFM--NDPITHSVDSAQSPVST-MEHHVLHLEETHR---LPV 235
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
++ ++ GRT++FT TK A L L A LHG++ Q+ R L F SG
Sbjct: 236 LVDLTAAPGRTLVFTRTKSRAKALTRKLVASGVPAVELHGNLGQNARTRNLEAFSSGTAK 295
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVI 469
TLVAT++AARG+ ++DV+L+I +PP + +AY+HRSGRT RAG + +T ++D+ +
Sbjct: 296 TLVATDIAARGIHVDDVRLVIHADPPVEHKAYLHRSGRTARAGA-SGTVVTLMTDAQV 352
>gi|410672237|ref|YP_006924608.1| DEAD/DEAH box helicase domain-containing protein [Methanolobus
psychrophilus R15]
gi|409171365|gb|AFV25240.1| DEAD/DEAH box helicase domain-containing protein [Methanolobus
psychrophilus R15]
Length = 431
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/349 (38%), Positives = 197/349 (56%), Gaps = 24/349 (6%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S+ +S + +K G E PIQA ++++G D++G+A+TG GKT AF +P LE +
Sbjct: 7 SQLNLSQSIINAIKDIGYEEPTPIQAQAIPLIMEGKDVIGQAQTGTGKTAAFGIPALELV 66
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
VLVL PTRELA QV ++ L +YGG Q
Sbjct: 67 DPEFNDVQ----------VLVLCPTRELANQVADELTKLSAYQKLRILPIYGGQSLDRQI 116
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L++G+ ++IGTPGR+ DHIER ++L ++ VLDEADEML MGF ED+ELIL KV D
Sbjct: 117 KALRRGVHIIIGTPGRVMDHIERKTLNLENVAMVVLDEADEMLDMGFREDIELILTKVPD 176
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDK--KTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QT+LFSAT+P+ + ++ +F + + KTI K NV +
Sbjct: 177 DR--QTILFSATMPALIMKLTKRFQRDPQLVKTI-----HKKVTVPNVEQSYFEVKFHTK 229
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGF 405
+V+ +I Y +++F TK + +L D L A LHGD++Q QRE +A F
Sbjct: 230 PEVLCRLIDIYDVKS-SLVFCNTKRAVDELVDTLKTRGYLADGLHGDMKQQQRERVMASF 288
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
R G TLVAT+VAARG+D+ +++++ + P+D E+Y+HR GRTGRAG
Sbjct: 289 RKGDIETLVATDVAARGIDVENIEVVFNFDLPQDEESYVHRIGRTGRAG 337
>gi|421610904|ref|ZP_16052069.1| cold-shock deAd box protein a [Rhodopirellula baltica SH28]
gi|408498358|gb|EKK02852.1| cold-shock deAd box protein a [Rhodopirellula baltica SH28]
Length = 931
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 198/340 (58%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+++ + + G + PIQA +LDG D++ +++TG GKT AF LPIL S
Sbjct: 315 VQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPIL----------S 364
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGI 238
+ R P VLVL PTRELA QV F YG + G +YGG Y Q +L++G+
Sbjct: 365 RVDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGV 424
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DH++RG +DL SL VLDEADEML MGF+EDV+ +L K + +V
Sbjct: 425 QVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQV--A 482
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSATLP ++ I+ ++L +D I + K + +VR L S + + I+
Sbjct: 483 LFSATLPKPIRKIADEYL-NDPARITI--KSKTITAASVRQRALFVSPRDKIDALTRILE 539
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ G I+FT+TK+S +A+ L A AL+GD+ Q RE T+ + G+ LV
Sbjct: 540 VEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLV 598
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD+ + + + P D E+Y+HR GRTGRAG
Sbjct: 599 ATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAG 638
>gi|291616016|ref|YP_003518758.1| DeaD [Pantoea ananatis LMG 20103]
gi|291151046|gb|ADD75630.1| DeaD [Pantoea ananatis LMG 20103]
Length = 633
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 203/346 (58%), Gaps = 26/346 (7%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
++ L E L G PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 16 LNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNID--P 73
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
T +AP +LVL PTRELA QV E + + GL LYGG Y Q L
Sbjct: 74 TV--------KAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRAL 125
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G VV+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 126 RQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 184
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R + +A +
Sbjct: 185 -QTALFSATMPEAIRRITKRFMKDPQEV-------RIQSSMTTRPDISQSYWTAYGRKTD 236
Query: 355 DIIRCYSSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
++R + IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G
Sbjct: 237 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDG 296
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 297 RLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAG 342
>gi|428932320|ref|ZP_19005900.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae JHCK1]
gi|426307206|gb|EKV69292.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae JHCK1]
Length = 643
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSSG------------------GRTIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMSKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|32475237|ref|NP_868231.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
gi|32445778|emb|CAD78509.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
Length = 931
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 198/340 (58%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+++ + + G + PIQA +LDG D++ +++TG GKT AF LPIL S
Sbjct: 315 VQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPIL----------S 364
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGI 238
+ R P VLVL PTRELA QV F YG + G +YGG Y Q +L++G+
Sbjct: 365 RVDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGV 424
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DH++RG +DL SL VLDEADEML MGF+EDV+ +L K + +V
Sbjct: 425 QVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQV--A 482
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSATLP ++ I+ ++L +D I + K + +VR L S + + I+
Sbjct: 483 LFSATLPKPIRKIADEYL-NDPARITI--KSKTITAASVRQRALFVSPRDKIDALTRILE 539
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ G I+FT+TK+S +A+ L A AL+GD+ Q RE T+ + G+ LV
Sbjct: 540 VEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLV 598
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD+ + + + P D E+Y+HR GRTGRAG
Sbjct: 599 ATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAG 638
>gi|260596208|ref|YP_003208779.1| ATP-dependent RNA helicase DeaD [Cronobacter turicensis z3032]
gi|260215385|emb|CBA27415.1| Cold-shock DEAD box protein A [Cronobacter turicensis z3032]
Length = 638
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 201/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++ +
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHNIDDTL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS+LK VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLESEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|427702212|ref|YP_007045434.1| DNA/RNA helicase [Cyanobium gracile PCC 6307]
gi|427345380|gb|AFY28093.1| DNA/RNA helicase, superfamily II [Cyanobium gracile PCC 6307]
Length = 640
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/351 (40%), Positives = 204/351 (58%), Gaps = 21/351 (5%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
+A + F + L + L + G E PIQ ++ G DLVG+A+TG GKT AF LP+L
Sbjct: 78 SAFAAFGLRQELLDGLAAIGFEEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFGLPLL 137
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPY 227
E L G R P VLVL PTRELA QV E F+ Y + G+ +YGGA +
Sbjct: 138 ERLDPG----------QRTPQVLVLTPTRELAMQVAEAFNSYAARMKGVKVLPVYGGADF 187
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q +L++G+ +V+GTPGR+ DH+ +G +DLS L+ VLDEADEMLRMGF++DV+ +L
Sbjct: 188 RDQIQQLRRGVQIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVKWVLE 247
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
++ + Q +LFSAT+P ++ IS L++ ++ +K +R L +
Sbjct: 248 QL--PAERQVVLFSATMPPEIRRISQNHLRNPA---EITIRQKAADGRRIRQRHLVVNGP 302
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403
+ + + ++ S G IIF TK +A+ L L+GD+ Q+QRE T+
Sbjct: 303 QKLEALERVLEAEGSEG-VIIFARTKAITLTVAESLEQHGYDVAVLNGDVPQTQRERTIE 361
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
R G+ LVAT+VAARGLD++ + L+I + P D EAY+HR GRTGRAG
Sbjct: 362 RLRDGRVNVLVATDVAARGLDVDRIGLVINYDIPFDGEAYVHRIGRTGRAG 412
>gi|422019162|ref|ZP_16365712.1| ATP-dependent RNA helicase DeaD [Providencia alcalifaciens Dmel2]
gi|414103704|gb|EKT65278.1| ATP-dependent RNA helicase DeaD [Providencia alcalifaciens Dmel2]
Length = 655
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 146/364 (40%), Positives = 204/364 (56%), Gaps = 61/364 (16%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S + L G E PIQ ++LDG+D++G A+TG GKT AF LP+L ++
Sbjct: 14 LSASILNALSDLGYEKPSPIQQQCIPLLLDGNDVLGMAQTGSGKTAAFSLPLLHNI---- 69
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
A K AP +LVL PTRELA QV E DF + V + LYGG Y Q
Sbjct: 70 -DADLK-----APQILVLAPTRELAVQVAEAMSDFSKHMNRVNV--VALYGGQRYDVQLR 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH++RG +DLS+LK VLDEADEMLRMGF+EDVE I+ ++
Sbjct: 122 ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAE 181
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K K+ +++AS R
Sbjct: 182 H--QTALFSATMPEPIRRITRRFMKDPKEI-------RIQASITTR-------------- 218
Query: 353 IPDIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y + G R IIF TK + ++A+ L + AL+
Sbjct: 219 -PDIAQSYWTVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALN 277
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRT
Sbjct: 278 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRT 337
Query: 451 GRAG 454
GRAG
Sbjct: 338 GRAG 341
>gi|212709939|ref|ZP_03318067.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM
30120]
gi|212687451|gb|EEB46979.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM
30120]
Length = 657
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 146/364 (40%), Positives = 204/364 (56%), Gaps = 61/364 (16%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S + L G E PIQ ++LDG+D++G A+TG GKT AF LP+L ++
Sbjct: 14 LSASILNALSDLGYEKPSPIQQQCIPLLLDGNDVLGMAQTGSGKTAAFSLPLLHNI---- 69
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
A K AP +LVL PTRELA QV E DF + V + LYGG Y Q
Sbjct: 70 -DADLK-----APQILVLAPTRELAVQVAEAMSDFSKHMNRVNV--VALYGGQRYDVQLR 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH++RG +DLS+LK VLDEADEMLRMGF+EDVE I+ ++
Sbjct: 122 ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAE 181
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K K+ +++AS R
Sbjct: 182 H--QTALFSATMPEPIRRITRRFMKDPKEI-------RIQASITTR-------------- 218
Query: 353 IPDIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y + G R IIF TK + ++A+ L + AL+
Sbjct: 219 -PDIAQSYWTVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALN 277
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRT
Sbjct: 278 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRT 337
Query: 451 GRAG 454
GRAG
Sbjct: 338 GRAG 341
>gi|387824224|ref|YP_005823695.1| cold-shock DEAD-box protein A [Francisella cf. novicida 3523]
gi|328675823|gb|AEB28498.1| Cold-shock DEAD-box protein A [Francisella cf. novicida 3523]
Length = 570
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 204/358 (56%), Gaps = 19/358 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+SE S+ +S + + + + G E+ PIQ +L G D++G+A+TG GKT AF
Sbjct: 2 DSETKKDFSQLGLSQDIVDTVINLGYETPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAF 61
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LP++ ++ ++P VLVL PTRELA QV E F + + L C+Y
Sbjct: 62 ALPLINNI--------DLRSRDKSPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG Y +Q LK+G+ VV+GT GR+ DHIE+G + L +L+ VLDEADEMLRMGF++DV
Sbjct: 114 GGQEYGSQIRALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
+L + + + Q LLFSAT+P+ + I ++L++ K + K K + V +
Sbjct: 174 RFVLSHISE--QCQRLLFSATIPTDIADIIEEYLRNPCK---IQVKAKTKTANTVTQKFI 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
+ + ++ + G IIF +TK S ++AD L A++GD+QQSQR
Sbjct: 229 VIKGFRKIDALDRLLEIEETDG-VIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
E + FR+ K LVAT+V ARG+D+ + +I + P D + Y+HR GRTGRAG E
Sbjct: 288 EYIVDQFRNAKSDILVATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGRE 345
>gi|300856701|ref|YP_003781685.1| RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528]
Length = 525
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/333 (40%), Positives = 199/333 (59%), Gaps = 19/333 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E IQA + ++LDG+D++G+A+TG GKTLAF P+L SK T +
Sbjct: 23 GFEEPSQIQAESIPVILDGNDVIGQAQTGTGKTLAFGAPML----------SKITTKSKH 72
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
S L++ PTRELA QV+++ + +YGG P Q LK+G+DVV+GTPGR
Sbjct: 73 ISALIVTPTRELAIQVNDELSRIAKFKKVALLPIYGGQPIDRQIRSLKRGMDVVVGTPGR 132
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
I DHI+R +DLS+++F +LDEADEML MGF+ED+E I+ K ++++ QTLLFSAT+P
Sbjct: 133 ILDHIKRKTLDLSNIEFLILDEADEMLDMGFIEDIENII-KATNSDR-QTLLFSATMPDQ 190
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
+K +S++++KS+ K+I + N T + R + + I+ I
Sbjct: 191 IKKLSSRYMKSNIKSIKIAKNTLTVDKT--KQYYYEIKQKDRFESLCRILDV-DEPSSAI 247
Query: 368 IFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
IF +TK +L + L +HGD+ Q+QR TL F+ G LVAT+VAARG+
Sbjct: 248 IFCKTKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLEFLVATDVAARGI 307
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
D+ +V +I + P+D E+Y+HR GRTGRA E
Sbjct: 308 DVENVSHVINYDLPQDTESYVHRIGRTGRANKE 340
>gi|359419992|ref|ZP_09211936.1| putative ATP-dependent RNA helicase [Gordonia araii NBRC 100433]
gi|358244096|dbj|GAB10005.1| putative ATP-dependent RNA helicase [Gordonia araii NBRC 100433]
Length = 534
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/374 (37%), Positives = 208/374 (55%), Gaps = 26/374 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L + G F IQ +T + L G DL+G+ARTG GKT F +P+L L PT ++
Sbjct: 38 LIADGKTHTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRLLTAPTSGVRE-- 95
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT----------SCCLYGGAPYHAQEFK 233
P LV++PTREL QV D V G V +T +YGG PY +Q +
Sbjct: 96 LDNTPRALVIVPTRELCLQVTGDLAVAGKGVDVTLTDGTTRPLKVTSIYGGRPYESQIAE 155
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L+ G+DVV+GTPGR+ D ++G++ L ++ VLDEADEML +GF+ D+E IL V A
Sbjct: 156 LQAGVDVVVGTPGRLLDLAQQGHLVLGKVEILVLDEADEMLDLGFLPDIERILAAVPSAR 215
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QT+LFSAT+P + ++ FL N+ +H V + +++++
Sbjct: 216 --QTMLFSATMPGPIVTLARTFLNRPTHIRAEHANDSAVHERTTQH-VYRAHALDKAELV 272
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
+++ G T+IFT TK +A ++AD L A+HGD+ Q RE L+ FR GK
Sbjct: 273 ARVLQADGRGA-TMIFTRTKRTAQKVADDLAERGFAVGAVHGDLGQVAREKALSAFREGK 331
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVI 469
LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG T ++ +++
Sbjct: 332 IDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGR------TGIAITLV 385
Query: 470 PAFKSAAEELLNNS 483
+ EL+NN+
Sbjct: 386 DWDEMHRWELINNA 399
>gi|409392122|ref|ZP_11243740.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia rubripertincta
NBRC 101908]
gi|403197987|dbj|GAB86974.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia rubripertincta
NBRC 101908]
Length = 595
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 194/340 (57%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T ++ G D+VG A+TG GKT AF +PIL L
Sbjct: 34 VRAAITDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRLDTS----- 88
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
R P L+L PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 89 -----ARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGA 143
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+++ +D+S L+F VLDEADEML MGF EDVE IL + D +V
Sbjct: 144 QVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETPDTKQVA-- 201
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++LKS + ++ K + N+ L S + + +
Sbjct: 202 LFSATMPSSIRRLAQRYLKSPQ---EITVKSKTATAQNITQRYLQVSHQRKLDALTRFLE 258
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
I+F TK++ +LA+ L A A++GD+ Q+QRE T+ +SG LV
Sbjct: 259 VEEFDA-MIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERTINQLKSGSIDILV 317
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 318 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 357
>gi|334337081|ref|YP_004542233.1| DEAD/DEAH box helicase [Isoptericola variabilis 225]
gi|334107449|gb|AEG44339.1| DEAD/DEAH box helicase domain protein [Isoptericola variabilis 225]
Length = 607
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 201/346 (58%), Gaps = 21/346 (6%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ PL+ + G + PIQA +L G D+ G A+TG GKT AF LP+L ++
Sbjct: 19 LPAPLQAAVDDLGFTTPSPIQARAIPALLSGRDITGVAQTGTGKTAAFGLPLLAAVDPA- 77
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
AS G+ +A LVL PTRELA QV + + + + GL +YGGAPY Q+ L
Sbjct: 78 --ASVAGGHVQA---LVLTPTRELAIQVADAIESFATHLPGLRVLSVYGGAPYVPQQRAL 132
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+ G+ VV+GTPGR+ DH+ERG + L +++F VLDEADEMLRMGF EDVE I G+ + +
Sbjct: 133 RDGVHVVVGTPGRVMDHMERGALSLDAVRFLVLDEADEMLRMGFAEDVEKIFGQAPE--R 190
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR--HIVLPCSSSARSQV 352
Q LFSAT+P ++ ++ L +++ + + +TNV + ++P S V
Sbjct: 191 RQVALFSATMPPAIRTVAETHLTD---PVEITVSRQSSTTTNVEQSYAIVPFRHKVGSLV 247
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ S TI+FT T+ +A ++ L A + GD+ Q +RE + RSG
Sbjct: 248 ---RVLATSDADATIVFTRTRAAAEEVGAALVERGISASTISGDVAQKERERIVERLRSG 304
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD++ + L++ + PR+ EAY+HR GRTGRAG
Sbjct: 305 ALDVLVATDVAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAG 350
>gi|398798035|ref|ZP_10557337.1| DNA/RNA helicase, superfamily II [Pantoea sp. GM01]
gi|398101283|gb|EJL91506.1| DNA/RNA helicase, superfamily II [Pantoea sp. GM01]
Length = 629
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/340 (40%), Positives = 200/340 (58%), Gaps = 26/340 (7%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L G PIQA +L G D++G A+TG GKT AF LP+L ++ PT
Sbjct: 19 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNNID--PTV---- 72
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
+AP +LVL PTRELA QV E + + G+ LYGG Y Q L++G V
Sbjct: 73 ----KAPQILVLAPTRELAVQVAEAVTEFSKHMRGINVVALYGGQRYDVQLRALRQGPQV 128
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ D + QT LF
Sbjct: 129 VVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGH--QTALF 186
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ I+ +F+K ++ ++++S R + +A + ++R
Sbjct: 187 SATMPEAIRRITKRFMKDPQEV-------RIQSSLTTRPDISQSYWTAYGRKTDALVRFL 239
Query: 361 SSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G+ L+
Sbjct: 240 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 299
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 300 ATDVAARGLDVERISLVVNFDIPMDAESYVHRIGRTGRAG 339
>gi|397668007|ref|YP_006509544.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila]
gi|395131418|emb|CCD09686.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila]
Length = 589
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 206/352 (58%), Gaps = 29/352 (8%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F S L + L+ + PIQA T ++L+G D + A+TG GKT AF LPIL++L
Sbjct: 9 STFNFSSALNKALEDMKFITPSPIQAQTIPLILEGRDAIALAQTGTGKTAAFALPILQNL 68
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV---YGGAVGLTSCCLYGGAPYH 228
+ P ++ + L+L PTRELA QV E F++ Y V + C GG Y
Sbjct: 69 S--PEISTTQA--------LILAPTRELAIQVAEQFELLSKYQRNVTIAVLC--GGQEYG 116
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q +L+ G VV+GTPGRI DHI++G + L++LK +LDEADEMLRMGF+EDVE IL K
Sbjct: 117 RQLKQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEK 176
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSS 346
+ + K Q LFSAT+P ++ I+ +L +D +I++ +M+ +T ++ L S
Sbjct: 177 LPE--KKQMALFSATMPYRIRQIANTYL-NDPASIEI----RMETATVKSIEQRFLFASV 229
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
+ + ++ G I+F TK S ++A+LL A A+HGDI QS RE +
Sbjct: 230 HQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQYGLRAMAIHGDITQSLRERII 288
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
A F+ G LVAT+VAARGLD+ V +I + P D E Y+HR GRTGRAG
Sbjct: 289 AQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAG 340
>gi|146313234|ref|YP_001178308.1| ATP-dependent RNA helicase DeaD [Enterobacter sp. 638]
gi|145320110|gb|ABP62257.1| ATP-dependent RNA helicase CsdA [Enterobacter sp. 638]
Length = 655
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 201/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNNIDP-- 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 --------ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKDPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + + S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQTFWSVHGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ QS RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQSLREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|403718359|ref|ZP_10943282.1| putative ATP-dependent RNA helicase, partial [Kineosphaera limosa
NBRC 100340]
gi|403208541|dbj|GAB97965.1| putative ATP-dependent RNA helicase, partial [Kineosphaera limosa
NBRC 100340]
Length = 818
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 146/384 (38%), Positives = 210/384 (54%), Gaps = 25/384 (6%)
Query: 116 ISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+ VP L +L +GI + FPIQ+ T L G D++GR RTG GKTLAF LP+L L
Sbjct: 403 LGVPDQLVRRLAREGITAPFPIQSATIPDALAGRDVLGRGRTGSGKTLAFGLPMLTRLAG 462
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
G A K P +VL+PTRELA QV + +GL + GG PY Q
Sbjct: 463 GEKAAPK------LPRAVVLVPTRELAMQVSDALQPLVHVLGLRHKLVAGGMPYPPQFEA 516
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L +G+DV+I TPGR+ D IERG L++++ VLDEAD M MGF+EDV L +V
Sbjct: 517 LDRGVDVLIATPGRLADLIERGACSLAAVEIVVLDEADHMAEMGFLEDVTAFLDQVPAGG 576
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
Q LLFSATL + + +L + ++ + T + H +L + + +
Sbjct: 577 --QRLLFSATLDRGIDGLVENYLTD---PVTHSTDDGQASVTTMDHHILLVEPAHKKLIT 631
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGK 409
D+ + GRT++F TK A ++A+ L A ALHG + Q R LA F+SG+
Sbjct: 632 ADVA---NRTGRTVVFVRTKLGADRVAEQLREQGVFAAALHGGLNQGARNRVLAAFKSGE 688
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVI 469
LVAT+VAARG+ ++DV +++Q +PP D + Y+HR+GRT RAG EA +T +
Sbjct: 689 LPVLVATDVAARGIHVDDVSVVLQVDPPADHKDYLHRAGRTARAG-EAGTVVTL----AL 743
Query: 470 PAFKSAAEELLNNSGLSAAELLAK 493
P + E + +GLS + + +
Sbjct: 744 PHQRKLMERIAEQAGLSTSPVRVR 767
>gi|359419518|ref|ZP_09211469.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia araii NBRC
100433]
gi|358244479|dbj|GAB09538.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia araii NBRC
100433]
Length = 569
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/340 (40%), Positives = 190/340 (55%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R L G E+ PIQA T ++ G D+VG A+TG GKT AF +PIL L
Sbjct: 18 VRRALDDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRLDTS----- 72
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
R P LVL PTRELA QV E F Y + L +YGG Y Q L++G
Sbjct: 73 -----ARKPQALVLAPTRELALQVAEAFGRYAAHIPELRVLPIYGGQSYGVQLSGLRRGA 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+++G +D+S L+F VLDEADEML MGF EDVE IL D+ +V
Sbjct: 128 QVIVGTPGRVIDHLDKGTLDISELEFLVLDEADEMLTMGFAEDVERILADTPDSKQVA-- 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ K+L ++ K + N+ L S + + ++
Sbjct: 186 LFSATMPKAIGRLAQKYLHD---PAEVTVKSKTSTAQNITQKYLQVSHQRKLDALTRVLE 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G I+F TK + +LA+ L A A++GD+ Q+QRE T+ + G LV
Sbjct: 243 VEQFDG-MIVFVRTKSATEELAEKLRARGLSAMAINGDMVQAQRERTINQLKEGSLDILV 301
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 302 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 341
>gi|54298236|ref|YP_124605.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
gi|53752021|emb|CAH13447.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
Length = 589
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 206/352 (58%), Gaps = 29/352 (8%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F S L + L+ + PIQA T ++L+G D + A+TG GKT AF LPIL++L
Sbjct: 9 STFNFSSALNKALEDMKFITPSPIQAQTIPLILEGRDAIALAQTGTGKTAAFALPILQNL 68
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV---YGGAVGLTSCCLYGGAPYH 228
+ P ++ + L+L PTRELA QV E F++ Y V + C GG Y
Sbjct: 69 S--PEISTTQA--------LILAPTRELAIQVAEQFELLSKYQRNVTIAVLC--GGQEYG 116
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q +L+ G VV+GTPGRI DHI++G + L++LK +LDEADEMLRMGF+EDVE IL K
Sbjct: 117 RQLKQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEK 176
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSS 346
+ + K Q LFSAT+P ++ I+ +L +D +I++ +M+ +T ++ L S
Sbjct: 177 LPE--KKQMALFSATMPYRIRQIANTYL-NDPASIEI----RMETATVKSIEQRFLFASV 229
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
+ + ++ G I+F TK S ++A+LL A A+HGDI QS RE +
Sbjct: 230 HQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERII 288
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
A F+ G LVAT+VAARGLD+ V +I + P D E Y+HR GRTGRAG
Sbjct: 289 AQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAG 340
>gi|354547955|emb|CCE44690.1| hypothetical protein CPAR2_404940 [Candida parapsilosis]
Length = 647
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 197/346 (56%), Gaps = 15/346 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V G DL+ A+TG GKT F+ P+L ES NGP
Sbjct: 175 LVENIKLSKFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVLSESYANGPAPV 234
Query: 179 SKKTG----YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ TG + P+VLV+ PTREL Q++++ + + C +YGGA Q +L
Sbjct: 235 PESTGTFSSHKAYPTVLVMAPTRELVSQIYDESKKFAYRSWVRPCVVYGGADIGNQIRQL 294
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE--DA 292
+G D+++ TPGR+KD +ERG + L+++K+ VLDEAD ML MGF + I+ + +
Sbjct: 295 DRGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRQIVQECDMPSV 354
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
QTL+FSAT P ++ ++ FLK+ I L S N+ VL + V
Sbjct: 355 ENRQTLMFSATFPRDIQMLARDFLKN---YIFLSVGRVGSTSENITQKVLYVEDEEKKSV 411
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
I D++ +S G TI+FTETK A LAD L A A+HGD Q +RE LA F++G
Sbjct: 412 ILDMLNANNS-GLTIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKNG 470
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
K LVAT VAARGLDI +V +I + P D++ Y+HR GRTGRAG
Sbjct: 471 KAPILVATAVAARGLDIPNVSHVINYDLPGDIDDYVHRIGRTGRAG 516
>gi|302521780|ref|ZP_07274122.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
SPB78]
gi|302430675|gb|EFL02491.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
SPB78]
Length = 485
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/359 (38%), Positives = 205/359 (57%), Gaps = 11/359 (3%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-NGPTKASK 180
E L++ GI S FPIQ++T + L GSD++G+A+TG GKTL F LP+LE +T + +A +
Sbjct: 22 EALEAVGIVSPFPIQSLTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVSADVEAGR 81
Query: 181 KTG--YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
T AP LV++PTREL QV D G + +YGG Y Q LKKG+
Sbjct: 82 ATPDKLSEAPQALVVVPTRELCTQVTNDLQTAGKVRDVRVLAIYGGRAYEPQVEALKKGV 141
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D + +DLS ++ VLDEADEML +GF+ DVE I+ + K QT+
Sbjct: 142 DVVVGTPGRLLDLAGQRKLDLSKVRALVLDEADEMLDLGFLPDVEKIVAML--PVKRQTM 199
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P V ++ +++ +++ N V S + +++ I++
Sbjct: 200 LFSATMPGAVVALARRYMSQPTHINATSPDDENATVANTEQHVFRAHSMDKPEMVARILQ 259
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G +IF TK +A+ +++ L A A+HGD+ Q RE L FR+GK LV
Sbjct: 260 AEGR-GLVMIFCRTKRTAADISEQLQRRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLV 318
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFK 473
T+VAARG+D+ V +I + P D + Y+HR GRTGRAG + +T V IP ++
Sbjct: 319 CTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAG-RSGTAVTLVDWDDIPRWQ 376
>gi|290511539|ref|ZP_06550908.1| ATP-dependent RNA helicase DeaD [Klebsiella sp. 1_1_55]
gi|289776532|gb|EFD84531.1| ATP-dependent RNA helicase DeaD [Klebsiella sp. 1_1_55]
Length = 659
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 202/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 29 LKAPILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 86
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 87 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 138
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 139 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 197
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 198 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 234
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 235 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 294
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 295 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 354
Query: 453 AG 454
AG
Sbjct: 355 AG 356
>gi|262042721|ref|ZP_06015875.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039946|gb|EEW41063.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 634
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 202/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 29 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNI--DP 86
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 87 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 138
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 139 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 197
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 198 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 234
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 235 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 294
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 295 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 354
Query: 453 AG 454
AG
Sbjct: 355 AG 356
>gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 619
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 144/378 (38%), Positives = 213/378 (56%), Gaps = 26/378 (6%)
Query: 84 KKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVP--LREKLKSKGIESLFPIQAMTFD 141
K + A + G E Q+ S + N+ + +P + E + G PIQ T
Sbjct: 31 KDTRAANTSEDTGAESQD---SANDNSQGFAHLGLPEKILEAVAKVGFTKPSPIQEETIP 87
Query: 142 MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201
++++G D+VG A+TG GKT AF LP+L + TKA R P LVL PTRELA
Sbjct: 88 ILMEGRDVVGLAQTGTGKTAAFALPVLSQID---TKA-------RHPQALVLAPTRELAL 137
Query: 202 QVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLS 260
QV + F + ++ G+ +YGG Y Q L++G V++GTPGR+ DH+E+G++DLS
Sbjct: 138 QVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRRGAQVIVGTPGRVIDHLEKGSLDLS 197
Query: 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDK 320
L+F VLDEADEML MGF EDVE IL D + Q LFSAT+P+ ++ +S ++L +
Sbjct: 198 QLQFLVLDEADEMLNMGFQEDVERILEDTPD--RKQVALFSATMPNAIRRLSKQYLDNPA 255
Query: 321 KTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA 380
+ V +E+ + + N+ L A+ I+ + I+F TK ++A
Sbjct: 256 EVT--VKSER-RTNDNITQRFLLIPHRAKMDAFTRILEVINYDA-IIVFCRTKHETEEVA 311
Query: 381 DLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP 436
+ L A A++GDI Q+QRE T+ + G+ LVAT+VAARGLD+ + ++ +
Sbjct: 312 ETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVVNFDI 371
Query: 437 PRDVEAYIHRSGRTGRAG 454
P D E+Y+HR GRTGRAG
Sbjct: 372 PNDTESYVHRIGRTGRAG 389
>gi|367030829|ref|XP_003664698.1| hypothetical protein MYCTH_2307795 [Myceliophthora thermophila ATCC
42464]
gi|347011968|gb|AEO59453.1| hypothetical protein MYCTH_2307795 [Myceliophthora thermophila ATCC
42464]
Length = 580
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 194/345 (56%), Gaps = 26/345 (7%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA ++ L G D++G A TG GKT+AF LP +E+L + P K G +V+
Sbjct: 219 PIQAASWPFALSGRDVIGIAETGSGKTMAFSLPCVEALASRPRPKHSKGGKTACARAVVV 278
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK--GIDVVIGTPGRIKDH 251
PTRELA Q H VGL++ CLYGGA Q L+K G D+++ TPGR+KD
Sbjct: 279 SPTRELAMQTHAAMSSLASLVGLSAVCLYGGASKDEQRALLRKNSGADIIVATPGRLKDF 338
Query: 252 IERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHI 311
+ G + LS + F VLDEAD ML GF ED++LILG K QTL+F+AT P V+ +
Sbjct: 339 LSEGCVSLSDVMFAVLDEADRMLDKGFEEDIKLILGSCPPREKRQTLMFTATWPMSVRGL 398
Query: 312 STKFLKSDKKTIDLVGNE--------------KMKASTNVRHIVLPCSSSARSQVIPDII 357
+ F+ K +GN +++A+T + V +A+ Q + +++
Sbjct: 399 AEGFMVDPVKVT--IGNRTRAGDENGGGSGSTELQANTRIEQKVEVVDPNAKEQRLLELL 456
Query: 358 RCYSSGG----RTIIFTETKESASQLADLL--PGAR--ALHGDIQQSQREVTLAGFRSGK 409
R G R ++F K+ A ++ L G R ++HGD++Q QR +L F+SGK
Sbjct: 457 REAQKGSGKNDRILVFCLYKKEAVRVEQFLERKGIRVASIHGDLRQDQRTRSLEAFKSGK 516
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLDI +V+L+I P +E Y+HR GRTGRAG
Sbjct: 517 TTVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAG 561
>gi|357127458|ref|XP_003565397.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 14-like
[Brachypodium distachyon]
Length = 655
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 147/404 (36%), Positives = 231/404 (57%), Gaps = 24/404 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP---ILESLTNGPT 176
LRE ++ G + PIQA ++ + L G D+V A+TG GKTL ++LP ++++L N
Sbjct: 167 LRE-VQQAGFSAPSPIQAQSWPITLKGRDIVAVAKTGSGKTLGYLLPGFILVKNLRN--- 222
Query: 177 KASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
+ + G P+VLVL PTRELA Q+ ++ +G + ++S CLYGGAP Q L++
Sbjct: 223 --NSRDG----PTVLVLSPTRELATQIQDEAVKFGRSSRISSTCLYGGAPKGPQLRDLER 276
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G D+V+ TPGR+ D +E + L + + VLDEAD ML MGF + I+ +V+ K Q
Sbjct: 277 GADIVVATPGRLNDILEMRKVSLHQVAYLVLDEADRMLDMGFEPQIRKIVKQVQP--KRQ 334
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
TL+F+AT P V+ I++ L ++ +++ +++ A+ ++ V S + + + I
Sbjct: 335 TLMFTATWPKEVRKIASDLL-TNPVQVNIGNTDQLVANKSITQYVEVISPMEKQRRLDQI 393
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+R G R IIF TK QL+ L GA A+HGD Q++R+ L+ FR+G+ L
Sbjct: 394 LRSQEPGSRIIIFCSTKRMCDQLSRNLSRQYGASAIHGDKSQAERDSVLSEFRNGRCPIL 453
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEA-AETITQVSDSVIPAF 472
VAT+VAARGLD+ D+++++ + P VE Y+HR GRTGRAG A T DS +
Sbjct: 454 VATDVAARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFCDQDS---KY 510
Query: 473 KSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDH 516
S ++L + S ++ L + +A GY R SS + +
Sbjct: 511 ASDLVKILEGANQSVSQQL-RDMASRGGYGSRPPRRWASSNDSY 553
>gi|422015367|ref|ZP_16361966.1| ATP-dependent RNA helicase DeaD [Providencia burhodogranariea DSM
19968]
gi|414099532|gb|EKT61173.1| ATP-dependent RNA helicase DeaD [Providencia burhodogranariea DSM
19968]
Length = 653
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 145/364 (39%), Positives = 202/364 (55%), Gaps = 61/364 (16%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S + L G E PIQ ++LDG+D++G A+TG GKT AF LP+L ++
Sbjct: 14 LSASILTALNDLGYEKPSPIQKQCIPLLLDGNDVLGMAQTGSGKTAAFGLPLLHNIDPDL 73
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+AP +LVL PTRELA QV E DF + V + LYGG Y Q
Sbjct: 74 ----------KAPQILVLAPTRELAVQVAEAMSDFSKHMSRVNV--VALYGGQRYDVQLR 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF+EDVE I+ ++
Sbjct: 122 ALRQGPQVVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAQ 181
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K K+ +++AS R
Sbjct: 182 H--QTALFSATMPEPIRRITRRFMKDPKEI-------RIQASITTR-------------- 218
Query: 353 IPDIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y SG R IIF TK + ++A+ L + AL+
Sbjct: 219 -PDITQSYWTVSGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN 277
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRT
Sbjct: 278 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRT 337
Query: 451 GRAG 454
GRAG
Sbjct: 338 GRAG 341
>gi|374335166|ref|YP_005091853.1| ATP-dependent RNA helicase [Oceanimonas sp. GK1]
gi|372984853|gb|AEY01103.1| ATP-dependent RNA helicase [Oceanimonas sp. GK1]
Length = 596
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/340 (39%), Positives = 193/340 (56%), Gaps = 21/340 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L G E IQA +L G D++G A+TG GKT AF LP+L ++ G
Sbjct: 21 QALTDAGYEQPSAIQAAAIPTLLTGRDVLGLAQTGTGKTAAFALPMLSRISGG------- 73
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
Y P VLVL PTRELA QV E F+ Y + +YGG Y +Q LK+G+D+
Sbjct: 74 NAY---PQVLVLAPTRELAIQVAESFENYAKYQKDIRIVSIYGGQAYDSQIRALKRGVDI 130
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH+ RG + L SL+ VLDEADEMLRMGF++DVE IL D Q LF
Sbjct: 131 VVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLRMGFIDDVEWILEHTPDTR--QIALF 188
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ ++ K+LK D + + + + AS R+ + + + + ++
Sbjct: 189 SATMPPAIQRVAQKYLK-DPQEVRIANKTRTNASIRQRYWFV--RGMPKQEALCRLVETE 245
Query: 361 SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+ ++F T++ A +LA+L+ ALHGDI Q RE + ++G+ LVAT
Sbjct: 246 NMDA-CLVFVRTRKDAEELAELMSREGHACEALHGDIPQKLREKVVDRLKNGRLNVLVAT 304
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
+V ARGLD+ + +I + P D E+Y+HR GRTGRAG E
Sbjct: 305 DVVARGLDVERISHVINYDMPHDNESYVHRIGRTGRAGRE 344
>gi|306819140|ref|ZP_07452854.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
gi|304648116|gb|EFM45427.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
Length = 523
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/347 (39%), Positives = 194/347 (55%), Gaps = 7/347 (2%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F + + L KGI FPIQA+T + ++ D++G+A+TG GKTL F +PIL +
Sbjct: 35 SDFGVEPEIVAALADKGIIHPFPIQALTLPVAIERHDIIGQAKTGTGKTLGFAIPILHDI 94
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ + AP LVLLPTRELAKQV + +YGG + +Q
Sbjct: 95 IGPGDEGWDELPSPGAPQALVLLPTRELAKQVAAEIRAAASHRVARILEIYGGVGFDSQI 154
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
LK G++VV+GTPGR+ D ++ G + L ++ VLDEADEML MGF+ DVE+++
Sbjct: 155 QSLKDGVEVVVGTPGRLIDLMKHGELQLKEVRTLVLDEADEMLDMGFLPDVEVLIAAT-- 212
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
+ T+LFSAT+P V ++ +++ ++ K V S + +
Sbjct: 213 PPERHTMLFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYRVHSMNKEE 272
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ + G TIIFT TK S +LAD L A A+HGD+ QS RE L FR
Sbjct: 273 VVARILQAKNRG-LTIIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFRH 331
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
GK LVAT+VAARG+D++DV +I E P D + YIHR GRT RAG
Sbjct: 332 GKVDVLVATDVAARGIDVDDVTHVINFECPEDEKTYIHRIGRTARAG 378
>gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
Length = 619
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 144/378 (38%), Positives = 213/378 (56%), Gaps = 26/378 (6%)
Query: 84 KKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVP--LREKLKSKGIESLFPIQAMTFD 141
K + A + G E Q+ S + N+ + +P + E + G PIQ T
Sbjct: 31 KDTRAANTSEDTGAESQD---SANDNSQGFAHLGLPEKILEAVAKVGFTKPSPIQEETIP 87
Query: 142 MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201
++++G D+VG A+TG GKT AF LP+L + TKA R P LVL PTRELA
Sbjct: 88 ILMEGRDVVGLAQTGTGKTAAFALPVLSQID---TKA-------RHPQALVLAPTRELAL 137
Query: 202 QVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLS 260
QV + F + ++ G+ +YGG Y Q L++G V++GTPGR+ DH+E+G++DLS
Sbjct: 138 QVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRRGAQVIVGTPGRVIDHLEKGSLDLS 197
Query: 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDK 320
L+F VLDEADEML MGF EDVE IL D + Q LFSAT+P+ ++ +S ++L +
Sbjct: 198 QLQFLVLDEADEMLNMGFQEDVERILEDTPD--RKQVALFSATMPNAIRRLSKQYLDNPA 255
Query: 321 KTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA 380
+ V +E+ + + N+ L A+ I+ + I+F TK ++A
Sbjct: 256 EVT--VKSER-RTNDNITQRFLLIPHRAKMDAFTRILEVINYDA-IIVFCRTKHETEEVA 311
Query: 381 DLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP 436
+ L A A++GDI Q+QRE T+ + G+ LVAT+VAARGLD+ + ++ +
Sbjct: 312 ETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVVNFDI 371
Query: 437 PRDVEAYIHRSGRTGRAG 454
P D E+Y+HR GRTGRAG
Sbjct: 372 PNDTESYVHRIGRTGRAG 389
>gi|238896669|ref|YP_002921414.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|329997852|ref|ZP_08302922.1| cold-shock DEAD-box protein A [Klebsiella sp. MS 92-3]
gi|419764847|ref|ZP_14291086.1| cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|238548996|dbj|BAH65347.1| cold-shock DeaD box ATP-dependent RNA helicase [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
gi|328538887|gb|EGF64951.1| cold-shock DEAD-box protein A [Klebsiella sp. MS 92-3]
gi|397741975|gb|EJK89194.1| cold-shock DEAD-box protein A [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
Length = 659
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 202/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 29 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNI--DP 86
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 87 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 138
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 139 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 197
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 198 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 234
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 235 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 294
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 295 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 354
Query: 453 AG 454
AG
Sbjct: 355 AG 356
>gi|50954624|ref|YP_061912.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951106|gb|AAT88807.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 491
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 202/347 (58%), Gaps = 17/347 (4%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S I + + L +KGI FPIQ T + L G D++G+A+TG GKT F LPI++ L
Sbjct: 4 SELNIDQDMVDALAAKGITEPFPIQTQTIPLALTGQDIIGQAKTGTGKTFGFGLPIIQRL 63
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
P + LV++PTRELA QV+ED + + +YGG Y Q
Sbjct: 64 GADPEPGVQ---------ALVVVPTRELAVQVYEDLEQAASNRPTSIAAIYGGKAYEGQI 114
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
+LK G VV+GTPGR+ D + ++LS+++ VLDEAD+ML +GF+ D+E + +
Sbjct: 115 AQLKAGAQVVVGTPGRLLDLAGQRLLNLSTVREMVLDEADKMLDLGFLSDIEKLFAQTPA 174
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
T+LFSAT+P + ++ +F+ + I ++ + N++H+V S + +
Sbjct: 175 TR--HTMLFSATMPGPIVALARRFM-TRPIHIRATDPDEGQIQANIKHLVYRAHSLDKDE 231
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ G+T+IFT TK SA++L + L A A+HGD+ Q QRE +A F++
Sbjct: 232 VVARILQSEGR-GKTVIFTRTKRSAAKLMEELNDRGFNAAAVHGDLNQEQRERAMAAFKA 290
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
GK L+AT+VAARG+D++DV +I P D + Y+HR+GRTGRAG
Sbjct: 291 GKKDVLIATDVAARGIDVDDVTHVINHTIPDDEKTYLHRAGRTGRAG 337
>gi|378582099|ref|ZP_09830739.1| ATP-dependent RNA helicase [Pantoea stewartii subsp. stewartii
DC283]
gi|377815414|gb|EHT98529.1| ATP-dependent RNA helicase [Pantoea stewartii subsp. stewartii
DC283]
Length = 622
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/340 (40%), Positives = 200/340 (58%), Gaps = 26/340 (7%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L G PIQA +L G D++G A+TG GKT AF LP+L ++ PT
Sbjct: 19 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNNID--PTI---- 72
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
+AP +LVL PTRELA QV E + + GL LYGG Y Q L++G V
Sbjct: 73 ----KAPQILVLAPTRELAVQVAEAMTEFSKHMRGLNVVALYGGQRYDVQLRALRQGPQV 128
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ + + QT LF
Sbjct: 129 VVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGH--QTALF 186
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ I+ +F+K ++ ++++S R + +A + ++R
Sbjct: 187 SATMPEAIRRITKRFMKDPQEV-------RIQSSLTTRPDISQSYWTAYGRKTDALVRFL 239
Query: 361 SSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G+ L+
Sbjct: 240 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 299
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 300 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAG 339
>gi|365144135|ref|ZP_09348522.1| cold-shock DEAD box protein A [Klebsiella sp. 4_1_44FAA]
gi|363648601|gb|EHL87759.1| cold-shock DEAD box protein A [Klebsiella sp. 4_1_44FAA]
Length = 643
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 201/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++ +S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIHSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|310644435|ref|YP_003949194.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
Length = 525
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 203/346 (58%), Gaps = 36/346 (10%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E LK +GI + P+Q + ++++G D++ A TG GKTLAF+LPIL+ L
Sbjct: 15 EALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQKLNLDK------ 68
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLKKGIDV 240
R P LV+ PTRELA Q+ E+ A L+ +YGG Q KLK G +
Sbjct: 69 ----RHPQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQLRKLKGGAQL 124
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
+IGTPGR+ DH+ RG +DL +K VLDEAD+ML MGF+ DVE IL +V + QT+LF
Sbjct: 125 IIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEV--PYRRQTMLF 182
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV-----RHIVLPCSSSARSQVIPD 355
SAT+P+ ++ ++ ++ + +D+ K+K++++V R +V+ + + Q + D
Sbjct: 183 SATMPAGIRKLARVYM---NEPVDV----KVKSASSVPVSQIRQVVVQTTDRGKQQALVD 235
Query: 356 II---RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
++ R Y + +IF TK AS+L + L + LHGD+ Q++RE + FR
Sbjct: 236 MLNTDRPYLA----VIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREA 291
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
K LVAT+VAARGLD+ V + + P+D E+YIHR GRTGRAG
Sbjct: 292 KLQLLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAG 337
>gi|400977106|ref|ZP_10804337.1| ATP-dependent RNA helicase [Salinibacterium sp. PAMC 21357]
Length = 505
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 199/349 (57%), Gaps = 21/349 (6%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S I + + L +KGI FPIQ T M L G D++G+A+TG GKTL F LP+L+SL
Sbjct: 4 SELNIDQDMVDALATKGIIEPFPIQTQTIPMGLAGQDIIGQAKTGTGKTLGFGLPVLQSL 63
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
P K L+++PTREL QV ED + +YGG Y Q
Sbjct: 64 GTDPEPGVK---------ALIVVPTRELCVQVAEDLVLAASNRSTKVAAIYGGKAYEGQV 114
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
++K G V++GTPGR+ D + + L +K VLDEAD+ML +GF+ D+E + +
Sbjct: 115 EQIKAGAQVIVGTPGRLLDLASQRMLSLKDIKVMVLDEADKMLDLGFLSDIEKLFAQTPP 174
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSAR 349
T+LFSAT+P + ++ +F+ K I + + + T N++H+V + +
Sbjct: 175 TR--HTMLFSATMPGPIVALARRFMN---KPIHIRATDPDEGLTQKNIKHVVYRAHNLDK 229
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+VI I++ G +T++FT TK +A++L + L A A+HGD+ Q QRE +A F
Sbjct: 230 DEVIARILQAEGRG-KTVVFTRTKRAAAKLVEELNDRGFNAAAVHGDLNQEQRERAMAAF 288
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
++GK L+AT+VAARG+D+NDV +I P D + Y+HR+GRTGRAG
Sbjct: 289 KAGKKDILIATDVAARGIDVNDVTHVINHTIPDDHDTYLHRAGRTGRAG 337
>gi|114330892|ref|YP_747114.1| DEAD/DEAH box helicase [Nitrosomonas eutropha C91]
gi|114307906|gb|ABI59149.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
Length = 455
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/332 (43%), Positives = 187/332 (56%), Gaps = 16/332 (4%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G S PIQ ++ G D++ A+TG GKT AF+LP L L P K GR
Sbjct: 20 GYTSPTPIQQQAIPELIAGHDVMASAQTGTGKTAAFMLPALHRLAT-PAKIQ-----GRG 73
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P +LVL PTRELA QV E YG + + + GG PY Q L + +DV++ TPG
Sbjct: 74 PRILVLTPTRELALQVSEAASKYGKFLPRVNVVSILGGMPYPLQNKLLSQVVDVLVATPG 133
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHIERG ID S L+ VLDEAD ML MGF+ DVE I N+ QTLLFSATL +
Sbjct: 134 RLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIHDVERIASSTP-TNR-QTLLFSATLDT 191
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+T+ LK K+ + K+ H V + R + D + C ++ +
Sbjct: 192 AIEKIATRLLKMPKRIQIASQHAKLDHIEQRMHYVDDLTHKNR---LLDHLLCDTTIKQA 248
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+FT TK A LAD L A A+HGD+ Q +R TL G R G+ LVAT+VAARG
Sbjct: 249 IVFTATKRDADSLADNLSAQGHKAAAMHGDMTQRERTRTLTGLRQGRLKILVATDVAARG 308
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+DI D+ +I + P+ E Y+HR GRTGRAG
Sbjct: 309 IDIADITHVINFDLPKFAEDYVHRIGRTGRAG 340
>gi|392305118|emb|CCI71481.1| putative ATP-dependent RNA helicase DDX17 [Paenibacillus polymyxa
M1]
Length = 535
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 203/346 (58%), Gaps = 36/346 (10%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E LK +GI + P+Q + ++++G D++ A TG GKTLAF+LPIL+ L
Sbjct: 25 EALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQKLNLDK------ 78
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLKKGIDV 240
R P LV+ PTRELA Q+ E+ A L+ +YGG Q KLK G +
Sbjct: 79 ----RHPQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQLRKLKGGAQL 134
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
+IGTPGR+ DH+ RG +DL +K VLDEAD+ML MGF+ DVE IL +V + QT+LF
Sbjct: 135 IIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEV--PYRRQTMLF 192
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV-----RHIVLPCSSSARSQVIPD 355
SAT+P+ ++ ++ ++ + +D+ K+K++++V R +V+ + + Q + D
Sbjct: 193 SATMPAGIRKLARVYM---NEPVDV----KVKSASSVPVSQIRQVVVQTTDRGKQQALVD 245
Query: 356 II---RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
++ R Y + +IF TK AS+L + L + LHGD+ Q++RE + FR
Sbjct: 246 MLNTDRPYLA----VIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREA 301
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
K LVAT+VAARGLD+ V + + P+D E+YIHR GRTGRAG
Sbjct: 302 KLQLLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAG 347
>gi|330792086|ref|XP_003284121.1| hypothetical protein DICPUDRAFT_27074 [Dictyostelium purpureum]
gi|325085935|gb|EGC39333.1| hypothetical protein DICPUDRAFT_27074 [Dictyostelium purpureum]
Length = 593
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/340 (37%), Positives = 199/340 (58%), Gaps = 14/340 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L +++ + G + PIQ+ + + L G D++G A+TG GKTLAF+LP + + PT
Sbjct: 230 LMKEIMAAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPTLKP 289
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
G P VLVL PTRELA Q+ E +GG +++ C+YGGA H+Q LKKG++
Sbjct: 290 -----GDGPIVLVLAPTRELALQIQEQARKFGGTSQISNVCVYGGASKHSQVMMLKKGVE 344
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+VI TPGR+ D + G+ +L + + VLDEAD ML MGF + IL ++ QTL+
Sbjct: 345 IVIATPGRLIDILTSGDTNLRRVTYLVLDEADRMLDMGFEPQIRKILSQIRPDR--QTLM 402
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT P V+ ++ FL SD + +G+ ++ A+ NV IV CS + + + +
Sbjct: 403 FSATWPKEVQSLANDFL-SDHIQVH-IGSSELTANHNVNQIVEVCSEYEKKERLFKFLEA 460
Query: 360 -YSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSGKFMTLV 414
S + IIF ET++ +L L A +HG+ Q +R+ L+ F++G F ++
Sbjct: 461 NVSKDDKVIIFAETRKGVDELHRSLQSAGFKSIGIHGNKSQPERDFVLSQFKNGIFPIMI 520
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT++A+RGLD+ D++ ++ + P +E Y+HR GRT RAG
Sbjct: 521 ATDLASRGLDVKDIKFVVNYDFPNTIETYVHRIGRTARAG 560
>gi|344301404|gb|EGW31716.1| hypothetical protein SPAPADRAFT_51698 [Spathaspora passalidarum
NRRL Y-27907]
Length = 644
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 202/362 (55%), Gaps = 20/362 (5%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLF----PIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P A+++F + PL L S F P+Q + +V G DL+ A+TG GKT F
Sbjct: 161 PEAITQF-TAPPLDPLLVENITLSRFTKPTPVQKYSVPIVTGGRDLMACAQTGSGKTGGF 219
Query: 164 VLPIL-ESLTNGPTKASKKTG----YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
+ P+L ES +GP + TG Y + P+ LV+ PTREL Q++++ + +
Sbjct: 220 LFPVLSESFKSGPAPIPEATGTFSSYKKYPTALVMAPTRELVSQIYDEAKKFAYRSWVRP 279
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C +YGGA Q + KG D+++ TPGR+KD +ERG I LS++K+ VLDEAD ML MGF
Sbjct: 280 CVVYGGADIGEQIRNIGKGCDLLVATPGRLKDLLERGRISLSNIKYLVLDEADRMLDMGF 339
Query: 279 VEDVELILGKVE--DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
+ I+ + + D N QTL+FSAT P ++ ++ FLK + L S N
Sbjct: 340 EPQIRHIVQECDMPDVNNRQTLMFSATFPRDIQLLAHDFLKD---YVFLSVGRVGSTSEN 396
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGD 392
+ +L + VI D++ G TI+FTETK A LAD L A A+HGD
Sbjct: 397 ITQKILYVEDDEKKSVILDLLSA-GDAGLTIVFTETKRMADNLADFLYDQGFPATAIHGD 455
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
Q +RE LA F++G LVAT VAARGLDI +V +I + P D++ Y+HR GRTGR
Sbjct: 456 RTQYEREKALAAFKNGAAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGR 515
Query: 453 AG 454
AG
Sbjct: 516 AG 517
>gi|225022855|ref|ZP_03712047.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
ATCC 33806]
gi|224944379|gb|EEG25588.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
ATCC 33806]
Length = 715
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/342 (40%), Positives = 202/342 (59%), Gaps = 22/342 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + +++ G E+ PIQA T ++LDG D++G A+TG GKT AF LPIL SL +
Sbjct: 89 PVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPIL-SLIDAEI-- 145
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG--LTSCCLYGGAPYHAQEFKLKK 236
R P L+L PTRELA QV + F V+ + ++ +YGG Y Q L++
Sbjct: 146 -------RHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGLRR 198
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G +V+GTPGR+ DH+E+G++D+S L+F VLDEADEML MGF EDVE IL + +V
Sbjct: 199 GAQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEEKQVA 258
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
LFSAT+PS ++ +S +++ +D I + + + +TN+ L + + + I
Sbjct: 259 --LFSATMPSGIRRLSKQYM-NDPHEIQV--KSETRTNTNITQRFLNVAHRNKLDALTRI 313
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMT 412
+ I+F TK +LA+ L A A++GDI Q QRE T+ + G+
Sbjct: 314 LEVTEFEA-MIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDI 372
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 373 LVATDVAARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAG 414
>gi|21672635|ref|NP_660702.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25090073|sp|Q8K9H6.1|DEAD_BUCAP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
Full=ATP-dependent RNA helicase DeaD homolog
gi|21623269|gb|AAM67913.1| ATP-dependent RNA helicase DEAD [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 601
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 197/328 (60%), Gaps = 26/328 (7%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA ++L+G D++G A+TG GKT AF LP+L +L +AP +LVL
Sbjct: 31 PIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINL----------KAPQILVL 80
Query: 194 LPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV E F D +G+ LYGG Y Q L++G +V+GTPGR+ DH+
Sbjct: 81 APTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALRQGPQIVVGTPGRLLDHL 140
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
+RG ++LS+L VLDEADEMLRMGF+EDVE I+ ++ + QT LFSAT+P ++ IS
Sbjct: 141 KRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEH--QTALFSATMPEAIRRIS 198
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY--SSGGRTIIFT 370
+F+K+ ++ K++++ R + + +IR TIIF
Sbjct: 199 KRFMKNPQEI-------KIQSNITTRPDIKQSYWMVYGRKTDALIRFLEVEDFSATIIFV 251
Query: 371 ETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
+TK + ++++ L + AL+GD+ Q+ RE TL +SG+ L+AT+VAARGLD++
Sbjct: 252 KTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLDILIATDVAARGLDVD 311
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ +I + P D E+Y+HR GRTGRAG
Sbjct: 312 RISFVINYDIPMDSESYVHRIGRTGRAG 339
>gi|170576579|ref|XP_001893687.1| RNA-dependent helicase [Brugia malayi]
gi|158600176|gb|EDP37484.1| RNA-dependent helicase, putative [Brugia malayi]
Length = 553
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 196/327 (59%), Gaps = 21/327 (6%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQ++++ + L G D+V A+TG GKT AF+LP + N P + G+ ++PSVLVLL
Sbjct: 154 IQSISWPIALSGRDMVSIAKTGSGKTFAFILPAIVHTINQPPR-----GHQKSPSVLVLL 208
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA+QV E Y A L+ CL+GGAP Q L++G+D++I TPGR+ D +E
Sbjct: 209 PTRELAQQVEEVAKDYCRATDLSITCLFGGAPKATQARDLERGVDIIIATPGRLMDFLEI 268
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G DL + VLDEAD ML MGF + ++ ++ QTL+FSAT P V+ ++
Sbjct: 269 GKTDLRRCTYLVLDEADRMLDMGFEPQIRKVVSQIRPDR--QTLMFSATWPKDVRKLAMD 326
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ----VIPDIIRCYSSGGRTIIFT 370
FL +D ++ VG+ ++ A+ N+ IV S + Q ++ DI+ +TIIF
Sbjct: 327 FL-TDAAHLN-VGSLELSANHNITQIVEIIDESNKQQRLMAILSDIMN--KEDCKTIIFV 382
Query: 371 ETKESASQLA-----DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425
ETK A L D P A +HGD QS+R+ L+ FRSGK L+AT+VAARGLD+
Sbjct: 383 ETKRKADDLTRWMRRDGWP-ALCIHGDKGQSERDWALSEFRSGKTPILLATDVAARGLDV 441
Query: 426 NDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+D++ +I + + E Y+HR GRTGR
Sbjct: 442 DDIKYVINFDYSNNSEDYVHRIGRTGR 468
>gi|429091566|ref|ZP_19154234.1| Cold-shock DEAD-box protein A [Cronobacter dublinensis 1210]
gi|426743896|emb|CCJ80347.1| Cold-shock DEAD-box protein A [Cronobacter dublinensis 1210]
Length = 638
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHNIDETL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS+LK VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|300718571|ref|YP_003743374.1| cold-shock protein [Erwinia billingiae Eb661]
gi|299064407|emb|CAX61527.1| Cold-shock DEAD-box protein A [Erwinia billingiae Eb661]
Length = 645
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 200/346 (57%), Gaps = 26/346 (7%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
++ L E L G PIQA +L G D++G A+TG GKT AF LP+L ++ +
Sbjct: 13 LNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNNIDSSL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+AP +LVL PTRELA QV E D GL LYGG Y Q L
Sbjct: 73 ----------KAPQILVLAPTRELAVQVGEAITDFSKHMKGLNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G VV+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ D +
Sbjct: 123 RQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDNH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R + +A +
Sbjct: 182 -QTALFSATMPEAIRRITKRFMKDPQEV-------RIQSSMTTRPDISQSYWTAFGRKTD 233
Query: 355 DIIRCYSSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ R + IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G
Sbjct: 234 ALTRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDG 293
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 294 RLDILIATDVAARGLDVERISLVVNFDIPMDAESYVHRIGRTGRAG 339
>gi|269468408|gb|EEZ80073.1| hypothetical protein Sup05_1317 [uncultured SUP05 cluster
bacterium]
Length = 614
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 153/425 (36%), Positives = 220/425 (51%), Gaps = 57/425 (13%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F +S + + L S G E+ PIQ +L+G D++G+A+TG GKT AF LP+L+++
Sbjct: 15 SDFGLSDSILKVLDSIGYETPSPIQEQCITHLLNGEDIIGQAQTGTGKTAAFALPLLDNI 74
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQ 230
AP +L+L PTRELA QV E VY G G +YGG Y Q
Sbjct: 75 DLSLN----------APQLLILAPTRELAIQVSEAVQVYARGLKGFHVLPIYGGQSYDIQ 124
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
LK+G+ V+GTPGR+ DHI++G + L LK VLDEADEML+MGF++D++ ++ ++
Sbjct: 125 LRPLKRGVHCVVGTPGRVMDHIKKGTLKLDQLKSFVLDEADEMLKMGFIDDIKWVMERIP 184
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSSSA 348
+ Q LFSAT+P+ +K ++ KFL + K K+K T + C
Sbjct: 185 EQR--QIALFSATMPNIIKRVAEKFLNNPKIV-------KVKTKTETAPTIGQKYCLVGG 235
Query: 349 RSQVIPDIIRCY--SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
SQ + + R + IIF TK +L++ L A A++GDIQQSQRE +
Sbjct: 236 LSQKLDALTRILEVTEFDAMIIFARTKTLTIELSEKLSARGFSAEAINGDIQQSQREKII 295
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEA----- 457
F+ G LVAT+VAARGLD+ + ++ + P+D E Y+HR GRTGRAG E
Sbjct: 296 NKFKKGGIDILVATDVAARGLDVPRISHVVNYDIPQDAETYVHRIGRTGRAGREGEAILF 355
Query: 458 -----------AETITQ-------------VSDSVIPAFKSAAEELLNNSGLSAAELLAK 493
E +T+ +++ I FK E +NN LS E L
Sbjct: 356 VSHRERRMLNNIERVTRQKIEPLELPTAKIINEKRIDTFKKRITETINNQDLSVFEKLVT 415
Query: 494 ALAKA 498
+A
Sbjct: 416 EFQEA 420
>gi|305682037|ref|ZP_07404841.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
14266]
gi|305658510|gb|EFM48013.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
14266]
Length = 721
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/342 (40%), Positives = 203/342 (59%), Gaps = 22/342 (6%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + +++ G E+ PIQA T ++LDG D++G A+TG GKT AF LPIL SL +
Sbjct: 82 PVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPIL-SLIDADI-- 138
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG--LTSCCLYGGAPYHAQEFKLKK 236
R P L+L PTRELA QV + F V+ + ++ +YGG Y Q L++
Sbjct: 139 -------RHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGLRR 191
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G +V+GTPGR+ DH+E+G++D+S L+F VLDEADEML MGF EDVE IL + +V
Sbjct: 192 GAQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEDKQVA 251
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
LFSAT+PS ++ +S +++ +D I + + + +TN+ L + + + I
Sbjct: 252 --LFSATMPSGIRRLSKQYM-NDPHEIQV--KSETRTNTNITQRFLNVAHRNKLDALTRI 306
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMT 412
+ + I+F TK +LA+ L A A++GDI Q QRE T+ + G+
Sbjct: 307 LEV-TEFEAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDI 365
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 366 LVATDVAARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAG 407
>gi|75287517|sp|Q5VQL1.1|RH14_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 14
gi|55296348|dbj|BAD68264.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
gi|222617825|gb|EEE53957.1| hypothetical protein OsJ_00557 [Oryza sativa Japonica Group]
gi|240065031|gb|ACS44654.1| ATP-dependent RNA helicase DB10 [Oryza sativa Japonica Group]
gi|240065056|gb|ACS44655.1| ATP-dependent RNA helicase DB10 [Oryza sativa Indica Group]
Length = 708
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/342 (39%), Positives = 206/342 (60%), Gaps = 19/342 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP---ILESLTNGPT 176
LRE ++ G + PIQA ++ + L D+V A+TG GKTL +++P +L+ L
Sbjct: 192 LRE-VQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRL----- 245
Query: 177 KASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
+ + + G P+VLVL PTRELA Q+ ++ +G + ++S CLYGGAP Q L++
Sbjct: 246 QHNSRDG----PTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLER 301
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G D+V+ TPGR+ D +E + L + + VLDEAD ML MGF + I+ +V+ K Q
Sbjct: 302 GADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQP--KRQ 359
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
TL+F+AT P V+ I++ L S+ +++ +++ A+ ++ V + +S+ + I
Sbjct: 360 TLMFTATWPKEVRKIASDLL-SNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQI 418
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+R G + IIF TK QLA L GA A+HGD Q++R+ L+ FRSG+ L
Sbjct: 419 LRSQEPGSKIIIFCSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPIL 478
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455
VAT+VAARGLDI D+++++ + P VE Y+HR GRTGRAG
Sbjct: 479 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGA 520
>gi|156935688|ref|YP_001439604.1| ATP-dependent RNA helicase DeaD [Cronobacter sakazakii ATCC
BAA-894]
gi|417789271|ref|ZP_12436924.1| ATP-dependent RNA helicase DeaD [Cronobacter sakazakii E899]
gi|449309803|ref|YP_007442159.1| ATP-dependent RNA helicase DeaD [Cronobacter sakazakii SP291]
gi|156533942|gb|ABU78768.1| hypothetical protein ESA_03554 [Cronobacter sakazakii ATCC BAA-894]
gi|333956577|gb|EGL74227.1| ATP-dependent RNA helicase DeaD [Cronobacter sakazakii E899]
gi|449099836|gb|AGE87870.1| ATP-dependent RNA helicase DeaD [Cronobacter sakazakii SP291]
Length = 635
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHNIDE-- 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 71 --------TLRAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS+LK VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|392960700|ref|ZP_10326165.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|421054542|ref|ZP_15517510.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|421057795|ref|ZP_15520561.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B3]
gi|421065831|ref|ZP_15527523.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|421071404|ref|ZP_15532524.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392440900|gb|EIW18560.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|392447320|gb|EIW24574.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392454597|gb|EIW31419.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|392458035|gb|EIW34626.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|392462136|gb|EIW38252.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B3]
Length = 526
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/351 (40%), Positives = 199/351 (56%), Gaps = 36/351 (10%)
Query: 117 SVPLREKLKSK----GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT 172
++PL +KL S G E PIQ T +VL+G D++G+A+TG GKT AF +P +E +
Sbjct: 9 TIPLSKKLLSAIAEMGFEEPSPIQNQTIPLVLEGHDVIGQAQTGTGKTAAFGIPAIEKIA 68
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+ R VLVL PTRELA QV E+ G + + +YGG P Q
Sbjct: 69 D-----------SRQIQVLVLTPTRELAIQVSEELAKIGKFKRIKTLPIYGGQPIDRQIK 117
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L+ G+ VVIGTPGR+ DHI R I L ++K +LDEADEML MGFVED+E I+ +V
Sbjct: 118 ALRMGVHVVIGTPGRLLDHIRRKTIKLDAVKTLILDEADEMLDMGFVEDIETIMQEVPVE 177
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QTLLFSAT+P + ++ K++ ++ KTI S N + +P +
Sbjct: 178 GR-QTLLFSATMPGPIATLARKYM-NNPKTI----------SINREQLTVPLIDQIYYET 225
Query: 353 ---IPDIIRCYS--SGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLA 403
+ + R + G++IIF TK L L G A LHGD+ Q+QR+ +
Sbjct: 226 REKLEALCRVLDVETTGKSIIFCRTKRGVDDLVVSLQGRGYMADGLHGDLSQAQRDRVMK 285
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
FR GK L+AT+VAARG+DI+D+ + + P+D EAY+HR GRTGRAG
Sbjct: 286 KFRDGKLELLIATDVAARGIDIDDITHVFNYDIPQDNEAYVHRIGRTGRAG 336
>gi|227875859|ref|ZP_03993985.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
gi|269977494|ref|ZP_06184466.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
gi|307700011|ref|ZP_07637060.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
mulieris FB024-16]
gi|227843607|gb|EEJ53790.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
gi|269934410|gb|EEZ90972.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
gi|307614772|gb|EFN93992.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
mulieris FB024-16]
Length = 523
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/347 (39%), Positives = 194/347 (55%), Gaps = 7/347 (2%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F + + L KGI FPIQA+T + ++ D++G+A+TG GKTL F +PIL +
Sbjct: 35 SDFGVEPEIVAALADKGIIHPFPIQALTLPVAIERHDIIGQAKTGTGKTLGFAIPILHDI 94
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ + AP LVLLPTRELAKQV + +YGG + +Q
Sbjct: 95 IGPGDEGWDELPSPGAPQALVLLPTRELAKQVAAEIRAAASHRVARILEIYGGVGFDSQI 154
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
LK G++VV+GTPGR+ D ++ G + L ++ VLDEADEML MGF+ DVE+++
Sbjct: 155 QSLKDGVEVVVGTPGRLIDLMKHGELQLKEVRTLVLDEADEMLDMGFLPDVEVLIAAT-- 212
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
+ T+LFSAT+P V ++ +++ ++ K V S + +
Sbjct: 213 PPERHTMLFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYRVHSMNKEE 272
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
V+ I++ + G TIIFT TK S +LAD L A A+HGD+ QS RE L FR
Sbjct: 273 VVARILQAKNRG-LTIIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFRH 331
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
GK LVAT+VAARG+D++DV +I E P D + YIHR GRT RAG
Sbjct: 332 GKVDVLVATDVAARGIDVDDVTHVINFECPEDEKTYIHRIGRTARAG 378
>gi|242051919|ref|XP_002455105.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
gi|241927080|gb|EES00225.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
Length = 673
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/342 (38%), Positives = 204/342 (59%), Gaps = 19/342 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP---ILESLTNGPT 176
LRE L++ G + PIQA ++ + + G D+V A+TG GKTL ++LP +L+ L +
Sbjct: 169 LREVLQA-GFSAPTPIQAQSWPIAIKGRDIVAVAKTGSGKTLGYLLPGFILLKRLQHNSR 227
Query: 177 KASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
+ P+VLVL PTRELA Q+ ++ +G + ++S CLYGGAP Q +L++
Sbjct: 228 EG---------PTVLVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLRELER 278
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G DVV+ TPGR+ D +E + L + + VLDEAD ML MGF + I+ ++ + Q
Sbjct: 279 GADVVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPP--RRQ 336
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
TL+++AT P V+ I++ L + + +++ +++ A+ ++ V +S+ + I
Sbjct: 337 TLMYTATWPKEVRRIASDLLNNPVQ-VNIGNTDQLVANKSITQHVEVIPHMEKSRRLDQI 395
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+R G + IIF TK QLA L GA A+HGD QS+R+ L FRSG+ L
Sbjct: 396 LRSQDPGSKIIIFCSTKRMCDQLARNLSRQYGASAIHGDKSQSERDSVLNDFRSGRCPVL 455
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455
VAT+VAARGLDI D+++++ + P VE Y+HR GRTGRAG
Sbjct: 456 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGA 497
>gi|421076010|ref|ZP_15537012.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
gi|392525869|gb|EIW48993.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
Length = 526
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/351 (40%), Positives = 199/351 (56%), Gaps = 36/351 (10%)
Query: 117 SVPLREKLKSK----GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT 172
++PL +KL S G E PIQ T +VL+G D++G+A+TG GKT AF +P +E +
Sbjct: 9 TIPLSKKLLSAIAEMGFEEPSPIQNQTIPLVLEGHDVIGQAQTGTGKTAAFGIPAIEKIA 68
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+ R VLVL PTRELA QV E+ G + + +YGG P Q
Sbjct: 69 D-----------SRQIQVLVLTPTRELAIQVSEELAKIGKFKRIKTLPIYGGQPIDRQIK 117
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L+ G+ VVIGTPGR+ DHI R I L ++K +LDEADEML MGFVED+E I+ +V
Sbjct: 118 ALRMGVHVVIGTPGRLLDHIRRKTIKLDAVKTLILDEADEMLDMGFVEDIETIMQEVPVE 177
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QTLLFSAT+P + ++ K++ ++ KTI S N + +P +
Sbjct: 178 GR-QTLLFSATMPGPIATLARKYM-NNPKTI----------SINREQLTVPLIDQIYYET 225
Query: 353 ---IPDIIRCYS--SGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLA 403
+ + R + G++IIF TK L L G A LHGD+ Q+QR+ +
Sbjct: 226 REKLEALCRVLDVETTGKSIIFCRTKRGVDDLVVSLQGRGYMADGLHGDLSQAQRDRVMK 285
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
FR GK L+AT+VAARG+DI+D+ + + P+D EAY+HR GRTGRAG
Sbjct: 286 KFRDGKLELLIATDVAARGIDIDDITHVFNYDIPQDNEAYVHRIGRTGRAG 336
>gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
Length = 623
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/332 (40%), Positives = 194/332 (58%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G + PIQA T ++++G D+VG A+TG GKT AF LP+L L R
Sbjct: 74 GFTTPSPIQAETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQLD----------PQARH 123
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL PTRELA QV + F + + G+ +YGG Y Q L++G V++GTPG
Sbjct: 124 PQALVLAPTRELALQVADAFQSFAETLKGIEVLPIYGGQAYGIQLSGLRRGAQVIVGTPG 183
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+E+G++DLS L+F VLDEADEML MGF EDVE IL D + Q LFSAT+P+
Sbjct: 184 RVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILESTPD--RKQVALFSATMPN 241
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ +S ++L + + V +E+ + + N++ L A+ I+ +
Sbjct: 242 AIRRLSKQYLHNPAEVT--VKSER-RTNDNIKQRFLLIPHRAKMDAFTRILEVITYDA-I 297
Query: 367 IIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK ++A+ L A A++GDI Q+QRE T+ + G+ LVAT+VAARG
Sbjct: 298 IVFCRTKHETEEVAEALRDRGYSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 357
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 358 LDVERITHVVNFDIPNDTESYVHRIGRTGRAG 389
>gi|291302062|ref|YP_003513340.1| DEAD/DEAH box helicase [Stackebrandtia nassauensis DSM 44728]
gi|290571282|gb|ADD44247.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
DSM 44728]
Length = 557
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/360 (39%), Positives = 201/360 (55%), Gaps = 15/360 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GI F IQ + + G+D++GRA TG GKTL F +P+LE++T+ A
Sbjct: 43 LSEIGITQAFAIQEYAIPIAMRGNDIIGRAPTGTGKTLGFGVPLLETVTSAAEGAD---- 98
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
GR P LV++PTREL QV D + G G+ +YGG Y Q L+ G+++V+G
Sbjct: 99 -GR-PQALVVVPTRELGLQVSRDIEAAGKTRGIRVLPIYGGRAYEPQLEALRTGVEIVVG 156
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D ++ ++ L ++ VLDEAD ML +GF EDVE +L + + + QT+LFSAT
Sbjct: 157 TPGRLLDLLKAKHLKLGAVHTAVLDEADRMLDLGFAEDVEKLLAALPE--QRQTMLFSAT 214
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + +S KFLK V + S + + S + +V+ I++
Sbjct: 215 MPDAIVSLSRKFLKQPMTIHAEVATDNAP-SAQTKQLAYLTHSLNKIEVLARILQAKDR- 272
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G TI+F+ TK ++AD L A+HGD+ Q+ RE L FRSGK LVAT+VA
Sbjct: 273 GLTIVFSRTKRHTQRVADDLEFRGFAVAAVHGDLGQNARERALRAFRSGKIDVLVATDVA 332
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEEL 479
ARGLD+ DV +I + P D E Y+HR GRTGRAG +T VS P +K A+ L
Sbjct: 333 ARGLDVRDVTHVINYDSPEDAETYVHRIGRTGRAGATGV-AVTFVSWEDAPRWKIIAKTL 391
>gi|329939625|ref|ZP_08288926.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
M045]
gi|329301195|gb|EGG45090.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
M045]
Length = 848
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/363 (39%), Positives = 207/363 (57%), Gaps = 19/363 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI + FPIQ MT + L GSD++G+A+TG GKTL F LP+LE ++ A +
Sbjct: 55 EALEAVGILNPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVS---VPADVE 111
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G R P LV++PTREL QV D G + +YGG Y Q LK
Sbjct: 112 AGRARPEDVTNTPQALVVVPTRELCVQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVEALK 171
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DVV+GTPGR+ D + ++L+ ++ VLDEADEML +GF+ DVE I+G + +
Sbjct: 172 KGVDVVVGTPGRLLDLAGQKKLNLAHVRCLVLDEADEMLDLGFLPDVEKIIGMLP--ARR 229
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS-TNVRHIVLPCSSSARSQVIP 354
QT+LFSAT+P V ++ +++ S I E + N++ V S + ++I
Sbjct: 230 QTMLFSATMPGAVISLARRYM-SQPTHIRATSPEGEGVTLANIKQFVYRAHSMDKPEMIA 288
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
I++ G +IF TK +A+ +A+ L + A+HGD+ Q RE L FR+GK
Sbjct: 289 RILQAEGR-GLAMIFCRTKRTAADIAEQLQQRGFASGAVHGDLGQGAREQALRAFRNGKV 347
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIP 470
LV T+VAARG+D+ V +I + P D + Y+HR+GRTGRAG + IT V IP
Sbjct: 348 DVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRTGRTGRAGA-SGTAITFVDWDDIP 406
Query: 471 AFK 473
++
Sbjct: 407 RWQ 409
>gi|419959496|ref|ZP_14475549.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
cloacae GS1]
gi|295097653|emb|CBK86743.1| ATP-dependent RNA helicase CsdA [Enterobacter cloacae subsp.
cloacae NCTC 9394]
gi|388605577|gb|EIM34794.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
cloacae GS1]
Length = 631
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNNIDPDL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|389842508|ref|YP_006344592.1| ATP-dependent RNA helicase DeaD [Cronobacter sakazakii ES15]
gi|429118789|ref|ZP_19179536.1| Cold-shock DEAD-box protein A [Cronobacter sakazakii 680]
gi|387852984|gb|AFK01082.1| ATP-dependent RNA helicase DeaD [Cronobacter sakazakii ES15]
gi|426326694|emb|CCK10273.1| Cold-shock DEAD-box protein A [Cronobacter sakazakii 680]
Length = 635
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHNIDETL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS+LK VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|254388923|ref|ZP_05004154.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC
27064]
gi|197702641|gb|EDY48453.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC
27064]
Length = 891
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 209/374 (55%), Gaps = 26/374 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI + FPIQ MT + L G+D++G+A+TG GKTL F LP+LE +T A +
Sbjct: 57 EALEAVGILNPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVT---VPADVE 113
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G R AP LV++PTREL QV D G + +YGG Y Q L+
Sbjct: 114 AGRARPDQLSEAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALR 173
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DV++GTPGR+ D + +DLS ++ VLDEADEML +GF+ DVE I+ + K
Sbjct: 174 KGVDVIVGTPGRLLDLAGQKKLDLSQVRALVLDEADEMLDLGFLPDVEKIIQLL--PAKR 231
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ +++ N+ V S + +++
Sbjct: 232 QTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANITQRVYRAHSMDKPEMVSR 291
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPGAR------ALHGDIQQSQREVTLAGFRSGK 409
I++ G +IF TK +A+ +AD L AR A+HGD+ Q RE L FR+GK
Sbjct: 292 ILQAEGR-GLAMIFCRTKRTAADIADQL--ARRGFASGAVHGDLGQGAREQALRAFRNGK 348
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVI 469
LV T+VAARG+D+ V +I + P D + Y+HR GRTGRAG + +T V I
Sbjct: 349 VDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRVGRTGRAGA-SGTAVTLVDWDDI 407
Query: 470 PAFKSAAEELLNNS 483
P + +L+N +
Sbjct: 408 PRW-----QLINKA 416
>gi|429083696|ref|ZP_19146725.1| Cold-shock DEAD-box protein A [Cronobacter condimenti 1330]
gi|426547315|emb|CCJ72766.1| Cold-shock DEAD-box protein A [Cronobacter condimenti 1330]
Length = 637
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNIDETL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS+LK VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|421729366|ref|ZP_16168503.1| ATP-dependent RNA helicase DeaD [Klebsiella oxytoca M5al]
gi|410369908|gb|EKP24652.1| ATP-dependent RNA helicase DeaD [Klebsiella oxytoca M5al]
Length = 654
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L +L P
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLD--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ QS RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQSLREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|212558739|gb|ACJ31193.1| Helicase:DbpA, RNA-binding:DEAD/DEAH box helicase [Shewanella
piezotolerans WP3]
Length = 611
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 156/446 (34%), Positives = 232/446 (52%), Gaps = 53/446 (11%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
PL L G E PIQA + D ++ G D++G+A+TG GKT AF LP+L S+ P
Sbjct: 16 PLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNSID--PNTN 73
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
S P +LVL PTRELA QV E F Y + GL +YGG H Q L++G
Sbjct: 74 S--------PQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQSMHQQLNALRRG 125
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+++GTPGR+ DH+ RG + L SLK VLDEADEML+MGF++D+E IL + Q
Sbjct: 126 PQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHT--PKQRQL 183
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P +K ++ K+L S+ + + + R + + S + + + ++
Sbjct: 184 ALFSATMPEQIKRVANKYL-SEPVHVKIAATTTTVETIEQRFVQV--SQHNKLEALVRVL 240
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G IIF T+ S +LA+ L + LHGD+ Q RE + + GK +
Sbjct: 241 EVEKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDII 299
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------------- 454
+AT+VAARGLD+ + ++ + P D EAY+HR GRTGRAG
Sbjct: 300 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRT 359
Query: 455 VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAK--------ALAKAVGYTEIKS 506
+E A T +++S IP+ ++ E L+ G E++AK A+AK E+ +
Sbjct: 360 IERA-TKSRISPMDIPSPETVTERRLSRLGEQIGEVIAKDSLDFMKGAVAKLCQELEVDT 418
Query: 507 RSLLSSLEDHVTVVLEAGKPIYTPSF 532
L ++L V + +P+ PS
Sbjct: 419 DVLAAALLQQV----QKDRPLQLPSM 440
>gi|377568438|ref|ZP_09797626.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia terrae NBRC
100016]
gi|377534326|dbj|GAB42791.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia terrae NBRC
100016]
Length = 590
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 194/340 (57%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T +L G D+VG A+TG GKT AF +PIL L
Sbjct: 29 VRAAVTDVGYETPSPIQAATIPTLLSGRDVVGLAQTGTGKTAAFAIPILSRLDTS----- 83
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
R P L+L PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 84 -----ARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGA 138
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+++ +D+S L+F VLDEADEML MGF EDVE IL + D +V
Sbjct: 139 QVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETPDTKQVA-- 196
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++L S + ++ K + N+ L S + + +
Sbjct: 197 LFSATMPSAIRRLAQRYLNSPQ---EITVKAKTATAQNITQRYLQVSHQRKLDALTRFLE 253
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G LV
Sbjct: 254 VETFDA-MIVFVRTKQATEELAEKLRSRGFSAVAINGDLAQAQRERTINQLKNGSIDILV 312
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 313 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 352
>gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
43247]
Length = 597
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 199/340 (58%), Gaps = 16/340 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T ++ G D+VG A+TG GKT AF +PIL L A
Sbjct: 28 VRAAVSDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRLEG----AG 83
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
+G R P LVL PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 84 DGSG-PRKPQALVLAPTRELALQVAEAFGRYSAHMPEVRVLPIYGGQSYGVQLAGLRRGA 142
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH++RG +D+S L+F VLDEADEML MGF EDVE IL + D +V
Sbjct: 143 QVIVGTPGRVIDHLDRGTLDISELRFLVLDEADEMLTMGFAEDVERILAETPDDKQVA-- 200
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++L +D + I + K + N+ L S + + +
Sbjct: 201 LFSATMPSAIRRLAQRYL-NDPQEITV--KSKTATAQNITQRYLQVSHQRKLDALTRFLE 257
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ I+F TK++ +LA+ L A A++GD+ Q+QRE T+ +SG LV
Sbjct: 258 VETFDA-MIVFVRTKQATEELAEKLRSRGFSAVAINGDMAQAQRERTINQLKSGGIDILV 316
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 317 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 356
>gi|119946809|ref|YP_944489.1| ATP-dependent RNA helicase [Psychromonas ingrahamii 37]
gi|119865413|gb|ABM04890.1| ATP-dependent RNA helicase CsdA [Psychromonas ingrahamii 37]
Length = 581
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 192/332 (57%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA ++L+G D++G A+TG GKT AF LP+L ++ +
Sbjct: 33 GYETPSPIQAQCIPLLLEGKDVLGLAQTGTGKTAAFALPLLANIDINLNQ---------- 82
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VL L PTRELA QV E F Y + G +YGG Y Q +LK+G VV+GTPG
Sbjct: 83 PQVLALAPTRELAIQVAEAFQTYARHLRGFHVLPIYGGQSYDIQFKQLKRGPQVVVGTPG 142
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
RI DH++R +DLS++K +LDEADEMLRMGF++DVE I+ ++ D K QT LFSAT+P
Sbjct: 143 RIMDHLKRKTLDLSNIKTLILDEADEMLRMGFIDDVETIMKEMPD--KRQTALFSATMPD 200
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+K I+ +++ S ++ K N+ + + ++ G
Sbjct: 201 QIKRITKRYMNS---PTEVKIQSKTSTVENIEQKCWIVRGVNKLDALTRMLETEEYDG-V 256
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA+ L + AL+GD+ Q RE T+A +SG LVAT+VAARG
Sbjct: 257 IIFARTKTATVELAERLEARGYRSAALNGDMNQQVRERTIARLKSGGLDILVATDVAARG 316
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 317 LDVERLSLVVNYDIPTDTESYVHRIGRTGRAG 348
>gi|408421077|ref|YP_006762491.1| cold-shock DEAD box protein DeaD [Desulfobacula toluolica Tol2]
gi|405108290|emb|CCK81787.1| DeaD: cold-shock DEAD box protein [Desulfobacula toluolica Tol2]
Length = 598
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 199/346 (57%), Gaps = 21/346 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+S P+ L+ G E+ PIQAMT ++ D++G+ARTG GKT AF LP+L
Sbjct: 14 MNLSPPVFSALQDVGYETPTPIQAMTIPHLIRNKDVLGQARTGTGKTAAFALPLL----- 68
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEF 232
S+ + P VLVL PTRELA QV E F YG + GL +YGG Y Q
Sbjct: 69 -----SRIDLDNKRPQVLVLTPTRELAIQVAESFKTYGARMKGLNVLSVYGGQSYGIQLN 123
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+LKKG+ VV+GTPGR+ DH+ + + + L +LDEADEML MGF++DVE IL +
Sbjct: 124 QLKKGVHVVVGTPGRLMDHMRKKTVSFADLFCVILDEADEMLHMGFIDDVEWILDRTPPD 183
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ K+L S ++ N ++ ++ + + ++
Sbjct: 184 S--QTALFSATMPRPIQKIAQKYLTSPEEFFIKPDNTEL---NTIKQQYWMVNGAKKAHA 238
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
+ I+ S G I+F +TK + +LA +L A AL+GD+ Q+ RE T+ ++
Sbjct: 239 LTRILEAVSFDG-VIVFVKTKTATLELAKILEDKGFKAEALNGDLAQNARERTVNRLKNS 297
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD++ + +I + P V+ Y+HR GRTGRAG
Sbjct: 298 HIDILVATDVAARGLDVDRISHVINYDMPSKVDPYVHRIGRTGRAG 343
>gi|218187595|gb|EEC70022.1| hypothetical protein OsI_00586 [Oryza sativa Indica Group]
Length = 754
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 204/340 (60%), Gaps = 18/340 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP---ILESLTNGPTKA 178
E ++ G + PIQA ++ + L D+V A+TG GKTL +++P +L+ L +
Sbjct: 240 EWVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRL-----QH 294
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
+ + G P+VLVL PTRELA Q+ ++ +G + ++S CLYGGAP Q L++G
Sbjct: 295 NSRDG----PTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGA 350
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
D+V+ TPGR+ D +E + L + + VLDEAD ML MGF + I+ +V+ K QTL
Sbjct: 351 DIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQP--KRQTL 408
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
+F+AT P V+ I++ L S+ +++ +++ A+ ++ V + +S+ + I+R
Sbjct: 409 MFTATWPKEVRKIASDLL-SNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILR 467
Query: 359 CYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
G + IIF TK QLA L GA A+HGD Q++R+ L+ FRSG+ LVA
Sbjct: 468 SQEPGSKIIIFCSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVA 527
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455
T+VAARGLDI D+++++ + P VE Y+HR GRTGRAG
Sbjct: 528 TDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGA 567
>gi|259506519|ref|ZP_05749421.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
gi|259165939|gb|EEW50493.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
Length = 424
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 144/358 (40%), Positives = 204/358 (56%), Gaps = 19/358 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + ++ + + L + GI F IQ T + LDG DL+G+ARTG GKT F
Sbjct: 4 ESPRPT-FTELGVAAEITDALDALGIRHTFAIQEYTLPIALDGHDLIGQARTGMGKTYGF 62
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+P+L+ + + ++ P LV++PTRELA QV ED + + L YG
Sbjct: 63 GVPLLDRVFD----SADIEEIDGTPRALVIVPTRELAVQVGEDLERAAVNLPLKVFTFYG 118
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G PY Q L+ G+DVV+GTPGR+ D +RG + L + VLDEADEML +GF+ D+E
Sbjct: 119 GTPYEEQIDALETGVDVVVGTPGRLLDLYQRGALRLDKVAILVLDEADEMLDLGFLPDIE 178
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIV 341
I+ + +K QT+LFSAT+P + ++ FL K + + A+T+ R IV
Sbjct: 179 KIMRAL--THKHQTMLFSATMPGPILTLARSFL---DKPVHIRAESADSAATHATTRQIV 233
Query: 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQS 396
+ V I++ G+TIIF TK +A+Q+A+ L AR ++HGD+ Q
Sbjct: 234 FQAHRMDKEAVTARILQARGR-GKTIIFARTKRTAAQVAEDL-AARGFTVGSVHGDMGQP 291
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RE +L FRSGK LVAT+VAARG+DI+DV +I + P D Y+HR GRTGRAG
Sbjct: 292 ARERSLNAFRSGKIDILVATDVAARGIDIDDVTHVINYQTPDDPMTYVHRIGRTGRAG 349
>gi|296104876|ref|YP_003615022.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059335|gb|ADF64073.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 631
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNNIDPDL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|331006491|ref|ZP_08329791.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
gi|330419691|gb|EGG94057.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
Length = 573
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/356 (39%), Positives = 199/356 (55%), Gaps = 22/356 (6%)
Query: 105 SEHPNAVSRFRISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
SE PN S +++P + + L G E+ PIQA + ++ +G DL+G+A+TG GKT A
Sbjct: 4 SETPNTPSFSELNLPEAILKTLVELGYETPSPIQAASIPIIQEGRDLLGQAQTGTGKTAA 63
Query: 163 FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222
F LP+L + PTK + P +LVL PTRELA QV E F Y + T +Y
Sbjct: 64 FALPLLSKI--DPTK--------KHPQLLVLAPTRELAIQVAEAFQTYSRHMSCTVLPIY 113
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG Y Q +LK+G +++GTPGR+ DHI R + L L+ VLDEADEMLRMGF++DV
Sbjct: 114 GGQSYDNQLRQLKRGTQIIVGTPGRVMDHIRRKTLKLDQLEALVLDEADEMLRMGFIDDV 173
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
E IL + Q LFSAT+P +K ++ K+L + K + K +T +R
Sbjct: 174 EWILEHTPKSR--QIALFSATMPKEIKKVADKYLVNPKH---IKIETKTSTATTIRQRFS 228
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQR 398
+ + + I+ G I+F TK + +LA+ L AL+GDI Q+QR
Sbjct: 229 IVNRNQKLDAFTRILEVEDFDG-VIVFVRTKVATLELAEKLSARGHSCAALNGDIPQNQR 287
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
E + + G L+AT+V ARGLD+ + +I + P D E+Y+HR GRTGRAG
Sbjct: 288 ENIVEKLKRGTLDILIATDVVARGLDVKRISHVINYDIPLDTESYVHRIGRTGRAG 343
>gi|404260234|ref|ZP_10963530.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia namibiensis NBRC
108229]
gi|403401275|dbj|GAC01940.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia namibiensis NBRC
108229]
Length = 594
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 195/340 (57%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T ++ G D+VG A+TG GKT AF +PIL L
Sbjct: 34 VRAAITDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRLDTS----- 88
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
R+P L+L PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 89 -----ARSPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGA 143
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+++ +D+S L+F VLDEADEML MGF EDVE IL + D +V
Sbjct: 144 QVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETPDTKQVA-- 201
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++LKS + ++ K + N+ L S + + +
Sbjct: 202 LFSATMPSSIRRLAQRYLKSPQ---EITVKSKTATAQNITQRYLQVSHQRKLDALTRFLE 258
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G LV
Sbjct: 259 VEEFDA-MIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERTINQLKNGSIDILV 317
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 318 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 357
>gi|401765355|ref|YP_006580362.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400176889|gb|AFP71738.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 631
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNNIDPDL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITKRFMKDPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|343924703|ref|ZP_08764245.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia alkanivorans
NBRC 16433]
gi|343765383|dbj|GAA11171.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia alkanivorans
NBRC 16433]
Length = 595
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 194/340 (57%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T ++ G D+VG A+TG GKT AF +PIL L
Sbjct: 34 VRAAITDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRLDTS----- 88
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
R P L+L PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 89 -----ARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGA 143
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH+++ +D+S L+F VLDEADEML MGF EDVE IL + D +V
Sbjct: 144 QVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETPDTKQVA-- 201
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++LKS + ++ K + N+ L S + + +
Sbjct: 202 LFSATMPSSIRRLAQRYLKSPQ---EITVKSKTATAQNITQRYLQVSHQRKLDALTRFLE 258
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G LV
Sbjct: 259 VEEFDA-MIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERTINQLKNGSIDILV 317
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 318 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 357
>gi|307611190|emb|CBX00835.1| hypothetical protein LPW_25391 [Legionella pneumophila 130b]
Length = 589
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 205/352 (58%), Gaps = 29/352 (8%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F S L + L+ + PIQA T ++L G D + A+TG GKT AF LPIL++L
Sbjct: 9 STFNFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNL 68
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV---YGGAVGLTSCCLYGGAPYH 228
+ P ++ + L+L PTRELA QV E F++ Y V + C GG Y
Sbjct: 69 S--PEISTTQA--------LILAPTRELAIQVAEQFELLSKYQRNVTIAVLC--GGQEYG 116
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q +L+ G VV+GTPGRI DHI++G + L++LK +LDEADEMLRMGF+EDVE IL K
Sbjct: 117 RQLKQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEK 176
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSS 346
+ + K Q LFSAT+P ++ I+ +L +D +I++ +M+ +T ++ L S
Sbjct: 177 LPE--KKQMALFSATMPYRIRQIANTYL-NDPASIEI----RMETATVKSIEQRFLFASV 229
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
+ + ++ G I+F TK S ++A+LL A A+HGDI QS RE +
Sbjct: 230 HQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERII 288
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
A F+ G LVAT+VAARGLD+ V +I + P D E Y+HR GRTGRAG
Sbjct: 289 AQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAG 340
>gi|148359886|ref|YP_001251093.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
gi|296107936|ref|YP_003619637.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
Alcoy]
gi|148281659|gb|ABQ55747.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
gi|295649838|gb|ADG25685.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
Alcoy]
Length = 589
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 205/352 (58%), Gaps = 29/352 (8%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F S L + L+ + PIQA T ++L G D + A+TG GKT AF LPIL++L
Sbjct: 9 STFNFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNL 68
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV---YGGAVGLTSCCLYGGAPYH 228
+ P ++ + L+L PTRELA QV E F++ Y V + C GG Y
Sbjct: 69 S--PEISTTQA--------LILAPTRELAIQVAEQFELLSKYQRNVTIAVLC--GGQEYG 116
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q +L+ G VV+GTPGRI DHI++G + L++LK +LDEADEMLRMGF+EDVE IL K
Sbjct: 117 RQLKQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEK 176
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSS 346
+ + K Q LFSAT+P ++ I+ +L +D +I++ +M+ +T ++ L S
Sbjct: 177 LPE--KKQMALFSATMPYRIRQIANTYL-NDPASIEI----RMETATVKSIEQRFLFASV 229
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
+ + ++ G I+F TK S ++A+LL A A+HGDI QS RE +
Sbjct: 230 HQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERII 288
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
A F+ G LVAT+VAARGLD+ V +I + P D E Y+HR GRTGRAG
Sbjct: 289 AQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAG 340
>gi|407275347|ref|ZP_11103817.1| cold-shock DEAD-box protein, partial [Rhodococcus sp. P14]
Length = 587
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 194/338 (57%), Gaps = 21/338 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L G E+ PIQA T +L+G D+VG A+TG GKT AF +PIL + A K+
Sbjct: 24 QALSDVGYENPSPIQAATIPPLLEGRDVVGLAQTGTGKTAAFAVPILSRIDT----AVKR 79
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
P L+L PTRELA QV E F Y + GL +YGG Y Q L++G V
Sbjct: 80 ------PQALILAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGAQV 133
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH+ +G +D+S L+F VLDEADEML MGF EDVE IL ++ +V LF
Sbjct: 134 IVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVERILADTPESKQVA--LF 191
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ +S ++L +++ K S N+ + S + + I+
Sbjct: 192 SATMPGAIRRLSKQYLHD---PVEITVKSKTTTSANISQRWVLVSHQRKLDALTRILEVE 248
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
IIF TK++ LA+ L A A++GDI Q+QRE T+ +SG LVAT
Sbjct: 249 QFEA-MIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVAT 307
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 308 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 345
>gi|325676734|ref|ZP_08156407.1| ATP-dependent RNA helicase, partial [Rhodococcus equi ATCC 33707]
gi|325552282|gb|EGD21971.1| ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707]
Length = 421
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/339 (40%), Positives = 186/339 (54%), Gaps = 19/339 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L L GI + FPIQA T +L G D++GR TG GKTLAF LP+L L G ++ S
Sbjct: 18 LVHALGRAGISAPFPIQAATIPDILAGRDVLGRGPTGSGKTLAFGLPLLVRLKGGASRPS 77
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ P +VL PTRELA Q+ + D A+GL + + GG P+ AQ KL + +D
Sbjct: 78 R-------PRAVVLAPTRELAAQIEKALDEPALALGLRTATIVGGVPFKAQAVKLSRTVD 130
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VVI TPGR+ DH+ +G I L ++ +DEAD M +GF+ V IL + + Q LL
Sbjct: 131 VVIATPGRLADHVSQGTITLDDVRITTVDEADHMAELGFLPQVTEILDRTPE--TAQRLL 188
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSATL V + ++L + E + A ++ H VL R P + R
Sbjct: 189 FSATLDGEVDTLVARYLHD---PVTHATAEAVAAVDSMEHHVL---HVPREIKYPTVARI 242
Query: 360 YSSGGRTIIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+ GRT++F TK +L D L A LHGD Q R LA F SG LVA
Sbjct: 243 AARKGRTLLFVRTKAGVDRLTDELRAAGIAAGGLHGDKPQGHRTRVLAEFASGTLPVLVA 302
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
T+VAARG+ ++DV L++ +PP + +AY+HR+GRT RAG
Sbjct: 303 TDVAARGIHVDDVSLVVHVDPPTEPKAYLHRAGRTARAG 341
>gi|429107253|ref|ZP_19169122.1| Cold-shock DEAD-box protein A [Cronobacter malonaticus 681]
gi|426293976|emb|CCJ95235.1| Cold-shock DEAD-box protein A [Cronobacter malonaticus 681]
Length = 542
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHNIDETL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS+LK VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|54295187|ref|YP_127602.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
gi|53755019|emb|CAH16507.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
Length = 589
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 205/352 (58%), Gaps = 29/352 (8%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F S L + L+ + PIQA T ++L G D + A+TG GKT AF LPIL++L
Sbjct: 9 STFNFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNL 68
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV---YGGAVGLTSCCLYGGAPYH 228
+ P ++ + L+L PTRELA QV E F++ Y V + C GG Y
Sbjct: 69 S--PEISTTQA--------LILAPTRELAIQVAEQFELLSKYQRNVTIAVLC--GGQEYG 116
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q +L+ G VV+GTPGRI DHI++G + L++LK +LDEADEMLRMGF+EDVE IL K
Sbjct: 117 RQLKQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEK 176
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSS 346
+ + K Q LFSAT+P ++ I+ +L +D +I++ +M+ +T ++ L S
Sbjct: 177 LPE--KKQMALFSATMPYRIRQIANTYL-NDPASIEI----RMETATVKSIEQRFLFASV 229
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
+ + ++ G I+F TK S ++A+LL A A+HGDI QS RE +
Sbjct: 230 HQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERII 288
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
A F+ G LVAT+VAARGLD+ V +I + P D E Y+HR GRTGRAG
Sbjct: 289 AQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAG 340
>gi|167756706|ref|ZP_02428833.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
gi|237732712|ref|ZP_04563193.1| helicase [Mollicutes bacterium D7]
gi|374627718|ref|ZP_09700120.1| hypothetical protein HMPREF0978_03440 [Coprobacillus sp.
8_2_54BFAA]
gi|167702881|gb|EDS17460.1| DEAD/DEAH box helicase [Clostridium ramosum DSM 1402]
gi|229384207|gb|EEO34298.1| helicase [Coprobacillus sp. D7]
gi|373912957|gb|EHQ44800.1| hypothetical protein HMPREF0978_03440 [Coprobacillus sp.
8_2_54BFAA]
Length = 535
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 196/326 (60%), Gaps = 18/326 (5%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQ ++L G D++G+A+TG GKTLAF +L +T P++ + P ++L
Sbjct: 30 IQEEAIPVLLTGVDVIGQAQTGTGKTLAFGSVLLSKIT--PSQR-------KLPQAIILS 80
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA Q+HE+ + G G C+YGG+ Q +KKGID+++GTPGR+ D + R
Sbjct: 81 PTRELAMQIHEEMERIGKYNGSRITCVYGGSDIERQIRTIKKGIDIIVGTPGRVMDLMRR 140
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
+ L+ +KF VLDEADEML MGFVED+E IL KV+D QT+LFSAT+P+ +K I+
Sbjct: 141 NVLKLNDVKFVVLDEADEMLNMGFVEDIETILEKVDDDR--QTILFSATMPAGIKKIAQN 198
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKE 374
++ + + + ++ K +T+V+ R + + +I ++ IIF TK
Sbjct: 199 YMHDNFEHVAVLS--KQTTATSVKQFYYEVKQKDRFEAMCRLIDV-ANVQTGIIFCRTKR 255
Query: 375 SASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430
S ++ + + A A+HGD+ Q+ R TL F+ G L+AT+VAARG+D+ +V
Sbjct: 256 SVDEVTEQMQQANYNVEAMHGDLSQNHRMNTLRKFKKGTINFLIATDVAARGIDVENVTH 315
Query: 431 IIQCEPPRDVEAYIHRSGRTGRAGVE 456
+I E P+D+E+Y+HR GRTGRA E
Sbjct: 316 VINYELPQDIESYVHRIGRTGRADKE 341
>gi|297192239|ref|ZP_06909637.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
25486]
gi|297151271|gb|EFH31061.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
25486]
Length = 539
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 204/362 (56%), Gaps = 17/362 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI S FPIQ MT + L GSD++G+A+TG GKTL F LP+LE +T A +
Sbjct: 36 EALEAVGILSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVT---VPADVE 92
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G + AP LV++PTREL QV D G + +YGG Y Q LK
Sbjct: 93 AGRAKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALK 152
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DV++GTPGR+ D + +DLS ++ VLDEADEML +GF+ DVE I+ ++ K
Sbjct: 153 KGVDVIVGTPGRLLDLAGQRKLDLSHVRALVLDEADEMLDLGFLPDVEKIIQQL--PAKR 210
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ +++ N V S + +++
Sbjct: 211 QTMLFSATMPGAVIGLARRYMSQPTHISATSPDDEGATVRNTTQRVYRAHSMDKPEMVSR 270
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
I++ G +IF TK +A+ +AD L + A+HGD+ Q RE L FR+GK
Sbjct: 271 ILQAEGR-GLAMIFCRTKRTAADIADQLAQRGFASGAVHGDLGQGAREQALRAFRNGKVD 329
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPA 471
LV T+VAARG+D+ V +I + P D + Y+HR GRTGRAG + +T V IP
Sbjct: 330 VLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGA-SGTAVTLVDWDDIPR 388
Query: 472 FK 473
++
Sbjct: 389 WQ 390
>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
Length = 417
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/342 (40%), Positives = 203/342 (59%), Gaps = 21/342 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+++ L+ G PIQ + L+G DLVG+A+TG GKT AF +P++ ++ P +
Sbjct: 12 IQKSLEEMGFVEPTPIQKEAIPLALEGHDLVGQAQTGTGKTAAFGIPLVSGIS--PRE-- 67
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKG-I 238
R +VL PTRELA QV + + G G+++ +YGG Q LK+G
Sbjct: 68 ------RGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAFPIYGGVSIERQINALKRGRH 121
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
+++GTPGR+KD I RG + L +++ VLDEAD+ML MGF+ED+E IL K QTL
Sbjct: 122 QIIVGTPGRVKDLINRGVLRLDRVRYAVLDEADQMLDMGFIEDIEEILSKTPKEK--QTL 179
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P ++ + ++LK D K + VG + + + V+ ++ S + + + +++
Sbjct: 180 LFSATMPYEIRRLIGRYLKPDYKNVK-VGKQLI--TPKVKQRIILVRSEDKIKALEKLLK 236
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ G TI+F +TK A+ + L ARA+HGD+ Q QRE + FR GK LV
Sbjct: 237 EHE-GVSTIVFVKTKRDAADIEKELQRRGINARAIHGDLSQRQREFVMRAFREGKVKVLV 295
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
AT+VAARG+DI DV L+I E P + E+Y+HR GRTGRAG E
Sbjct: 296 ATDVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGRE 337
>gi|52842555|ref|YP_096354.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378778243|ref|YP_005186682.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52629666|gb|AAU28407.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364509059|gb|AEW52583.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 589
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 205/352 (58%), Gaps = 29/352 (8%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F S L + L+ + PIQA T ++L G D + A+TG GKT AF LPIL++L
Sbjct: 9 STFNFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNL 68
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV---YGGAVGLTSCCLYGGAPYH 228
+ P ++ + L+L PTRELA QV E F++ Y V + C GG Y
Sbjct: 69 S--PEISTTQA--------LILAPTRELAIQVAEQFELLSKYQRNVTIAVLC--GGQEYG 116
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q +L+ G VV+GTPGRI DHI++G + L++LK +LDEADEMLRMGF+EDVE IL K
Sbjct: 117 RQLKQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEK 176
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSS 346
+ + K Q LFSAT+P ++ I+ +L +D +I++ +M+ +T ++ L S
Sbjct: 177 LPE--KKQMALFSATMPYRIRQIANTYL-NDPASIEI----RMETATVKSIEQRFLFASV 229
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
+ + ++ G I+F TK S ++A+LL A A+HGDI QS RE +
Sbjct: 230 HQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERII 288
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
A F+ G LVAT+VAARGLD+ V +I + P D E Y+HR GRTGRAG
Sbjct: 289 AQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAG 340
>gi|350632116|gb|EHA20484.1| hypothetical protein ASPNIDRAFT_203639 [Aspergillus niger ATCC
1015]
Length = 1569
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/361 (38%), Positives = 202/361 (55%), Gaps = 18/361 (4%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
NA + + L E +K ++ P+Q + +V++G DL+ A+TG GKT F+ PIL
Sbjct: 187 NAFTNPPLDDHLIENIKLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPIL 246
Query: 169 -ESLTNGPTKASKKTG----YGRA----PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
++ NGP+ A + G YGR P+ L+L PTREL Q+ ++ + + C
Sbjct: 247 SQAYQNGPSAAPAQAGGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPC 306
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
+YGGA +Q ++++G D+++ TPGR+ D IERG I L ++K+ +LDEAD ML MGF
Sbjct: 307 VVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFE 366
Query: 280 EDVELIL--GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
+ I+ + N QTL+FSAT P ++ ++ FLK + L S N+
Sbjct: 367 PQIRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKD---YVFLSVGRVGSTSENI 423
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDI 393
V + V+ DI+ + + G T+IF ETK A L+D L R A+HGD
Sbjct: 424 TQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDR 483
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q +RE L FRSG+ LVAT VAARGLDI +V +I + P D++ Y+HR GRTGRA
Sbjct: 484 TQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRA 543
Query: 454 G 454
G
Sbjct: 544 G 544
>gi|339627938|ref|YP_004719581.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|379007571|ref|YP_005257022.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
gi|339285727|gb|AEJ39838.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|361053833|gb|AEW05350.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
Length = 525
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/335 (42%), Positives = 194/335 (57%), Gaps = 20/335 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ G E PIQA T ++L+G DL+G+A+TG GKT AF +PI+E L + SK+
Sbjct: 21 LEEMGFEEPSPIQAKTIPIILEGHDLIGQAQTGTGKTAAFGIPIVERLDH----RSKRV- 75
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
LVL PTRELA QV E+ G G+ +YGG Y Q L+ G VVIG
Sbjct: 76 -----EALVLAPTRELAIQVAEEITKIGKFSGIKVVPIYGGQSYDRQIRALEHGAQVVIG 130
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ DHI RG + L ++ VLDEADEML MGF+ED+E IL V + QTLLFSAT
Sbjct: 131 TPGRVMDHIRRGTLKLDHVQMMVLDEADEMLDMGFIEDIEFILKNVPENR--QTLLFSAT 188
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ ++LK D ++ + E++ + + + + + I+
Sbjct: 189 VPDPIAKLARRYLK-DPVHVN-ISPERLTVPS-IEQVFYEVREFEKLDALTRILDM-EEA 244
Query: 364 GRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
RTIIF TK+ +L + L A ALHGD+ Q QR + F+ G LVAT+VA
Sbjct: 245 ERTIIFCRTKKRVDELTEGLQARGYTAEALHGDLNQVQRNRVMKRFKEGGSEILVATDVA 304
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
ARGLDI++V +I + P+D E+Y+HR GRTGRAG
Sbjct: 305 ARGLDIDNVTHVINYDLPQDTESYVHRIGRTGRAG 339
>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 491
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 190/332 (57%), Gaps = 14/332 (4%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G + PIQ +VL G D++G A+TG GKT F LP+L+ L AS T R
Sbjct: 20 GYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLLQRLAR---HASTSTSPARH 76
Query: 188 P-SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV E Y V L S C+YGG Q L+ GI++V+ TPG
Sbjct: 77 PVRALILAPTRELAMQVFESVKTYSKYVPLRSTCIYGGVDMKPQIQDLRNGIEIVVATPG 136
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+++ I L ++ VLDEAD ML MGF+ D+ IL + A Q+LLFSAT
Sbjct: 137 RLLDHVQQKTIQLGQVEMLVLDEADRMLDMGFIPDIRRILDLLPAAR--QSLLFSATFSD 194
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+K ++ + LK + + I+ V M S + H V P S+ + ++ ++R + +
Sbjct: 195 EIKKLADQMLK-EPQLIE-VARRNM-VSETITHRVHPVSAGLKRNLLAHLLR-HEPDTQA 250
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
++F TK + S+LA L A A+HGD Q+QR TL F+SGK LVAT+VAARG
Sbjct: 251 LVFVATKLACSRLAHFLERHGIAADAIHGDKGQAQRTDTLEAFKSGKLRVLVATDVAARG 310
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LDI+D+ +I E P E Y+HR GRTGRAG
Sbjct: 311 LDIDDLPSVINFELPHTAEDYVHRIGRTGRAG 342
>gi|392980845|ref|YP_006479433.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392326778|gb|AFM61731.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 631
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNNIDPDL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|452960046|gb|EME65376.1| cold-shock DEAD-box protein [Rhodococcus ruber BKS 20-38]
Length = 633
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/338 (40%), Positives = 192/338 (56%), Gaps = 21/338 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L G E+ PIQA T +L+G D+VG A+TG GKT AF +PIL + +
Sbjct: 24 QALSDVGYENPSPIQAATIPPLLEGRDVVGLAQTGTGKTAAFAVPILSRIDTTVKR---- 79
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
P L+L PTRELA QV E F Y + GL +YGG Y Q L++G V
Sbjct: 80 ------PQALILAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGAQV 133
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
++GTPGR+ DH+ +G +D+S L+F VLDEADEML MGF EDVE IL ++ +V LF
Sbjct: 134 IVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVERILADTPESKQVA--LF 191
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ +S ++L +++ K S N+ + S + + I+
Sbjct: 192 SATMPGAIRRLSKQYLHD---PVEITVKSKTTTSANITQRWVLVSHQRKLDALTRILEVE 248
Query: 361 SSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
IIF TK++ LA+ L A A++GDI Q+QRE T+ +SG LVAT
Sbjct: 249 QFEA-MIIFVRTKQATEDLAERLRARGFSASAINGDIVQAQRERTIGQLKSGALDILVAT 307
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 308 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 345
>gi|357018629|ref|ZP_09080894.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium thermoresistibile ATCC 19527]
gi|356481572|gb|EHI14675.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium thermoresistibile ATCC 19527]
Length = 564
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 194/332 (58%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ IQA T ++ GSD+VG A+TG GKT AF +PIL SK RA
Sbjct: 25 GYETPSAIQAATIPAMMAGSDVVGLAQTGTGKTAAFAIPIL----------SKIDTASRA 74
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
LVL PTRELA QV E F YG + + +YGG+ Y Q L++G +V+GTPG
Sbjct: 75 TQALVLAPTRELALQVAEAFGRYGAHLPDVQVLPIYGGSSYTVQLSGLRRGAQIVVGTPG 134
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH++RG +DLS L + VLDEADEML+MGF EDVE IL + +V LFSAT+P+
Sbjct: 135 RVIDHLDRGTLDLSRLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVA--LFSATMPA 192
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ ++TK+L +++ + + N+ + + + + ++
Sbjct: 193 AIRKLTTKYLHD---PVEVTVKARTATAENITQRFIQVAGPRKMDALTRVLETEPFEA-M 248
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK++ +LA+ L A A++GDI Q+QRE T+A + G L+AT+VAARG
Sbjct: 249 IVFVRTKQATEELAERLRSRGFAAAAINGDIAQAQRERTIAALKDGSLDILIATDVAARG 308
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 309 LDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 340
>gi|384226687|ref|YP_005618438.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
gi|311087784|gb|ADP67863.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 601
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 197/328 (60%), Gaps = 26/328 (7%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA ++L+G D++G A+TG GKT AF LP+L +L +AP +LVL
Sbjct: 31 PIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINL----------KAPQILVL 80
Query: 194 LPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV E F D +G+ LYGG Y Q L++G +V+GTPGR+ DH+
Sbjct: 81 APTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALRQGPQIVVGTPGRLLDHL 140
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
+RG ++LS+L VLDEADEMLRMGF+EDVE I+ ++ + QT LFSAT+P ++ IS
Sbjct: 141 KRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEH--QTALFSATMPEAIRRIS 198
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIFT 370
+F+++ K+ K++++ R + + +IR + TIIF
Sbjct: 199 KRFMRNPKEI-------KIQSNITTRPDIKQSYWMVYGRKTDALIRFLEAEDFSATIIFV 251
Query: 371 ETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
TK + ++++ L + AL+GD+ Q+ RE TL ++G+ L+AT+VAARGLD++
Sbjct: 252 RTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIATDVAARGLDVD 311
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ +I + P D E+Y+HR GRTGRAG
Sbjct: 312 RISFVINYDIPMDSESYVHRIGRTGRAG 339
>gi|41409410|ref|NP_962246.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41398241|gb|AAS05862.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 505
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/341 (39%), Positives = 196/341 (57%), Gaps = 18/341 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L KGI+ F IQ +T + L G DL+G+ARTG GKT AF +P+L+ +T G +
Sbjct: 25 LDEKGIQHPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITAG----TAPRA 80
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYG------GAVGLTSCCLYGGAPYHAQEFKLKKG 237
P LV++PTREL QV +D + G L+ +YGG PY Q L+ G
Sbjct: 81 LNGTPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPIYGGRPYEPQIDALRAG 140
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++ D Q+
Sbjct: 141 ADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPDDR--QS 198
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+LFSAT+P + ++ F+ + T V++ V + + +++ ++
Sbjct: 199 MLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQY-VYRAHALDKVELVSRVL 257
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ S G T+IFT TK +A ++AD L A+HGD+ Q RE L FR+G L
Sbjct: 258 QAESRGA-TMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRTGDIDVL 316
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARG+DI+DV +I + P D +AY+HR GRTGRAG
Sbjct: 317 VATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAG 357
>gi|15616977|ref|NP_240190.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681730|ref|YP_002468116.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682285|ref|YP_002468669.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471430|ref|ZP_05635429.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|384226175|ref|YP_005617338.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|384227233|ref|YP_005618983.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|414562732|ref|YP_005617923.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|11386733|sp|P57453.1|DEAD_BUCAI RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
Full=ATP-dependent RNA helicase DeaD homolog
gi|25403610|pir||D84973 ATP-dependent RNA helicase deaD [imported] - Buchnera sp. (strain
APS)
gi|10039042|dbj|BAB13076.1| ATP-dependent RNA helicase deaD [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219622018|gb|ACL30174.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624573|gb|ACL30728.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311086109|gb|ADP66191.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086682|gb|ADP66763.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311087268|gb|ADP67348.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
Length = 601
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 197/328 (60%), Gaps = 26/328 (7%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA ++L+G D++G A+TG GKT AF LP+L +L +AP +LVL
Sbjct: 31 PIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINL----------KAPQILVL 80
Query: 194 LPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV E F D +G+ LYGG Y Q L++G +V+GTPGR+ DH+
Sbjct: 81 APTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALRQGPQIVVGTPGRLLDHL 140
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
+RG ++LS+L VLDEADEMLRMGF+EDVE I+ ++ + QT LFSAT+P ++ IS
Sbjct: 141 KRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEH--QTALFSATMPEAIRRIS 198
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIFT 370
+F+++ K+ K++++ R + + +IR + TIIF
Sbjct: 199 KRFMRNPKEI-------KIQSNITTRPDIKQSYWMVYGRKTDALIRFLEAEDFSATIIFV 251
Query: 371 ETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
TK + ++++ L + AL+GD+ Q+ RE TL ++G+ L+AT+VAARGLD++
Sbjct: 252 RTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIATDVAARGLDVD 311
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ +I + P D E+Y+HR GRTGRAG
Sbjct: 312 RISFVINYDIPMDSESYVHRIGRTGRAG 339
>gi|415728848|ref|ZP_11472186.1| ATP-dependent RNA helicase [Gardnerella vaginalis 6119V5]
gi|388064848|gb|EIK87363.1| ATP-dependent RNA helicase [Gardnerella vaginalis 6119V5]
Length = 585
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 160/467 (34%), Positives = 250/467 (53%), Gaps = 34/467 (7%)
Query: 37 KSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSE--KEKKKKKKAKVEPE 94
+ ++K + K ++ + + +E+ I + E+ + + N K + K K + + + P+
Sbjct: 29 RKAEKAREKARQKALRYEETAIRDAEQ-DFAKKDFAKKENSKRDFTKNDKSSQNSVIIPD 87
Query: 95 AGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRAR 154
+ +E +E + ++ + PL E L++ G + FPIQ T L G++++GR R
Sbjct: 88 SAIESRENYRDD--VTFTQLGVPDPLVEVLRADGKTTAFPIQQATLPDSLQGANILGRGR 145
Query: 155 TGQGKTLAFVLPILESL--------TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206
TG GKTLAF +P++ L NG ++ AP ++L PTREL Q+ +
Sbjct: 146 TGSGKTLAFSIPLVARLAENFVDLINNGKNSRKNESDDIPAPRAMILAPTRELVHQIDDV 205
Query: 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
A G+ + +YGG Y Q +LKKG +V+ PGR++D I +G + L + V
Sbjct: 206 IAPLAAAYGMRTVTVYGGVRYQRQVSQLKKGAQIVLACPGRLEDLIRQGALTLEKVMVSV 265
Query: 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326
LDEADEM MGF+ V +L +V D N Q +LFSATL V + +FL + I V
Sbjct: 266 LDEADEMADMGFLPAVTRLLEQV-DPNG-QRMLFSATLDKQVSTLVNRFLPN--AVIHAV 321
Query: 327 GNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLADL--- 382
+ + T HI S+ + +V +R +SG R+I FT TK A +A
Sbjct: 322 DDADSQVDTMTHHI-FAVSAGDKYEV----LRKLASGCKRSIFFTRTKYQAKNMAKKFVQ 376
Query: 383 --LPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDV 440
+P A L G++ Q+QR+ LA F G LVAT+VAARG+DI+DV L++Q EPP D
Sbjct: 377 QGIP-AVDLQGNLSQNQRDRHLAVFSEGLVRVLVATDVAARGIDISDVALVVQTEPPEDP 435
Query: 441 EAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSA 487
++++HRSGRT RAG E + +T V+P K AA +L +G++A
Sbjct: 436 KSFLHRSGRTARAG-EEGDVVT----LVLPNQKRAAHTMLRRAGINA 477
>gi|78042906|ref|YP_359101.1| DEAD/DEAH box helicase [Carboxydothermus hydrogenoformans Z-2901]
gi|77995021|gb|ABB13920.1| ATP-dependent RNA helicase, DEAD box family [Carboxydothermus
hydrogenoformans Z-2901]
Length = 430
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/344 (40%), Positives = 202/344 (58%), Gaps = 25/344 (7%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
PL + + G E PIQ ++L+G +LVG+A TG GKT A++LP+L+ + G
Sbjct: 12 PLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRG---- 67
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
+ VL++ PTRELA QV ++ G + + + +YGG Q L++G+
Sbjct: 68 -------KKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGV 120
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
+V++GTPGRI DHI R + +K +LDEADEML MGF++D+E IL + N+ QTL
Sbjct: 121 EVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTL--TNRQQTL 178
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSATLP+ +K I KFL KT+ LVG EK + + LP ++ I ++
Sbjct: 179 LFSATLPAPIKTIIKKFL-GGYKTVKLVGREKTVPAIRQVYYELP-----ETEKIEGLVS 232
Query: 359 CYSS--GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412
+S + I+F TK+ ++ + L A+ LHGD+ Q +R T+ F++GK
Sbjct: 233 ILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTEL 292
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
LVAT+VAARGLDI DV +I + P++ E+YIHR GRTGRAG E
Sbjct: 293 LVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGRE 336
>gi|365972254|ref|YP_004953815.1| cold-shock DEAD box protein A [Enterobacter cloacae EcWSU1]
gi|365751167|gb|AEW75394.1| Cold-shock DEAD box protein A [Enterobacter cloacae EcWSU1]
Length = 642
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 21 LKAPILEALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLHNID--P 78
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 79 EL--------RAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 130
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 131 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 189
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 190 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 226
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 227 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 286
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 287 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 346
Query: 453 AG 454
AG
Sbjct: 347 AG 348
>gi|345300965|ref|YP_004830323.1| DEAD/DEAH box helicase [Enterobacter asburiae LF7a]
gi|345094902|gb|AEN66538.1| DEAD/DEAH box helicase domain protein [Enterobacter asburiae LF7a]
Length = 637
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNNIDPDL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|334125775|ref|ZP_08499761.1| ATP-dependent RNA helicase DeaD [Enterobacter hormaechei ATCC
49162]
gi|333386537|gb|EGK57750.1| ATP-dependent RNA helicase DeaD [Enterobacter hormaechei ATCC
49162]
Length = 630
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNNIDPDL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
Length = 637
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 155/441 (35%), Positives = 232/441 (52%), Gaps = 53/441 (12%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E+ PIQA + ++ G D++G+A+TG GKT AF LP+L S+
Sbjct: 21 LDELGYETPTPIQAASIQPLMSGQDILGQAQTGTGKTGAFALPLLCSVDANLN------- 73
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
AP +LVL PTRELA QV E F Y + G +YGG + Q L++G VV+
Sbjct: 74 ---APQILVLAPTRELAVQVAEAFTSYAKHMKGFHVLPIYGGQSMYQQLQALRRGPQVVV 130
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ RG + L +LK VLDEADEML+MGF++D+E IL ++ Q LFSA
Sbjct: 131 GTPGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWILEHTPESR--QLALFSA 188
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P +K ++ K L+ + I + + S R + + S + + + ++ ++
Sbjct: 189 TMPEQIKRVANKHLR-NPVNISIAASHTTVESIEQRFVQV--SQHNKLEALVRVLEVENT 245
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
G IIF T+ S +LA+ L A LHGD+ Q RE + +SGK L+AT+V
Sbjct: 246 EG-IIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILIATDV 304
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG-------------------VEAAE 459
AARGLD+ + ++ + P D EAY+HR GRTGRAG +E A
Sbjct: 305 AARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERA- 363
Query: 460 TITQVSDSVIPAFKSAAEELLNNSGLSAAELLAK--------ALAKAVGYTEIKSRSLLS 511
T +++S IP+ +S AE L+ G A++LA A+A+ E+ + L +
Sbjct: 364 TNSRISPMKIPSPESVAERRLSRLGEQVADILANEHLDFMKGAVAQLCQQLEVDTEQLAA 423
Query: 512 SLEDHVTVVLEAGKPIYTPSF 532
+L V + +P+ P+
Sbjct: 424 ALLHQV----QLERPLQLPAM 440
>gi|388257453|ref|ZP_10134632.1| putative ATP-dependent RNA helicase DeaD [Cellvibrio sp. BR]
gi|387938620|gb|EIK45172.1| putative ATP-dependent RNA helicase DeaD [Cellvibrio sp. BR]
Length = 609
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/344 (39%), Positives = 197/344 (57%), Gaps = 21/344 (6%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ ++ G E PIQA ++L G D++G A+TG GKT AF LP+L +
Sbjct: 12 LSEPVMRAIQKVGYEQPSPIQAAAIPVLLAGGDILGMAQTGTGKTAAFALPLLSRID--- 68
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
TK ++ P +LVL PTRELA QV E F Y + G +YGG Q L
Sbjct: 69 TKQAE-------PQILVLAPTRELAIQVAEAFQKYASEIPGFHVLPIYGGQEMTTQLRSL 121
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K+G VV+GTPGR+ DH+ RG+++L++LK VLDEADEMLRMGF++DVE IL
Sbjct: 122 KRGAHVVVGTPGRVMDHLRRGSLNLNNLKALVLDEADEMLRMGFIDDVEWILEHTPKTR- 180
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++H+ +L ++ I + ++ A N+ + S + + +
Sbjct: 181 -QTALFSATMPKEIRHVCNNYL-NNATEIKIASSQSTDA--NIEQVYWMVSGTNKLDALT 236
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKF 410
I+ G IIF TK + +LA+ L A AL+GD+ Q RE T+ ++ K
Sbjct: 237 RILEVEPFDG-MIIFVRTKTATVELAEKLEARGYSAAALNGDMNQQLRERTIERLKTNKL 295
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
++AT+VAARG+D+ V ++ + P D EAY+HR GRTGRAG
Sbjct: 296 DIVIATDVAARGIDVERVSHVVNYDIPYDSEAYVHRIGRTGRAG 339
>gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
Length = 559
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 203/346 (58%), Gaps = 36/346 (10%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E LK +GI S P+Q + ++++G D++ A TG GKTLAF+LPIL+ L
Sbjct: 25 EALKEQGISSPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQKLNLDK------ 78
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLKKGIDV 240
R P LV+ PTRELA Q+ E+ + L+ +YGG Q KLK G +
Sbjct: 79 ----RHPQALVIAPTRELALQITEEANRLAATEPSLSLLAVYGGQDVERQLRKLKGGAQL 134
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
+IGTPGR+ DH+ RG +DL +K VLDEAD+ML MGF+ DVE IL +V + QT+LF
Sbjct: 135 IIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEV--PYRRQTMLF 192
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV-----RHIVLPCSSSARSQVIPD 355
SAT+P+ ++ ++ ++ + +D+ K+K++++V R +V+ + + Q + D
Sbjct: 193 SATMPAGIRKLARVYM---NEPVDV----KVKSASSVPVSQIRQVVVQTTDRGKQQALVD 245
Query: 356 II---RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
++ R Y + +IF TK A++L + L + LHGD+ Q++RE + FR
Sbjct: 246 MLNTDRPYLA----VIFCRTKRRAAKLNEELQEMGFESGELHGDLSQNKREQVMKAFREA 301
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
K LVAT+VAARGLD+ V + + P+D E+YIHR GRTGRAG
Sbjct: 302 KLQLLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAG 347
>gi|229493790|ref|ZP_04387568.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
gi|453073421|ref|ZP_21976361.1| ATP-dependent RNA helicase DeaD [Rhodococcus qingshengii BKS 20-40]
gi|226186698|dbj|BAH34802.1| probable ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis
PR4]
gi|229319289|gb|EEN85132.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
gi|452756185|gb|EME14602.1| ATP-dependent RNA helicase DeaD [Rhodococcus qingshengii BKS 20-40]
Length = 591
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 137/336 (40%), Positives = 197/336 (58%), Gaps = 21/336 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G ES PIQA T +L+G D+VG A+TG GKT AF +P+L + + K+T
Sbjct: 26 LSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTGKTAAFAVPVLSRIDT----SIKQT- 80
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
LVL PTRELA QV E F Y + GL +YGG Y Q L++G VV+
Sbjct: 81 -----QALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSYGVQLSGLRRGAHVVV 135
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+E+G +DL++LK+ VLDEADEML+MGF EDVE IL + Q LFSA
Sbjct: 136 GTPGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILR--DTPGDKQVALFSA 193
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ IS ++L + +++ K ++N+ + + + + ++ +
Sbjct: 194 TMPGSIRRISKQYLNN---PVEITVKSKTSTASNITQRYIQVAHQRKLDALTRVLEVEAF 250
Query: 363 GGRTIIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK++ LA+ L A A++GDI Q+QRE T+ ++G LVAT+V
Sbjct: 251 EA-MIIFVRTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGALDILVATDV 309
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 310 AARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 345
>gi|354725364|ref|ZP_09039579.1| ATP-dependent RNA helicase DeaD [Enterobacter mori LMG 25706]
Length = 631
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILESLNDLGYEKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNNIDPDL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|254776598|ref|ZP_05218114.1| RhlE [Mycobacterium avium subsp. avium ATCC 25291]
Length = 505
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/341 (39%), Positives = 196/341 (57%), Gaps = 18/341 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L KGI+ F IQ +T + L G DL+G+ARTG GKT AF +P+L+ +T G +
Sbjct: 25 LDEKGIQHSFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITAG----TAPRA 80
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYG------GAVGLTSCCLYGGAPYHAQEFKLKKG 237
P LV++PTREL QV +D + G L+ +YGG PY Q L+ G
Sbjct: 81 LNGTPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPIYGGRPYEPQIDALRAG 140
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++ D Q+
Sbjct: 141 ADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPDDR--QS 198
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+LFSAT+P + ++ F+ + T V++ V + + +++ ++
Sbjct: 199 MLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQY-VYRAHALDKVELVSRVL 257
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ S G T+IFT TK +A ++AD L A+HGD+ Q RE L FR+G L
Sbjct: 258 QAESRGA-TMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRTGDIDVL 316
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARG+DI+DV +I + P D +AY+HR GRTGRAG
Sbjct: 317 VATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAG 357
>gi|347359736|ref|YP_386648.2| DEAD/DEAH box helicase [Desulfovibrio alaskensis G20]
gi|342906268|gb|ABB36953.2| DEAD/DEAH box helicase domain protein [Desulfovibrio alaskensis
G20]
Length = 528
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 198/336 (58%), Gaps = 21/336 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
++ G E PIQ M+ +L G D+VG+A+TG GKT AF +PILE + P
Sbjct: 20 IQDMGFEEASPIQTMSIPHILAGKDVVGQAQTGTGKTAAFGIPILERI--DPRD------ 71
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
+A +VL PTRELA QV E+ G++ +YGG P Q L++G V++
Sbjct: 72 --KATQAVVLCPTRELAIQVAEEVTTLARHKRGISVVPVYGGQPIERQVRALRRGAQVIV 129
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH++RG +D++++K VLDEADEML MGF +D+E ILGK+E +VQT+ FSA
Sbjct: 130 GTPGRVMDHLDRGTMDINTVKMVVLDEADEMLDMGFRDDIEFILGKME--QEVQTVFFSA 187
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P + ++ ++LK + L +K+ ++ I + + + ++ Y+
Sbjct: 188 TMPRAILDMAQRYLKEPEF---LKVTQKLLTVPSIEQIYFEVRPFQKLESLCRVLDVYNP 244
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
TI+F TK +LA L A LHG++ Q+QR+ + FR G LVAT+V
Sbjct: 245 -KLTIVFCSTKVGVDELATNLQARGYDADGLHGNLNQAQRDRVMNRFRKGNIDILVATDV 303
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARG+D+ +V+ ++ + P DVE+Y+HR GRTGRAG
Sbjct: 304 AARGIDVENVEAVVNYDIPNDVESYVHRIGRTGRAG 339
>gi|284044842|ref|YP_003395182.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
gi|283949063|gb|ADB51807.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
14684]
Length = 590
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 140/343 (40%), Positives = 191/343 (55%), Gaps = 15/343 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + L G E PIQ +L+G DL+G+A TG GKT AF LPIL+ + G
Sbjct: 26 LLDALTGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPILQRMEPG----- 80
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
++ G P LVL+PTRELA QV E YG ++G +YGG P Q LK+G+D
Sbjct: 81 -RSAIG--PLALVLVPTRELAVQVSEALHRYGRSLGARVLPIYGGQPIGRQLNALKRGVD 137
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+GTPGR+ DHI R + L L+ VLDEADEML MGF ED+E IL + D + QT+L
Sbjct: 138 VVVGTPGRVLDHISRNTLRLDELRIVVLDEADEMLDMGFAEDIESILAETPDGGR-QTVL 196
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P + I+ L SD I++ + VR + + + + ++
Sbjct: 197 FSATMPPRIDRIARAHL-SDPVRIEIARETSAGDTPLVRQSAYVVARAHKPAALGRVLDV 255
Query: 360 YSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
S I+F T++ QL + L G A ALHG + Q QR+ +A R+G LVA
Sbjct: 256 ESPTA-AIVFCRTRDEVDQLTETLNGRGYRAEALHGGMTQEQRDRVMARLRNGTADLLVA 314
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458
T+VAARGLD+ + ++ + P E+Y+HR GR GRAG E A
Sbjct: 315 TDVAARGLDVEQLTHVVNYDVPSSPESYVHRIGRVGRAGREGA 357
>gi|384083631|ref|ZP_09994806.1| ATP-dependent RNA helicase [gamma proteobacterium HIMB30]
Length = 515
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 140/357 (39%), Positives = 212/357 (59%), Gaps = 21/357 (5%)
Query: 113 RFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT 172
RF+ L E + + G ++ P+QA +L+G+D++ A+TG GKT AF LP+L+ L
Sbjct: 2 RFQDLGLLPELVSNAGYDAATPVQANAIPAILEGNDVLAGAQTGTGKTAAFALPVLQKLY 61
Query: 173 NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G ++ AP LVL PTRELA QV + YG +GL ++GG Y Q
Sbjct: 62 AGKSQ--------HAPRALVLAPTRELAAQVADSVRKYGKKLGLKHTSIFGGVSYGGQMK 113
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L+ G+D+VI TPGR+ DH+ +G+IDLS ++ +LDEAD ML MGFV D+ELI+ K +
Sbjct: 114 ALRGGLDLVIATPGRLIDHLNQGSIDLSQVQTLILDEADRMLDMGFVGDIELIISKCH-S 172
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
N+ QTLLFSAT +K++++K+L + +++ +++ S++V + + ++
Sbjct: 173 NR-QTLLFSATYNKGIKNLASKYLTN---PVEVAVSKENTVSSSVEQTFVHVDQHNKREL 228
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLA-----DLLPGARALHGDIQQSQREVTLAGFRS 407
+ +I ++ + ++FT+TK A +LA D LP A+HG+ Q+QR L F+
Sbjct: 229 LTQLI-GLNNMHQVLVFTKTKFGADKLARALTDDGLPSV-AMHGNKSQAQRTKALQKFKR 286
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQV 464
G LVAT+VAARG+DI + +I E P E Y+HR GRTGRAG E E I+ V
Sbjct: 287 GAARILVATDVAARGIDIQKLPYVINFELPMVAEDYVHRIGRTGRAG-EKGEAISFV 342
>gi|8928554|sp|P33906.3|DEAD_KLEPN RecName: Full=Cold-shock DEAD box protein A; AltName:
Full=ATP-dependent RNA helicase DeaD
Length = 643
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 201/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE L + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQALERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|115434786|ref|NP_001042151.1| Os01g0172200 [Oryza sativa Japonica Group]
gi|55296347|dbj|BAD68263.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
gi|113531682|dbj|BAF04065.1| Os01g0172200 [Oryza sativa Japonica Group]
gi|215713416|dbj|BAG94553.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 759
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/338 (39%), Positives = 204/338 (60%), Gaps = 18/338 (5%)
Query: 123 KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP---ILESLTNGPTKAS 179
K++ G + PIQA ++ + L D+V A+TG GKTL +++P +L+ L + +
Sbjct: 245 KVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRL-----QHN 299
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ G P+VLVL PTRELA Q+ ++ +G + ++S CLYGGAP Q L++G D
Sbjct: 300 SRDG----PTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGAD 355
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+ TPGR+ D +E + L + + VLDEAD ML MGF + I+ +V+ K QTL+
Sbjct: 356 IVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQP--KRQTLM 413
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
F+AT P V+ I++ L S+ +++ +++ A+ ++ V + +S+ + I+R
Sbjct: 414 FTATWPKEVRKIASDLL-SNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRS 472
Query: 360 YSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G + IIF TK QLA L GA A+HGD Q++R+ L+ FRSG+ LVAT
Sbjct: 473 QEPGSKIIIFCSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVAT 532
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLDI D+++++ + P VE Y+HR GRTGRAG
Sbjct: 533 DVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAG 570
>gi|423125943|ref|ZP_17113622.1| cold-shock DEAD box protein A [Klebsiella oxytoca 10-5250]
gi|376398044|gb|EHT10672.1| cold-shock DEAD box protein A [Klebsiella oxytoca 10-5250]
Length = 653
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 201/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ QS RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQSLREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|423110529|ref|ZP_17098224.1| cold-shock DEAD box protein A [Klebsiella oxytoca 10-5243]
gi|376379094|gb|EHS91849.1| cold-shock DEAD box protein A [Klebsiella oxytoca 10-5243]
Length = 650
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 201/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ QS RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQSLREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|397660145|ref|YP_006500847.1| cold-shock DEAD-box protein A [Klebsiella oxytoca E718]
gi|394348216|gb|AFN34337.1| Cold-shock DEAD-box protein A [Klebsiella oxytoca E718]
Length = 653
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 201/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ QS RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQSLREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|261342608|ref|ZP_05970466.1| cold-shock DEAD box protein A [Enterobacter cancerogenus ATCC
35316]
gi|288315255|gb|EFC54193.1| cold-shock DEAD box protein A [Enterobacter cancerogenus ATCC
35316]
Length = 629
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LKAPILEALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLHNIDPDL 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 73 ----------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|402840272|ref|ZP_10888741.1| cold-shock DEAD-box protein A [Klebsiella sp. OBRC7]
gi|402287222|gb|EJU35682.1| cold-shock DEAD-box protein A [Klebsiella sp. OBRC7]
Length = 653
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 201/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ QS RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQSLREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|415727282|ref|ZP_11471380.1| ATP-dependent RNA helicase [Gardnerella vaginalis 00703Dmash]
gi|388062179|gb|EIK84797.1| ATP-dependent RNA helicase [Gardnerella vaginalis 00703Dmash]
Length = 571
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 162/476 (34%), Positives = 249/476 (52%), Gaps = 42/476 (8%)
Query: 37 KSSDKKKSKKKESSKKRKESEIEEEEE---------RSETSSELGEPVNLKSE--KEKKK 85
+ ++K + K ++ + + +E+ I E E+ + + + N K + K K
Sbjct: 30 RKAEKAREKARQKALRYEETAIREAEQDFTKKDFAKKGFAKKDFAKKENNKKDFAKNNKS 89
Query: 86 KKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD 145
+ + + P++ +E +E + ++ + PL E L++ G + FPIQ T L
Sbjct: 90 SQNSVIIPDSAIESRENYSDD--VTFTQLGVPDPLVEVLRADGKTTAFPIQQATLPDSLQ 147
Query: 146 GSDLVGRARTGQGKTLAFVLPILESL--------TNGPTKASKKTGYGRAPSVLVLLPTR 197
G++++GR RTG GKTLAF +P++ L +G + G AP ++L PTR
Sbjct: 148 GANILGRGRTGSGKTLAFSIPLVSRLAENFVDLINHGKNSRKNEGGDIPAPRAMILAPTR 207
Query: 198 ELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI 257
EL Q+ + A G+ + +YGG Y Q +LKKG +V+ PGR++D I +G +
Sbjct: 208 ELVHQIDDVIAPLAAAYGMRTVTVYGGVRYQRQVSQLKKGAQIVLACPGRLEDLIRQGAL 267
Query: 258 DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLK 317
L + VLDEADEM MGF+ V +L +V D N Q +LFSATL V + +FL
Sbjct: 268 TLEKVMVSVLDEADEMADMGFLPAVTRLLEQV-DPNG-QRMLFSATLDKQVSTLVNRFLP 325
Query: 318 SDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG-RTIIFTETKESA 376
+ I V + + T HI SS + +V +R +SG R+I FT TK A
Sbjct: 326 N--AVIHAVDDADSQVDTMTHHI-FAVSSGDKYEV----LRKLASGCKRSIFFTRTKYQA 378
Query: 377 SQLADL-----LPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLI 431
+A +P A L G++ Q+QR+ LA F G LVAT+VAARG+DI+DV L+
Sbjct: 379 KNMAKKFVQQGIP-AVDLQGNLSQNQRDRHLAVFSEGLVRVLVATDVAARGIDISDVALV 437
Query: 432 IQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSA 487
+Q EPP D ++++HRSGRT RAG E V V+P K AA +L +G++A
Sbjct: 438 VQTEPPEDPKSFLHRSGRTARAGEEG-----DVVTLVLPNQKRAAHTMLRRAGINA 488
>gi|333925321|ref|YP_004498900.1| DEAD/DEAH box helicase [Serratia sp. AS12]
gi|333930274|ref|YP_004503852.1| DEAD/DEAH box helicase domain-containing protein [Serratia
plymuthica AS9]
gi|386327145|ref|YP_006023315.1| DEAD/DEAH box helicase [Serratia sp. AS13]
gi|333471881|gb|AEF43591.1| DEAD/DEAH box helicase domain protein [Serratia plymuthica AS9]
gi|333489381|gb|AEF48543.1| DEAD/DEAH box helicase domain protein [Serratia sp. AS12]
gi|333959478|gb|AEG26251.1| DEAD/DEAH box helicase domain protein [Serratia sp. AS13]
Length = 657
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 202/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQA +L+G D++G A+TG GKT AF LP+L +L
Sbjct: 14 LSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNL---- 69
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
AS K AP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 70 -DASLK-----APQILVLAPTRELAVQVAEAMTDFSKHMTGVNVVALYGGQRYDVQLRAL 123
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG ++LS+L VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 124 RQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEH- 182
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 183 -QTALFSATMPEAIRRITRRFMKDPQEV-------RIQSSITTR---------------P 219
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 220 DISQSYWTAQGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGD 279
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 280 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 339
Query: 453 AG 454
AG
Sbjct: 340 AG 341
>gi|183600372|ref|ZP_02961865.1| hypothetical protein PROSTU_03938 [Providencia stuartii ATCC 25827]
gi|386743799|ref|YP_006216978.1| ATP-dependent RNA helicase DeaD [Providencia stuartii MRSN 2154]
gi|188020163|gb|EDU58203.1| DEAD/DEAH box helicase [Providencia stuartii ATCC 25827]
gi|384480492|gb|AFH94287.1| ATP-dependent RNA helicase DeaD [Providencia stuartii MRSN 2154]
Length = 622
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 203/364 (55%), Gaps = 61/364 (16%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S + L G E PIQ +++DG+D++G A+TG GKT AF LP+L ++
Sbjct: 14 LSASILTALNDLGYEKPSPIQKQCIPLLMDGNDVLGMAQTGSGKTAAFSLPLLHNIDPDL 73
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+AP +LVL PTRELA QV E DF + V + LYGG Y Q
Sbjct: 74 ----------KAPQILVLAPTRELAVQVAEAMGDFSKHMSRVNV--VALYGGQRYDVQLR 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF+EDVE I+ ++
Sbjct: 122 ALRQGPQVVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAE 181
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K K+ +++AS R
Sbjct: 182 H--QTALFSATMPEPIRRITRRFMKEPKEI-------RIQASITTR-------------- 218
Query: 353 IPDIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y + G R IIF TK + ++A+ L + AL+
Sbjct: 219 -PDIAQSYWTVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN 277
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ Q+ RE TL + G+ L+AT+VAARGLD++ + L++ + P D E+Y+HR GRT
Sbjct: 278 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRT 337
Query: 451 GRAG 454
GRAG
Sbjct: 338 GRAG 341
>gi|357484805|ref|XP_003612690.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355514025|gb|AES95648.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 523
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185
KG E PIQ+ + +LDG DL+G A TG GKTLAF +P + + N + SK + G
Sbjct: 118 CKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHVMN--KRKSKGSSKG 175
Query: 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
R P L+L PTRELA+Q+ + G + G+ S CLYGG P AQ LK GID+VIGTP
Sbjct: 176 RNPLCLMLSPTRELAQQISDVLCDAGKSCGVESVCLYGGTPKGAQISALKSGIDIVIGTP 235
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305
GRI+D +E G L + F VLDEAD ML MGF + V ILG+ A Q ++FSAT P
Sbjct: 236 GRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSAR--QMVMFSATWP 293
Query: 306 SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY--SSG 363
V H++ +F+ + + +VG+E + A+ +V IV R + + ++ Y S
Sbjct: 294 LAVHHLAQEFMDPNPVKV-VVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQK 352
Query: 364 GRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
R ++F K +++ +L A ++ GD Q +R L+ F++G ++AT+VA
Sbjct: 353 NRVLVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGSCPLMIATDVA 412
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
ARGLDI DV+++I P +E Y+HR GRTGRAG
Sbjct: 413 ARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAG 447
>gi|375257534|ref|YP_005016704.1| ATP-dependent RNA helicase DeaD [Klebsiella oxytoca KCTC 1686]
gi|365907012|gb|AEX02465.1| ATP-dependent RNA helicase DeaD [Klebsiella oxytoca KCTC 1686]
Length = 650
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 201/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ QS RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQSLREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|270265065|ref|ZP_06193328.1| cold-shock DEAD box protein A [Serratia odorifera 4Rx13]
gi|421781347|ref|ZP_16217814.1| ATP-dependent RNA helicase DeaD [Serratia plymuthica A30]
gi|270040999|gb|EFA14100.1| cold-shock DEAD box protein A [Serratia odorifera 4Rx13]
gi|407756556|gb|EKF66672.1| ATP-dependent RNA helicase DeaD [Serratia plymuthica A30]
Length = 655
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 202/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQA +L+G D++G A+TG GKT AF LP+L +L
Sbjct: 14 LSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNL---- 69
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
AS K AP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 70 -DASLK-----APQILVLAPTRELAVQVAEAMTDFSKHMTGVNVVALYGGQRYDVQLRAL 123
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG ++LS+L VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 124 RQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEH- 182
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 183 -QTALFSATMPEAIRRITRRFMKDPQEV-------RIQSSITTR---------------P 219
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 220 DISQSYWTAQGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGD 279
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 280 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 339
Query: 453 AG 454
AG
Sbjct: 340 AG 341
>gi|89053691|ref|YP_509142.1| DEAD/DEAH box helicase [Jannaschia sp. CCS1]
gi|88863240|gb|ABD54117.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
Length = 644
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 142/337 (42%), Positives = 187/337 (55%), Gaps = 20/337 (5%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES PIQA L G D++G A+TG GKT +F LP++ L G +A R
Sbjct: 30 GYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMITMLARGRARA-------RM 82
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
P LVL PTRELA QV E+FD+Y V LT L GG + QE + KG+DV+I TPGR
Sbjct: 83 PRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLIGGVSFKEQEQAIDKGVDVLIATPGR 142
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ DH ERG + L+ +K V+DEAD ML MGF+ D+E I G V QTL FSAT+
Sbjct: 143 LLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFTR--QTLFFSATMAPE 200
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS-SSARSQVIPDIIRCYSSGG-- 364
++ I+ FL + +K I++ A+ R I A++++ D++R +
Sbjct: 201 IERITNTFLSNPEK-IEVERQSTTSATIEQRLIEFKAPRRDAQAKMKRDMLRAAITAEGD 259
Query: 365 ---RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
IIF K +A L A +HGD+ QS R TLAGFR G LVA++
Sbjct: 260 AFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAGFRDGSITLLVASD 319
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAARGLDI +V +I + P E Y+HR GRTGRAG
Sbjct: 320 VAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAG 356
>gi|381405877|ref|ZP_09930561.1| ATP-dependent RNA helicase DeaD [Pantoea sp. Sc1]
gi|380739076|gb|EIC00140.1| ATP-dependent RNA helicase DeaD [Pantoea sp. Sc1]
Length = 630
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 136/340 (40%), Positives = 200/340 (58%), Gaps = 26/340 (7%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L G PIQA +L G D++G A+TG GKT AF LP+L ++ P+
Sbjct: 19 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNNID--PSV---- 72
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
+AP +LVL PTRELA QV E + + GL LYGG Y Q L++G V
Sbjct: 73 ----KAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQGPQV 128
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ + + QT LF
Sbjct: 129 VVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGH--QTALF 186
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ I+ +F+K ++ ++++S R + +A + ++R
Sbjct: 187 SATMPEAIRRITKRFMKDPQEV-------RIQSSLTTRPDISQSYWTAYGRKTDALVRFL 239
Query: 361 SSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G+ L+
Sbjct: 240 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 299
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 300 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAG 339
>gi|317125686|ref|YP_004099798.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
gi|315589774|gb|ADU49071.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
43043]
Length = 562
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/361 (38%), Positives = 210/361 (58%), Gaps = 14/361 (3%)
Query: 104 ESEHPNA----VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
++ HP+A + F + + L GI FPIQAMT + L G D++G+A+TG GK
Sbjct: 6 DTSHPHAPEITFADFPVHPEIISALAEWGIIHPFPIQAMTLPVALSGHDIIGQAKTGTGK 65
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
TL F +P+L S+ P L + PTRELA QV D + G G+
Sbjct: 66 TLGFGVPMLNSVVAPGDAGFDALPRPGKPQALAVAPTRELAVQVSGDLERAGRHRGIRVL 125
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
+YGG Y Q L++G++VV+GTPGR+ D ++G++DLS K VLDEADEML +GF+
Sbjct: 126 TVYGGRAYEPQVDALRRGVEVVVGTPGRLIDLAKQGHLDLSQAKVVVLDEADEMLDLGFL 185
Query: 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NV 337
DVE ++ + A++ QT+LFSAT+P + ++ +++ + I +G+E A T V
Sbjct: 186 PDVETLM-SLTPASR-QTMLFSATMPGAIVTLARRYM-TQPTHIRAMGDENENAHTVKAV 242
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDI 393
V + + +++ +++ G TIIF+ TK +A+++AD L A A+HGD+
Sbjct: 243 EQFVYRAHALDKVEMLSRMLQAKDR-GLTIIFSRTKRTAAKVADELGERGFAAAAIHGDL 301
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q RE L FR+GK LVAT+VAARG+D+++V +I + P D + Y+HR GRT RA
Sbjct: 302 GQGAREQALRAFRNGKVDVLVATDVAARGIDVDNVTHVINFQCPEDEKTYLHRIGRTARA 361
Query: 454 G 454
G
Sbjct: 362 G 362
>gi|46200197|ref|YP_005864.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
gi|46197825|gb|AAS82237.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
Length = 517
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 141/337 (41%), Positives = 192/337 (56%), Gaps = 21/337 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + E L +G+ + PIQA + L+G DL+G+ARTG GKTLAF LPI E L
Sbjct: 13 FPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAP 72
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+ GR P LVL PTRELA QV + A L +YGG Y Q+
Sbjct: 73 SQER-------GRKPRALVLTPTRELALQVASELTAV--APHLKVVAVYGGTGYGKQKEA 123
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L +G D V+ TPGR D++ +G +DLS ++ VLDEADEML MGF E+VE +L +
Sbjct: 124 LLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR 183
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QTLLFSATLPSW K ++ +++K + I+++ +E + +P R +V+
Sbjct: 184 --QTLLFSATLPSWAKRLAERYMK-NPVLINVIKDEPVTYEEEA----VPAPVRGRLEVL 236
Query: 354 PDIIRCYSSGGRTIIFT----ETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGK 409
D++ +S R ++FT ET+E A L L A+ALHGD+ Q +RE L FR G+
Sbjct: 237 SDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE 295
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
LVAT+VAARGLDI V L++ P EAY HR
Sbjct: 296 VRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHR 332
>gi|393905962|gb|EJD74119.1| DEAD box polypeptide 17, variant 1 [Loa loa]
Length = 553
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 196/327 (59%), Gaps = 21/327 (6%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQ++++ + L G D+V A+TG GKT AF+LP + P + G+ ++PSVLVLL
Sbjct: 154 IQSISWPIALSGRDMVSIAKTGSGKTFAFILPAIVHTAGQPPR-----GHQKSPSVLVLL 208
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA+QV E Y A L+ CL+GGAP AQ L++G+D++I TPGR+ D +E
Sbjct: 209 PTRELAQQVEEVAKDYCRATELSITCLFGGAPKAAQARDLERGVDIIIATPGRLMDFLEV 268
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G DL + VLDEAD ML MGF + I+ ++ QTL+FSAT P V+ ++
Sbjct: 269 GKTDLRRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR--QTLMFSATWPKDVRKLAMD 326
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ----VIPDIIRCYSSGGRTIIFT 370
FL +D ++ VG+ ++ A+ N+ IV S + Q ++ DI+ +TIIF
Sbjct: 327 FL-ADAAHLN-VGSLELSANHNITQIVEIIDESNKQQRLMAILSDIMN--KEDCKTIIFV 382
Query: 371 ETKESASQLA-----DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425
ETK A L D P A +HGD QS+R+ L+ FRSGK L+AT+VAARGLD+
Sbjct: 383 ETKRKADDLTRWMRRDGWP-ALCIHGDKGQSERDWALSEFRSGKTPILLATDVAARGLDV 441
Query: 426 NDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+D++ +I + + E Y+HR GRTGR
Sbjct: 442 DDIKYVINFDYSNNSEDYVHRIGRTGR 468
>gi|400535731|ref|ZP_10799267.1| rhlE [Mycobacterium colombiense CECT 3035]
gi|400330774|gb|EJO88271.1| rhlE [Mycobacterium colombiense CECT 3035]
Length = 518
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/346 (40%), Positives = 199/346 (57%), Gaps = 23/346 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L KGIES F IQ +T M L G DL+G+ARTG GKT AF +P+L+ +T+G T A G
Sbjct: 27 LAEKGIESPFAIQELTLPMALAGDDLIGQARTGMGKTFAFGVPLLQRITSG-TAARPLNG 85
Query: 184 YGRAPSVLVLLPTRELAKQVHEDF-----------DVYGGAVGLTSCCLYGGAPYHAQEF 232
RA L+++PTREL QV +D D G L+ +YGG PY Q
Sbjct: 86 TPRA---LIVVPTRELCLQVTDDLTLAAKYLSADKDDAGRDRALSVVPIYGGRPYEPQIE 142
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L+ G DVV+GTPGR+ D ++ ++ L L VLDEADEML +GF+ D+E IL ++
Sbjct: 143 ALRAGADVVVGTPGRLLDLSQQNHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIP-- 200
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
Q++LFSAT+P + ++ F+ + T V++ V + + ++
Sbjct: 201 TDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQY-VYRAHALDKVEL 259
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ +++ G T+IFT TK +A ++AD L A+HGD+ Q+ RE L FR+G
Sbjct: 260 VSRVLQAEGRGA-TMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQAAREKALKAFRTG 318
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARG+DI+D+ +I + P D +AY+HR GRTGRAG
Sbjct: 319 DIDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAG 364
>gi|354581663|ref|ZP_09000566.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353200280|gb|EHB65740.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 524
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 137/344 (39%), Positives = 199/344 (57%), Gaps = 33/344 (9%)
Query: 123 KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGPTKASKK 181
KLK +GI P+Q T ++L+G D++ RARTG GKTLAF+LPIL+ + N P
Sbjct: 16 KLKEQGIAVPTPVQQETIPLLLEGKDVIARARTGTGKTLAFMLPILQHIDPNRPF----- 70
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFD--VYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
P L++ PTRELA Q+ E+ G G+ +YGG Q KL+ G
Sbjct: 71 ------PQALIIAPTRELALQITEEARKLTAGEPDGIKILAVYGGQDVEKQLRKLEGGRH 124
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
++IGTPGR+ DH+ RG ++L +K VLDEAD+ML MGF+ +VE ++ + + QT+L
Sbjct: 125 LIIGTPGRLLDHLRRGTLELGGVKMLVLDEADQMLHMGFLAEVEALIDAL--PYRRQTML 182
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST-----NVRHIVLPCSSSARSQVIP 354
FSAT+P+ VK ++ +++ K D+V +K ++ ++ +V+ C+ ++ +
Sbjct: 183 FSATMPAGVKQLAARYMN---KPEDIV----IKGASPIPLEQIKQVVVECTDRSKQDALR 235
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSGKF 410
+I Y IIF TK AS L + L A LHGD+ Q++RE + FR K
Sbjct: 236 AMIERYRPF-LAIIFCRTKRRASALNEALLAAGYESDELHGDLSQAKREAVMKRFREAKL 294
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD+ V + + P DVE+YIHR GRTGRAG
Sbjct: 295 QLLVATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAG 338
>gi|332029665|gb|EGI69554.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
Length = 595
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 149/374 (39%), Positives = 210/374 (56%), Gaps = 29/374 (7%)
Query: 97 VEEQERGESEH-------PNAVSRF-RISVP---LREKLKSKGIESLFPIQAMTFDMVLD 145
+ EQ R E E PN V F P LRE +K +G IQA + + L
Sbjct: 107 IVEQYRAEKEITLRGKNIPNPVFDFDEAGFPDYVLRE-IKRQGFSEPTSIQAQGWPIALS 165
Query: 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205
G D+VG A TG GKTL+++LP + + + P K S+K G P LVL PTRELA+Q+ +
Sbjct: 166 GRDMVGIASTGSGKTLSYILPAIVHINSQP-KLSRKDG----PIALVLAPTRELAQQIQQ 220
Query: 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265
D +G + G+ + CLYGGAP AQ L G+++VI TPGR+ D +E G +L +
Sbjct: 221 VADDFGHSSGIRNTCLYGGAPKGAQARDLDGGVEIVIATPGRLLDFLESGKTNLKRCTYL 280
Query: 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325
VLDEAD ML MGF + I+ ++ QTL++SAT P VK+++ FLK D I+
Sbjct: 281 VLDEADRMLDMGFEPQIRKIIEQIRPDR--QTLMWSATWPKEVKNLAEDFLK-DYAQIN- 336
Query: 326 VGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR--CYSSGGRTIIFTETKESASQLA--- 380
VG+ ++ A+ N+ I+ C + + +++ S +TI+F ETK ++
Sbjct: 337 VGSLQLSANHNILQIIDVCQDYEKENKLSTLLKEIMAESENKTIVFIETKRRVDEITRKM 396
Query: 381 --DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR 438
D P A +HGD Q +R+ L FRSGK LVAT+VAARGLD+ DV+ +I + P
Sbjct: 397 KRDGWP-AVCIHGDKTQQERDWVLQDFRSGKAPILVATDVAARGLDVEDVKFVINFDYPS 455
Query: 439 DVEAYIHRSGRTGR 452
E Y+HR GRTGR
Sbjct: 456 CSEDYVHRIGRTGR 469
>gi|423116528|ref|ZP_17104219.1| cold-shock DEAD box protein A [Klebsiella oxytoca 10-5245]
gi|376378094|gb|EHS90858.1| cold-shock DEAD box protein A [Klebsiella oxytoca 10-5245]
Length = 628
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 201/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ QS RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQSLREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|423105039|ref|ZP_17092741.1| cold-shock DEAD box protein A [Klebsiella oxytoca 10-5242]
gi|376381805|gb|EHS94541.1| cold-shock DEAD box protein A [Klebsiella oxytoca 10-5242]
Length = 643
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 201/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ QS RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQSLREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
Length = 538
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 137/354 (38%), Positives = 207/354 (58%), Gaps = 24/354 (6%)
Query: 111 VSRFR---ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
+ RF I+ +++ + G E PIQA + ++L+G D++G+A+TG GKT AF +PI
Sbjct: 3 IKRFEDLDINQNIKKAIAEMGFEEPSPIQAKSIPVILEGKDVIGQAQTGTGKTAAFSIPI 62
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAP 226
LE + R+ +VL PTRELA QV ++ + G+ + +YGG P
Sbjct: 63 LEKIDPN----------DRSLQAIVLCPTRELAIQVSQEIRKLAKYMQGIKTLPIYGGQP 112
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
Q LK G+ V+IGTPGR DHI+R I ++K VLDEADEML MGF ED+E IL
Sbjct: 113 IDRQIKALKGGVQVIIGTPGRTIDHIKRKTIKPGNVKMVVLDEADEMLDMGFREDIETIL 172
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346
V + QT FSAT+P + ++ K+ +++ + I +V E N++ + +
Sbjct: 173 ENVPEER--QTTFFSATMPKAILELTKKY-QNEPEHIKVVRKEL--TVENIKQYYIETRA 227
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
S + +V+ +I Y+ +++F TK+ A +L L G A ALHGD++Q QR++ +
Sbjct: 228 SNKIEVLSRLIDVYNPK-LSVVFCNTKKGADELVGELQGRGYFADALHGDLKQVQRDIVM 286
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
FR+G LVAT+VAARG+D++DV+ + + P+D E Y+HR GRTGRAG E
Sbjct: 287 DKFRNGTIDILVATDVAARGIDVDDVECVFNFDLPQDEEYYVHRIGRTGRAGRE 340
>gi|379748729|ref|YP_005339550.1| rhlE [Mycobacterium intracellulare ATCC 13950]
gi|379756031|ref|YP_005344703.1| rhlE [Mycobacterium intracellulare MOTT-02]
gi|379763565|ref|YP_005349962.1| rhlE [Mycobacterium intracellulare MOTT-64]
gi|387877380|ref|YP_006307684.1| rhlE [Mycobacterium sp. MOTT36Y]
gi|406032274|ref|YP_006731166.1| DEAD-box ATP-dependent RNA helicase cshA [Mycobacterium indicus
pranii MTCC 9506]
gi|378801093|gb|AFC45229.1| rhlE [Mycobacterium intracellulare ATCC 13950]
gi|378806247|gb|AFC50382.1| rhlE [Mycobacterium intracellulare MOTT-02]
gi|378811507|gb|AFC55641.1| rhlE [Mycobacterium intracellulare MOTT-64]
gi|386790838|gb|AFJ36957.1| rhlE [Mycobacterium sp. MOTT36Y]
gi|405130821|gb|AFS16076.1| DEAD-box ATP-dependent RNA helicase cshA [Mycobacterium indicus
pranii MTCC 9506]
Length = 509
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/341 (40%), Positives = 199/341 (58%), Gaps = 18/341 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L KGIES F IQ +T + L G DL+G+ARTG GKT AF +P+L+ +T+G T A G
Sbjct: 25 LAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITSG-TAARPLNG 83
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG------LTSCCLYGGAPYHAQEFKLKKG 237
RA L+++PTREL QV +D + + L+ +YGG PY AQ L+ G
Sbjct: 84 TPRA---LIVVPTRELCLQVTDDLALAAKHLTADEGRRLSVVPIYGGRPYEAQIEALRAG 140
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++ Q+
Sbjct: 141 ADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIP--VDRQS 198
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+LFSAT+P + ++ F+ + T V++ + + +++ I+
Sbjct: 199 MLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQY-AYRAHALDKVELVSRIL 257
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G T+IFT TK +A ++AD L A+HGD+ Q RE L FR+G L
Sbjct: 258 QAEGRGA-TMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRTGDIDVL 316
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARG+DI+DV +I + P D +AY+HR GRTGRAG
Sbjct: 317 VATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAG 357
>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 524
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 134/339 (39%), Positives = 198/339 (58%), Gaps = 19/339 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E + + G E IQA + ++L+G+D++G+A+TG GKTLAF P+L SK
Sbjct: 17 EAIDNMGFEEPSQIQAESIPVILEGNDIIGQAQTGTGKTLAFGAPML----------SKI 66
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
T + S L+L PTRELA QV+++ + + +YGG P Q LK+GI++V
Sbjct: 67 TPKNKHISALILTPTRELAIQVNDELSRIAKFMKILLLPIYGGQPIERQIKSLKRGINIV 126
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGRI DH+ R +DLS+++F +DEADEML MGF+ED+E I+ K + N+ QTLLFS
Sbjct: 127 VGTPGRILDHLHRKTLDLSNIEFLTIDEADEMLDMGFIEDIEEII-KASNPNR-QTLLFS 184
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P VK +++K++ S+ K I + N T + R + + I+
Sbjct: 185 ATMPDQVKRLASKYMSSNTKYITIAKNTLTVEKT--KQYYYEIKHKDRFESLCRILDV-D 241
Query: 362 SGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
IIF +TK +L + + +HGD+ Q+QR TL F+ G LVAT+
Sbjct: 242 EPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLDFLVATD 301
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
VAARG+D+ +V +I + P+D E+Y+HR GRTGRA E
Sbjct: 302 VAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKE 340
>gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-23m63]
gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
Length = 537
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 135/346 (39%), Positives = 202/346 (58%), Gaps = 21/346 (6%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS +++ + G E PIQA + +L G D++G+A+TG GKT AF +PILE++
Sbjct: 11 ISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSIPILETIDPN- 69
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
R+ +VL PTRELA QV + + + G+ + +YGG P Q L
Sbjct: 70 ---------NRSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKSL 120
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K G+ VVIGTPGR DHI R + + ++K +LDEADEML MGF ED+E+IL K+ +
Sbjct: 121 KSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSKIPEER- 179
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT FSAT+P + ++ ++ K D + I +V E +N + + SS + +V+
Sbjct: 180 -QTTFFSATMPRGILELTKRYQK-DPEHIKVVRKEL--TVSNTKQYYIETRSSNKLEVLC 235
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKF 410
++ Y +++F TK A +L L A ALHGD++Q+QR++ + FR+G
Sbjct: 236 RLVDVYDPK-LSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTI 294
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
LVAT+VAARG+D++DV+ + + P+D E Y+HR GRTGRAG E
Sbjct: 295 DILVATDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGRE 340
>gi|284006674|emb|CBA71936.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase)
[Arsenophonus nasoniae]
Length = 615
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 203/364 (55%), Gaps = 61/364 (16%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQ +LDG D++G A+TG GKT AF LP+L ++
Sbjct: 19 LSTPILSALNDLGYEKPSPIQQQCIPYLLDGCDVLGMAQTGSGKTAAFSLPLLHNIDITL 78
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+AP +LVL PTRELA QV E +F + +V + LYGG Y +Q
Sbjct: 79 ----------KAPQILVLAPTRELAVQVAEAMGEFSKHMRSVNV--VALYGGQRYDSQLR 126
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +V+GTPGR+ DH++RG ++LS L+ VLDEADEMLRMGF+EDVE I+ ++
Sbjct: 127 ALRQGPQIVVGTPGRLLDHLKRGTLNLSHLRGLVLDEADEMLRMGFIEDVENIMSQIPSE 186
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+KS K+ I + S + R
Sbjct: 187 H--QTALFSATMPEAIRRITRRFMKSPKE------------------ISIQSSVTTR--- 223
Query: 353 IPDIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y S G R IIF TK + ++A+ L + AL+
Sbjct: 224 -PDITQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSSALN 282
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRT
Sbjct: 283 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRT 342
Query: 451 GRAG 454
GRAG
Sbjct: 343 GRAG 346
>gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium
linens BL2]
Length = 606
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 137/341 (40%), Positives = 199/341 (58%), Gaps = 24/341 (7%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ ++++G E+ PIQA T +++G D++G A+TG GKT AF LP L L
Sbjct: 26 QAVQAQGYETPTPIQAETIPALVEGRDVIGLAQTGTGKTAAFALPALSDLAEA------- 78
Query: 182 TGYGRA---PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKG 237
GRA P LVL PTRELA QV E F Y + + +YGG Y Q LK+G
Sbjct: 79 ---GRANDGPFALVLTPTRELAIQVAEAFTSYATNLDDFSVLPIYGGQAYGPQLSGLKRG 135
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
VV+GTPGR+ DH+++G++ L SL+ +LDEADEML+MGF ED+E I + D+ +V
Sbjct: 136 AQVVVGTPGRVIDHLKKGSLKLGSLRHLILDEADEMLKMGFAEDIEEIFSQSGDSRQVA- 194
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P+ + ++ K+L + K ++ K + +N+R S + + I+
Sbjct: 195 -LFSATMPTSIHRLTGKYLNNPK---EVRVASKSQTGSNIRQRYHMVQHSHKLDALTRIL 250
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G I+F TK++ +LA+ L A A++GDI Q RE T+ R+GK L
Sbjct: 251 EVEEYEG-IIMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDIL 309
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 310 VATDVAARGLDVERITLVVNFDIPHDTESYVHRIGRTGRAG 350
>gi|372275450|ref|ZP_09511486.1| ATP-dependent RNA helicase DeaD [Pantoea sp. SL1_M5]
gi|390436775|ref|ZP_10225313.1| ATP-dependent RNA helicase DeaD [Pantoea agglomerans IG1]
Length = 646
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 137/340 (40%), Positives = 199/340 (58%), Gaps = 26/340 (7%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L G PIQA +L G D++G A+TG GKT AF LP+L ++ PT
Sbjct: 19 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNID--PTV---- 72
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
+AP +LVL PTRELA QV E + + GL LYGG Y Q L++G V
Sbjct: 73 ----KAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQGPQV 128
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ + QT LF
Sbjct: 129 VVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPADH--QTALF 186
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ I+ +F+K ++ ++++S R + +A + ++R
Sbjct: 187 SATMPEAIRRITKRFMKDPQEV-------RIQSSLTTRPDISQSYWTAYGRKTDALVRFL 239
Query: 361 SSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G+ L+
Sbjct: 240 EAEDFDAAIIFVRTKNATMEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 299
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 300 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAG 339
>gi|417748952|ref|ZP_12397364.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp.
paratuberculosis S397]
gi|336459520|gb|EGO38457.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 505
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 135/341 (39%), Positives = 196/341 (57%), Gaps = 18/341 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L KGI+ F IQ +T + L G DL+G+ARTG GKT AF +P+L+ +T G +
Sbjct: 25 LDEKGIQHPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITAG----TAPRA 80
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYG------GAVGLTSCCLYGGAPYHAQEFKLKKG 237
P LV++PTREL QV +D + G L+ +YGG PY Q L+ G
Sbjct: 81 LNGTPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPIYGGRPYEPQIDALRAG 140
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++ D Q+
Sbjct: 141 ADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPDDR--QS 198
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+LFSAT+P + ++ F+ + T V++ V + + +++ ++
Sbjct: 199 MLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQY-VYRAHALDKVELVSRVL 257
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ S G T++FT TK +A ++AD L A+HGD+ Q RE L FR+G L
Sbjct: 258 QAESRGA-TMLFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRTGDIDVL 316
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARG+DI+DV +I + P D +AY+HR GRTGRAG
Sbjct: 317 VATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAG 357
>gi|383806492|ref|ZP_09962054.1| ATP-dependent RNA helicase [Candidatus Aquiluna sp. IMCC13023]
gi|383299662|gb|EIC92275.1| ATP-dependent RNA helicase [Candidatus Aquiluna sp. IMCC13023]
Length = 515
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 195/340 (57%), Gaps = 19/340 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L ++L G + FPIQ+ T + G ++GR +TG GKT+AF +P++ L KA
Sbjct: 95 LTQELAKMGAATPFPIQSATIPAAMAGRHVLGRGKTGSGKTIAFGVPLVAFLA----KAG 150
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ P LVL PTRELA+Q+ +VG + +YGG P H Q LK+G+D
Sbjct: 151 NQPRVPLKPKALVLAPTRELAQQIDRTLSQLAKSVGFYTTTIYGGVPQHRQVEALKRGVD 210
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+ I TPGR++D + +G IDLS L+ V+DEAD M +GFVE V IL E A Q LL
Sbjct: 211 IAIATPGRLEDLMAQGKIDLSGLERVVVDEADHMCELGFVEPVNRIL---EAAGDSQKLL 267
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSATL S V + KF+ S ++ G ++ S+++ H VL RS + R
Sbjct: 268 FSATLDSEVAQLVKKFMPS-PYVYEVPG--EVNESSDIEHRVLVMDPKDRSAI---FHRL 321
Query: 360 YSSGGRTIIFTETKESASQLADLL-----PGARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G++I+F TK +A L+ L P AR LHGD+ Q+QR L F G +V
Sbjct: 322 VQGSGKSIVFVRTKLTAEALSSSLNDAGVPTAR-LHGDLNQAQRTKNLERFIKGSARVMV 380
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARG+ ++DV+L+IQ + P + + Y+HR+GRTGRAG
Sbjct: 381 ATDVAARGIHVDDVKLVIQLDLPEEYKTYLHRAGRTGRAG 420
>gi|357022809|ref|ZP_09085031.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
thermoresistibile ATCC 19527]
gi|356477430|gb|EHI10576.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
thermoresistibile ATCC 19527]
Length = 481
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 195/340 (57%), Gaps = 18/340 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT AF +P+L+ +T + TG
Sbjct: 4 LAEHGIEHPFAIQELTLPLALAGEDLIGQARTGMGKTFAFGVPLLQRITTDTER--PLTG 61
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
RA LV++PTREL QVH+D + G L+ +YGG PY Q L+KG
Sbjct: 62 IPRA---LVVVPTRELCLQVHDDLATAAKYLKAGDRKLSVVSIYGGRPYEPQIEALQKGA 118
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D ++ ++ L L VLDEADEML +GF+ D+E IL ++ + K Q +
Sbjct: 119 DVVVGTPGRLLDLAQQNHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPE--KRQAM 176
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ F+ I + + V + + ++I I++
Sbjct: 177 LFSATMPDPIITLARTFMNQPTH-IRAEAPQSSAVHDKTKQFVYRAHALDKVEMISRILQ 235
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T+IFT TK +A ++AD L A+HGD+ Q RE L FR+G+ LV
Sbjct: 236 ARGRGA-TMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRAGEIDVLV 294
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARG+DI DV +I + P D +AY+HR GRTGRAG
Sbjct: 295 ATDVAARGIDIEDVTHVINYQIPEDEQAYVHRIGRTGRAG 334
>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
Length = 547
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 134/332 (40%), Positives = 193/332 (58%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E PIQA +VL+G D++G+A+TG GKT AF +P+LE + +
Sbjct: 23 GYEQPSPIQAKAIPVVLEGYDVIGQAQTGTGKTAAFSIPLLEKIDPSDKRLQ-------- 74
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
+VL PTRELA QV E+ + G+ + +YGG P Q LK G+ V+IGTPG
Sbjct: 75 --AIVLCPTRELAIQVSEEVRKLAKYLHGVKTLPIYGGQPIDRQIKALKGGVQVIIGTPG 132
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHI R + S++K V+DEADEML MGF ED+E IL + QT LFSAT+P
Sbjct: 133 RVIDHINRKTLKPSTVKMVVMDEADEMLDMGFREDIETILSST--PQERQTSLFSATMPK 190
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ ++ K+ K+ + + K N++ + S + +V+ +I Y+ T
Sbjct: 191 AILELTQKY---QKEPVHIKVVRKELTVNNIKQFYIETRKSNKLEVLTRLIDVYNPK-LT 246
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
++FT TK+ A +L L GA +LHGD++Q QR++ + FR G LVAT+VAARG
Sbjct: 247 VVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHGTIDILVATDVAARG 306
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+D++DV+ +I E P+D E Y+HR GRTGRAG
Sbjct: 307 IDVDDVECVINYELPQDEEYYVHRIGRTGRAG 338
>gi|149184|gb|AAA61345.1| RNA helicase [Klebsiella pneumoniae]
Length = 659
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 201/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +LDG D++G A+TG GKT AF LP+L ++ P
Sbjct: 29 LKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--P 86
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
RAP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 87 EL--------RAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRAL 138
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 139 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 197
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 198 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 234
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 235 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 294
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE L + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 295 MNQALREQALERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 354
Query: 453 AG 454
AG
Sbjct: 355 AG 356
>gi|159903626|ref|YP_001550970.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9211]
gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9211]
Length = 604
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 141/346 (40%), Positives = 200/346 (57%), Gaps = 21/346 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F S L L+SKG + PIQ F ++ G DL+G+A+TG GKT AF LPILE +
Sbjct: 57 FGFSDDLINTLESKGYKDPTPIQKAAFPELMLGRDLLGQAQTGTGKTAAFALPILERIKQ 116
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEF 232
RAP VLVL PTRELA QV + F Y G + +YGG+ + AQ
Sbjct: 117 DT----------RAPQVLVLAPTRELAMQVADSFRAYAQGRPEVQVLAVYGGSDFRAQIN 166
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G+ +V+GTPGR+ DHI +G + L+ VLDEADEMLRMGF++D+E IL ++
Sbjct: 167 ALRRGVQIVVGTPGRVMDHIRQGTFIKTDLETLVLDEADEMLRMGFIDDIEWILEQL--P 224
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
K Q + FSAT+PS ++ +S ++L + I + +K R+IV+ +S + +
Sbjct: 225 AKRQMIFFSATMPSEIRRLSKQYL-HEPAEITIKAQKKEAQLIRQRYIVI--QNSFKLEA 281
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSG 408
+ ++ + G IIF TK +L++ L L+GD+ Q+ RE T+ R G
Sbjct: 282 LKRVLETTADEG-VIIFARTKAITLRLSESLEALNHNVAVLNGDVPQTLRERTIERLRQG 340
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD+ + L+I + P D EAY+HR GRTGRAG
Sbjct: 341 GIDILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAG 386
>gi|356513635|ref|XP_003525517.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 30-like [Glycine
max]
Length = 599
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 131/338 (38%), Positives = 199/338 (58%), Gaps = 15/338 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E + + G PIQA + M L G DL+G A TG GKTL+++LP L + P +
Sbjct: 181 EVIANLGFAEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPALVHVNAQP-----R 235
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
+G P VLVL PTRELA Q+ E+ +G S C+YGGAP Q +LK+G+++V
Sbjct: 236 LAHGDGPIVLVLAPTRELAVQIQEEALKFGSRANKRSTCIYGGAPKGPQIRELKRGVEIV 295
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
I TPGR+ D +E + +L + + VLDEAD ML MGF + I+ ++ QTLL+S
Sbjct: 296 IATPGRLIDMLEAQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDR--QTLLWS 353
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT P V+ ++ +FL++ K I +G+ +KA+ ++ +V + + + +++
Sbjct: 354 ATWPREVETLARQFLRNPYKVI--IGSPYLKANQSINQVVEVLTDMEKYNRLIRLLKEVM 411
Query: 362 SGGRTIIFTETKESASQL-----ADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G R +IF ETK+ Q+ D P A ++HGD Q++R+ LA F+SG+ + AT
Sbjct: 412 DGSRILIFMETKKGCDQVTRQMRVDGWP-ALSIHGDKNQAERDWVLAEFKSGRSPIMTAT 470
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLD+ D++ +I + P +E Y+HR GRTGRAG
Sbjct: 471 DVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAG 508
>gi|242240743|ref|YP_002988924.1| ATP-dependent RNA helicase DeaD [Dickeya dadantii Ech703]
gi|242132800|gb|ACS87102.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
Length = 621
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 203/362 (56%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQA +L+G D++G A+TG GKT AF LP+L ++ N
Sbjct: 13 LSAPILNALSDMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNV-NPE 71
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
KA P +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 72 LKA---------PQILVLAPTRELAVQVAEACGEFSKHMHGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G VV+GTPGR+ DH++RG +DLS+L VLDEADEMLRMGF+EDVE I+ ++ D +
Sbjct: 123 RQGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPDGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+ ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMNDPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTVYGMRKNEALIRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD++ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|302840989|ref|XP_002952040.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
nagariensis]
gi|300262626|gb|EFJ46831.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
nagariensis]
Length = 622
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 201/338 (59%), Gaps = 13/338 (3%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
++++ G + PIQA + + L G DLV A+TG GKT F+LP + + T+ +
Sbjct: 135 DEIRRAGFKYPTPIQAQAWPIALSGRDLVAIAKTGSGKTCGFLLPGMLHIQQ--TRKDPR 192
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
+G P++LVL PTRELA Q+ + D +G + G+ + C+YGGAP Q ++ G+ +V
Sbjct: 193 SG----PTLLVLAPTRELAVQIKTEADKFGRSSGIRNTCVYGGAPKGPQLRDIQHGVQIV 248
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
I TPGR+ D +E G + L + + VLDEAD ML MGF ++ I+ + + QTL FS
Sbjct: 249 IATPGRLNDFLEAGQVRLQQVSYLVLDEADRMLDMGFEPQIQRIVRTL--PRQRQTLFFS 306
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVG-NEKMKASTNV-RHIVLPCSSSARSQVIPDIIRC 359
AT P VKHI+ +F+ + + + G EK+ A+ ++ +H+++ SS + + IIR
Sbjct: 307 ATWPREVKHIAAQFVVNQTVHVFIGGVEEKLVANKSITQHVLVLNSSHEKFGELSRIIRS 366
Query: 360 YSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+G R IIF TK QL+ + A A+HGD +QS+R+ L F+ G+ LVAT
Sbjct: 367 KPAGTRIIIFCTTKRMCDQLSYQMSREFRAAAIHGDKKQSERDYVLQAFKDGRTPILVAT 426
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLDI +V ++ + P E YIHR GRTGRAG
Sbjct: 427 DVAARGLDIPNVAAVVNFDFPTGTEDYIHRIGRTGRAG 464
>gi|134102495|ref|YP_001108156.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
gi|291004114|ref|ZP_06562087.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
gi|133915118|emb|CAM05231.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
Length = 578
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 145/347 (41%), Positives = 196/347 (56%), Gaps = 22/347 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E+ PIQA T +L+G D++G A+TG GKT AF LPIL L
Sbjct: 17 LSEIGYETPSPIQAQTIPPLLEGHDVMGLAQTGTGKTAAFALPILSRLDLD--------- 67
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
+ P LVL PTRELA QV E F Y + G +YGG Y Q LK+G VV+
Sbjct: 68 -AKTPQALVLAPTRELAIQVAEAFQRYAAHLPGFHVLPIYGGQSYGPQLAGLKRGAHVVV 126
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ +G++DL+ LK VLDEADEMLRMGF+EDVE IL V + +V LFSA
Sbjct: 127 GTPGRVIDHLNKGSLDLTGLKNLVLDEADEMLRMGFIEDVETILQSVPEQRQVA--LFSA 184
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P ++ IS +L ++ I + + R+I P A+ + I+ +
Sbjct: 185 TMPPQIRKISQSYL-NEPVEISVKTKTTTATNITQRYI--PVRGPAKLDALTRILEVETF 241
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
I+F TK+ +LA+ L A A++GDI Q+ RE T+ R G+ LVAT+V
Sbjct: 242 DA-MIVFVRTKQLTEELAEKLQARGFSAAAINGDIPQAARERTIGHLREGRVDILVATDV 300
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS 465
AARGLD+ + ++ + P D E+Y+HR GRTGRAG + E I VS
Sbjct: 301 AARGLDVERISHVLNYDIPHDSESYVHRIGRTGRAG-RSGEAILFVS 346
>gi|126698341|ref|YP_001087238.1| ATP-dependent RNA helicase [Clostridium difficile 630]
gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-66c26]
gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
107932]
gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-63q42]
gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
43255]
gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-76w55]
gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-97b34]
gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-37x79]
gi|260682458|ref|YP_003213743.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260686057|ref|YP_003217190.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-32g58]
gi|384360039|ref|YP_006197891.1| putative ATP-dependent RNA helicase [Clostridium difficile BI1]
gi|423082109|ref|ZP_17070704.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 002-P50-2011]
gi|423085713|ref|ZP_17074155.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 050-P50-2011]
gi|423090412|ref|ZP_17078711.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 70-100-2010]
gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|357549359|gb|EHJ31206.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 002-P50-2011]
gi|357549630|gb|EHJ31476.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 050-P50-2011]
gi|357556521|gb|EHJ38116.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 70-100-2010]
Length = 537
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 135/346 (39%), Positives = 202/346 (58%), Gaps = 21/346 (6%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS +++ + G E PIQA + +L G D++G+A+TG GKT AF +PILE++
Sbjct: 11 ISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSIPILETIDPN- 69
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
R+ +VL PTRELA QV + + + G+ + +YGG P Q L
Sbjct: 70 ---------NRSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKSL 120
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K G+ VVIGTPGR DHI R + + ++K +LDEADEML MGF ED+E+IL K+ +
Sbjct: 121 KSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSKIPEER- 179
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT FSAT+P + ++ ++ K D + I +V E +N + + SS + +V+
Sbjct: 180 -QTTFFSATMPRGILELTKRYQK-DPEHIKVVRKEL--TVSNTKQYYIETRSSNKLEVLC 235
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKF 410
++ Y +++F TK A +L L A ALHGD++Q+QR++ + FR+G
Sbjct: 236 RLVDVYDPK-LSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTI 294
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
LVAT+VAARG+D++DV+ + + P+D E Y+HR GRTGRAG E
Sbjct: 295 DILVATDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGRE 340
>gi|374320874|ref|YP_005074003.1| ATP-dependent RNA helicase [Paenibacillus terrae HPL-003]
gi|357199883|gb|AET57780.1| ATP-dependent RNA helicase [Paenibacillus terrae HPL-003]
Length = 541
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 133/346 (38%), Positives = 205/346 (59%), Gaps = 36/346 (10%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ LK +GI + P+Q + ++++G D++ A TG GKTLAF+LPIL+ +
Sbjct: 15 DALKEQGITAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQKMNLDK------ 68
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLKKGIDV 240
R P LV+ PTRELA Q+ ++ ++ L+ +YGG Q KLK G +
Sbjct: 69 ----RHPQALVIAPTRELALQITQEANILAATEPSLSLLAVYGGQDVERQLRKLKGGAQL 124
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
+IGTPGR+ DH+ RG +DLS +K VLDEAD+ML MGF+ DVE IL +V + QT+LF
Sbjct: 125 IIGTPGRLLDHLRRGTLDLSGVKMLVLDEADQMLHMGFLNDVETILQEV--PYRRQTMLF 182
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV-----RHIVLPCSSSARSQVIPD 355
SAT+P+ ++ ++ ++ + +D+ K+K++++V R +V+ + + Q + D
Sbjct: 183 SATMPAGIRKLARVYM---NEPVDV----KVKSASSVPVSQIRQVVVQTTDRGKQQALVD 235
Query: 356 II---RCYSSGGRTIIFTETKESAS----QLADLLPGARALHGDIQQSQREVTLAGFRSG 408
++ R Y + +IF TK A+ QL ++ + LHGD+ Q++RE + FR
Sbjct: 236 MLNADRPYLA----VIFCRTKRRAAALNEQLQEMGFESGELHGDLSQNKREQVMKAFREA 291
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
K LVAT+VAARGLD+ V + + P+D E+YIHR GRTGRAG
Sbjct: 292 KLQLLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAG 337
>gi|440801541|gb|ELR22559.1| ATPdependent RNA helicase dbp2, putative [Acanthamoeba castellanii
str. Neff]
Length = 706
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 135/339 (39%), Positives = 193/339 (56%), Gaps = 12/339 (3%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + ++S E IQA + L G D+VG A TG GKTLAF LP + + P
Sbjct: 212 IMQTVRSLKFERPTAIQAQGWPCALSGRDMVGLAETGSGKTLAFTLPAIVHINAQPFLQP 271
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
G P VL+L PTRELA Q+ E + +G + + C+YGG P Q L +G++
Sbjct: 272 -----GDGPIVLILAPTRELAVQIQEVANTFGLTSKIKNTCVYGGVPKGPQIRDLSRGVE 326
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+VI TPGR+ D +E G +L + + VLDEAD ML MGF + I+ ++ QTL+
Sbjct: 327 IVIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIMEQIRPDR--QTLM 384
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
+SAT P VK ++++FL D I+ +G+ ++ A+ V IV + + ++
Sbjct: 385 WSATWPKEVKALASEFLSQDMIQIN-IGSMELAANHRVTQIVDIVQEYEKRPKLMKLLET 443
Query: 360 YSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
GGR +IFT+TK+ A QL L G A A+HGD Q +R+ TLA FRSG+ +VA
Sbjct: 444 IMDGGRILIFTQTKKGADQLQRALRGEGWPALAIHGDKTQQERDATLAEFRSGRSPIMVA 503
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
T+VAARGLD+ DV+ +I + E Y+HR GRTGRAG
Sbjct: 504 TDVAARGLDVKDVRYVINYDFASTAEDYVHRIGRTGRAG 542
>gi|88856781|ref|ZP_01131435.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
gi|88813949|gb|EAR23817.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
Length = 499
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 199/349 (57%), Gaps = 21/349 (6%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S I + + L +KGI FPIQ T M L G D++G+A+TG GKTL F LP+L+SL
Sbjct: 4 SELNIDQDMVDALATKGILEPFPIQTQTIPMGLAGQDIIGQAKTGTGKTLGFGLPVLQSL 63
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
P K L+++PTREL QV ED + +YGG Y Q
Sbjct: 64 GINPEPGVK---------ALIVVPTRELCVQVAEDLVLAASNRSTKIAAIYGGKAYEGQV 114
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
++K G V++GTPGR+ D + + L +K VLDEAD+ML +GF+ D+E + +
Sbjct: 115 EQIKDGAQVIVGTPGRLLDLASQRMLSLKDIKVMVLDEADKMLDLGFLADIEKLFAQTPP 174
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSAR 349
T+LFSAT+P + ++ +F+ K I + + + T N++H+V + +
Sbjct: 175 TR--HTMLFSATMPGPIVALARRFMN---KPIHIRATDPDEGLTQKNIKHVVYRAHNLDK 229
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+VI I++ G +T++FT TK +A++L + L A A+HGD+ Q QRE +A F
Sbjct: 230 DEVIARILQSEGRG-KTVVFTRTKRAAAKLVEELNDRGFNAAAVHGDLNQEQRERAMAAF 288
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
++GK L+AT+VAARG+D+NDV +I P D + Y+HR+GRTGRAG
Sbjct: 289 KAGKKDILIATDVAARGIDVNDVTHVINHTIPDDHDTYLHRAGRTGRAG 337
>gi|429195540|ref|ZP_19187565.1| ATP-dependent RNA helicase DeaD family protein [Streptomyces
ipomoeae 91-03]
gi|428668727|gb|EKX67725.1| ATP-dependent RNA helicase DeaD family protein [Streptomyces
ipomoeae 91-03]
Length = 916
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 135/343 (39%), Positives = 195/343 (56%), Gaps = 16/343 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI + FPIQ MT + L G+D++G+A+TG GKTL F LP+LE +T A +
Sbjct: 45 EALEAVGIINPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVT---VPADVE 101
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G + AP LV++PTREL QV D G + +YGG Y Q LK
Sbjct: 102 AGRAKPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVEALK 161
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DVVIGTPGR+ D + +DL +K VLDEADEML +GF+ DVE I+G + +
Sbjct: 162 KGVDVVIGTPGRLLDLAGQKKLDLKHVKCLVLDEADEMLDLGFLPDVEKIIGML--PARR 219
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ +++ N + + + +++
Sbjct: 220 QTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTSQHIYRAHNMDKPEMVAR 279
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
I++ G ++F TK +A+ LAD L + A+HGD+ Q RE L FR+GK
Sbjct: 280 ILQA-DGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVD 338
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LV T+VAARG+D+ V +I + P D + Y+HR GRTGRAG
Sbjct: 339 VLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAG 381
>gi|358446581|ref|ZP_09157126.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
gi|356607542|emb|CCE55468.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
Length = 675
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 132/361 (36%), Positives = 207/361 (57%), Gaps = 21/361 (5%)
Query: 99 EQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
E + +++P + + +++ + G + PIQ+ T ++++G D+VG A+TG G
Sbjct: 50 EDKNSANDNPQGFANLGLPDNVQDAVAKVGYTTPSPIQSETIPILMEGRDVVGLAQTGTG 109
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LT 217
KT AF LP+L S+ R P LVL PTRELA QV + F + +G +
Sbjct: 110 KTAAFALPVL----------SQIDINARHPQALVLAPTRELALQVADSFQSFADHLGRIE 159
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+YGG Y Q L++G +++GTPGR+ DH+E+G++D+S L+F VLDEADEML MG
Sbjct: 160 VLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMG 219
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F EDVE IL + +V LFSAT+P+ ++ +S ++L + ++ + + + N+
Sbjct: 220 FQEDVERILADTPEEKQVA--LFSATMPNGIRRLSKQYLNN---PAEVTVKSQQRTNDNI 274
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFT----ETKESASQLADLLPGARALHGDI 393
+ L + A+ I+ I+F ET+E A +L D A A++GDI
Sbjct: 275 KQRFLLTAHRAKLDAFTRILEVTDYDA-MIVFCRTKHETEEVAEKLRDAGYNAAAINGDI 333
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q+QRE T+ + G+ LVAT+VAARGLD++ + ++ + P D E+Y+HR GRTGRA
Sbjct: 334 AQNQRERTVDQLKDGRLDILVATDVAARGLDVDRITHVVNFDIPNDTESYVHRIGRTGRA 393
Query: 454 G 454
G
Sbjct: 394 G 394
>gi|407984605|ref|ZP_11165216.1| DEAD/DEAH box helicase family protein [Mycobacterium hassiacum DSM
44199]
gi|407373827|gb|EKF22832.1| DEAD/DEAH box helicase family protein [Mycobacterium hassiacum DSM
44199]
Length = 560
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 193/332 (58%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ IQA T ++ GSD+VG A+TG GKT AF +PIL SK R
Sbjct: 32 GYETPSAIQAATIPPLMAGSDVVGLAQTGTGKTAAFAIPIL----------SKIDTASRT 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
LVL PTRELA QV E F YG + + +YGGA Y Q L++G +V+GTPG
Sbjct: 82 TQALVLAPTRELALQVAEAFGRYGAHLPEVNVLPVYGGASYTPQLAGLRRGAHIVVGTPG 141
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ERG++DLS + + VLDEADEML+MGF EDVE IL + + +V LFSAT+P
Sbjct: 142 RVIDHLERGSLDLSRIDYLVLDEADEMLQMGFAEDVERILAETPEYKQVA--LFSATMPP 199
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ K+L +++ K + N+ + + + + ++
Sbjct: 200 AIRKITRKYLHD---PVEVTVKAKTATAENISQRYIEVAGPRKLDALTRVLEVEPFEA-M 255
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK++ +LA+ L A A++GDI Q+QRE T+A +SG L+AT+VAARG
Sbjct: 256 IVFVRTKQATEELAERLRARGFAAAAINGDIAQAQRERTIAALKSGAIDILIATDVAARG 315
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 316 LDVERISHVLNYDIPNDTESYVHRIGRTGRAG 347
>gi|238755161|ref|ZP_04616507.1| DEAD/DEAH box helicase domain protein [Yersinia ruckeri ATCC 29473]
gi|238706608|gb|EEP98979.1| DEAD/DEAH box helicase domain protein [Yersinia ruckeri ATCC 29473]
Length = 656
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 142/363 (39%), Positives = 200/363 (55%), Gaps = 58/363 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQ +L+G D++G A+TG GKT AF LP+L ++ P
Sbjct: 14 LSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNID--P 71
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
T +AP VLVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 72 TL--------KAPQVLVLAPTRELAVQVAEALSSFSKHISGVNVVALYGGQRYDVQLRAL 123
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G VV+GTPGR+ DH++RG ++LS+L VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEH- 182
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 183 -QTALFSATMPEAIRRITRRFMKDPQEV-------RIQSSNTTR---------------P 219
Query: 355 DIIRCYSSGG-------------------RTIIFTETKESASQLADLLP----GARALHG 391
DI + Y G IIF TK + ++A+ L + AL+G
Sbjct: 220 DISQSYWKVGGGYRKNEALVRFLESEDFDAAIIFVRTKNATLEVAETLERSGYSSAALNG 279
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
D+ QS RE TL R G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTG
Sbjct: 280 DMNQSLREQTLERLRDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTG 339
Query: 452 RAG 454
RAG
Sbjct: 340 RAG 342
>gi|429728801|ref|ZP_19263505.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
gi|429147776|gb|EKX90798.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
Length = 547
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 195/332 (58%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E PIQA +VL+G D++G+A+TG GKT AF +P+LE + P+ +
Sbjct: 23 GYEQPSPIQAKAIPVVLEGYDVIGQAQTGTGKTAAFSIPLLEKI--DPS--------DKR 72
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
+VL PTRELA QV E+ + G+ + +YGG P Q LK G+ V+IGTPG
Sbjct: 73 LQAIVLCPTRELAIQVSEEVRKLAKYLHGVKTLPIYGGQPIDRQIKALKGGVQVIIGTPG 132
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DHI R + S++K V+DEADEML MGF ED+E IL + QT LFSAT+P
Sbjct: 133 RVIDHINRKTLKPSTVKMVVMDEADEMLDMGFREDIETILSST--PQERQTSLFSATMPK 190
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ ++ K+ K+ + + K N++ + S + +V+ +I Y+ T
Sbjct: 191 AILELTQKY---QKEPVHIKVVRKELTVNNIKQFYIETRKSNKLEVLTRLIDVYNPK-LT 246
Query: 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
++FT TK+ A +L L GA +LHGD++Q QR++ + FR G LVAT+VAARG
Sbjct: 247 VVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHGTIDILVATDVAARG 306
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+D++DV+ +I E P+D E Y+HR GRTGRAG
Sbjct: 307 IDVDDVECVINYELPQDEEYYVHRIGRTGRAG 338
>gi|348030292|ref|YP_004872978.1| ATP-dependent RNA helicase [Glaciecola nitratireducens FR1064]
gi|347947635|gb|AEP30985.1| ATP-dependent RNA helicase [Glaciecola nitratireducens FR1064]
Length = 584
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 141/340 (41%), Positives = 197/340 (57%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + L+ G E PIQA + ++L G DL+G+A+TG GKT AF LP+L ++ P +
Sbjct: 18 LLQALEKVGYEKPSPIQAKSIPLLLAGHDLLGQAQTGTGKTAAFALPMLANI--DPDENF 75
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGI 238
+ +LVL PTRELA QV E F VY + + +YGG Y Q +LK+G+
Sbjct: 76 TQ--------LLVLAPTRELAIQVAEAFQVYASFSKKIRVLPVYGGQSYDNQIRQLKRGV 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGRI DHI+R + L LKF VLDEADEMLRMGF++DVELIL + QT
Sbjct: 128 QVVVGTPGRIIDHIKRKTLKLDKLKFLVLDEADEMLRMGFIDDVELILSHA--PAERQTA 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P +K I+ ++LK+ + + + +++ +R + + + + I+
Sbjct: 186 LFSATMPDAIKKITKRYLKNPEH---VKIESTVSSASMIRQRYCQVAGHHKLEALTRIME 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G IIF TK + +LAD L L+GDI Q+ RE T+ + G LV
Sbjct: 243 VEEFDG-MIIFVRTKTATVELADKLTARGHVVEPLNGDIPQNSRERTVEKLKRGDIDILV 301
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG
Sbjct: 302 ATDVVARGLDVERVSHVINYDIPYDTESYVHRIGRTGRAG 341
>gi|296121514|ref|YP_003629292.1| DEAD/DEAH box helicase [Planctomyces limnophilus DSM 3776]
gi|296013854|gb|ADG67093.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
3776]
Length = 608
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 136/344 (39%), Positives = 198/344 (57%), Gaps = 21/344 (6%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS P+ + + G + PIQA T ++++G D++G A+TG GKT AF +P+L+++
Sbjct: 19 ISPPILSAVTASGYVNPTPIQARTIPLLIEGRDVLGMAQTGTGKTAAFAIPMLQAIDLSS 78
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
+ A VL+L PTRELA QV E F+ Y + GL +YGG Y Q +L
Sbjct: 79 S----------ATQVLILAPTRELAMQVAEAFEKYAANLKGLRVAAIYGGQDYQLQFRQL 128
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+G V++GTPGR+ DHI RG++ L SLK VLDEADEMLRMGF EDVE IL + ++
Sbjct: 129 NRGAHVIVGTPGRVMDHIRRGSLKLDSLKGLVLDEADEMLRMGFAEDVEWILEQT--PSQ 186
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P ++ I+ K LK+ ++ + + +R + + V+
Sbjct: 187 RQIALFSATMPDSIRRIAQKHLKNPA---EITIKRRTATAETIRQRFITVPPFQKEAVLA 243
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKF 410
I+ IIF +TK + LA+ L G R AL D+ Q+QRE + +SG+
Sbjct: 244 RILETEPIDA-VIIFVKTKSTTVPLAEFLASQGYRTAALSSDVPQAQRERIVEHLKSGRL 302
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
++AT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG
Sbjct: 303 DIVIATDVAARGLDVQRITHVINFDLPSDSESYVHRIGRTGRAG 346
>gi|293334655|ref|NP_001168054.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
gi|223945725|gb|ACN26946.1| unknown [Zea mays]
gi|414876118|tpg|DAA53249.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 672
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 132/342 (38%), Positives = 204/342 (59%), Gaps = 19/342 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP---ILESLTNGPT 176
LRE L++ G + PIQA ++ + + G D+V A+TG GKTL ++LP +L+ L +
Sbjct: 169 LREVLQA-GFSAPTPIQAQSWPIAMKGRDIVAVAKTGSGKTLGYLLPGFILLKRLHHNSR 227
Query: 177 KASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
+ P+VLVL PTRELA Q+ ++ +G + ++S CLYGGAP Q +L++
Sbjct: 228 EG---------PTVLVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLRELER 278
Query: 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQ 296
G DVV+ TPGR+ D +E + L + + VLDEAD ML MGF + I+ ++ + Q
Sbjct: 279 GADVVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPP--RRQ 336
Query: 297 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDI 356
TL+++AT P V+ I++ L + + +++ +++ A+ ++ V +S+ + I
Sbjct: 337 TLMYTATWPKEVRKIASDLLNNPVQ-VNIGNTDQLVANKSITQHVEVIPHMEKSRRLDQI 395
Query: 357 IRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+R G + IIF TK QLA L GA A+HGD Q++R+ L FRSG+ L
Sbjct: 396 LRSQDPGSKIIIFCSTKRMCDQLARNLSRQYGASAIHGDKSQAERDSVLNDFRSGRCPVL 455
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455
VAT+VAARGLDI D+++++ + P VE Y+HR GRTGRAG
Sbjct: 456 VATDVAARGLDIKDIRIVVNYDFPTGVEDYVHRIGRTGRAGA 497
>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase [Sphaerobacter thermophilus DSM 20745]
gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 526
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 198/366 (54%), Gaps = 45/366 (12%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ + + + G E PIQ ++L G DL+ +A+TG GKT AF LPI+E L
Sbjct: 9 LSEPVLKAIDAVGFEEPTPIQREAIPLLLSGRDLIAQAQTGTGKTAAFALPIIERLQPN- 67
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
GR P LVL PTRELA QV + F G +YGG P Q L+
Sbjct: 68 ---------GRRPQALVLAPTRELAVQVAQTFHQLGRVRDTRVLAVYGGQPIERQLRALR 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
++VV+GTPGR+ DHI R +DLS++ V+DEADEML MGF+EDVE IL V +
Sbjct: 119 HPVEVVVGTPGRVMDHIRRETLDLSNVSTVVIDEADEMLDMGFIEDVEWILDHV--PAER 176
Query: 296 QTLLFSATLPSWVKHISTKFLKS----------------DKKTIDLVGNEKMKASTNVRH 339
QT LFSAT+P V ++ ++L+ ++ +++V K++A T +
Sbjct: 177 QTALFSATIPDRVAALARRYLRDPARVAVEPERVTVPQIEQTYVEVVQRAKVEALTRILD 236
Query: 340 IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQRE 399
+ P S+ II C + G E QL L A ALHGD+ Q QR+
Sbjct: 237 METPPSA---------IIFCRTKRG-------VDELTQQLQSLGYAAEALHGDLSQVQRD 280
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAE 459
+A FRSG+ L+AT+VAARGLD+ + +I + P D E+Y+HR GRTGRAG A
Sbjct: 281 RVMARFRSGQAELLIATDVAARGLDVEGITHVINYDIPGDPESYVHRIGRTGRAG-RAGA 339
Query: 460 TITQVS 465
IT V+
Sbjct: 340 AITLVT 345
>gi|218295270|ref|ZP_03496106.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
gi|218244473|gb|EED10998.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
Length = 513
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 146/333 (43%), Positives = 200/333 (60%), Gaps = 22/333 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
++E L +GI + PIQA + L+G DL+G+ARTG GKTLAF LPI + L +AS
Sbjct: 12 IKEALYGRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAQRL-----EAS 66
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
++ G R P LVL PTRELA QV + V A L +YGG Y Q+ +L+KG D
Sbjct: 67 RQRG--RKPRALVLTPTRELALQVASE--VAALAPHLKVVPVYGGTGYGKQKEELQKGAD 122
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VV+ TPGR D++ +G +DLS ++ VLDEADEML MGF E+VE IL + QTLL
Sbjct: 123 VVVATPGRALDYLRQGVLDLSEVEIAVLDEADEMLSMGFEEEVEAILAATPPSR--QTLL 180
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSATLP+W + ++ +++KS I++V E + I+ P R ++ D++
Sbjct: 181 FSATLPTWARRLAERYMKSPV-VINVVKEEGVTYQEEA--ILAPTD---RLALLSDLLYV 234
Query: 360 YSSGGRTIIFT----ETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+ R I+FT ET+E A+ L L ARA+HGD+ Q+ RE + FR G+ LVA
Sbjct: 235 -KAPKRAIVFTKTKAETEEVATGLLRLGHAARAIHGDLSQADRERVMRAFREGEVRVLVA 293
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSG 448
T+VAARGLDI +V L++ P E Y HRSG
Sbjct: 294 TDVAARGLDIPEVDLVVHYRLPDKPETYQHRSG 326
>gi|42573778|ref|NP_974985.1| DEAD-box ATP-dependent RNA helicase 30 [Arabidopsis thaliana]
gi|108861888|sp|Q8W4R3.2|RH30_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 30
gi|110741550|dbj|BAE98724.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
gi|332010323|gb|AED97706.1| DEAD-box ATP-dependent RNA helicase 30 [Arabidopsis thaliana]
Length = 591
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 131/340 (38%), Positives = 198/340 (58%), Gaps = 15/340 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E + G PIQA + M L G DL+G A TG GKTLA++LP L ++ P +
Sbjct: 178 EAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQP-----R 232
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
G P VL+L PTRELA Q+ E+ +G G+ S C+YGGAP Q L++G+++V
Sbjct: 233 LGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIV 292
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
I TPGR+ D +E + +L + + VLDEAD ML MGF + I+ ++ QTLL+S
Sbjct: 293 IATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR--QTLLWS 350
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT P V+ ++ +FL+ K I +G+ +KA+ ++ ++ + + + +++
Sbjct: 351 ATWPREVETLARQFLRDPYKAI--IGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLM 408
Query: 362 SGGRTIIFTETKESASQLA-----DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G + +IF ETK Q+ D P A A+HGD QS+R+ LA F+SG+ + AT
Sbjct: 409 DGSKILIFVETKRGCDQVTRQLRMDGWP-ALAIHGDKTQSERDRVLAEFKSGRSPIMTAT 467
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
+VAARGLD+ D++ ++ + P +E YIHR GRTGRAG +
Sbjct: 468 DVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAK 507
>gi|269796056|ref|YP_003315511.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
gi|269098241|gb|ACZ22677.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
Length = 593
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 131/350 (37%), Positives = 206/350 (58%), Gaps = 17/350 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + + L GI + FPIQAMT + + G D++G+A+TG GKTL F +P+L +
Sbjct: 19 FGVRPEIVQALADAGIVAPFPIQAMTLPVAMAGHDIIGQAKTGTGKTLGFGVPLLHRVV- 77
Query: 174 GPTKASKKTGYGRAPS-----VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
A + GY P+ LV++PTRELA QV +D + + LYGG Y
Sbjct: 78 ----APGEPGYDELPAPGKPQALVIVPTRELAVQVAKDLEAASTKRSVRIVQLYGGRAYE 133
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L++G++VV+GTPGR+ D +++G +DL+ + VLDEADEML +GF+ DVE +L +
Sbjct: 134 PQVKALEQGVEVVVGTPGRMIDLLKQGFLDLTRAQCVVLDEADEMLDLGFLPDVEKLLAR 193
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
T+LFSAT+P V ++ +++K ++ + N++ +V +
Sbjct: 194 TPAVR--HTMLFSATMPGAVVAMARRYMKQPTHIRANDPDDGGQTVKNIKQVVYRAHALD 251
Query: 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAG 404
+ +V+ I++ G +I+F TK +A+++AD L + A+HGD+ Q RE L
Sbjct: 252 KVEVLARILQSEGR-GLSIVFARTKRTAAKVADELADRGFASGAIHGDLGQGAREQALRA 310
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
FRSGK LVAT+VAARG+D+++V ++ + P D + Y+HR+GRTGRAG
Sbjct: 311 FRSGKIDVLVATDVAARGIDVDEVTHVVNYQCPEDEKTYLHRTGRTGRAG 360
>gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
Length = 545
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 135/340 (39%), Positives = 197/340 (57%), Gaps = 14/340 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-NGPTKA 178
L + + G PIQ +V+ G D++G A+TG GKT F LP+L + + T
Sbjct: 12 LLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLLHRIARHANTST 71
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
S RA L+L PTRELA QV E Y + L S C+YGG Q+ +L++GI
Sbjct: 72 SPARHQTRA---LILAPTRELAMQVFESVKTYSKHLPLRSVCVYGGVDIRPQQAELRRGI 128
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
++VI TPGR+ DH+E+ +I+LS ++ VLDEAD ML MGF+ D++ IL + + Q+L
Sbjct: 129 EIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALL--PKQRQSL 186
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT +K ++ + LK + + I++ + S + H+V P SS + ++ ++R
Sbjct: 187 LFSATFSDEIKRLADQMLK-EPQLIEVA--RRNMVSETITHVVHPVSSGMKRNLLAHLLR 243
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ + ++F +TK +LA L A A+HGD Q QR TL F+SGK LV
Sbjct: 244 -HKPDTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGKLRVLV 302
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLDI+++ +I E P E Y+HR GRTGRAG
Sbjct: 303 ATDVAARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAG 342
>gi|163751207|ref|ZP_02158436.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
gi|161329036|gb|EDQ00109.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
Length = 611
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 157/449 (34%), Positives = 233/449 (51%), Gaps = 53/449 (11%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S PL L G E PIQA + ++ G D++G+A+TG GKT AF LP+L ++
Sbjct: 13 LSEPLLRSLDELGYEKPTPIQAASIIPLMAGKDILGQAQTGTGKTGAFALPLLSNIDPAI 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
AP +LVL PTRELA QV E F Y V GL +YGG H Q L
Sbjct: 73 N----------APQILVLAPTRELAVQVAEAFATYAKFVKGLHVLPIYGGQSMHQQLNAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G V++GTPGR+ DH+ RG + L SLK VLDEADEML+MGF++D+E IL +
Sbjct: 123 RRGPQVIVGTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHT--PKQ 180
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P +K ++ K+L +D + + +T R + + S + + +
Sbjct: 181 RQLALFSATMPEQIKRVANKYL-TDPIHVKIAATTATVETTEQRFVQV--SQHNKLEALV 237
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
++ + G IIF T+ S +LA+ L + LHGD+ Q RE + + G
Sbjct: 238 RVLEVEKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGSL 296
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG---------------- 454
L+AT+VAARGLD+ ++ +I + P D EAYIHR GRTGRAG
Sbjct: 297 DILIATDVAARGLDVERIRHVINYDIPYDTEAYIHRIGRTGRAGRTGMAILFVTHREMRM 356
Query: 455 ---VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAK--------ALAKAVGYTE 503
+E A T +++S +P+ +S E L+ G AE++ K A+A+ E
Sbjct: 357 LRTIERA-TKSRISPMDVPSPESVTERRLSRLGEQVAEIINKDSLDFMKGAVAQLCQQLE 415
Query: 504 IKSRSLLSSLEDHVTVVLEAGKPIYTPSF 532
+ + L ++L V + +P+ P+
Sbjct: 416 VDTDVLAAALLQQV----QKDRPLQLPAM 440
>gi|422020989|ref|ZP_16367503.1| ATP-dependent RNA helicase DeaD [Providencia sneebia DSM 19967]
gi|414099894|gb|EKT61527.1| ATP-dependent RNA helicase DeaD [Providencia sneebia DSM 19967]
Length = 637
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 205/364 (56%), Gaps = 61/364 (16%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S + L+ G E PIQ ++++G+D++G A+TG GKT AF LP+L ++ P
Sbjct: 19 LSASILTALQDLGYEKPSPIQKQCIPLLMEGNDVLGMAQTGSGKTAAFSLPLLHNI--DP 76
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+AP +LVL PTRELA QV E DF + V + LYGG Y Q
Sbjct: 77 DL--------KAPQILVLAPTRELAVQVAEAMSDFSKHMSRVNV--VALYGGQRYDVQLR 126
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF+EDVE I+ ++
Sbjct: 127 ALRQGPQVVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAQ 186
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K K+ +++AS R
Sbjct: 187 H--QTALFSATMPEPIRRITRRFMKDPKEI-------RIQASITTR-------------- 223
Query: 353 IPDIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y + G R IIF TK + ++A+ L + AL+
Sbjct: 224 -PDIAQSYWTVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN 282
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ Q+ RE TL + G+ L+AT+VAARGLD++ + L++ + P D E+Y+HR GRT
Sbjct: 283 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRT 342
Query: 451 GRAG 454
GRAG
Sbjct: 343 GRAG 346
>gi|193212281|ref|YP_001998234.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum
parvum NCIB 8327]
gi|193085758|gb|ACF11034.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB
8327]
Length = 647
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 143/370 (38%), Positives = 205/370 (55%), Gaps = 22/370 (5%)
Query: 101 ERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
E+ + E +++ PL + L++ G E+ PIQA T ++L+G D++G+A+TG GKT
Sbjct: 9 EQEQQEQSLNFRSLQLAEPLLQALEAVGYETPTPIQANTIPLLLEGRDVLGQAQTGTGKT 68
Query: 161 LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSC 219
AF LP L ++ + P VLVL PTRELA QV E F Y +
Sbjct: 69 AAFALPTLSNIDLSLSD----------PQVLVLAPTRELAIQVAEAFHTYAEFMPDFHVL 118
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
+YGG Y Q LK+G+ VV+GTPGR+ DH+ +G ++L LK VLDEADEMLRMGF+
Sbjct: 119 PIYGGQDYGVQIRMLKRGVHVVVGTPGRVMDHMRKGTLNLDGLKCLVLDEADEMLRMGFI 178
Query: 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339
+DVE IL + ++ +V LFSAT+P + I+ K+LK+ ++ K +R
Sbjct: 179 DDVEWILDQTPESRQVA--LFSATMPQPILRIARKYLKA---PAEITIQAKTTTVETIRQ 233
Query: 340 IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQ 395
+ + I+ G IIF TK LA+ L A AL+GD+ Q
Sbjct: 234 RYWMVGGHHKLDALTRILEVEPFDG-IIIFVRTKTETVNLAEKLQARGYLAAALNGDMVQ 292
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455
S RE T+ + G ++AT+VAARGLD++ + +I + P D E+Y+HR GRTGRAG
Sbjct: 293 SARERTIEQLKDGTLNIVIATDVAARGLDVDRISHVINYDIPTDTESYVHRIGRTGRAG- 351
Query: 456 EAAETITQVS 465
+ E I VS
Sbjct: 352 RSGEAILFVS 361
>gi|384227801|ref|YP_005619546.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
gi|345538741|gb|AEO08718.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 600
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 196/328 (59%), Gaps = 26/328 (7%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA ++L+G D++G A+TG GKT AF LP+L +L +AP +LVL
Sbjct: 31 PIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINL----------KAPQILVL 80
Query: 194 LPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
PTRELA QV E F D +G+ LYGG Y Q L++G +V+GTPGR+ DH+
Sbjct: 81 APTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALRQGPQIVVGTPGRLLDHL 140
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
+RG ++LS+L VLDEADEMLRMGF+EDVE I+ ++ + QT LFSAT+P ++ IS
Sbjct: 141 KRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEH--QTALFSATMPEAIRRIS 198
Query: 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY--SSGGRTIIFT 370
+F+K+ ++ K++++ R + + +IR TIIF
Sbjct: 199 KRFMKNPQEI-------KIQSNITTRPDIKQSYWMVYGRKTDALIRFLEVEDFSATIIFV 251
Query: 371 ETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
TK + ++++ L + AL+GD+ Q+ RE TL ++G+ L+AT+VAARGLD++
Sbjct: 252 RTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIATDVAARGLDVD 311
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ +I + P D E+Y+HR GRTGRAG
Sbjct: 312 RISFVINYDIPMDSESYVHRIGRTGRAG 339
>gi|241766307|ref|ZP_04764197.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241363561|gb|EER58995.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 448
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 137/336 (40%), Positives = 199/336 (59%), Gaps = 14/336 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
++ G E+ PIQA VL+G DL+ A+TG GKT AF LP+L L+ G +K G
Sbjct: 16 VQETGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPMLHRLSQGTAPKNKFGG 75
Query: 184 YG-RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
G RA LVL PTRELA QV E YG + + S ++GG + Q ++K+G+D+++
Sbjct: 76 KGIRA---LVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNPQIDRIKRGVDILV 132
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
TPGR+ D ++G +DLS+++ VLDEAD ML MGF+ DV+ +L V Q+LLFSA
Sbjct: 133 ATPGRLLDLQQQGFLDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVPKDK--QSLLFSA 190
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T ++ ++ LK+ + N ++ T V H P + QV+ II+ + +
Sbjct: 191 TFSDEIRELANTLLKNPQSIQVTPSNTTVQRITQVIH---PVGRGKKKQVLLHIIQQH-N 246
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
+ ++FT TK A+ +A+ L A ALHG+ QS R LAGF+SG+ LVAT++
Sbjct: 247 WSQVLVFTRTKFGANNVAEFLTKNGVQAMALHGNKSQSARTQALAGFKSGEIRALVATDI 306
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AARG+DI+D+ ++ E P E Y+HR GRTGRAG
Sbjct: 307 AARGIDIDDLPHVVNYEIPNVSEDYVHRIGRTGRAG 342
>gi|323359563|ref|YP_004225959.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
gi|323275934|dbj|BAJ76079.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
Length = 482
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 137/341 (40%), Positives = 197/341 (57%), Gaps = 25/341 (7%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ L SKGI FPIQ T + L G D++G+A+TG GKT F +P+++ L P K
Sbjct: 15 DALASKGIVDAFPIQEQTIPLGLPGQDIIGQAKTGTGKTFGFGIPVVQRLGLNPEPGVK- 73
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
L+++PTRELA QV+ED D+ + +YGG Y Q +LK G +V
Sbjct: 74 --------ALIVVPTRELAVQVYEDMDMLTSNRPTSVVAIYGGKAYEGQIDQLKAGAQIV 125
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR+ D + +DLS+ VLDEAD+ML +GF+ D+E I KV Q LFS
Sbjct: 126 VGTPGRLIDLANQRLLDLSNATEVVLDEADKMLDLGFLADIEKIFSKVPPVRHTQ--LFS 183
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSARSQVIPDIIRC 359
AT+P + ++ +F+ + I + N+ + T N++H+V S + +V I R
Sbjct: 184 ATMPGPIVALARRFMSN---PIHMRANDPDEGLTQANIKHLVYRAHSLDKDEV---IARI 237
Query: 360 YSSGGR--TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
S GR +IFT TK +A +L D L A A+HGD+ Q RE ++A F++GK L
Sbjct: 238 LQSEGREKAVIFTRTKRAAQKLVDELGDRGFNAAAVHGDMSQEARERSMAAFKAGKKDVL 297
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+AT+VAARG+D+NDV +I P D + Y+HR+GRTGRAG
Sbjct: 298 IATDVAARGIDVNDVTHVINHTIPDDEKTYLHRAGRTGRAG 338
>gi|143361556|sp|Q5QMN3.2|RH20_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 20
Length = 494
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 139/356 (39%), Positives = 205/356 (57%), Gaps = 20/356 (5%)
Query: 108 PNAVSRFR-ISVP---LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P V FR + P L+E K+ +E PIQ+ + M L G DL+G A TG GKTLA+
Sbjct: 87 PKPVREFRDVGFPEYVLQEITKAGFVEPT-PIQSQGWPMALRGRDLIGIAETGSGKTLAY 145
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+LP + + P A G P VLVL PTRELA Q+ ++ +G + + S C+YG
Sbjct: 146 LLPAIVHVNAQPILAP-----GDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYG 200
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G P Q L+KG+++VI TPGR+ D IE + +L + + VLDEAD ML MGF ++
Sbjct: 201 GVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIK 260
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
I+ ++ QTL +SAT P V+ ++ FL K I +G+E++KA+ + V
Sbjct: 261 KIVSQIRPDR--QTLYWSATWPKEVEQLARNFLFDPYKVI--IGSEELKANHAISQHVEI 316
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-----DLLPGARALHGDIQQSQR 398
S S + + +++ G R +IF +TK+ Q+ D P A ++HGD Q++R
Sbjct: 317 LSESQKYNKLVNLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKSQAER 375
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ L+ F+SGK + AT+VAARGLD+ DV+ +I + P +E Y+HR GRTGRAG
Sbjct: 376 DWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 431
>gi|348170820|ref|ZP_08877714.1| putative ATP-dependent RNA helicase [Saccharopolyspora spinosa NRRL
18395]
Length = 495
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 142/360 (39%), Positives = 205/360 (56%), Gaps = 18/360 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ GIE F IQ +T + + G DL+G+ARTG GKTL F +P+L L ++ G
Sbjct: 9 LREAGIERTFAIQELTLPLAMQGEDLIGQARTGTGKTLGFGVPLLHRL--------QRPG 60
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P L+++PTREL QV D G +G+ + +YGG PY Q L+KG+DVVIG
Sbjct: 61 DG-TPQALIVVPTRELCLQVTRDLTDAGKHLGVRTVAVYGGRPYEEQISALRKGVDVVIG 119
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D E+ ++ L ++ VLDEADEML +GF+ D+E IL V + QT+LFSAT
Sbjct: 120 TPGRLLDLAEQRHLVLGKVRGLVLDEADEMLDLGFLPDIERILHMVPEQR--QTMLFSAT 177
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++ F+ + I ++ R + + ++++I ++ +
Sbjct: 178 MPGPILTLARTFM-TQPTHIRAEQADESAVHERTRQFIYRAHAMDKTELIAKALQA-TDR 235
Query: 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G +IF+ TK +A +LAD L A A+HGD+ Q RE L FRSGK LVAT+VA
Sbjct: 236 GLAMIFSRTKRTAQKLADELTERGFAAGAVHGDLGQGAREKALRAFRSGKVDILVATDVA 295
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEEL 479
ARG+D+ V +I + P D + Y+HR GRTGRAG E IT V P +K ++ L
Sbjct: 296 ARGIDVAGVTHVINLQCPDDEKNYVHRIGRTGRAGREGV-AITLVDWDEEPRWKLISDTL 354
>gi|317493632|ref|ZP_07952053.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918575|gb|EFV39913.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 636
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 158/435 (36%), Positives = 229/435 (52%), Gaps = 72/435 (16%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
++ P+ + L G E PIQA +L+G D++G A+TG GKT AF LP+L ++ P
Sbjct: 13 LAAPIIQALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNID--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ +AP VLVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 71 SL--------KAPQVLVLAPTRELAVQVSEAMADFAKHMNGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG ++LS+L VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAQH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSITTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTVFGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD++ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG--------VEAAE-----TITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAV 499
AG VE E I ++ IP + ELL L A+ AK +
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERIMKLTIPEVEIPNAELLGQRRL--AKFAAKVQQQLE 396
Query: 500 GYTEIKSRSLLSSLE 514
K R LL+ L+
Sbjct: 397 SSDLDKYRDLLTKLQ 411
>gi|90408322|ref|ZP_01216486.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
gi|90310553|gb|EAS38674.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
Length = 579
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 137/332 (41%), Positives = 191/332 (57%), Gaps = 21/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA +L+G D++G A+TG GKT AF LP+L ++ +A
Sbjct: 30 GYETPSPIQAQCIPHLLNGKDVLGLAQTGTGKTAAFALPLLANIDLSL----------KA 79
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P VLVL PTRELA QV E F Y + G +YGG Y+ Q +L++G VV+GTPG
Sbjct: 80 PQVLVLAPTRELAIQVAEAFQTYSRHLAGFHVMPIYGGQSYNIQFGQLRRGPQVVVGTPG 139
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
RI DH++R +DLS+L VLDEADEMLRMGF++DVE I+ + K QT LFSAT+P
Sbjct: 140 RIMDHLKRKTLDLSNLTTLVLDEADEMLRMGFIDDVETIMKDM--PAKHQTALFSATMPD 197
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+K I+ +++ I++ K N+ + + ++ G
Sbjct: 198 QIKRITKRYMND---PIEVKIKAKTSTVENIEQKCWIVRGVNKLDALTRMLETEEFDG-V 253
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK + +LA+ L + AL+GD+ Q RE T+A +SG LVAT+VAARG
Sbjct: 254 IIFARTKTATVELAERLEARGYRSAALNGDMNQQTRERTIARLKSGGLDILVATDVAARG 313
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 314 LDVERISLVVNYDIPTDTESYVHRIGRTGRAG 345
>gi|56478694|ref|YP_160283.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1]
gi|56314737|emb|CAI09382.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1]
Length = 658
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 141/348 (40%), Positives = 194/348 (55%), Gaps = 28/348 (8%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ PL + L G E+ PIQA+ +L G DL+G A+TG GKT AF LP+L+ L
Sbjct: 51 LRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALPLLDRLDLA- 109
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
+ P VLVL PTRELA QV E F Y + G +YGG Q +L
Sbjct: 110 ---------VKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQL 160
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+G V++GTPGR+ DHIER +++L SL VLDEADEMLRMGF++DVE IL +
Sbjct: 161 ARGAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHT--PAE 218
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST----NVRHIVLPCSSSARS 350
QT LFSAT+P ++ ++ ++L+ ++ K+KAST R S + +
Sbjct: 219 RQTALFSATMPDAIRRVAHRYLREPREV-------KIKASTTTVSTTRQRYCQISVAHKL 271
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFR 406
+ I+ IIF TK + +LAD L A AL+GD+ Q RE + +
Sbjct: 272 DALTRILEVEEDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLK 331
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
G+ +VAT+VAARGLD++ + +I + P D EAY+HR GRTGRAG
Sbjct: 332 GGQLDIVVATDVAARGLDVSRISHVINYDIPYDTEAYVHRIGRTGRAG 379
>gi|55980078|ref|YP_143375.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
gi|55771491|dbj|BAD69932.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
Length = 517
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 141/337 (41%), Positives = 192/337 (56%), Gaps = 21/337 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + E L +G+ + PIQA + L+G DL+G+ARTG GKTLAF LPI E L
Sbjct: 13 FPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAP 72
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+ GR P LVL PTRELA QV + A L +YGG Y Q+
Sbjct: 73 SQER-------GRKPRALVLTPTRELALQVASELTAV--APHLKVVAVYGGTGYGKQKEA 123
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L +G D V+ TPGR D++ +G +DLS ++ VLDEADEML MGF E+VE +L +
Sbjct: 124 LLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR 183
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QTLLFSATLPSW K ++ +++K + I+++ +E + +P R +V+
Sbjct: 184 --QTLLFSATLPSWAKRLAERYMK-NPVLINVIKDEPVTYEEEA----VPAPVRGRLEVL 236
Query: 354 PDIIRCYSSGGRTIIFT----ETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGK 409
D++ +S R ++FT ET+E A L L A+ALHGD+ Q +RE L FR G+
Sbjct: 237 SDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGE 295
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
LVAT+VAARGLDI V L++ P EAY HR
Sbjct: 296 VRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHR 332
>gi|268592819|ref|ZP_06127040.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri DSM 1131]
gi|291311604|gb|EFE52057.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri DSM 1131]
Length = 643
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 203/364 (55%), Gaps = 61/364 (16%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S + L G E PIQ +++DG+D++G A+TG GKT AF LP+L ++ P
Sbjct: 14 LSASILTALNDLGYEKPSPIQQQCIPLLMDGNDVLGMAQTGSGKTAAFSLPLLHNI--DP 71
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+AP +LVL PTRELA QV E DF + V + LYGG Y Q
Sbjct: 72 DL--------KAPQILVLAPTRELAVQVAEAMSDFSKHMNRVNV--VALYGGQRYDVQLR 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +V+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF+EDVE I+ ++
Sbjct: 122 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAE 181
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K K+ +++AS R
Sbjct: 182 H--QTALFSATMPEPIRRITRRFMKDPKEI-------RIQASITTR-------------- 218
Query: 353 IPDIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y + G R IIF TK + ++A+ L + AL+
Sbjct: 219 -PDIAQSYWTVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN 277
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRT
Sbjct: 278 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRT 337
Query: 451 GRAG 454
GRAG
Sbjct: 338 GRAG 341
>gi|259149685|emb|CAY86489.1| Ded1p [Saccharomyces cerevisiae EC1118]
Length = 604
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 199/349 (57%), Gaps = 21/349 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 153 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 212
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 213 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREI 272
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I VED +
Sbjct: 273 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 329
Query: 295 V-----QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 330 TPVGERQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 386
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGF 405
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 387 KSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 445
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAG
Sbjct: 446 RSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAG 494
>gi|304396354|ref|ZP_07378235.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
gi|440758704|ref|ZP_20937863.1| Cold-shock DEAD-box protein A [Pantoea agglomerans 299R]
gi|304355863|gb|EFM20229.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
gi|436427632|gb|ELP25310.1| Cold-shock DEAD-box protein A [Pantoea agglomerans 299R]
Length = 642
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 137/340 (40%), Positives = 199/340 (58%), Gaps = 26/340 (7%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L G PIQA +L G D++G A+TG GKT AF LP+L ++ PT
Sbjct: 19 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNID--PTV---- 72
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
+AP +LVL PTRELA QV E + + GL LYGG Y Q L++G V
Sbjct: 73 ----KAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQGPQV 128
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH++RG +DLS+L+ VLDEADEMLRMGF+EDVE I+ ++ + QT LF
Sbjct: 129 VVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPADH--QTALF 186
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ I+ +F+K ++ ++++S R + +A + ++R
Sbjct: 187 SATMPEAIRRITKRFMKDPQEV-------RIQSSLTTRPDISQSYWTAYGRKTDALVRFL 239
Query: 361 SSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G+ L+
Sbjct: 240 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 299
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 300 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAG 339
>gi|149907510|ref|ZP_01896257.1| Helicase [Moritella sp. PE36]
gi|149809180|gb|EDM69109.1| Helicase [Moritella sp. PE36]
Length = 615
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 195/341 (57%), Gaps = 20/341 (5%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + L G E+ PIQA ++ +G D++G A+TG GKT AF LP+L ++ TK
Sbjct: 18 PILQVLNDLGYEAPTPIQAECIPLLQNGGDVLGMAQTGTGKTAAFALPLLSNIDTALTK- 76
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
P +LVL PTRELA QV E F Y + G +YGG Y Q LK+
Sbjct: 77 ---------PQILVLAPTRELAIQVAEAFQTYSRHMRGFHVLPIYGGQSYPIQLKALKRN 127
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
V++GTPGR+ DHI RG +DLS +K VLDEADEMLRMGF++DVE IL K + Q
Sbjct: 128 PQVIVGTPGRVIDHINRGTLDLSGIKALVLDEADEMLRMGFIDDVESILSKT--PAERQM 185
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P ++ I+ +F+ + T + N+ + ++ A+ + I+
Sbjct: 186 ALFSATMPEEIRRITKRFMTN--PTSVKIANKTSTVENIEQKCLIIGGLQAKLDGLTRIL 243
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
G IIF TK +LA+ L A AL+GD+ Q+ RE T++ +SG+ +
Sbjct: 244 ETEDYDG-VIIFARTKTMTVELAEKLEARGYSAAALNGDLNQAMRERTVSRLKSGQLDIV 302
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+AT+VAARGLD+ + L+I + P D E+Y+HR GRTGRAG
Sbjct: 303 IATDVAARGLDVPRIDLVINYDIPTDTESYVHRIGRTGRAG 343
>gi|308189119|ref|YP_003933250.1| cold-shock DEAD box protein A [Pantoea vagans C9-1]
gi|308059629|gb|ADO11801.1| Cold-shock DEAD box protein A [Pantoea vagans C9-1]
Length = 640
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/340 (40%), Positives = 199/340 (58%), Gaps = 26/340 (7%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L G PIQA +L G D++G A+TG GKT AF LP+L ++ PT
Sbjct: 19 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNNID--PTV---- 72
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDV 240
+AP +LVL PTRELA QV E + + GL LYGG Y Q L++G V
Sbjct: 73 ----KAPQILVLAPTRELAVQVAEAITEFSKHMRGLNVVALYGGQRYDVQLRALRQGPQV 128
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
V+GTPGR+ DH++RG ++LS+L+ VLDEADEMLRMGF+EDVE I+ ++ + QT LF
Sbjct: 129 VVGTPGRLLDHLKRGTLELSNLRGLVLDEADEMLRMGFIEDVETIMAQIPAGH--QTALF 186
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT+P ++ I+ +F+K ++ ++++S R + +A + ++R
Sbjct: 187 SATMPEAIRRITKRFMKDPQEV-------RIQSSMTTRPDISQSYWTAYGRKTDALVRFL 239
Query: 361 SSG--GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G+ L+
Sbjct: 240 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 299
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG
Sbjct: 300 ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAG 339
>gi|323307275|gb|EGA60555.1| Ded1p [Saccharomyces cerevisiae FostersO]
Length = 605
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 199/349 (57%), Gaps = 21/349 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 154 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 213
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 214 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREI 273
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I VED +
Sbjct: 274 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 330
Query: 295 V-----QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 331 TPVGERQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 387
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGF 405
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 388 KSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 446
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAG
Sbjct: 447 RSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAG 495
>gi|323302935|gb|EGA56739.1| Ded1p [Saccharomyces cerevisiae FostersB]
Length = 604
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 199/349 (57%), Gaps = 21/349 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 153 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 212
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 213 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREI 272
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I VED +
Sbjct: 273 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 329
Query: 295 V-----QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 330 TPVGERQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 386
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGF 405
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 387 KSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 445
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAG
Sbjct: 446 RSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAG 494
>gi|160380641|sp|A6ZP47.1|DED1_YEAS7 RecName: Full=ATP-dependent RNA helicase DED1
gi|151945294|gb|EDN63537.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
gi|190407515|gb|EDV10782.1| hypothetical protein SCRG_01592 [Saccharomyces cerevisiae RM11-1a]
gi|207341041|gb|EDZ69208.1| YOR204Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256269590|gb|EEU04872.1| Ded1p [Saccharomyces cerevisiae JAY291]
gi|323335425|gb|EGA76711.1| Ded1p [Saccharomyces cerevisiae Vin13]
gi|323352139|gb|EGA84676.1| Ded1p [Saccharomyces cerevisiae VL3]
Length = 604
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 199/349 (57%), Gaps = 21/349 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 153 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 212
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 213 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREI 272
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I VED +
Sbjct: 273 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 329
Query: 295 V-----QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 330 TPVGERQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 386
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGF 405
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 387 KSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 445
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAG
Sbjct: 446 RSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAG 494
>gi|453382103|dbj|GAC83310.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia paraffinivorans
NBRC 108238]
Length = 580
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/340 (40%), Positives = 198/340 (58%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+R + G E+ PIQA T ++ G D+VG A+TG GKT AF +PIL L S
Sbjct: 27 VRAAISDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRL-----DTS 81
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
KT P L+L PTRELA QV E F Y + + +YGG Y Q L++G
Sbjct: 82 AKT-----PQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGA 136
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
V++GTPGR+ DH++R +D+S+L+F VLDEADEML MGF EDVE IL + D+ +V
Sbjct: 137 QVIVGTPGRVIDHLDRKTLDISNLEFLVLDEADEMLTMGFAEDVERILAETPDSKQVA-- 194
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+PS ++ ++ ++L +D + I + K + N+ L S + + +
Sbjct: 195 LFSATMPSAIRRLAQRYL-NDPQEITV--KSKTATAQNITQRYLQVSHQRKLDALTRFLE 251
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
I+F TK++ +LA+ L A A++GD+ Q+QRE T+ ++G LV
Sbjct: 252 VEEFDA-MIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERTINQLKNGSIDILV 310
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARGLD++ + ++ + P D E+Y+HR GRTGRAG
Sbjct: 311 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 350
>gi|349581361|dbj|GAA26519.1| K7_Ded1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 604
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 199/349 (57%), Gaps = 21/349 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 153 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 212
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 213 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREI 272
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I VED +
Sbjct: 273 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 329
Query: 295 V-----QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 330 TPIGERQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 386
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGF 405
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 387 KSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 445
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAG
Sbjct: 446 RSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAG 494
>gi|409358710|ref|ZP_11237069.1| dead/deah box helicase [Dietzia alimentaria 72]
Length = 539
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 194/346 (56%), Gaps = 25/346 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L +GI F IQ +T + L GSDL+G+ARTG GKT F +P+L + G S
Sbjct: 60 LAERGITHTFAIQELTLPLALAGSDLIGQARTGMGKTYGFGVPLLHRIATGEATRS---- 115
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC-----------LYGGAPYHAQEF 232
P LV++PTREL QV +D + A GLT+ +YGG PY Q
Sbjct: 116 LDGTPRALVIVPTRELCVQVTQDLKI--AATGLTASTENRTRPLKVLSIYGGTPYEQQVD 173
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L+KG+DVV+GTPGR+ D + + L ++ VLDEADEML +GF+ D+E IL V +
Sbjct: 174 ALEKGVDVVVGTPGRLLDLANQSKLVLGKVEVLVLDEADEMLDLGFLPDIEKILRMVPE- 232
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
K QT+LFSAT+P + ++ FL + I + N V S + +V
Sbjct: 233 -KRQTMLFSATMPGPIITLARTFL-TKPTHIRAEAADSGATHENTTQYVYRAHSMDKPEV 290
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ I++ G T+IFT TK +A +LAD L A+HGD+ Q RE +L FR+G
Sbjct: 291 VSRILQADGRGA-TMIFTRTKRTAQKLADDLAERGYSVGAIHGDLGQGAREKSLKAFRTG 349
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ LVAT+VAARG+D++DV +I + P D + Y+HR GRTGRAG
Sbjct: 350 EVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYVHRIGRTGRAG 395
>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
Length = 606
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 144/388 (37%), Positives = 217/388 (55%), Gaps = 35/388 (9%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L+ +G E P+QA +L G DL+G A+TG GKT AF LPIL+ L + ++K
Sbjct: 17 LEREGYEKPTPVQAQAIPYLLKGHDLLGIAQTGTGKTAAFALPILQHLLS-----NRKMP 71
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
+ L+L PTRELA Q+ E F Y +GL +YGG Y Q L G+DV++
Sbjct: 72 SPKMVRALILSPTRELASQIAESFKTYSKGMGLQIATIYGGVKYGPQYKALLGGLDVLVC 131
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ DHIE+ +DLS ++ VLDEAD+ML +GFV+ + + ++ K Q L FSAT
Sbjct: 132 TPGRLIDHIEQKTVDLSQVECFVLDEADQMLDLGFVKPIRQVASRL--PKKRQNLFFSAT 189
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P + ++++ L +D K +++ + + V VL + + ++ ++ Y+
Sbjct: 190 MPKEIGVLASELL-TDPKRVEIT--PEATTAERVSQQVLFIEAQRKRALLSEM---YADA 243
Query: 364 --GRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
RT++FT TK SA ++A L A A+HGD QSQRE L FR+GK LVAT+
Sbjct: 244 VLERTLVFTRTKRSADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFRAGKVRALVATD 303
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA-------------ETITQV 464
+AARG+D+++V +I E P EAY+HR GRT RAG + I +V
Sbjct: 304 IAARGIDVDNVSHVINYELPNVAEAYVHRIGRTARAGKSGVSITLCADDERRLLKDIERV 363
Query: 465 SDSVIPAF---KSAAEELLNNSGLSAAE 489
+ IP+F K A +LL+ + L++ +
Sbjct: 364 TRQRIPSFDRRKDQALKLLDEAILASGQ 391
>gi|323346404|gb|EGA80692.1| Ded1p [Saccharomyces cerevisiae Lalvin QA23]
gi|365762883|gb|EHN04415.1| Ded1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 608
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 199/349 (57%), Gaps = 21/349 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 157 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 216
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 217 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREI 276
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I VED +
Sbjct: 277 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 333
Query: 295 V-----QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 334 TPVGERQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 390
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGF 405
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 391 KSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 449
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAG
Sbjct: 450 RSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAG 498
>gi|307215190|gb|EFN89962.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
Length = 540
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 146/373 (39%), Positives = 209/373 (56%), Gaps = 27/373 (7%)
Query: 97 VEEQERGESEH-------PNAVSRF-RISVP--LREKLKSKGIESLFPIQAMTFDMVLDG 146
V EQ R E E PN V F P + +++ +G IQA + + L G
Sbjct: 60 VVEQYRSEKEITLRGKNIPNPVFNFGEAGFPEYVLKEITKQGFNEPTSIQAQGWPIALSG 119
Query: 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206
D+VG A TG GKTL+++LP + + + P K S+K G P LVL PTRELA+Q+ +
Sbjct: 120 RDMVGIASTGSGKTLSYILPAIVHINSQP-KLSRKDG----PIALVLAPTRELAQQIQQV 174
Query: 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266
D +G + G+ + CLYGGAP AQ L G+++VI TPGR+ D +E G +L + V
Sbjct: 175 ADDFGHSSGIRNTCLYGGAPKGAQARDLDSGVEIVIATPGRLLDFLESGKTNLKRCTYLV 234
Query: 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326
LDEAD ML MGF + I+ ++ QTL++SAT P VK+++ FLK D I+ V
Sbjct: 235 LDEADRMLDMGFEPQIRKIIEQIRPDR--QTLMWSATWPKEVKNLAEDFLK-DYAQIN-V 290
Query: 327 GNEKMKASTNVRHIVLPCSSSARSQVIPDIIR--CYSSGGRTIIFTETKESASQLA---- 380
G+ ++ A+ N+ I+ C + + +++ S +TI+F ETK ++
Sbjct: 291 GSLQLAANHNILQIIDVCQDYEKENKLSTLLKEIMAESENKTIVFIETKRRVDEITRKMK 350
Query: 381 -DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439
D P A +HGD Q +R+ L FRSGK LVAT+VAARGLD+ DV+ +I + P
Sbjct: 351 RDGWP-AVCIHGDKTQQERDWVLQDFRSGKAPILVATDVAARGLDVEDVKFVINFDYPSC 409
Query: 440 VEAYIHRSGRTGR 452
E Y+HR GRTGR
Sbjct: 410 SEDYVHRIGRTGR 422
>gi|407939705|ref|YP_006855346.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
gi|407897499|gb|AFU46708.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
KKS102]
Length = 594
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/331 (40%), Positives = 196/331 (59%), Gaps = 12/331 (3%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E+ PIQA VL+G DL+ A+TG GKT AF LP+L L+ G A K G+
Sbjct: 20 GYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPMLHRLSQG--TAPKNKFGGKG 77
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
LVL PTRELA QV E YG + + S ++GG + Q ++K+G+D+++ TPGR
Sbjct: 78 IRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNPQIDRIKRGVDILVATPGR 137
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ D ++G +DLS+++ VLDEAD ML MGF+ DV+ +L V N Q+LLFSAT
Sbjct: 138 LLDLQQQGFLDLSTVEVLVLDEADRMLDMGFIHDVKKVLALV--PNDKQSLLFSATFSDE 195
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
++ ++ LK+ + N ++ + V H P + QV+ II+ + + + +
Sbjct: 196 IRELANTLLKNPQSIQVTPRNTTVQRISQVIH---PVGRGKKKQVLLHIIQQH-NWSQVL 251
Query: 368 IFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
+FT TK A+ +A+ L A ALHG+ QS R LAGF+SG+ LVAT++AARG+
Sbjct: 252 VFTRTKFGANNVAEFLTKNGVQAMALHGNKSQSARTQALAGFKSGEIRALVATDIAARGI 311
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
DI+D+ ++ E P E Y+HR GRTGRAG
Sbjct: 312 DIDDLPHVVNYEIPNVPEDYVHRIGRTGRAG 342
>gi|312197808|ref|YP_004017869.1| DEAD/DEAH box helicase [Frankia sp. EuI1c]
gi|311229144|gb|ADP81999.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
Length = 566
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 152/402 (37%), Positives = 212/402 (52%), Gaps = 24/402 (5%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ESE + P+ L G E PIQA T +LDG D+VG A+TG GKT AF
Sbjct: 3 ESEDQPTFHDLGLGSPVLRALTELGYEVPSPIQAGTIPALLDGRDVVGLAQTGTGKTAAF 62
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLY 222
LPIL S+ A LVL PTREL QV E F Y + GL +Y
Sbjct: 63 ALPIL----------SRIDARSTATQALVLAPTRELVLQVAEAFGRYAHHLTGLHVLPVY 112
Query: 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282
GG Y Q ++G VV+GTPGR+ DH+ERG +DL L+ VLDEADEMLRMGF E+V
Sbjct: 113 GGQAYAPQLAGFRRGAQVVVGTPGRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEV 172
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
+ IL DA +V LFSAT+P+ ++ IS ++L+ +++ + + N R L
Sbjct: 173 DRILADTPDAKQVA--LFSATMPAPIRRISRQYLRD---PVEITVRARTVTAANTRQRFL 227
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQR 398
+ + + ++ IIF TK + +A+ L A++GD+ Q QR
Sbjct: 228 TVAGPRKMDALTRVLEVEPFEA-MIIFVRTKSATEDVAERLRSRGFATEAINGDLSQPQR 286
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV--E 456
E +A R G LVAT+VAARGLD+ + ++ + P D E+Y+HR GRTGRAG E
Sbjct: 287 EKLIAQLRDGTLDLLVATDVAARGLDVERITHVVNYDIPTDPESYVHRIGRTGRAGRSGE 346
Query: 457 AAETITQVSDSVIPAFKSAAEELLNNSGL-SAAELLAKALAK 497
A +T ++ A + A + L L + A++ A+ +AK
Sbjct: 347 ALLLVTPREKGLLAAIEKATRQPLTEMELPTPADVNARRVAK 388
>gi|10177293|dbj|BAB10554.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
Length = 564
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/338 (38%), Positives = 197/338 (58%), Gaps = 15/338 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E + G PIQA + M L G DL+G A TG GKTLA++LP L ++ P +
Sbjct: 151 EAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQP-----R 205
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
G P VL+L PTRELA Q+ E+ +G G+ S C+YGGAP Q L++G+++V
Sbjct: 206 LGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIV 265
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
I TPGR+ D +E + +L + + VLDEAD ML MGF + I+ ++ QTLL+S
Sbjct: 266 IATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR--QTLLWS 323
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT P V+ ++ +FL+ K I +G+ +KA+ ++ ++ + + + +++
Sbjct: 324 ATWPREVETLARQFLRDPYKAI--IGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLM 381
Query: 362 SGGRTIIFTETKESASQLA-----DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G + +IF ETK Q+ D P A A+HGD QS+R+ LA F+SG+ + AT
Sbjct: 382 DGSKILIFVETKRGCDQVTRQLRMDGWP-ALAIHGDKTQSERDRVLAEFKSGRSPIMTAT 440
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+VAARGLD+ D++ ++ + P +E YIHR GRTGRAG
Sbjct: 441 DVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAG 478
>gi|398365729|ref|NP_014847.3| Ded1p [Saccharomyces cerevisiae S288c]
gi|118411|sp|P06634.2|DED1_YEAST RecName: Full=ATP-dependent RNA helicase DED1; AltName: Full=DEAD
box protein 1
gi|3647|emb|CAA40546.1| Ded1p (Spp81p) [Saccharomyces cerevisiae]
gi|1420479|emb|CAA99419.1| DED1 [Saccharomyces cerevisiae]
gi|285815083|tpg|DAA10976.1| TPA: Ded1p [Saccharomyces cerevisiae S288c]
Length = 604
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 199/349 (57%), Gaps = 21/349 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 153 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 212
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 213 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREI 272
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I VED +
Sbjct: 273 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 329
Query: 295 V-----QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 330 TPVGERQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 386
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGF 405
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 387 KSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 445
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAG
Sbjct: 446 RSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAG 494
>gi|312139814|ref|YP_004007150.1| dead/deah box helicase [Rhodococcus equi 103S]
gi|311889153|emb|CBH48466.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
Length = 448
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/339 (39%), Positives = 185/339 (54%), Gaps = 19/339 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L L GI + FPIQA T +L G D++GR TG GKTLAF LP+L L G ++ S
Sbjct: 18 LVHALGRAGISAPFPIQAATIPDILAGRDVLGRGPTGSGKTLAFGLPLLVRLKGGASRPS 77
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ P +VL PTRELA Q+ + D A+GL + + GG P+ AQ KL + +D
Sbjct: 78 R-------PRAVVLAPTRELAAQIEKALDEPALALGLRTATIVGGVPFKAQAVKLSRTVD 130
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
VVI TPGR+ DH+ +G I L ++ +DEAD M +GF+ V IL + + Q LL
Sbjct: 131 VVIATPGRLADHVSQGTIALDDVRITTVDEADHMAELGFLPQVTEILDRTPE--TAQRLL 188
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSATL V + ++L + E + A ++ H VL R P + R
Sbjct: 189 FSATLDGEVDTLVARYLHD---PVTHATAEAVAAVDSMEHHVL---HVPREIKYPTVARI 242
Query: 360 YSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+ GRT++F TK +L D L A LHGD Q R LA F G LVA
Sbjct: 243 AAREGRTLLFVRTKAGVDRLTDELRAVGIAAGGLHGDKPQGHRTRVLAEFAGGTLPVLVA 302
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
T+VAARG+ ++DV L++ +PP + +AY+HR+GRT RAG
Sbjct: 303 TDVAARGIHVDDVSLVVHVDPPTEPKAYLHRAGRTARAG 341
>gi|381399445|ref|ZP_09924541.1| DEAD/DEAH box helicase domain protein [Microbacterium
laevaniformans OR221]
gi|380773208|gb|EIC06816.1| DEAD/DEAH box helicase domain protein [Microbacterium
laevaniformans OR221]
Length = 507
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/339 (40%), Positives = 198/339 (58%), Gaps = 21/339 (6%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L SKGI FPIQ T + L G D++G+A+TG GKT F +P+++ L
Sbjct: 15 EALASKGIVDAFPIQEQTIPLGLPGQDIIGQAKTGTGKTFGFGIPVVQRL---------- 64
Query: 182 TGYGRAPSV--LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
G AP V L+++PTRELA QV+ED D+ + +YGG Y Q +LK G
Sbjct: 65 -GLDPAPGVKALIVVPTRELAVQVYEDMDMLTQNRSTSVVAIYGGKAYEGQIDQLKAGAQ 123
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+GTPGR+ D + +DLS VLDEAD+ML +GF+ D+E I KV Q L
Sbjct: 124 IVVGTPGRLIDLNNQRLLDLSGAVEVVLDEADKMLDLGFLADIEKIFQKVAPVRHTQ--L 181
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT+P + ++ +F+ S+ I ++ N++H+V S + +VI I++
Sbjct: 182 FSATMPGPIVALARRFM-SNPIHIRATDPDEGLTQANIKHLVYRAHSLDKDEVIARILQA 240
Query: 360 YSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
G+T++FT TK +A +L D L A A+HGD+ Q RE ++A F++GK L+A
Sbjct: 241 EGR-GKTVVFTRTKRAAQKLVDELNDRGFNAGAVHGDMSQEARERSMAAFKAGKKDVLIA 299
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
T+VAARG+D++DV +I P D + Y+HR+GRTGRAG
Sbjct: 300 TDVAARGIDVDDVTHVINHTIPDDEKTYLHRAGRTGRAG 338
>gi|392296531|gb|EIW07633.1| Ded1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 631
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 199/349 (57%), Gaps = 21/349 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 180 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 239
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 240 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREI 299
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I VED +
Sbjct: 300 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 356
Query: 295 V-----QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 357 TPVGERQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 413
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGF 405
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 414 KSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 472
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAG
Sbjct: 473 RSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAG 521
>gi|2231116|emb|CAA65745.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB8]
Length = 510
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/337 (41%), Positives = 192/337 (56%), Gaps = 21/337 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + E L +G+ + PIQA + L+G DL+G+ARTG GKTLAF LPI E L
Sbjct: 6 FPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAP 65
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+ GR P LVL PTRELA QV + A L +YGG Y Q+
Sbjct: 66 SQER-------GRKPRALVLTPTRELALQVASELTAV--APHLKVVAVYGGTGYGKQKEA 116
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L +G D V+ TPGR D++ +G +DLS ++ VLDEADEML MGF E+VE +L +
Sbjct: 117 LLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR 176
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QTLLFSATLPSW K ++ +++K + I+++ +E + +P R +V+
Sbjct: 177 --QTLLFSATLPSWAKRLAERYMK-NPVLINVIKDEPVTYEEEA----VPAPVRGRLEVL 229
Query: 354 PDIIRCYSSGGRTIIFT----ETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGK 409
D++ +S R ++FT ET+E A L L A+ALHGD+ Q +RE L FR G+
Sbjct: 230 SDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGE 288
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
LVAT+VAARGLDI V L++ P EAY HR
Sbjct: 289 VRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHR 325
>gi|302558562|ref|ZP_07310904.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
gi|302476180|gb|EFL39273.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
Length = 868
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 202/362 (55%), Gaps = 17/362 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI + FPIQ MT + L G+D++G+A+TG GKTL F LP+LE +T A +
Sbjct: 53 EALEAVGIITPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVT---VPADVE 109
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G R AP LV++PTREL QV D G + +YGG Y Q LK
Sbjct: 110 AGRARPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVEALK 169
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DVV+GTPGR+ D + ++L +K VLDEADEML +GF+ DVE I+ + K
Sbjct: 170 KGVDVVVGTPGRLLDLAGQKKLNLKHVKALVLDEADEMLDLGFLPDVEKIINFL--PVKR 227
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ +++ N V + + +++
Sbjct: 228 QTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTTQFVYRAHNMDKPEMVSR 287
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
I++ G ++F TK +A+ LAD L + A+HGD+ Q RE L FR+GK
Sbjct: 288 ILQA-DGRGLVMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVD 346
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPA 471
LV T+VAARG+D+ V +I + P D + Y+HR GRTGRAG + IT V IP
Sbjct: 347 VLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGT-AITLVDWDDIPR 405
Query: 472 FK 473
++
Sbjct: 406 WQ 407
>gi|293393148|ref|ZP_06637463.1| ATP-dependent RNA helicase DeaD [Serratia odorifera DSM 4582]
gi|291424294|gb|EFE97508.1| ATP-dependent RNA helicase DeaD [Serratia odorifera DSM 4582]
Length = 642
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 202/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQA +L+G D++G A+TG GKT AF LP+L +L
Sbjct: 14 LSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNL---- 69
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
AS K AP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 70 -DASLK-----APQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQLRAL 123
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG ++LS+L VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 124 RQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEH- 182
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 183 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSITTR---------------P 219
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 220 DISQSYWTAQGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGD 279
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 280 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 339
Query: 453 AG 454
AG
Sbjct: 340 AG 341
>gi|117922031|ref|YP_871223.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117614363|gb|ABK49817.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 619
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 149/418 (35%), Positives = 219/418 (52%), Gaps = 36/418 (8%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L L G E+ PIQ+ + D ++ G D++G+A+TG GKT AF LP+L +T+
Sbjct: 13 LSENLLRALDELGYENPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQA 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
P +LVL PTRELA QV E F Y + G +YGG H Q L
Sbjct: 73 V-----------PQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNAL 121
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K+G V++GTPGR+ DH+ RG + L +L+ VLDEADEML+MGF++D+E IL +
Sbjct: 122 KRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQR- 180
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P +K ++ K LK D I + + S R + + S + + +
Sbjct: 181 -QLALFSATMPEQIKRVANKHLK-DATNISIAASHTTVDSIEQRFVQV--SQHNKLEALV 236
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
++ ++ G IIF T+ S +LA+ L + LHGD+ Q RE + +SGK
Sbjct: 237 RVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKL 295
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG-------------VEA 457
L+AT+VAARGLD+ + ++ + P D EAY+HR GRTGRAG +
Sbjct: 296 DILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRM 355
Query: 458 AETITQVSDSVIPAFKSAAEELLNNSGLS-AAELLAKALAKAVGYTEIKSRSLLSSLE 514
TI + ++S I K + E + LS E LA+ + + + + L LE
Sbjct: 356 LRTIERATNSRISPMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLE 413
>gi|294631256|ref|ZP_06709816.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14]
gi|292834589|gb|EFF92938.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14]
Length = 960
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/369 (37%), Positives = 205/369 (55%), Gaps = 16/369 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT---NGPTKA 178
E L++ GI + FPIQ MT + L G+D++G+A+TG GKTL F LP+LE +T +
Sbjct: 72 EALEAVGITTPFPIQEMTLPVALTGTDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 131
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
+K AP LV++PTREL QV D G + +YGG Y Q LK G+
Sbjct: 132 AKPEALTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVVAIYGGRAYEPQVEALKNGV 191
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D + ++L +K VLDEADEML +GF+ DVE I+G + K QT+
Sbjct: 192 DVVVGTPGRLLDLAGQKKLNLKHVKALVLDEADEMLDLGFLPDVEKIIGML--PAKRQTM 249
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P V ++ +++ +++ N + + + +++ I++
Sbjct: 250 LFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTTQFIYRAHNMDKPEMVARILQ 309
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G +IF TK +A+ LAD L + A+HGD+ Q RE L FR+GK LV
Sbjct: 310 AEGR-GLAMIFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 368
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS 474
T+VAARG+D+ V +I + P + + Y+HR GRTGRAG + IT V IP +
Sbjct: 369 CTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGT-AITLVDWDDIPRW-- 425
Query: 475 AAEELLNNS 483
+L+N +
Sbjct: 426 ---QLINKA 431
>gi|349578148|dbj|GAA23314.1| K7_Dbp3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 523
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 195/329 (59%), Gaps = 19/329 (5%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA+ + +L G D+VG A TG GKT AF +P + L N K R VLV+
Sbjct: 137 PIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK--------RGIQVLVI 188
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA Q++++ V VG+ CC+YGG P Q +LKK VV+ TPGR+ D ++
Sbjct: 189 SPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQ 247
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G++DLS + + VLDEAD ML GF ED++ I+ + DA+K QTL+F+AT P V+ +++
Sbjct: 248 EGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRET-DASKRQTLMFTATWPKEVRELAS 306
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR----TIIF 369
F+ + K + + +++ A+ + IV + + + ++++ Y SG + +IF
Sbjct: 307 TFMNNPIK-VSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIF 365
Query: 370 TETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425
K+ A+++ L A+HGD+ Q QR L F+SGK L+AT+VAARGLDI
Sbjct: 366 ALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDI 425
Query: 426 NDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+V+ +I P VE Y+HR GRTGRAG
Sbjct: 426 PNVKTVINLTFPLTVEDYVHRIGRTGRAG 454
>gi|365836774|ref|ZP_09378161.1| cold-shock DEAD-box protein A [Hafnia alvei ATCC 51873]
gi|364563456|gb|EHM41265.1| cold-shock DEAD-box protein A [Hafnia alvei ATCC 51873]
Length = 641
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 158/435 (36%), Positives = 229/435 (52%), Gaps = 72/435 (16%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
++ P+ + L G E PIQA +L+G D++G A+TG GKT AF LP+L ++ P
Sbjct: 18 LAAPIIQALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNID--P 75
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ +AP VLVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 76 SL--------KAPQVLVLAPTRELAVQVSEAMADFAKHMNGVNVVALYGGQRYDVQLRAL 127
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG ++LS+L VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 128 RQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAQH- 186
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 187 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSITTR---------------P 223
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 224 DISQSYWTVFGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGD 283
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD++ + L++ + P D E+Y+HR GRTGR
Sbjct: 284 MNQALREQTLERLKDGRLDILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGR 343
Query: 453 AG--------VEAAE-----TITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAV 499
AG VE E I ++ IP + ELL L A+ AK +
Sbjct: 344 AGRAGRALLFVENRERRLLRNIERIMKLTIPEVEIPNAELLGQRRL--AKFAAKVQQQLE 401
Query: 500 GYTEIKSRSLLSSLE 514
K R LL+ L+
Sbjct: 402 SSDLDKYRDLLTKLQ 416
>gi|261820134|ref|YP_003258240.1| ATP-dependent RNA helicase DeaD [Pectobacterium wasabiae WPP163]
gi|261604147|gb|ACX86633.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
WPP163]
gi|385870319|gb|AFI88839.1| Cold-shock DEAD box protein A [Pectobacterium sp. SCC3193]
Length = 632
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 202/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQA +L+G D++G A+TG GKT AF LP+L +L
Sbjct: 13 LSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFALPLLNNL---- 68
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
K K AP +LVL PTRELA QV E + + + G+ LYGG Y Q L
Sbjct: 69 -KPELK-----APQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+ G +V+GTPGR+ DH++RG +DLS+L VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 123 RGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPATH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKDPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTVQGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|254821954|ref|ZP_05226955.1| RhlE [Mycobacterium intracellulare ATCC 13950]
Length = 452
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 198/341 (58%), Gaps = 18/341 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L KGIES F IQ +T + L G DL+G+ARTG GKT AF +P+L+ +T+G T A G
Sbjct: 25 LAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITSG-TAARPLNG 83
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG------LTSCCLYGGAPYHAQEFKLKKG 237
P L+++PTREL QV +D + + L+ +YGG PY AQ L+ G
Sbjct: 84 ---TPRALIVVPTRELCLQVTDDLALAAKHLTADEGRRLSVVPIYGGRPYEAQIEALRAG 140
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++ Q+
Sbjct: 141 ADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPVDR--QS 198
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+LFSAT+P + ++ F+ + T V++ + + +++ I+
Sbjct: 199 MLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQY-AYRAHALDKVELVSRIL 257
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G T+IFT TK +A ++AD L A+HGD+ Q RE L FR+G L
Sbjct: 258 QAEGRGA-TMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRTGDIDVL 316
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARG+DI+DV +I + P D +AY+HR GRTGRAG
Sbjct: 317 VATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAG 357
>gi|422007198|ref|ZP_16354184.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri Dmel1]
gi|414097088|gb|EKT58743.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri Dmel1]
Length = 645
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 203/364 (55%), Gaps = 61/364 (16%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S + L G E PIQ +++DG+D++G A+TG GKT AF LP+L ++ P
Sbjct: 14 LSASILTALNDLGYEKPSPIQQQCIPLLMDGNDVLGMAQTGSGKTAAFSLPLLHNI--DP 71
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+AP +LVL PTRELA QV E DF + V + LYGG Y Q
Sbjct: 72 DL--------KAPQILVLAPTRELAVQVAEAMSDFSKHMNRVNV--VALYGGQRYDVQLR 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +V+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF+EDVE I+ ++
Sbjct: 122 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAE 181
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K K+ +++AS R
Sbjct: 182 H--QTALFSATMPEPIRRITRRFMKDPKEI-------RIQASITTR-------------- 218
Query: 353 IPDIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y + G R IIF TK + ++A+ L + AL+
Sbjct: 219 -PDIAQSYWTVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN 277
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRT
Sbjct: 278 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRT 337
Query: 451 GRAG 454
GRAG
Sbjct: 338 GRAG 341
>gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1]
gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1]
Length = 520
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 196/337 (58%), Gaps = 24/337 (7%)
Query: 127 KGIESL-----FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
KGIE + PIQ + ++L+G D++G+A+TG GKTLAF G SK
Sbjct: 17 KGIEMMGYVSPSPIQEKSIPVLLEGQDIIGQAQTGTGKTLAF----------GSVLLSKI 66
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
G+ L+L PTRELA Q+HE+ G L+ ++GG+ Q LK+G D+V
Sbjct: 67 QKEGKHVKALILSPTRELALQIHEELKRIGKCTNLSIVSVFGGSDIERQIKDLKRGADIV 126
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
+GTPGR++D + R + ++++ F VLDEADEML MGFVED+E IL D NK QT+LFS
Sbjct: 127 VGTPGRVQDLMRRRVLKINNIDFMVLDEADEMLNMGFVEDIETILKATPD-NK-QTVLFS 184
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT+P+ +K I++ +++ D I + K K ++ V + + + + I+
Sbjct: 185 ATMPATIKKIASNYMQDDYMHIQI--KSKTKTASTVSQYYFETRPTNKFETLCRILDSRQ 242
Query: 362 SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
TIIF +TK S ++ + A+HGD+ Q+QR TL F+SG LVAT+
Sbjct: 243 MEN-TIIFCKTKRSVDEVVASMQQKHYDVEAMHGDLSQNQRTNTLKRFKSGHIQYLVATD 301
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAARG+D++++ +I E P+D E YIHR GRTGRA
Sbjct: 302 VAARGIDVDNISHVINYEMPQDEELYIHRIGRTGRAN 338
>gi|395203708|ref|ZP_10394801.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium
humerusii P08]
gi|422574412|ref|ZP_16649966.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
gi|314927518|gb|EFS91349.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
gi|328907794|gb|EGG27557.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium
humerusii P08]
Length = 536
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 206/365 (56%), Gaps = 11/365 (3%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P + + + + + L+ GI S FPIQAM+ + ++G+DL+G+ARTG GKTLAF + I
Sbjct: 32 PTSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITI 91
Query: 168 LESLT-NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226
L+ +T G + T G+ P LV+ PTRELA QV +D G +YGG
Sbjct: 92 LQRITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSQDISTAASVRGARVLTVYGGVG 150
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
Y Q L+ G+DVV+GTPGR+ D +R N+DLS + VLDEADEML +GF+ DVE ++
Sbjct: 151 YEPQIDALQAGVDVVVGTPGRLLDLSQRKNLDLSHVHIVVLDEADEMLDLGFLPDVENLI 210
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346
G+ QT+LFSAT+P+ + ++ L + G + + + V
Sbjct: 211 GRTPTPR--QTMLFSATMPAPIMALARSQLNRPVH-VRAEGADTQATVPDTQQFVYQAHP 267
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTL 402
+ ++I I++ + + IIF TK + +L+D L ARA+HGD+ Q RE L
Sbjct: 268 LDKIEIIGRILQA-NDAEKVIIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKAL 326
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE-AAETI 461
FR G LVAT+VAARG+D+ V +I E P D + Y+HR GRTGRAG + A T+
Sbjct: 327 KRFRHGDVTILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTL 386
Query: 462 TQVSD 466
+D
Sbjct: 387 VDWAD 391
>gi|418047503|ref|ZP_12685591.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
gi|353193173|gb|EHB58677.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
Length = 503
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 201/362 (55%), Gaps = 22/362 (6%)
Query: 105 SEHPN-AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
+ HP + ++ + + L +G E F IQ T M L G DL+G+ARTG GKTLAF
Sbjct: 5 TTHPQLSFAQLGVRDEIVRALAEEGKEYAFAIQEQTLPMALAGDDLIGQARTGMGKTLAF 64
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG------LT 217
+P+L +T + P LV++PTREL QVH D + LT
Sbjct: 65 GVPLLHRITTDTERPLSGI-----PRALVVVPTRELCLQVHGDLVAAAKYLQADESRKLT 119
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
+YGG PY Q L+KG+DVV+GTPGR+ D ++G++ L L VLDEADEML +G
Sbjct: 120 VTAIYGGRPYEPQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLG 179
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F+ D+E IL ++ + K Q +LFSAT+P + ++ F+ I G +
Sbjct: 180 FLPDIERILKQIPE--KRQAMLFSATMPDPIITLARTFMNQPTH-IRAEGVQGAATHDTT 236
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGD 392
V + + +++ I++ G T+IFT TK +A ++AD L G R A+HGD
Sbjct: 237 EQFVYRAHALDKVEMVSRILQAQGRGA-TMIFTRTKRTAQKVADEL-GERGFKVGAVHGD 294
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q RE L FR+G LVAT+VAARG+DI+D+ +I + P D +AY+HR GRTGR
Sbjct: 295 LGQIAREKALKAFRTGDVDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGR 354
Query: 453 AG 454
AG
Sbjct: 355 AG 356
>gi|109896747|ref|YP_660002.1| DEAD/DEAH box helicase [Pseudoalteromonas atlantica T6c]
gi|109699028|gb|ABG38948.1| ATP-dependent RNA helicase CsdA [Pseudoalteromonas atlantica T6c]
Length = 579
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/340 (40%), Positives = 196/340 (57%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + L+ G E PIQA ++++G DL+G A+TG GKT AF LP+L ++ +
Sbjct: 18 LLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPMLANVDANNSNTQ 77
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGI 238
+LVL PTRELA QV E F VY + L +YGG+ Y Q +L++G
Sbjct: 78 ----------LLVLAPTRELAIQVAEAFQVYASFSRKLNVLPIYGGSSYDNQIRQLRRGA 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DHI++G + L +LKF VLDEADEMLRMGF++DVE IL + QT
Sbjct: 128 QVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHA--PAERQTA 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P ++ I+ ++L SD K + + K+ ++ ++ + + + + I+
Sbjct: 186 LFSATMPDPIRKITKRYL-SDPKQVKI--ESKVATASTIKQRYCQVAGHHKLEALTRIME 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
IIF TK + +L++ L L+GDI Q+ RE T+ + GK LV
Sbjct: 243 VEEFDA-VIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKIDILV 301
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG
Sbjct: 302 ATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAG 341
>gi|226365826|ref|YP_002783609.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
gi|226244316|dbj|BAH54664.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4]
Length = 534
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/344 (40%), Positives = 197/344 (57%), Gaps = 23/344 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + L G DL+G+ARTG GKT F +P+L +++G T + G
Sbjct: 53 LDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRISSGTTGTAALDG 112
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV---------GLTSCCLYGGAPYHAQEFKL 234
RA LV++PTREL QV +D + GA L +YGG PY Q L
Sbjct: 113 TPRA---LVIVPTRELCIQVTKDLE---GAAKYLKGEKNKPLEVLAIYGGRPYETQIATL 166
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+KG DVV+GTPGR+ D +G++ L ++ VLDEADEML +GF+ D+E IL V D K
Sbjct: 167 QKGADVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILNMVPD--K 224
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT+LFSAT+P + ++ FL ++ +HI + +++++
Sbjct: 225 RQTMLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYR-AHALDKAEMVA 283
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
+++ G T+IFT TK +A +++D L ++HGD+ Q RE L FRSGK
Sbjct: 284 RVLQADGRGA-TMIFTRTKRTAQKVSDELAERGFAVGSVHGDLNQVAREKALKAFRSGKI 342
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG
Sbjct: 343 DVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAG 386
>gi|72160918|ref|YP_288575.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71914650|gb|AAZ54552.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 503
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/357 (38%), Positives = 206/357 (57%), Gaps = 18/357 (5%)
Query: 105 SEHPNAVSRFR---ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
S H + + FR + + + L+++GI + FPIQ+M + L G+D++G+ARTG GKT
Sbjct: 11 STHSSDQTTFRDLGVIDDIADALEAEGIVAPFPIQSMALPLALTGADIIGQARTGTGKTF 70
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221
AF LP+L+ + P G + P LV++PTRELA QV D + + +
Sbjct: 71 AFGLPLLQRVHTQP-------GSAKRPRALVVVPTRELAIQVAADLATASKRIDVRIATV 123
Query: 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281
YGG Y Q L+KG+D+V+GTPGR+ D +++ ++ LS + VLDEAD+ML +GF+ D
Sbjct: 124 YGGRAYEPQISALRKGVDIVVGTPGRLLDLVKQRHLILSEVTALVLDEADKMLDLGFLPD 183
Query: 282 VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341
+E IL K D QT+LFSAT+PS + +S K+L+ I + S V V
Sbjct: 184 IERILAKTPDQR--QTMLFSATMPSEIVALSRKYLRRPTH-IRAEDDPLDTGSGQVTQHV 240
Query: 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQ 397
+ +++ +++ + G T++F +TK ++ L A A+HGD+ Q Q
Sbjct: 241 FRTHPLDKLEMLARLLQARNR-GLTMVFCQTKRECHHVSTELCRRGFAAAAVHGDLGQGQ 299
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RE L FR+GK LVAT+VAARG+D++DV ++ E P D + Y HR GRTGRAG
Sbjct: 300 RERALRAFRNGKVDVLVATDVAARGIDVDDVTHVVNYECPDDEKTYTHRIGRTGRAG 356
>gi|397664785|ref|YP_006506323.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila]
gi|395128196|emb|CCD06401.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila]
Length = 566
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/330 (42%), Positives = 197/330 (59%), Gaps = 29/330 (8%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA T ++L G D + A+TG GKT AF LPIL++L+ P ++ + L+L
Sbjct: 8 PIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNLS--PEISTTQA--------LIL 57
Query: 194 LPTRELAKQVHEDFDV---YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKD 250
PTRELA QV E F++ Y V + C GG Y Q +L+ G VV+GTPGRI D
Sbjct: 58 APTRELAIQVAEQFELLSKYQRNVTIAVLC--GGQEYGRQLKQLRSGAQVVVGTPGRILD 115
Query: 251 HIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKH 310
HI++G + L++LK +LDEADEMLRMGF+EDVE IL K+ + K Q LFSAT+P ++
Sbjct: 116 HIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPE--KKQMALFSATMPYRIRQ 173
Query: 311 ISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTII 368
I+ +L +D +I++ +M+ +T ++ L S + + ++ G I+
Sbjct: 174 IANTYL-NDPASIEI----RMETATVKSIEQRFLFASVHQKPDALIRVLEVEDYQG-VIV 227
Query: 369 FTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
F TK S ++A+LL A A+HGDI QS RE +A F+ G LVAT+VAARGLD
Sbjct: 228 FVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVAARGLD 287
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ V +I + P D E Y+HR GRTGRAG
Sbjct: 288 VERVTHVINYDMPHDNETYVHRIGRTGRAG 317
>gi|332304872|ref|YP_004432723.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410642867|ref|ZP_11353376.1| ATP-dependent RNA helicase DeaD [Glaciecola chathamensis S18K6]
gi|410646139|ref|ZP_11356593.1| ATP-dependent RNA helicase DeaD [Glaciecola agarilytica NO2]
gi|332172201|gb|AEE21455.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410134478|dbj|GAC04992.1| ATP-dependent RNA helicase DeaD [Glaciecola agarilytica NO2]
gi|410137750|dbj|GAC11563.1| ATP-dependent RNA helicase DeaD [Glaciecola chathamensis S18K6]
Length = 576
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/340 (40%), Positives = 196/340 (57%), Gaps = 21/340 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + L+ G E PIQA ++++G DL+G A+TG GKT AF LP+L ++ +
Sbjct: 18 LLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPMLANVDANNSNTQ 77
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGI 238
+LVL PTRELA QV E F VY + L +YGG+ Y Q +L++G
Sbjct: 78 ----------LLVLAPTRELAIQVAEAFQVYASFSRKLNVLPIYGGSSYDNQIRQLRRGA 127
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
VV+GTPGR+ DHI++G + L +LKF VLDEADEMLRMGF++DVE IL + QT
Sbjct: 128 QVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHA--PAERQTA 185
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P ++ I+ ++L SD K + + K+ ++ ++ + + + + I+
Sbjct: 186 LFSATMPDPIRKITKRYL-SDPKQVKI--ESKVATASTIKQRYCQVAGHHKLEALTRIME 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
IIF TK + +L++ L L+GDI Q+ RE T+ + GK LV
Sbjct: 243 VEEFDA-VIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKIDILV 301
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+V ARGLD+ V +I + P D E+Y+HR GRTGRAG
Sbjct: 302 ATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAG 341
>gi|190407035|gb|EDV10302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
gi|207345345|gb|EDZ72198.1| YGL078Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146428|emb|CAY79685.1| Dbp3p [Saccharomyces cerevisiae EC1118]
gi|365765558|gb|EHN07065.1| Dbp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 523
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 195/329 (59%), Gaps = 19/329 (5%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA+ + +L G D+VG A TG GKT AF +P + L N K R VLV+
Sbjct: 137 PIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK--------RGIQVLVI 188
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA Q++++ V VG+ CC+YGG P Q +LKK VV+ TPGR+ D ++
Sbjct: 189 SPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQ 247
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G++DLS + + VLDEAD ML GF ED++ I+ + DA+K QTL+F+AT P V+ +++
Sbjct: 248 EGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRET-DASKRQTLMFTATWPKEVRELAS 306
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR----TIIF 369
F+ + K + + +++ A+ + IV + + + ++++ Y SG + +IF
Sbjct: 307 TFMNNPIK-VSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIF 365
Query: 370 TETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425
K+ A+++ L A+HGD+ Q QR L F+SGK L+AT+VAARGLDI
Sbjct: 366 ALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDI 425
Query: 426 NDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+V+ +I P VE Y+HR GRTGRAG
Sbjct: 426 PNVKTVINLTFPLTVEDYVHRIGRTGRAG 454
>gi|383188464|ref|YP_005198592.1| DNA/RNA helicase [Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371586722|gb|AEX50452.1| DNA/RNA helicase, superfamily II [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 641
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 202/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQA +L+G D++G A+TG GKT AF LP+L ++
Sbjct: 14 LSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNI---- 69
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
AS K AP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 70 -DASLK-----APQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRAL 123
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G VV+GTPGR+ DH++RG ++LS+L VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAQH- 182
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 183 -QTALFSATMPEAIRRITRRFMKDPQEV-------RIQSSVTTR---------------P 219
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 220 DISQSYWSVYGLRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGD 279
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 280 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 339
Query: 453 AG 454
AG
Sbjct: 340 AG 341
>gi|357126556|ref|XP_003564953.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like
[Brachypodium distachyon]
Length = 496
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/356 (39%), Positives = 205/356 (57%), Gaps = 20/356 (5%)
Query: 108 PNAVSRFR-ISVP---LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P V FR + P L+E K+ +E PIQ+ + M L G DL+G A TG GKTLA+
Sbjct: 89 PKPVCDFRDVGFPEYVLQEITKAGFVEPT-PIQSQGWPMALKGRDLIGIAETGSGKTLAY 147
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+LP + + P A G P VLVL PTRELA Q+ ++ +G + + S C+YG
Sbjct: 148 LLPAIVHVNAQPILAP-----GDGPIVLVLAPTRELAVQIQQETTKFGASSKIKSTCIYG 202
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G P Q L+KG+++VI TPGR+ D IE + +L + + VLDEAD ML MGF ++
Sbjct: 203 GVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIK 262
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
I+ ++ QTL +SAT P V+ ++ FL K I +G+E++KA+ + V
Sbjct: 263 KIVSQIRPDR--QTLYWSATWPKEVEQLARNFLFDPYKVI--IGSEELKANHAICQYVEI 318
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-----DLLPGARALHGDIQQSQR 398
S S + + +++ G R +IF +TK+ Q+ D P A ++HGD Q++R
Sbjct: 319 LSESQKYNKLVNLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKSQAER 377
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ L+ F+SGK + AT+VAARGLD+ DV+ +I + P +E Y+HR GRTGRAG
Sbjct: 378 DWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 433
>gi|158514835|sp|A3LQ01.3|DED1_PICST RecName: Full=ATP-dependent RNA helicase DED1
Length = 647
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 202/362 (55%), Gaps = 20/362 (5%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLF----PIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P+ ++ F + PL E L S F P+Q + +V G DL+ A+TG GKT F
Sbjct: 164 PDPITSF-TAPPLDELLVENITMSRFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGF 222
Query: 164 VLPIL-ESLTNGPTKASKKTG----YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
+ P+L ES NGP ++ TG + P++LV+ PTREL Q++++ + +
Sbjct: 223 LFPVLSESYINGPAPIAESTGAFSSHKVHPTILVMAPTRELVSQIYDEAKKFAYRSWVKP 282
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
+YGGA Q L KG D+++ TPGR+KD +ERG + L+++K+ VLDEAD ML MGF
Sbjct: 283 AVVYGGADIGQQIRNLDKGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGF 342
Query: 279 VEDVELILGKVE--DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
+ I+ + + D QTL+FSAT P+ ++ ++ FLK I L S N
Sbjct: 343 EPQIRHIVQECDMPDVQDRQTLMFSATFPTDIQMLARDFLKD---YIFLSVGRVGSTSEN 399
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGD 392
+ +L + V+ D++ G TIIFTETK A LAD L A A+HGD
Sbjct: 400 ITQKILYVEDEEKKSVLLDLLSA-GDAGLTIIFTETKRMADNLADFLYDQGFPATAIHGD 458
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
Q +RE LA F+SG LVAT VAARGLDI +V +I + P D++ Y+HR GRTGR
Sbjct: 459 RSQYEREKALAAFKSGAAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGR 518
Query: 453 AG 454
AG
Sbjct: 519 AG 520
>gi|431931271|ref|YP_007244317.1| DNA/RNA helicase [Thioflavicoccus mobilis 8321]
gi|431829574|gb|AGA90687.1| DNA/RNA helicase, superfamily II [Thioflavicoccus mobilis 8321]
Length = 417
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/344 (39%), Positives = 203/344 (59%), Gaps = 19/344 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
LR + ++G S PIQA +LDG D++ A+TG GKT AF LP+L+ L
Sbjct: 12 LRRAIAAQGYRSPTPIQAQAIPAILDGRDVLAGAQTGTGKTAAFTLPMLQRL------GE 65
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
++TG+ R P LVL PTRELA QV E YG + L S ++GG Q +L++G+D
Sbjct: 66 RQTGHQR-PRALVLTPTRELAAQVGESIVTYGRYLPLRSAIIFGGVGIQPQIAQLRRGVD 124
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+ TPGR+ DH+ + +DLS ++ VLDEAD ML MGF+ D+ +L ++ N+ Q+LL
Sbjct: 125 IVVATPGRLLDHVGQRTLDLSGIEILVLDEADRMLDMGFIHDIRRVL-RLLPTNR-QSLL 182
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT + ++ ++ L+ D TI + + A+ V +V P + + +++ +I
Sbjct: 183 FSATYSNEIEQLANGLLR-DPVTIAVA--RRNTAAEQVSQLVHPVAKERKRELLSHLI-- 237
Query: 360 YSSGG-RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+S G + ++FT TK A++L D L A A+HG+ QS R LAGF+ G LV
Sbjct: 238 HSQGWDQVLVFTRTKHGANRLTDQLVRDGIAAAAIHGNKSQSARTNALAGFKRGAVRALV 297
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458
AT++AARGLDI+ + ++ E P E Y+HR GRTGRAG A
Sbjct: 298 ATDIAARGLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAGSAGA 341
>gi|304390841|ref|ZP_07372793.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|315656383|ref|ZP_07909272.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|304325724|gb|EFL92970.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|315492942|gb|EFU82544.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 525
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 200/355 (56%), Gaps = 7/355 (1%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
E+ + F + + L+ +GI FPIQA+T + L+ D++G+A+TG GKTL F
Sbjct: 21 EANQDKTFADFDVEPEIVAALRDQGIIHPFPIQALTLPVALNRQDIIGQAKTGTGKTLGF 80
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+PIL + + + P LV+LPTRELAKQV + +YG
Sbjct: 81 AIPILHDIIGPGDEGWDEIPDSGFPQALVILPTRELAKQVAAEIRAAATHRVARIIEIYG 140
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G + +Q L+KG++VV+GTPGR+ D + +G + L ++ V+DEADEML MGF+ DVE
Sbjct: 141 GVGFDSQVEALRKGVEVVVGTPGRLIDLMNQGTLKLGRIRTLVMDEADEMLDMGFLPDVE 200
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
++ ++ + T+LFSAT+P V ++ +++ + + V+ +V
Sbjct: 201 KLISQI--PPRRHTMLFSATMPGPVVALARRYMYQPTHIRATDPTDSSQTVRQVKQVVYR 258
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQRE 399
S +++VI I++ + G TIIFT TK + +L+D L A+HGD+ Q+ RE
Sbjct: 259 VHSLNKTEVIARILQARNRG-LTIIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARE 317
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
L FR GK LVAT+VAARG+D++DV +I E P D + YIHR GRT RAG
Sbjct: 318 RALRAFRHGKVDVLVATDVAARGIDVDDVTHVINYECPEDDKTYIHRIGRTARAG 372
>gi|239816654|ref|YP_002945564.1| DEAD/DEAH box helicase domain-containing protein [Variovorax
paradoxus S110]
gi|239803231|gb|ACS20298.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
Length = 601
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 201/346 (58%), Gaps = 14/346 (4%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
+++ + + + G ++ PIQA VL+G DL+G A+TG GKT AF LP+L L+
Sbjct: 6 LKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPMLHKLST 65
Query: 174 GPTKASKKTGYG-RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
G + +K G G RA LVL PTRELA QV E YG + L S ++GG + Q
Sbjct: 66 GASATNKFGGIGIRA---LVLTPTRELAAQVEESVRTYGKYLELDSTVIFGGVGMNPQIS 122
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
KLKKG+D+++ TPGR+ D ++G +DLS ++ +LDEAD ML MGF+ DV+ IL V
Sbjct: 123 KLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALV--P 180
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ Q+LLFSAT ++ ++ LK+ + N ++ T V H P + +
Sbjct: 181 KEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIH---PVGRGKKKAL 237
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
+ II + + ++FT TK A+ +A+ L A ALHG+ QS R LAGF+SG
Sbjct: 238 LAHIIN-ENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSG 296
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT++AARG+DI+++ ++ E P E Y+HR GRTGRAG
Sbjct: 297 DIRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAG 342
>gi|271499180|ref|YP_003332205.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
Ech586]
gi|270342735|gb|ACZ75500.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
Length = 624
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 204/362 (56%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQA +L+G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNI---- 68
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
KA K AP +LVL PTRELA QV E + + + G+ LYGG Y Q L
Sbjct: 69 -KADLK-----APQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G VV+GTPGR+ DH++RG +DLS+L VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 123 RQGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+ ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMNDPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTVYGMRKNEALIRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD++ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|423122287|ref|ZP_17109971.1| cold-shock DEAD box protein A [Klebsiella oxytoca 10-5246]
gi|376392613|gb|EHT05276.1| cold-shock DEAD box protein A [Klebsiella oxytoca 10-5246]
Length = 655
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L G D++G A+TG GKT AF LP+L +L P
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLD--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+AP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 71 EL--------KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|402590521|gb|EJW84451.1| Ddx5 protein [Wuchereria bancrofti]
Length = 522
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 196/327 (59%), Gaps = 21/327 (6%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQ++++ + L G D+V A+TG GKT AF+LP + + P + G+ ++PSVLVLL
Sbjct: 123 IQSISWPIALSGRDMVSIAKTGSGKTFAFILPAIVHTISQPPR-----GHQKSPSVLVLL 177
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA+QV E Y L+ CL+GGAP AQ L++G+D++I TPGR+ D +E
Sbjct: 178 PTRELAQQVEEVAKDYCRVTDLSITCLFGGAPKAAQARDLERGVDIIIATPGRLMDFLEI 237
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G DL + VLDEAD ML MGF + ++ ++ QTL+FSAT P V+ ++
Sbjct: 238 GKTDLRRCTYLVLDEADRMLDMGFEPQIRKVVSQIRPDR--QTLMFSATWPKDVRKLAMD 295
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ----VIPDIIRCYSSGGRTIIFT 370
FL +D ++ VG+ ++ A+ N+ IV S + Q ++ DI+ +TIIF
Sbjct: 296 FL-TDAAHLN-VGSLELSANHNITQIVEIIDESNKQQRLMAILSDIMN--KEDCKTIIFV 351
Query: 371 ETKESASQLA-----DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425
ETK A L D P A +HGD QS+R+ L+ FRSGK L+AT+VAARGLD+
Sbjct: 352 ETKRKADDLTRWMRRDGWP-ALCIHGDKGQSERDWALSEFRSGKTPILLATDVAARGLDV 410
Query: 426 NDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+D++ +I + + E Y+HR GRTGR
Sbjct: 411 DDIKYVINFDYSNNSEDYVHRIGRTGR 437
>gi|254443756|ref|ZP_05057232.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
gi|198258064|gb|EDY82372.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
Length = 603
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/345 (41%), Positives = 198/345 (57%), Gaps = 22/345 (6%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+++ L G E+ PIQA +VL G DL+G+A+TG GKT AF LP+L L P
Sbjct: 19 LSQPVQDALVEIGYETPSPIQARAIPVVLSGRDLIGQAQTGTGKTAAFALPLLSML--DP 76
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKL 234
+ P ++L PTRELA QV E YG V L +YGG + Q L
Sbjct: 77 NED--------GPKAIILAPTRELALQVSEAISNYGRKVKRLEVTAIYGGTDFTRQFRAL 128
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+ +V+GTPGRI DHI RG++DLS + VLDEADEMLRMGF+EDVE IL ++
Sbjct: 129 DRKPAIVVGTPGRIMDHIRRGSLDLSRISHVVLDEADEMLRMGFIEDVEWILEHT--PSE 186
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS-SARSQVI 353
QT LFSAT+P + I+ K LK + + N ST VR + C+ + +V+
Sbjct: 187 RQTALFSATMPPRIAAIAKKQLK--EPVTVAIKNTTATVST-VRQRFIKCNGMRHKIEVL 243
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSGK 409
+++ I+FT TK +AS +A+ L + A+HGDI Q++RE ++ + GK
Sbjct: 244 GNLLETEERDA-AIVFTRTKSAASMIAEELAASGHAVEAIHGDITQNKREKAVSLLKEGK 302
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LVAT+VAARGLD++ + + + P D E YIHR GR GRAG
Sbjct: 303 IDILVATDVAARGLDVDRISHVFNFDIPDDAEPYIHRIGRAGRAG 347
>gi|159901480|ref|YP_001547727.1| DEAD/DEAH box helicase [Herpetosiphon aurantiacus DSM 785]
gi|159894519|gb|ABX07599.1| DEAD/DEAH box helicase domain protein [Herpetosiphon aurantiacus
DSM 785]
Length = 584
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/332 (40%), Positives = 193/332 (58%), Gaps = 22/332 (6%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E PIQA + ++L G+D++ +A+TG GKT AF LP +E + K G
Sbjct: 21 GYEEPTPIQAQSIGLMLSGNDIIAQAQTGTGKTAAFSLPTIERID------PKAMGV--- 71
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
L+L PTRELA QV + YG + + + +YGG P Q LK+G+++VIGTPGR
Sbjct: 72 -QALILTPTRELAVQVSDAISAYGKYLNIRALPVYGGQPIDRQLRALKRGVNIVIGTPGR 130
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ DH+ERG +DLS+++ VLDEADEML MGFV+D+E IL + QT L+SAT+P
Sbjct: 131 LMDHMERGTLDLSTVRTVVLDEADEMLNMGFVDDIEYILERA--PKDRQTALYSATMPDE 188
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKAST-NVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
+ ++ K+L+S + +V E+ + + +R + + + +V+ I+
Sbjct: 189 IARLARKYLRSPQ----MVTIEREQLTVPQIRQVYYEIGARDKFEVLTRILDLEMPTS-A 243
Query: 367 IIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
IIF TK +L + L GA LHGD+ Q+ R+ + FR + LVAT+VAARG
Sbjct: 244 IIFCRTKAMVDELGEKLLARGYGAELLHGDLSQAMRDRVMKRFREEQVEILVATDVAARG 303
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
LDI V +I + P D EAY+HR GRTGRAG
Sbjct: 304 LDIEHVSHVINYDIPLDPEAYVHRIGRTGRAG 335
>gi|150864373|ref|XP_001383156.2| ATP-dependent RNA helicase of DEAD box family [Scheffersomyces
stipitis CBS 6054]
gi|149385629|gb|ABN65127.2| ATP-dependent RNA helicase of DEAD box family, partial
[Scheffersomyces stipitis CBS 6054]
Length = 616
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 202/362 (55%), Gaps = 20/362 (5%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLF----PIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P+ ++ F + PL E L S F P+Q + +V G DL+ A+TG GKT F
Sbjct: 133 PDPITSF-TAPPLDELLVENITMSRFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGF 191
Query: 164 VLPIL-ESLTNGPTKASKKTG----YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
+ P+L ES NGP ++ TG + P++LV+ PTREL Q++++ + +
Sbjct: 192 LFPVLSESYINGPAPIAESTGAFSSHKVHPTILVMAPTRELVSQIYDEAKKFAYRSWVKP 251
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
+YGGA Q L KG D+++ TPGR+KD +ERG + L+++K+ VLDEAD ML MGF
Sbjct: 252 AVVYGGADIGQQIRNLDKGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGF 311
Query: 279 VEDVELILGKVE--DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
+ I+ + + D QTL+FSAT P+ ++ ++ FLK I L S N
Sbjct: 312 EPQIRHIVQECDMPDVQDRQTLMFSATFPTDIQMLARDFLKD---YIFLSVGRVGSTSEN 368
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGD 392
+ +L + V+ D++ G TIIFTETK A LAD L A A+HGD
Sbjct: 369 ITQKILYVEDEEKKSVLLDLLSA-GDAGLTIIFTETKRMADNLADFLYDQGFPATAIHGD 427
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
Q +RE LA F+SG LVAT VAARGLDI +V +I + P D++ Y+HR GRTGR
Sbjct: 428 RSQYEREKALAAFKSGAAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGR 487
Query: 453 AG 454
AG
Sbjct: 488 AG 489
>gi|283769405|ref|ZP_06342304.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
gi|283104062|gb|EFC05446.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
Length = 425
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 199/347 (57%), Gaps = 19/347 (5%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + PL + L + PIQ ++L+GSDL+ A+TG GKT F LPIL SL+
Sbjct: 6 FNLRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPILNSLSK 65
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+K RA L+L PTRELA Q+ E+ ++G + L +CC+YGG+P Q
Sbjct: 66 ------EKNHSIRA---LILTPTRELATQIFENIKMFGRYMHLRACCVYGGSPAAPQLKA 116
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
++ G D++I TPGR+ D++ G I L ++F VLDEAD ML MGF+ DV I+ ++ N
Sbjct: 117 IRSGCDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQI--PN 174
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
T LFSAT+P ++ ++ LK+ K+ + EK AST + ++ S++ +V+
Sbjct: 175 DRITALFSATMPKEIQELARDILKNPKEV--RIEAEKFTAST-IDQYLIYTEKSSKKKVL 231
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
+++ S +TI+FT TK A +L L +HGD Q QR L FR+ +
Sbjct: 232 VNLLNT-ESIKKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRTNQ 290
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
L+AT+VAARG+DI D+ +I + P D+E Y+HR GRTGRA E
Sbjct: 291 IRILIATDVAARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQE 337
>gi|157377161|ref|YP_001475761.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157319535|gb|ABV38633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 610
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 152/446 (34%), Positives = 231/446 (51%), Gaps = 53/446 (11%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
PL L G E PIQA + D ++ G D++G+A+TG GKT AF LP+L S+
Sbjct: 16 PLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNSIDPNTN-- 73
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKG 237
AP +LVL PTRELA QV E F Y + GL +YGG H Q L++G
Sbjct: 74 --------APQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQSMHQQLNALRRG 125
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+++GTPGR+ DH+ RG + L SLK VLDEADEML+MGF++D+E IL + Q
Sbjct: 126 PQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHT--PKQRQL 183
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT+P +K ++ K+L S+ + + + R + + S + + + ++
Sbjct: 184 ALFSATMPEQIKRVANKYL-SEPVHVKIAATTTTVETIEQRFVQV--SQHNKLEALVRVL 240
Query: 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G IIF T+ S +LA+ L + LHGD+ Q RE + + G +
Sbjct: 241 EVEKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGTLDII 299
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG------------------- 454
+AT+VAARGLD+ + ++ + P D EAY+HR GRTGRAG
Sbjct: 300 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRT 359
Query: 455 VEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAK--------ALAKAVGYTEIKS 506
+E A T +++S +P+ ++ E L+ G +E++AK A+A+ E+ +
Sbjct: 360 IERA-TKSRISPMDVPSPETVTERRLSRLGEQVSEIIAKDSLDFMKGAVAQLCQQLEVDT 418
Query: 507 RSLLSSLEDHVTVVLEAGKPIYTPSF 532
L ++L V + +P+ PS
Sbjct: 419 DILAAALLQQV----QKDRPLQLPSI 440
>gi|255726050|ref|XP_002547951.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
gi|240133875|gb|EER33430.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
Length = 665
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 202/362 (55%), Gaps = 20/362 (5%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLF----PIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P ++ F + PL E L S F P+Q + +V G DL+ A+TG GKT F
Sbjct: 182 PEPITAF-TAPPLDELLVENITLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGF 240
Query: 164 VLPIL-ESLTNGPTKASKKTG----YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
+ P+L ES NGP + TG + P++LV+ PTREL Q++E+ + +
Sbjct: 241 LFPVLSESYLNGPAPVPETTGAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRSWVRP 300
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C +YGGA Q L +G D+++ TPGR+KD +ERG + L+++K+ VLDEAD ML MGF
Sbjct: 301 CVVYGGADIGQQMRNLDRGCDLLVATPGRLKDLLERGKVSLANIKYLVLDEADRMLDMGF 360
Query: 279 VEDVELILGKVE--DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN 336
+ I+ + + + QTL+FSAT P ++ ++ FLK + L S N
Sbjct: 361 EPQIRHIVEECDMPEVTDRQTLMFSATFPRDIQMLARDFLKD---YVFLSVGRVGSTSEN 417
Query: 337 VRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGD 392
+ +L + VI D++ + G TI+FTETK A QLAD L A A+HGD
Sbjct: 418 ITQKILYVEDEDKKSVILDLLAA-NENGLTIVFTETKRMADQLADFLYDQGFPATAIHGD 476
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
Q +RE LA F++G LVAT VAARGLDI +V +I + P D++ Y+HR GRTGR
Sbjct: 477 RSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVGHVINFDLPSDIDDYVHRIGRTGR 536
Query: 453 AG 454
AG
Sbjct: 537 AG 538
>gi|113971754|ref|YP_735547.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113886438|gb|ABI40490.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 622
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 149/418 (35%), Positives = 218/418 (52%), Gaps = 36/418 (8%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L L G E PIQ+ + D ++ G D++G+A+TG GKT AF LP+L +T+
Sbjct: 13 LSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQA 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
P +LVL PTRELA QV E F Y + G +YGG H Q L
Sbjct: 73 V-----------PQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNAL 121
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K+G V++GTPGR+ DH+ RG + L +L+ VLDEADEML+MGF++D+E IL +
Sbjct: 122 KRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQR- 180
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P +K ++ K LK D I + + S R + + S + + +
Sbjct: 181 -QLALFSATMPEQIKRVANKHLK-DATNISIAASHTTVDSIEQRFVQV--SQHNKLEALV 236
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
++ ++ G IIF T+ S +LA+ L + LHGD+ Q RE + +SGK
Sbjct: 237 RVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKL 295
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG-------------VEA 457
L+AT+VAARGLD+ + ++ + P D EAY+HR GRTGRAG +
Sbjct: 296 DILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRM 355
Query: 458 AETITQVSDSVIPAFKSAAEELLNNSGLS-AAELLAKALAKAVGYTEIKSRSLLSSLE 514
TI + ++S I K + E + LS E LA+ + + + + L LE
Sbjct: 356 LRTIERATNSRISPMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLE 413
>gi|251791029|ref|YP_003005750.1| ATP-dependent RNA helicase DeaD [Dickeya zeae Ech1591]
gi|247539650|gb|ACT08271.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
Length = 624
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 204/362 (56%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQA +L+G D++G A+TG GKT AF LP+L ++
Sbjct: 13 LSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNI---- 68
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
KA K AP +LVL PTRELA QV E + + + G+ LYGG Y Q L
Sbjct: 69 -KADLK-----APQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G VV+GTPGR+ DH++RG +DLS+L VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 123 RQGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+ ++ ++++S R P
Sbjct: 182 -QTALFSATMPEAIRRITRRFMNDPQEV-------RIQSSVTTR---------------P 218
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 219 DISQSYWTVYGMRKNEALIRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD 278
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD++ + L++ + P D E+Y+HR GRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 453 AG 454
AG
Sbjct: 339 AG 340
>gi|386361220|ref|YP_006059465.1| DNA/RNA helicase [Thermus thermophilus JL-18]
gi|383510247|gb|AFH39679.1| DNA/RNA helicase, superfamily II [Thermus thermophilus JL-18]
Length = 510
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/337 (41%), Positives = 192/337 (56%), Gaps = 21/337 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + E L +G+ + PIQA + L+G DL+G+ARTG GKTLAF LPI E L
Sbjct: 6 FPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAP 65
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
+ GR P LVL PTRELA QV + A L +YGG Y Q+
Sbjct: 66 SQER-------GRKPRALVLAPTRELALQVASELASV--ATHLKVVAVYGGTGYGKQKEA 116
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L +G D V+ TPGR D++ +G +DLS ++ VLDEADEML MGF E+VE +L +
Sbjct: 117 LLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR 176
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QTLLFSATLPSW K ++ +++K + I+++ +E + +P R +V+
Sbjct: 177 --QTLLFSATLPSWAKRLAERYMK-NPVLINVIKDEPVTYEEEA----VPAPVRGRLEVL 229
Query: 354 PDIIRCYSSGGRTIIFT----ETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGK 409
D++ +S R ++FT ET+E A L L A+A+HGD+ Q +RE L FR G+
Sbjct: 230 SDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQAIHGDLSQGERERVLGAFRQGE 288
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHR 446
LVAT+VAARGLDI V L++ P EAY HR
Sbjct: 289 VRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHR 325
>gi|383825179|ref|ZP_09980330.1| putative ATP-dependent RNA helicase [Mycobacterium xenopi
RIVM700367]
gi|383335581|gb|EID14011.1| putative ATP-dependent RNA helicase [Mycobacterium xenopi
RIVM700367]
Length = 455
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/341 (39%), Positives = 194/341 (56%), Gaps = 21/341 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
+ +GIE F IQ +T + L G D++G+ARTG GKTLAF +P+L+ +T + G
Sbjct: 1 MTDQGIERPFAIQELTLPLALAGEDVIGQARTGMGKTLAFGVPLLQRITT-------EAG 53
Query: 184 YGRAPSVLVLLPTRELAKQVHED------FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKG 237
P LV++PTREL QV +D + + GL+ +YGG PY Q L+ G
Sbjct: 54 LSGNPRALVVVPTRELCLQVSDDLAAAAKYLIADHGRGLSVVSIYGGRPYEPQIQALRAG 113
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ DVE IL ++ D Q+
Sbjct: 114 ADVVVGTPGRLLDLAQQGHLQLGKLSVLVLDEADEMLDLGFLPDVERILRQIPDDR--QS 171
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
+LFSAT+P+ + ++ F+ I V + + +++ ++
Sbjct: 172 MLFSATMPNPIIRLARTFMHQPTH-IRAEAPHASAVHDATDQFVYRAHALDKVELVSRVL 230
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTL 413
+ G T+IFT TK +A ++AD L G A+HGD+ Q RE L FRSG L
Sbjct: 231 QARDRGA-TMIFTRTKRTAQKVADELAGRGFAVGAVHGDLGQVAREKALKAFRSGAIDVL 289
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
VAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG
Sbjct: 290 VATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAG 330
>gi|386842350|ref|YP_006247408.1| ATP-dependent RNA helicase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374102651|gb|AEY91535.1| ATP-dependent RNA helicase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451795643|gb|AGF65692.1| ATP-dependent RNA helicase [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 992
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 206/372 (55%), Gaps = 22/372 (5%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI + FPIQ MT + L G+D++G+A+TG GKTL F LP+LE +T A +
Sbjct: 50 EALEAVGITTPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVT---VPADVE 106
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G AP LV++PTREL QV D G + +YGG Y Q LK
Sbjct: 107 AGRAAPEALTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVVAIYGGRAYEPQVEALK 166
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DVV+GTPGR+ D + +DL +K VLDEADEML +GF+ DVE I+ + K
Sbjct: 167 KGVDVVVGTPGRLLDLAGQKKLDLKHVKCLVLDEADEMLDLGFLPDVEKIVNML--PAKR 224
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ +++ N++ V + + ++
Sbjct: 225 QTMLFSATMPGAVIGLARRYMSRPTHIRATAPDDEGATVANIKQFVYRAHNMDKPEMAAR 284
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
I++ G +IF TK +A+ +A+ L + A+HGD+ Q RE L FR+GK
Sbjct: 285 ILQAEGR-GLAMIFCRTKRTAADIAEQLQRRGFASGAVHGDLGQGAREQALRAFRNGKVD 343
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPA 471
LV T+VAARG+D+ V +I + P D + Y+HR GRTGRAG + IT V IP
Sbjct: 344 VLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGT-AITFVDWDDIPR 402
Query: 472 FKSAAEELLNNS 483
+ +L+N +
Sbjct: 403 W-----QLINKA 409
>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
Length = 534
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/352 (38%), Positives = 194/352 (55%), Gaps = 20/352 (5%)
Query: 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP 166
+P+ + +S L L+ G E P+Q ++L G D + +A TG GKT AF LP
Sbjct: 10 NPSGFAALGLSPALLAALRDVGFEQPMPVQTEAIPVLLSGRDAIVQAHTGTGKTAAFALP 69
Query: 167 ILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226
IL+ L YG P LVL PTRELA QV E G + LYGG P
Sbjct: 70 ILQGLVP----------YGHGPQALVLTPTRELAIQVAEAIHRLGRYLDARVLALYGGQP 119
Query: 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286
Q L+ +DV++GTPGRI DH+ R + L ++ +LDEADEML MGF+EDVE IL
Sbjct: 120 IERQLRALRHPVDVIVGTPGRIMDHLRRETLRLDQVRVVILDEADEMLDMGFIEDVEWIL 179
Query: 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346
V + QT LFSAT+P ++ ++ ++L++ + + + + ++ V ++
Sbjct: 180 EHV--PRERQTALFSATIPPRIRQLTQRYLRA---PVTIAIHPERVTVPSIAQTVYEVAA 234
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402
A+ + + I+ Y + IIF TK A +LA L A A+HGD+ Q+ R+ +
Sbjct: 235 HAKLEALSRIL-DYEAPTSAIIFVRTKSGADELAHKLQSLGYAAEAIHGDLSQAMRDRAM 293
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
FR+G+ L+AT+VAARGLDI V +I + P D E+Y+HR GRTGRAG
Sbjct: 294 QRFRAGQVDLLIATDVAARGLDIPAVSHVINFDIPSDPESYVHRIGRTGRAG 345
>gi|429203010|ref|ZP_19194366.1| DEAD/DEAH box helicase [Streptomyces ipomoeae 91-03]
gi|428661429|gb|EKX60929.1| DEAD/DEAH box helicase [Streptomyces ipomoeae 91-03]
Length = 565
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 159/457 (34%), Positives = 234/457 (51%), Gaps = 37/457 (8%)
Query: 35 TEKSSDKKKSKKKESSKKRKESEIEEEEERSETSSELGEPVNLKSEKEKKKKKKAKVEPE 94
T++SS + ++S + +E+ + R T G+ + ++ EP
Sbjct: 25 TDRSSTRSAGSARDSRSRTQETG--RQNPRPTTGRRNGQGSRSAARPQEFTLPVTLTEPL 82
Query: 95 AGVEEQERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRAR 154
VE + + PL+ L ++G+ FPIQA T L G D++GRAR
Sbjct: 83 PAVE-----------TFAELDLPAPLQAALHAQGVTVPFPIQAATLPNALAGRDVLGRAR 131
Query: 155 TGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV 214
TG GKTLAF LP+L L NG + R P LVL+PTRELA+QV + Y A+
Sbjct: 132 TGSGKTLAFGLPVLARL-NG------QRAQPRQPLALVLVPTRELAQQVTDALTPYARAL 184
Query: 215 GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274
L + GG Q L+ G +VV+ TPGR+KD IERG+ L + VLDEAD+M
Sbjct: 185 RLRLATVVGGMGIGRQASALRGGAEVVVATPGRLKDLIERGDCRLDQVAVTVLDEADQMA 244
Query: 275 RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS 334
MGF+ V +L +V Q LLFSATL + + ++L + V + A
Sbjct: 245 DMGFMPQVTALLDQV--GPDGQRLLFSATLDRNIDLLVRRYLHD--PVVHSV-DPSAGAV 299
Query: 335 TNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALH 390
+ + H +L + + +I + GR I+F +TK +A +LA L A ALH
Sbjct: 300 STMEHHLLHVGDADKHTTATEI---AARDGRVIMFLDTKHAADRLAKHLLSVGVRASALH 356
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
G Q QR TLA F+ G LVATNVAARG+ ++D+ L++ +PP D + Y+HR GRT
Sbjct: 357 GGKSQPQRNRTLAQFKDGHVTVLVATNVAARGIHVDDLDLVVNVDPPGDHKDYLHRGGRT 416
Query: 451 GRAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSA 487
RAG E+ +T V+P + A + L+ ++G++A
Sbjct: 417 ARAG-ESGTVVTL----VLPHQRRAVDRLMADAGIAA 448
>gi|50292931|ref|XP_448898.1| hypothetical protein [Candida glabrata CBS 138]
gi|74664283|sp|Q8TFK8.1|DED1_CANGA RecName: Full=ATP-dependent RNA helicase DED1
gi|20086311|gb|AAM08102.1| DED1p [Candida glabrata]
gi|49528211|emb|CAG61868.1| unnamed protein product [Candida glabrata]
Length = 617
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 202/365 (55%), Gaps = 26/365 (7%)
Query: 108 PNAVSRFRISVPLR----EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P A++ F S PL E +K P+Q + +V G DL+ A+TG GKT F
Sbjct: 141 PEAITEF-TSPPLDSLLLENIKLARFTKPTPVQKYSVPIVSKGRDLMACAQTGSGKTGGF 199
Query: 164 VLPIL-ESLTNGPTKASKKTGYGRA----PSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
+ P+L ES GP + + GY P+ +V+ PTRELA Q+ ++ + +
Sbjct: 200 LFPVLSESFLTGPAEKAANDGYSYQRKAFPTAVVMAPTRELATQIFDEAKKFCYRSWVKP 259
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C +YGGAP Q ++ G D+++ TPGR+ D +ERG + LS++K+ VLDEAD ML MGF
Sbjct: 260 CVVYGGAPIGNQMREMDHGCDLLVATPGRLNDLLERGKVSLSNVKYLVLDEADRMLDMGF 319
Query: 279 VEDVELILGKVEDAN-----KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
+ I VED + + QTL+FSAT P ++H++ FL I L
Sbjct: 320 EPQIRHI---VEDCDMPPTGERQTLMFSATFPHDIQHLARDFLHD---YIFLSVGRVGST 373
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARAL 389
S N+ +L + ++ + D++ S+ T+IF ETK A QL D L A A+
Sbjct: 374 SENITQRILYVENRDKNSALLDLLAA-SNDNLTLIFVETKRMADQLTDFLIMQNFSATAI 432
Query: 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 449
HGD Q++RE LA FRSG+ LVAT VAARGLDI +V +I + P DV+ Y+HR GR
Sbjct: 433 HGDRSQAERERALAAFRSGRANILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGR 492
Query: 450 TGRAG 454
TGRAG
Sbjct: 493 TGRAG 497
>gi|443673677|ref|ZP_21138733.1| putative DEAD/DEAH box helicase [Rhodococcus sp. AW25M09]
gi|443413744|emb|CCQ17071.1| putative DEAD/DEAH box helicase [Rhodococcus sp. AW25M09]
Length = 507
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 193/340 (56%), Gaps = 16/340 (4%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GIE F IQ +T + + G DL+G+ARTG GKT F +P+L L T S T
Sbjct: 9 LSEMGIERTFAIQELTLPLAIAGDDLIGQARTGMGKTFGFGVPLLHRLA---TDNSGTTP 65
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFD----VYGGAVG-LTSCCLYGGAPYHAQEFKLKKGI 238
P L+++PTREL QV D + GA G + +YGG PY AQ L+ G+
Sbjct: 66 LDGTPRALIIVPTRELCVQVSSDLENASKYLSGANGPVKVLSIYGGRPYEAQISALQNGV 125
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
DVV+GTPGR+ D ++ ++ L + VLDEADEML +GF+ D+E ILG V D K QT+
Sbjct: 126 DVVVGTPGRLLDLAKQNHLILGKVGVLVLDEADEMLDLGFLPDIERILGMVPD--KRQTM 183
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSAT+P + ++ FL + I E V + + +++ +++
Sbjct: 184 LFSATMPGPIITLARTFL-TQPTHIRAEEAESSAVHDRTAQHVYRAHALDKVEMVAKVLK 242
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
G T++FT TK +A ++AD L A+HGD+ Q QRE L FR+GK LV
Sbjct: 243 ADGRGA-TMVFTRTKRTAQKVADELAERGYSVGAVHGDLGQVQREKALKAFRTGKIDVLV 301
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
AT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG
Sbjct: 302 ATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAG 341
>gi|404424588|ref|ZP_11006154.1| ATP-dependent RNA helicase, partial [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403650868|gb|EJZ06055.1| ATP-dependent RNA helicase, partial [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 444
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/360 (38%), Positives = 202/360 (56%), Gaps = 20/360 (5%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGPTKA 178
L L + G+ + FPIQA T L G D++GR RTG GKT AF+LP++ L T+G +A
Sbjct: 12 LVSALAANGVHNPFPIQAATLPDSLTGRDVLGRGRTGSGKTYAFLLPLVARLATSGTPRA 71
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
K+ P L+L PTREL Q+ A GL S ++GG + Q LK+G+
Sbjct: 72 PKR------PRALILAPTRELVTQIEASLTPLAAATGLRSINIFGGVGPNPQIAALKQGV 125
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
D+VI PGR++DH++ G+ DLSS++ VLDEAD M +GF+ V+ +L + Q L
Sbjct: 126 DIVIACPGRLEDHVKSGHADLSSVEITVLDEADHMADLGFLPGVKRLLDRTP--KNCQRL 183
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSATL + V + ++L + V + + + V H VL +S R V+ D+
Sbjct: 184 LFSATLDAGVDVLVDRYLH--DPVVHSVDSAQSPVAAMVHH-VLHVDNSTRISVVADL-- 238
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
++ GRTI+F TK A L L A LHG++ Q+ R L F G LV
Sbjct: 239 -AAAPGRTIVFARTKYGAKNLTRQLNSRGIAAVELHGNLSQNARTRNLTAFSDGSAGVLV 297
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS 474
AT++AARG+ ++DV L++ +PP + +AY+HRSGRT RAG E +T + D+ + +S
Sbjct: 298 ATDIAARGIHVDDVSLVVHADPPVEHKAYLHRSGRTARAGNE-GTVVTLMHDAQVSDVRS 356
>gi|160380616|sp|A6ZUA1.1|DBP3_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP3; AltName: Full=DEAD
box protein 3; AltName: Full=Helicase CA3
gi|151943729|gb|EDN62039.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
Length = 523
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 195/329 (59%), Gaps = 19/329 (5%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA+ + +L G D+VG A TG GKT AF +P + L N K R VLV+
Sbjct: 137 PIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK--------RGIQVLVI 188
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA Q++++ V VG+ CC+YGG P Q +LKK VV+ TPGR+ D ++
Sbjct: 189 SPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQ 247
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G++DLS + + VLDEAD ML GF ED++ I+ + DA+K QTL+F+AT P V+ +++
Sbjct: 248 EGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRET-DASKRQTLMFTATWPKEVRELAS 306
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR----TIIF 369
F+ + K + + +++ A+ + IV + + + ++++ Y SG + +IF
Sbjct: 307 TFMNNPIK-VSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIF 365
Query: 370 TETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425
K+ A+++ L A+HGD+ Q QR L F+SGK L+AT+VAARGLDI
Sbjct: 366 ALYKKEAARVERNLKYNGYNIAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDI 425
Query: 426 NDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+V+ +I P VE Y+HR GRTGRAG
Sbjct: 426 PNVKTVINLTFPLTVEDYVHRIGRTGRAG 454
>gi|440694929|ref|ZP_20877502.1| putative ATP-dependent RNA helicase DeaD [Streptomyces
turgidiscabies Car8]
gi|440282994|gb|ELP70363.1| putative ATP-dependent RNA helicase DeaD [Streptomyces
turgidiscabies Car8]
Length = 1034
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/362 (37%), Positives = 205/362 (56%), Gaps = 17/362 (4%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L++ GI + FPIQ MT + L G+D++G+A+TG GKTL F LP+LE +T A +
Sbjct: 49 EALEAVGIITPFPIQEMTLPVALTGTDVIGQAKTGTGKTLGFGLPLLERVT---VPADVE 105
Query: 182 TGYGR------APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
G + AP LV++PTREL +QV D G + +YGG Y Q LK
Sbjct: 106 AGRAKPEQLTEAPQALVVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALK 165
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG+DV++GTPGR+ D + ++LS ++ VLDEADEML +GF+ DVE I+ + +
Sbjct: 166 KGVDVIVGTPGRLLDLAGQKKLNLSHIRALVLDEADEMLDLGFLPDVEKIMNML--PARR 223
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT+P V ++ +++ +++ K N V + + +++
Sbjct: 224 QTMLFSATMPGAVIGLARRYMSQPTHIRAAAPDDEGKTVANTAQYVYRAHNMDKPELVAR 283
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
I++ G ++F TK +A+ LAD L + A+HGD+ Q RE L FR+GK
Sbjct: 284 ILQA-DGRGLAMVFCRTKRTAADLADQLAQRGFASGAVHGDLGQGAREQALRAFRNGKVD 342
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPA 471
LV T+VAARG+D+ V +I + P + + Y+HR GRTGRAG + IT V IP
Sbjct: 343 VLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGI-AITLVDWDDIPR 401
Query: 472 FK 473
++
Sbjct: 402 WQ 403
>gi|418246652|ref|ZP_12873046.1| hypothetical protein KIQ_14222 [Corynebacterium glutamicum ATCC
14067]
gi|354509267|gb|EHE82202.1| hypothetical protein KIQ_14222 [Corynebacterium glutamicum ATCC
14067]
Length = 424
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 201/357 (56%), Gaps = 17/357 (4%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
ES P + ++V + + L++ GI F IQ T + LDG D +G+ARTG GKT F
Sbjct: 4 ESPRPT-FTELGVAVEITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGF 62
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+P+L+ + + A P LV++PTRELA QV +D + L YG
Sbjct: 63 GVPLLDRVFDSADVAETDG----TPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYG 118
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G PY Q LK G+DVV+GTPGR+ D +RG + L + VLDEADEML +GF+ D+E
Sbjct: 119 GTPYEEQIDALKVGVDVVVGTPGRLLDLHKRGALSLDKVAILVLDEADEMLDLGFLPDIE 178
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIV 341
IL + ++ QT+LFSAT+P + ++ FL K + + ++T+ R +V
Sbjct: 179 KILRAL--THQHQTMLFSATMPGAILTLARSFL---NKPVHIRAETSDASATHKTTRQVV 233
Query: 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQ 397
+ + I++ G+TIIF TK +A+Q+A+ L ++HGD+ Q
Sbjct: 234 FQAHKMDKEAITAKILQAKDR-GKTIIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPA 292
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RE +L FR+GK LVAT+VAARG+D++DV +I + P D Y+HR GRTGRAG
Sbjct: 293 REKSLNAFRTGKIDILVATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAG 349
>gi|300721544|ref|YP_003710819.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
nematophila ATCC 19061]
gi|297628036|emb|CBJ88585.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
nematophila ATCC 19061]
Length = 649
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 204/364 (56%), Gaps = 61/364 (16%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQ +L+G D++G A+TG GKT AF LP+L ++ N
Sbjct: 14 LSAPILSALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFTLPLLHNI-NAE 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
KA P +LVL PTRELA QV E DF + +V + LYGG Y Q
Sbjct: 73 LKA---------PQILVLAPTRELAVQVAEACSDFSKHMRSVNV--VALYGGQRYDVQLR 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G +V+GTPGR+ DH++RG +DLS+LK VLDEADEMLRMGF+EDVE I+ ++
Sbjct: 122 ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAE 181
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+ ++ ++++S R
Sbjct: 182 H--QTALFSATMPEAIRRITRRFMNDPQEV-------RIQSSVTNR-------------- 218
Query: 353 IPDIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y S G R IIF TK + ++A+ L + AL+
Sbjct: 219 -PDISQSYWSVYGVRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN 277
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ Q+ RE TL ++G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRT
Sbjct: 278 GDMNQTLREQTLERLKNGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRT 337
Query: 451 GRAG 454
GRAG
Sbjct: 338 GRAG 341
>gi|402814213|ref|ZP_10863807.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
gi|402508060|gb|EJW18581.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
Length = 487
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/341 (41%), Positives = 199/341 (58%), Gaps = 27/341 (7%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L GI P+QA T +VL G D+V +A+TG GKTLAF+LPI++ + G T
Sbjct: 5 LNQNGIAVPTPVQAETIPVVLSGEDVVSQAQTGTGKTLAFLLPIIQRIDAGSTHVQ---- 60
Query: 184 YGRAPSVLVLLPTRELAKQVH-EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
L++ PTRELA Q+ E + G G+ +YGG Q KL+ G +VI
Sbjct: 61 ------ALIVAPTRELALQITAEAKKLIGAYEGVNVLAVYGGQDVERQMRKLQGGRQLVI 114
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ DH+ RG I LS +K VLDEAD+ML MGF+ +VE I+ + N+ QTLLFSA
Sbjct: 115 GTPGRLLDHLRRGTISLSKVKTLVLDEADQMLHMGFLGEVEEII-RQTPTNR-QTLLFSA 172
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII---RC 359
T+P+ V+ ++ +F++S ID+ + NV+ IV+ + A+ + +I R
Sbjct: 173 TMPANVRRLAERFMRS---PIDIHVQSERITVKNVKQIVVQTTDRAKQATLCKLIDEHRP 229
Query: 360 YSSGGRTIIFTETKESASQLADLL----PGARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
Y + IIF TK AS+L + L + LHGD+ QS+RE + FR+ K LVA
Sbjct: 230 YQA----IIFCRTKRRASKLNEELLELGYDSDELHGDLSQSKREQVMERFRNVKMQLLVA 285
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
T+VAARGLD+ + + + P+D ++YIHR GRTGRAG +
Sbjct: 286 TDVAARGLDVEGITHVFNYDVPQDAKSYIHRIGRTGRAGAQ 326
>gi|388455441|ref|ZP_10137736.1| ATP-dependent RNA helicase [Fluoribacter dumoffii Tex-KL]
Length = 565
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/355 (39%), Positives = 199/355 (56%), Gaps = 22/355 (6%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S+ + + F S L + L+ + PIQA T ++L+G D + A+TG GKT AF
Sbjct: 2 SQEITSFASFNFSDALNQALEDMKFTTPSPIQAQTIPLLLEGRDAIALAQTGTGKTAAFA 61
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY-GGAVGLTSCCLYG 223
LPIL++L+N + L+L PTRELA QV E F + G T L G
Sbjct: 62 LPILQNLSNV-----------QGTQALILAPTRELAIQVAEQFQLLSANQRGTTVAVLCG 110
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G Y Q +LK G VV+GTPGRI DHIER ++L +L+ +LDEADEMLRMGF+ED+E
Sbjct: 111 GQDYGRQLKQLKGGAQVVVGTPGRILDHIERRTLNLDNLRTFILDEADEMLRMGFIEDIE 170
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
I+ K+ + ++ LFSAT+P ++ I+ +L + +I++ S R L
Sbjct: 171 TIMAKLPEEKQIG--LFSATMPYRIRQIANTYLH-NPVSIEIRAETATVKSIEQR--FLF 225
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQRE 399
S + + ++ G I+F TK S ++A++L A A+HGDI Q+ RE
Sbjct: 226 ASGHQKPDALLRVLAVEEYQG-VIVFVRTKSSTEEVAEVLQQQGMRAMAIHGDITQALRE 284
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+A FR G LVAT+VAARGLD++ V +I + P D E Y+HR GRTGRAG
Sbjct: 285 RIIAQFRQGAIDILVATDVAARGLDVDRVTHVINYDLPHDNETYVHRIGRTGRAG 339
>gi|390940712|ref|YP_006404449.1| DNA/RNA helicase [Sulfurospirillum barnesii SES-3]
gi|390193819|gb|AFL68874.1| DNA/RNA helicase, superfamily II [Sulfurospirillum barnesii SES-3]
Length = 430
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/342 (38%), Positives = 198/342 (57%), Gaps = 14/342 (4%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+RE +K G + P+Q+ +VL+G D++ A+TG GKT A+ LP+L L+ K
Sbjct: 11 PVREAVKELGYTTPTPVQSKVIPLVLEGKDVMATAQTGTGKTAAYALPLLHILS----KK 66
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
++K+ + L+L+PTRELA QV VYG V L+S +YGG + Q KL KGI
Sbjct: 67 TQKSTTSKVVRALILVPTRELASQVGASVQVYGKNVALSSAAIYGGVKFTPQAKKLDKGI 126
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
D++I TPGR+ +H++ GN+DLS ++ V DEAD +L MGF ++V+ +L K QTL
Sbjct: 127 DILIATPGRLLEHVKLGNVDLSRVEIVVFDEADRILDMGFWDEVQTLLNLF--PKKRQTL 184
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFS L VK +S L KK + + N + + V + + +++ +I
Sbjct: 185 LFSVGLSKSVKRLSEVSL---KKPVTVAINNQGDFAKKVEQTLYLVDKERKCELLSFMIG 241
Query: 359 CYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ + + ++FT+TK+SA ++ D L + LHGD S+R + F+ LV
Sbjct: 242 TH-NWHQVLVFTKTKQSADEVGDYLNASGLKTLVLHGDKAHSKRTQAIHAFKENTIRVLV 300
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
AT++A+RGLDI D+ +I E P D E Y+HR+GRTGRAG E
Sbjct: 301 ATDIASRGLDIEDLPHVINYELPGDAEDYLHRAGRTGRAGKE 342
>gi|315499118|ref|YP_004087922.1| dead/deah box helicase domain-containing protein [Asticcacaulis
excentricus CB 48]
gi|315417130|gb|ADU13771.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
48]
Length = 605
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 201/355 (56%), Gaps = 16/355 (4%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L L+ +G + PIQA ++L+ DL+G A+TG GKT AF LPIL +
Sbjct: 9 LSASLLSTLEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALPILHHIL--- 65
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+++ R+ VLVL PTRELA Q+ + F Y +GL ++GG Y Q L+
Sbjct: 66 --SNRIIPAPRSCRVLVLSPTRELATQIADSFKAYSKGLGLQIATIFGGVKYGPQYKALQ 123
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
GID+++ TPGR+ DHIE+ IDL +++ VLDEAD+ML MGF++ + + ++ +
Sbjct: 124 GGIDILVATPGRLIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRL--PAQR 181
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
Q L FSAT+P + ++ + L + KK + E A + ++ R + +
Sbjct: 182 QNLFFSATMPKEIAGLANELLTNPKKV--EITPEATTAERVTQQVIF--IEQQRKRALLS 237
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFM 411
+ RT+IFT TK A ++A L A A+HGD QSQRE L F++G+
Sbjct: 238 ELYADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVR 297
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD 466
LVAT++AARG+D+++V +I E P EAY+HR GRT RAG E +IT V+D
Sbjct: 298 ALVATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKE-GHSITLVAD 351
>gi|157368742|ref|YP_001476731.1| ATP-dependent RNA helicase DeaD [Serratia proteamaculans 568]
gi|157320506|gb|ABV39603.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
Length = 653
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 202/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQA +L+G D++G A+TG GKT AF LP+L +L
Sbjct: 14 LSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNL---- 69
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
AS K AP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 70 -DASLK-----APQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRAL 123
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG ++LS+L VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 124 RQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEH- 182
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 183 -QTALFSATMPEAIRRITRRFMKEPQEV-------RIQSSVTTR---------------P 219
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y + G R IIF TK + ++A+ L + AL+GD
Sbjct: 220 DISQSYWTVQGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGD 279
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 280 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 339
Query: 453 AG 454
AG
Sbjct: 340 AG 341
>gi|403213513|emb|CCK68015.1| hypothetical protein KNAG_0A03280 [Kazachstania naganishii CBS
8797]
Length = 607
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 198/346 (57%), Gaps = 14/346 (4%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + ++ G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 160 LMENVKLARFTKPTPVQKYSIPIISIGRDLMACAQTGSGKTGGFLFPVLSESFKVGPSVV 219
Query: 179 SKKTGYGRA----PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
GY P+ +++ PTRELA Q+ ++ + + C +YGGAP Q ++
Sbjct: 220 QGNEGYSYQRKAYPTAVIMAPTRELATQIFDEAKKFCYRSWVNPCVVYGGAPIGNQLREM 279
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL--GKVEDA 292
+G D+++ TPGR+ D IERG I LS++K+ VLDEAD ML MGF + I+ + +
Sbjct: 280 DRGCDLLVATPGRLSDMIERGKISLSNVKYLVLDEADRMLDMGFEIQIRQIVEGCDMPPS 339
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
++ QTL+FSAT P+ ++H++ FL+ D I L + S N+ V+ S +
Sbjct: 340 SERQTLMFSATFPADIQHLARDFLRPDY--IFLSVGKVGSTSENITQRVMYVESMDKKSA 397
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
+ D++ S G T+IF ETK A QL D L A A+HGD QS+RE LA F+SG
Sbjct: 398 LLDLL-ASSEPGLTLIFVETKRMADQLTDFLIMQNLRATAIHGDRTQSERERALAAFKSG 456
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
+ LVAT VAARGLDI +V +I + P D++ Y+HR GRTGRAG
Sbjct: 457 RANILVATAVAARGLDIPNVTHVINYDLPGDIDDYVHRIGRTGRAG 502
>gi|336320086|ref|YP_004600054.1| DEAD/DEAH box helicase domain protein [[Cellvibrio] gilvus ATCC
13127]
gi|336103667|gb|AEI11486.1| DEAD/DEAH box helicase domain protein [[Cellvibrio] gilvus ATCC
13127]
Length = 581
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/354 (38%), Positives = 200/354 (56%), Gaps = 24/354 (6%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + + L GI FPIQAMT + L G D++G+A+TG GKTL F +P+L +
Sbjct: 45 FDVRPEIVQALADAGISHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGVPLLHRIV- 103
Query: 174 GPTKASKKTGYGR-----APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
A + GY + P LV++PTRELA QV D + +YGG Y
Sbjct: 104 ----ARDEEGYDQLRAPGKPQALVVVPTRELAVQVAGDLATASARRSVRVVQVYGGRAYE 159
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L G+DVV+GTPGR+ D +++ ++DLS ++ VLDEADEML +GF+ DVE +L
Sbjct: 160 PQIDALNAGVDVVVGTPGRMIDMLKQRHLDLSHVRTVVLDEADEMLDLGFLPDVETLLAA 219
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKT----IDLVGNEKMKASTNVRHIVLPC 344
+ T+LFSAT+P V ++ +++ D G + +K N++ +
Sbjct: 220 TPASR--HTMLFSATMPGAVVAMARRYMTQPTHIRAADPDDDGRQTVK---NIKQVAYRA 274
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREV 400
+ + +++ I++ G TI+F TK +A+++AD L A ALHGD+ Q RE
Sbjct: 275 HALDKVELLARILQAQGR-GLTIVFARTKRTAAKVADELVERGFAAGALHGDLGQGAREQ 333
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
L FR GK LVAT+VAARG+D+ DV +I + P D + Y+HR+GRTGRAG
Sbjct: 334 ALRAFRHGKVDVLVATDVAARGIDVEDVTHVINYQCPEDEKTYLHRTGRTGRAG 387
>gi|322831220|ref|YP_004211247.1| DEAD/DEAH box helicase [Rahnella sp. Y9602]
gi|384256388|ref|YP_005400322.1| ATP-dependent RNA helicase DeaD [Rahnella aquatilis HX2]
gi|321166421|gb|ADW72120.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
gi|380752364|gb|AFE56755.1| ATP-dependent RNA helicase DeaD [Rahnella aquatilis HX2]
Length = 640
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 201/362 (55%), Gaps = 57/362 (15%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ L G E PIQA +L G D++G A+TG GKT AF LP+L ++
Sbjct: 14 LSAPIISALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLHNI---- 69
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKL 234
AS K AP +LVL PTRELA QV E D G+ LYGG Y Q L
Sbjct: 70 -DASLK-----APQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRAL 123
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G VV+GTPGR+ DH++RG ++LS+L VLDEADEMLRMGF+EDVE I+ ++ +
Sbjct: 124 RQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEH- 182
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ ++++S R P
Sbjct: 183 -QTALFSATMPEAIRRITRRFMKDPQEV-------RIQSSVTTR---------------P 219
Query: 355 DIIRCYSS--GGR----------------TIIFTETKESASQLADLLP----GARALHGD 392
DI + Y S G R IIF TK + ++A+ L + AL+GD
Sbjct: 220 DISQSYWSVYGLRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGD 279
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+ RE TL + G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGR
Sbjct: 280 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 339
Query: 453 AG 454
AG
Sbjct: 340 AG 341
>gi|261345155|ref|ZP_05972799.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541]
gi|282566845|gb|EFB72380.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541]
Length = 660
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 204/364 (56%), Gaps = 61/364 (16%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S + L G E PIQ ++L+G+D++G A+TG GKT AF LP+L ++ P
Sbjct: 14 LSASILNALSDLGYEKPSPIQQQCIPLLLNGNDVLGMAQTGSGKTAAFGLPLLHNI--DP 71
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHE---DFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+AP +LVL PTRELA QV E DF + V + LYGG Y Q
Sbjct: 72 DL--------KAPQILVLAPTRELAVQVAEALSDFSKHMNRVNV--VALYGGQRYDVQLR 121
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
L++G VV+GTPGR+ DH++RG +DLS LK VLDEADEMLRMGF++DVE I+ ++
Sbjct: 122 ALRQGPQVVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIDDVENIMSQIPAQ 181
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QT LFSAT+P ++ I+ +F+K K+ ++++S R
Sbjct: 182 H--QTALFSATMPEPIRRITRRFMKDPKEI-------RIQSSITTR-------------- 218
Query: 353 IPDIIRCY--SSGGR----------------TIIFTETKESASQLADLLP----GARALH 390
PDI + Y SG R IIF TK + ++A+ L + AL+
Sbjct: 219 -PDIAQSYWTVSGMRKNEALVRFLESEDFDAAIIFVRTKNATLEVAEALERSGYNSAALN 277
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD+ Q+ RE TL ++G+ L+AT+VAARGLD+ + L++ + P D E+Y+HR GRT
Sbjct: 278 GDMNQALREQTLERLKNGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRT 337
Query: 451 GRAG 454
GRAG
Sbjct: 338 GRAG 341
>gi|163840630|ref|YP_001625035.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
gi|162954106|gb|ABY23621.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
Length = 631
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 210/372 (56%), Gaps = 25/372 (6%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L ++GI++ FPIQA T L G D++GR RTG GKTLAF LP++ L A ++
Sbjct: 89 LDAQGIDAPFPIQAKTLPDSLGGRDVLGRGRTGSGKTLAFGLPLVARL------AEREAA 142
Query: 184 YGRAPSV---LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
Y R P+ LVL PTRELA Q++ + A+GL + +YGG QE LK G+D+
Sbjct: 143 YMRKPNRPLGLVLAPTRELATQINATIEPLAKAMGLNTTVIYGGVSQQRQERALKAGVDI 202
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
VI PGR++D + + + L S++ VLDEAD M +GF+ V+ +L + Q LLF
Sbjct: 203 VIACPGRLEDLMRQKLVSLESVEITVLDEADHMADLGFLPVVKRLLDTTP--TQGQRLLF 260
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SATL + V I ++L + V K ST H++ + + Q+ I+
Sbjct: 261 SATLDNGVDKIVQRYLS--QPVTHSVDEPKAAVSTMEHHVLAVADQNVKKQL---IVELA 315
Query: 361 SSGGRTIIFTETKESASQLADLLPGARA----LHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+ GR ++F TK A +LA L A LHG++ Q+ R+ LA F SG LVAT
Sbjct: 316 AGTGRRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSSGDVRVLVAT 375
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAA 476
+VAARG+ ++DV+L+I +PP +AY+HRSGRT RAG + T+ +S +P +S
Sbjct: 376 DVAARGVHVDDVELVIHVDPPTAHKAYLHRSGRTARAGSDG--TVVTIS---LPEQQSDV 430
Query: 477 EELLNNSGLSAA 488
++L+ +G+ A
Sbjct: 431 KKLMRAAGVDVA 442
>gi|169347296|ref|ZP_02866234.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
gi|169293913|gb|EDS76046.1| DEAD/DEAH box helicase [Clostridium spiroforme DSM 1552]
Length = 531
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/338 (39%), Positives = 194/338 (57%), Gaps = 20/338 (5%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK-KT 182
+K G IQ ++L G D +G+A+TG GKTLAF G SK K
Sbjct: 19 IKDMGFSKPSQIQEKAIPILLTGVDAIGQAQTGTGKTLAF----------GSVLLSKIKP 68
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
R P ++L PTRELA Q+HE+ + G G C++GG+ Q +KKG+D+V+
Sbjct: 69 IDDRFPQAIILSPTRELAMQIHEEMNRIGKHNGSKIVCVFGGSDIEKQIRSIKKGVDIVV 128
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+ D + R + ++K+ VLDEADEML MGFVED+E IL KV+DA QT+LFSA
Sbjct: 129 GTPGRVMDLMRRKVLKFDNVKYVVLDEADEMLNMGFVEDIETILEKVDDAR--QTILFSA 186
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P+ +K I+ ++ D K + ++ K +T+V+ R + + +I ++
Sbjct: 187 TMPAGIKKIAQNYMHDDFKHVAVLS--KQTTATSVKQFYYEVKPKDRFETLCRLIDV-AN 243
Query: 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
IIF TK S ++ + + A+HGD+ Q+ R TL F+ G LVAT+V
Sbjct: 244 IKTGIIFCRTKRSVDEVTEQMQQSNYNVEAMHGDLNQNHRMNTLRKFKKGTINFLVATDV 303
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456
AARG+D+ +V +I E P+D+E+Y+HR GRTGRA E
Sbjct: 304 AARGIDVENVTHVINYELPQDIESYVHRIGRTGRADKE 341
>gi|375137560|ref|YP_004998209.1| DNA/RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359818181|gb|AEV70994.1| DNA/RNA helicase, superfamily II [Mycobacterium rhodesiae NBB3]
Length = 494
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/352 (39%), Positives = 200/352 (56%), Gaps = 32/352 (9%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G E F IQ +T + L G DL+G+ARTG GKTLAF +P+L+ +T P K + +G
Sbjct: 21 LSEDGKEHPFAIQELTMPLALAGDDLIGQARTGMGKTLAFGVPLLQRITTDPEK--ELSG 78
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDV------YGGAVGLTS---------CCLYGGAPYH 228
RA LV++PTREL QVH D + GGA TS +YGG PY
Sbjct: 79 IPRA---LVVVPTRELCLQVHSDLSIAAKYLTTGGAPAPTSGTADRKLVVTSIYGGRPYE 135
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L+KG+DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL +
Sbjct: 136 PQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLSMLVLDEADEMLDLGFLPDIERILRQ 195
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTN--VRHIVLPCSS 346
+ Q +LFSAT+P + ++ F+ + + A+T+ +
Sbjct: 196 IP--TDRQAMLFSATMPDPIITLARTFM---NQPTHIRAEAPHSAATHDTTEQFAYRAHA 250
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402
+ +++ I++ G T+IFT TK +A +++D L A+HGD+ Q RE L
Sbjct: 251 LDKVEMVARILQAEGRGA-TMIFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKAL 309
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
FR+G LVAT+VAARG+DI+D+ +I + P D +AY+HR GRTGRAG
Sbjct: 310 KSFRTGDIDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAG 361
>gi|401842749|gb|EJT44825.1| DED1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 609
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 199/349 (57%), Gaps = 21/349 (6%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 157 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 216
Query: 179 SKKTG--YGR--APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y + P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 217 PESQGSFYQKKAYPTAVIMAPTRELATQIFDESKKFTYRSWVKACVVYGGSPIGNQLREI 276
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G D+++ TPGR+ D +ERG I LS++K+ VLDEAD ML MGF + I VED +
Sbjct: 277 ERGCDLLVATPGRLNDLLERGKISLSNVKYLVLDEADRMLDMGFEPQIRHI---VEDCDM 333
Query: 295 V-----QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
QTL+FSAT P+ ++H++ FL I L S N+ VL + +
Sbjct: 334 TPVGARQTLMFSATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDK 390
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGF 405
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA F
Sbjct: 391 KSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 449
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
RSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAG
Sbjct: 450 RSGTASLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAG 498
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,069,705,002
Number of Sequences: 23463169
Number of extensions: 462894174
Number of successful extensions: 5501717
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 44617
Number of HSP's successfully gapped in prelim test: 34861
Number of HSP's that attempted gapping in prelim test: 4014266
Number of HSP's gapped (non-prelim): 906738
length of query: 652
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 503
effective length of database: 8,863,183,186
effective search space: 4458181142558
effective search space used: 4458181142558
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 80 (35.4 bits)