Query 006272
Match_columns 652
No_of_seqs 546 out of 4549
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 20:52:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 6.6E-77 1.4E-81 611.6 36.3 351 110-466 92-448 (519)
2 PRK11634 ATP-dependent RNA hel 100.0 1.2E-73 2.6E-78 626.4 56.1 463 108-589 5-561 (629)
3 KOG0330 ATP-dependent RNA heli 100.0 1.7E-75 3.7E-80 562.0 29.0 353 104-473 56-413 (476)
4 KOG0338 ATP-dependent RNA heli 100.0 8.8E-74 1.9E-78 566.3 27.9 356 108-477 180-543 (691)
5 KOG0342 ATP-dependent RNA heli 100.0 1.2E-70 2.5E-75 544.6 29.3 358 108-474 81-444 (543)
6 COG0513 SrmB Superfamily II DN 100.0 1E-69 2.2E-74 585.3 37.3 353 109-473 29-387 (513)
7 KOG0343 RNA Helicase [RNA proc 100.0 9.1E-69 2E-73 535.2 28.7 353 105-468 65-424 (758)
8 KOG0347 RNA helicase [RNA proc 100.0 1.9E-69 4E-74 540.2 21.5 374 104-482 176-585 (731)
9 KOG0328 Predicted ATP-dependen 100.0 7.5E-68 1.6E-72 487.9 28.2 358 103-477 21-383 (400)
10 KOG0340 ATP-dependent RNA heli 100.0 1.7E-67 3.8E-72 500.8 27.2 352 107-472 5-366 (442)
11 KOG0345 ATP-dependent RNA heli 100.0 1.4E-66 2.9E-71 511.8 31.7 348 109-465 4-363 (567)
12 KOG0333 U5 snRNP-like RNA heli 100.0 2.3E-66 5.1E-71 515.7 31.9 367 108-480 244-637 (673)
13 PRK10590 ATP-dependent RNA hel 100.0 4.5E-64 9.7E-69 539.6 44.9 345 110-464 2-350 (456)
14 PRK11776 ATP-dependent RNA hel 100.0 4.1E-64 8.9E-69 542.6 44.3 436 108-577 3-444 (460)
15 KOG0348 ATP-dependent RNA heli 100.0 6.4E-65 1.4E-69 506.2 30.0 358 105-467 132-555 (708)
16 KOG0336 ATP-dependent RNA heli 100.0 2.6E-64 5.6E-69 486.2 29.8 354 113-476 224-581 (629)
17 PTZ00110 helicase; Provisional 100.0 2.2E-63 4.8E-68 541.4 40.9 368 106-483 127-499 (545)
18 KOG0326 ATP-dependent RNA heli 100.0 2.2E-65 4.8E-70 479.2 21.2 343 102-461 78-424 (459)
19 KOG0335 ATP-dependent RNA heli 100.0 2.2E-64 4.7E-69 509.7 28.9 371 109-483 74-459 (482)
20 PRK04537 ATP-dependent RNA hel 100.0 1.4E-62 3.1E-67 536.5 44.4 352 109-468 9-365 (572)
21 PRK04837 ATP-dependent RNA hel 100.0 7.8E-63 1.7E-67 526.8 38.1 357 108-472 7-367 (423)
22 KOG0346 RNA helicase [RNA proc 100.0 4.6E-63 1E-67 482.4 26.9 352 109-469 19-412 (569)
23 PLN00206 DEAD-box ATP-dependen 100.0 3.8E-61 8.3E-66 522.7 40.2 367 106-483 118-490 (518)
24 KOG0341 DEAD-box protein abstr 100.0 2.5E-63 5.5E-68 476.2 16.1 367 106-483 167-544 (610)
25 PRK11192 ATP-dependent RNA hel 100.0 1.4E-59 3E-64 504.3 39.7 348 110-470 2-355 (434)
26 KOG0339 ATP-dependent RNA heli 100.0 6.5E-60 1.4E-64 467.1 31.1 354 106-470 220-578 (731)
27 KOG0350 DEAD-box ATP-dependent 100.0 4E-60 8.6E-65 469.0 29.3 365 107-483 125-556 (620)
28 PRK01297 ATP-dependent RNA hel 100.0 1.1E-58 2.3E-63 501.5 41.6 369 105-482 83-456 (475)
29 KOG0332 ATP-dependent RNA heli 100.0 9.5E-59 2.1E-63 443.7 23.6 359 104-482 85-458 (477)
30 KOG0334 RNA helicase [RNA proc 100.0 3.2E-57 6.8E-62 488.2 29.0 362 107-479 363-732 (997)
31 PTZ00424 helicase 45; Provisio 100.0 5.7E-55 1.2E-59 465.5 38.0 349 108-473 27-380 (401)
32 KOG0327 Translation initiation 100.0 4.1E-56 8.9E-61 430.2 23.1 347 108-473 25-376 (397)
33 KOG0337 ATP-dependent RNA heli 100.0 7.1E-56 1.5E-60 430.2 18.9 352 108-474 20-375 (529)
34 KOG4284 DEAD box protein [Tran 100.0 7.1E-55 1.5E-59 442.2 24.9 359 104-479 20-392 (980)
35 TIGR03817 DECH_helic helicase/ 100.0 2.8E-53 6.1E-58 474.7 36.0 345 115-481 20-401 (742)
36 KOG0344 ATP-dependent RNA heli 100.0 7.2E-53 1.6E-57 428.1 25.5 365 114-490 141-517 (593)
37 PLN03137 ATP-dependent DNA hel 100.0 5.3E-51 1.2E-55 451.4 33.4 326 113-463 441-784 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 1.3E-49 2.7E-54 428.8 31.4 325 126-476 6-342 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 3.9E-48 8.5E-53 427.7 33.1 335 114-476 7-352 (607)
40 PRK13767 ATP-dependent helicas 100.0 1.6E-47 3.4E-52 437.0 35.1 348 116-471 18-403 (876)
41 KOG0329 ATP-dependent RNA heli 100.0 7.4E-49 1.6E-53 357.0 17.3 324 103-473 36-361 (387)
42 TIGR01389 recQ ATP-dependent D 100.0 4.1E-47 8.9E-52 421.3 30.8 325 122-474 3-338 (591)
43 TIGR02621 cas3_GSU0051 CRISPR- 100.0 7.7E-47 1.7E-51 413.4 32.2 313 127-464 12-388 (844)
44 PRK02362 ski2-like helicase; P 100.0 3.5E-47 7.6E-52 430.9 29.8 324 110-456 2-385 (737)
45 PRK00254 ski2-like helicase; P 100.0 1E-44 2.3E-49 409.7 31.8 316 110-455 2-375 (720)
46 COG0514 RecQ Superfamily II DN 100.0 1.1E-44 2.3E-49 380.7 26.9 320 122-467 7-338 (590)
47 TIGR00580 mfd transcription-re 100.0 8.9E-44 1.9E-48 401.2 32.8 319 114-466 434-770 (926)
48 PRK01172 ski2-like helicase; P 100.0 1.5E-43 3.3E-48 398.7 31.2 337 110-473 2-385 (674)
49 COG1201 Lhr Lhr-like helicases 100.0 2.6E-43 5.7E-48 383.5 28.9 339 116-469 8-365 (814)
50 PRK10689 transcription-repair 100.0 7.8E-43 1.7E-47 401.9 34.0 315 118-466 588-919 (1147)
51 PRK09751 putative ATP-dependen 100.0 1.7E-42 3.6E-47 400.3 30.9 296 151-454 1-372 (1490)
52 TIGR00643 recG ATP-dependent D 100.0 4E-41 8.8E-46 373.5 35.3 319 118-466 223-566 (630)
53 PRK10917 ATP-dependent DNA hel 100.0 9.4E-41 2E-45 372.8 35.8 313 121-466 252-589 (681)
54 KOG0349 Putative DEAD-box RNA 100.0 1.3E-42 2.8E-47 338.1 16.3 274 186-463 285-612 (725)
55 PHA02653 RNA helicase NPH-II; 100.0 1.2E-40 2.6E-45 363.6 30.9 308 134-469 167-516 (675)
56 PRK09401 reverse gyrase; Revie 100.0 2.3E-40 5.1E-45 382.2 32.6 300 122-453 71-431 (1176)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.8E-39 3.9E-44 362.8 30.6 298 135-467 6-336 (819)
58 PRK14701 reverse gyrase; Provi 100.0 3.4E-39 7.3E-44 379.8 32.1 312 118-460 66-450 (1638)
59 PRK11664 ATP-dependent RNA hel 100.0 6.1E-39 1.3E-43 359.6 28.9 294 135-462 9-335 (812)
60 TIGR01587 cas3_core CRISPR-ass 100.0 7.5E-39 1.6E-43 335.8 25.0 288 148-458 1-324 (358)
61 PRK12898 secA preprotein trans 100.0 3.1E-38 6.7E-43 338.8 26.5 316 127-467 100-587 (656)
62 KOG0352 ATP-dependent DNA heli 100.0 1.2E-38 2.6E-43 310.2 20.4 322 119-467 6-363 (641)
63 KOG0351 ATP-dependent DNA heli 100.0 1.5E-37 3.2E-42 345.5 27.2 330 122-476 255-601 (941)
64 TIGR01054 rgy reverse gyrase. 100.0 4.1E-37 8.8E-42 356.0 29.1 289 118-438 65-409 (1171)
65 PHA02558 uvsW UvsW helicase; P 100.0 4.6E-37 1E-41 332.8 27.7 300 129-456 112-442 (501)
66 PRK09200 preprotein translocas 100.0 9.9E-37 2.1E-41 334.2 28.5 321 127-467 75-542 (790)
67 COG1111 MPH1 ERCC4-like helica 100.0 4.7E-36 1E-40 301.0 30.4 330 128-475 12-491 (542)
68 COG1204 Superfamily II helicas 100.0 8.5E-37 1.8E-41 337.8 26.3 326 114-458 14-398 (766)
69 TIGR00963 secA preprotein tran 100.0 1.3E-36 2.9E-41 327.6 25.0 317 127-468 53-519 (745)
70 COG1205 Distinct helicase fami 100.0 3.7E-36 8E-41 337.5 29.0 349 116-481 55-437 (851)
71 TIGR03158 cas3_cyano CRISPR-as 100.0 7E-36 1.5E-40 309.6 28.1 289 135-451 1-357 (357)
72 COG1202 Superfamily II helicas 100.0 2.5E-36 5.4E-41 304.3 22.6 331 106-457 191-542 (830)
73 TIGR03714 secA2 accessory Sec 100.0 1.6E-35 3.5E-40 321.4 27.6 318 127-468 67-539 (762)
74 PRK11131 ATP-dependent RNA hel 100.0 4.4E-35 9.5E-40 333.1 26.3 295 135-467 78-411 (1294)
75 PRK13766 Hef nuclease; Provisi 100.0 5.2E-34 1.1E-38 327.7 34.1 309 128-455 12-469 (773)
76 KOG0353 ATP-dependent DNA heli 100.0 8.9E-35 1.9E-39 279.1 23.1 331 109-463 71-464 (695)
77 TIGR00603 rad25 DNA repair hel 100.0 1.3E-32 2.9E-37 298.9 30.2 322 130-482 254-623 (732)
78 KOG0947 Cytoplasmic exosomal R 100.0 1.1E-32 2.4E-37 292.2 22.4 311 127-468 294-723 (1248)
79 KOG0354 DEAD-box like helicase 100.0 4E-32 8.7E-37 288.8 26.4 312 128-456 59-520 (746)
80 KOG0948 Nuclear exosomal RNA h 100.0 2.2E-33 4.7E-38 290.5 14.1 304 131-463 129-534 (1041)
81 KOG0952 DNA/RNA helicase MER3/ 100.0 6.6E-32 1.4E-36 289.7 25.4 342 125-476 104-500 (1230)
82 PRK05580 primosome assembly pr 100.0 6.6E-31 1.4E-35 292.4 30.4 309 131-468 144-551 (679)
83 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.6E-31 7.8E-36 302.5 26.6 295 137-466 73-403 (1283)
84 cd00268 DEADc DEAD-box helicas 100.0 3.4E-30 7.4E-35 247.9 24.5 197 111-317 1-197 (203)
85 PRK09694 helicase Cas3; Provis 100.0 9.1E-30 2E-34 284.8 27.5 311 129-455 284-664 (878)
86 PRK13104 secA preprotein trans 100.0 1.6E-29 3.5E-34 276.5 27.9 324 127-470 79-592 (896)
87 COG4581 Superfamily II RNA hel 100.0 1E-29 2.2E-34 281.0 25.3 315 124-464 113-533 (1041)
88 PRK04914 ATP-dependent helicas 100.0 3.9E-29 8.5E-34 281.3 30.5 314 131-462 152-599 (956)
89 PRK12899 secA preprotein trans 100.0 1.6E-28 3.4E-33 268.0 28.4 149 111-274 64-228 (970)
90 TIGR00595 priA primosomal prot 100.0 1.1E-28 2.3E-33 265.1 24.9 290 150-468 1-383 (505)
91 COG1200 RecG RecG-like helicas 100.0 5.4E-28 1.2E-32 253.7 29.4 322 114-467 245-592 (677)
92 PRK12904 preprotein translocas 100.0 5.8E-28 1.3E-32 264.3 26.9 322 127-470 78-578 (830)
93 KOG0951 RNA helicase BRR2, DEA 100.0 6.2E-28 1.3E-32 262.2 25.5 353 115-481 295-716 (1674)
94 PRK12906 secA preprotein trans 100.0 1.1E-27 2.5E-32 260.9 24.1 320 127-467 77-554 (796)
95 COG1197 Mfd Transcription-repa 100.0 3.5E-27 7.6E-32 261.0 27.8 322 114-469 577-916 (1139)
96 COG1061 SSL2 DNA or RNA helica 100.0 1.5E-27 3.3E-32 253.4 23.9 293 130-452 35-375 (442)
97 PF00270 DEAD: DEAD/DEAH box h 100.0 4.8E-27 1E-31 219.1 20.4 167 133-310 1-168 (169)
98 PRK13107 preprotein translocas 99.9 5.7E-26 1.2E-30 247.9 24.1 322 127-469 79-595 (908)
99 COG4098 comFA Superfamily II D 99.9 2.4E-24 5.2E-29 205.8 28.1 312 131-479 97-427 (441)
100 COG1643 HrpA HrpA-like helicas 99.9 7.1E-25 1.5E-29 241.7 26.6 296 133-459 52-380 (845)
101 KOG0922 DEAH-box RNA helicase 99.9 1.5E-24 3.3E-29 225.4 25.7 286 133-454 53-379 (674)
102 KOG0950 DNA polymerase theta/e 99.9 2.5E-25 5.4E-30 238.6 20.4 344 116-477 208-621 (1008)
103 PRK11448 hsdR type I restricti 99.9 1.4E-24 3.1E-29 250.2 26.9 306 130-454 412-801 (1123)
104 KOG0926 DEAH-box RNA helicase 99.9 2.8E-24 6.1E-29 224.6 18.4 298 136-454 261-693 (1172)
105 COG1203 CRISPR-associated heli 99.9 3.4E-23 7.5E-28 233.0 22.8 312 132-456 196-538 (733)
106 KOG0923 mRNA splicing factor A 99.9 5.3E-23 1.2E-27 211.4 22.0 294 131-459 265-599 (902)
107 PLN03142 Probable chromatin-re 99.9 6.7E-23 1.5E-27 231.8 23.5 311 131-461 169-592 (1033)
108 KOG0924 mRNA splicing factor A 99.9 5.2E-22 1.1E-26 204.5 21.0 300 128-463 353-694 (1042)
109 KOG0920 ATP-dependent RNA heli 99.9 2.1E-21 4.5E-26 213.3 23.2 300 131-454 173-533 (924)
110 TIGR01407 dinG_rel DnaQ family 99.9 4.4E-20 9.6E-25 212.4 32.1 349 116-481 231-829 (850)
111 PRK12900 secA preprotein trans 99.9 7E-21 1.5E-25 209.0 20.7 120 347-468 581-713 (1025)
112 KOG0949 Predicted helicase, DE 99.9 2E-20 4.4E-25 199.9 21.3 159 131-306 511-673 (1330)
113 COG1198 PriA Primosomal protei 99.9 3.4E-20 7.5E-25 201.9 23.5 310 130-468 197-605 (730)
114 TIGR00631 uvrb excinuclease AB 99.9 1.6E-19 3.4E-24 198.9 29.0 125 351-478 430-563 (655)
115 smart00487 DEXDc DEAD-like hel 99.8 3E-19 6.5E-24 170.9 21.2 179 126-317 3-183 (201)
116 PRK12326 preprotein translocas 99.8 1.3E-18 2.8E-23 186.2 26.2 319 127-472 75-554 (764)
117 COG0556 UvrB Helicase subunit 99.8 6.7E-19 1.5E-23 178.1 20.8 192 294-503 386-586 (663)
118 KOG4150 Predicted ATP-dependen 99.8 4E-19 8.6E-24 179.8 17.5 344 124-483 279-657 (1034)
119 KOG0925 mRNA splicing factor A 99.8 1.2E-18 2.5E-23 173.8 20.1 307 108-454 24-376 (699)
120 PRK05298 excinuclease ABC subu 99.8 1.4E-17 3.1E-22 185.1 30.3 112 352-465 435-555 (652)
121 COG1110 Reverse gyrase [DNA re 99.8 1.4E-17 3.1E-22 180.3 26.6 284 122-438 73-417 (1187)
122 KOG0387 Transcription-coupled 99.8 7.2E-18 1.6E-22 177.8 23.0 339 114-482 196-676 (923)
123 TIGR00348 hsdR type I site-spe 99.8 2.2E-17 4.9E-22 184.2 26.9 310 132-465 239-649 (667)
124 COG4096 HsdR Type I site-speci 99.8 4.1E-18 8.9E-23 181.9 17.7 295 130-454 164-526 (875)
125 KOG0385 Chromatin remodeling c 99.8 2E-17 4.2E-22 173.7 22.2 312 131-462 167-593 (971)
126 PRK07246 bifunctional ATP-depe 99.8 8.1E-17 1.8E-21 182.7 28.2 330 127-480 242-797 (820)
127 PRK13103 secA preprotein trans 99.8 4.1E-17 8.9E-22 179.1 24.4 130 127-274 79-215 (913)
128 PRK12903 secA preprotein trans 99.8 1.4E-16 3E-21 173.0 24.3 327 127-473 75-547 (925)
129 KOG1123 RNA polymerase II tran 99.7 3.1E-17 6.7E-22 164.2 15.3 297 130-455 301-636 (776)
130 CHL00122 secA preprotein trans 99.7 9.5E-16 2.1E-20 167.7 23.6 130 127-274 73-209 (870)
131 KOG0953 Mitochondrial RNA heli 99.7 4.7E-16 1E-20 158.1 18.4 278 146-477 191-486 (700)
132 KOG0390 DNA repair protein, SN 99.7 1.6E-15 3.5E-20 164.5 23.7 316 131-462 238-701 (776)
133 KOG0384 Chromodomain-helicase 99.7 1.1E-16 2.4E-21 175.9 14.1 308 130-461 369-804 (1373)
134 TIGR03117 cas_csf4 CRISPR-asso 99.7 1.8E-14 3.8E-19 156.5 29.8 112 362-476 469-625 (636)
135 cd00046 DEXDc DEAD-like helica 99.7 1E-15 2.2E-20 137.6 17.0 144 147-304 1-144 (144)
136 cd00079 HELICc Helicase superf 99.7 2.4E-16 5.2E-21 140.0 10.8 122 338-460 3-129 (131)
137 PF00271 Helicase_C: Helicase 99.7 1E-16 2.2E-21 128.1 6.7 70 385-454 9-78 (78)
138 COG4889 Predicted helicase [Ge 99.7 3.7E-16 8E-21 165.6 11.7 318 119-454 149-573 (1518)
139 PRK08074 bifunctional ATP-depe 99.7 6.5E-14 1.4E-18 162.2 30.5 120 362-481 751-908 (928)
140 KOG0392 SNF2 family DNA-depend 99.6 6E-15 1.3E-19 161.9 19.1 317 131-461 975-1447(1549)
141 PRK12902 secA preprotein trans 99.6 2.3E-14 4.9E-19 156.7 23.1 130 127-274 82-218 (939)
142 KOG0951 RNA helicase BRR2, DEA 99.6 5E-15 1.1E-19 162.8 17.5 315 131-480 1143-1507(1674)
143 PF04851 ResIII: Type III rest 99.6 7.2E-15 1.6E-19 138.8 14.2 152 131-305 3-183 (184)
144 KOG0921 Dosage compensation co 99.6 4.7E-14 1E-18 150.4 21.4 293 137-454 384-763 (1282)
145 TIGR02562 cas3_yersinia CRISPR 99.6 9.3E-14 2E-18 154.2 19.7 310 131-456 408-882 (1110)
146 KOG1000 Chromatin remodeling p 99.6 4.9E-13 1.1E-17 134.4 22.6 310 129-462 196-597 (689)
147 KOG0389 SNF2 family DNA-depend 99.6 2.1E-13 4.6E-18 144.3 21.0 328 132-478 400-900 (941)
148 PF06862 DUF1253: Protein of u 99.5 4E-12 8.7E-17 131.4 24.3 267 186-454 36-397 (442)
149 COG1199 DinG Rad3-related DNA 99.5 1.7E-12 3.7E-17 147.0 23.8 121 362-482 478-633 (654)
150 KOG2340 Uncharacterized conser 99.5 4.2E-12 9E-17 128.9 20.3 324 130-454 215-652 (698)
151 smart00490 HELICc helicase sup 99.5 7.5E-14 1.6E-18 112.6 6.1 70 385-454 13-82 (82)
152 PRK11747 dinG ATP-dependent DN 99.5 4.8E-11 1E-15 134.2 29.6 102 362-467 533-674 (697)
153 PRK14873 primosome assembly pr 99.4 7.5E-12 1.6E-16 138.0 21.1 135 152-311 166-310 (665)
154 KOG1002 Nucleotide excision re 99.4 1.5E-11 3.2E-16 123.8 20.3 103 364-466 639-748 (791)
155 PF08152 GUCT: GUCT (NUC152) d 99.4 3.2E-13 6.9E-18 110.2 6.8 97 500-596 1-97 (97)
156 PRK12901 secA preprotein trans 99.4 7.4E-12 1.6E-16 138.6 18.3 127 131-274 169-303 (1112)
157 KOG0391 SNF2 family DNA-depend 99.4 3.6E-11 7.7E-16 131.6 22.9 108 348-455 1260-1374(1958)
158 KOG1015 Transcription regulato 99.3 9.9E-11 2.2E-15 125.9 18.0 114 348-461 1126-1270(1567)
159 TIGR00604 rad3 DNA repair heli 99.3 1.1E-09 2.4E-14 124.3 27.7 74 128-211 7-84 (705)
160 PF02399 Herpes_ori_bp: Origin 99.3 3E-10 6.6E-15 123.6 20.2 278 146-455 49-378 (824)
161 KOG0386 Chromatin remodeling c 99.2 4.2E-11 9.2E-16 130.2 11.2 112 347-458 709-828 (1157)
162 PF07652 Flavi_DEAD: Flaviviru 99.2 8E-11 1.7E-15 101.6 10.4 135 145-308 3-140 (148)
163 KOG4439 RNA polymerase II tran 99.2 2E-09 4.3E-14 113.2 18.8 101 362-462 745-852 (901)
164 KOG0388 SNF2 family DNA-depend 99.1 1.8E-09 3.8E-14 113.3 16.6 115 347-461 1027-1147(1185)
165 PF00176 SNF2_N: SNF2 family N 99.1 7.9E-10 1.7E-14 113.1 13.1 154 135-304 1-172 (299)
166 smart00489 DEXDc3 DEAD-like he 99.1 1.1E-09 2.4E-14 110.1 13.5 73 131-210 8-84 (289)
167 smart00488 DEXDc2 DEAD-like he 99.1 1.1E-09 2.4E-14 110.1 13.5 73 131-210 8-84 (289)
168 COG0653 SecA Preprotein transl 99.1 6E-09 1.3E-13 114.4 18.3 127 131-274 80-213 (822)
169 COG0553 HepA Superfamily II DN 99.0 5.2E-09 1.1E-13 123.5 18.4 115 348-462 692-816 (866)
170 PF07517 SecA_DEAD: SecA DEAD- 98.9 1.5E-08 3.3E-13 98.9 14.5 130 127-274 74-210 (266)
171 COG0610 Type I site-specific r 98.7 3.1E-06 6.7E-11 98.3 26.8 311 147-482 274-666 (962)
172 KOG0952 DNA/RNA helicase MER3/ 98.5 1.5E-08 3.3E-13 111.4 -1.3 257 131-409 927-1205(1230)
173 PRK15483 type III restriction- 98.5 1E-06 2.3E-11 99.4 12.3 73 409-482 501-582 (986)
174 TIGR00596 rad1 DNA repair prot 98.3 3.8E-06 8.3E-11 94.8 12.1 41 237-277 7-47 (814)
175 PF13086 AAA_11: AAA domain; P 98.3 1.8E-06 3.9E-11 84.7 8.1 74 131-209 1-75 (236)
176 PF13604 AAA_30: AAA domain; P 98.3 4.2E-06 9E-11 79.3 10.0 122 131-301 1-128 (196)
177 COG3587 Restriction endonuclea 98.3 3.6E-05 7.7E-10 84.0 17.6 47 408-454 482-528 (985)
178 PF02562 PhoH: PhoH-like prote 98.2 1.3E-06 2.8E-11 82.0 5.5 144 129-300 2-152 (205)
179 KOG1802 RNA helicase nonsense 98.2 1.3E-05 2.8E-10 84.6 12.5 83 124-222 403-485 (935)
180 KOG1016 Predicted DNA helicase 98.2 6.7E-05 1.5E-09 80.5 17.1 101 363-463 719-844 (1387)
181 PF13872 AAA_34: P-loop contai 98.1 5.1E-05 1.1E-09 74.6 12.7 176 109-310 21-226 (303)
182 KOG1132 Helicase of the DEAD s 98.1 1.3E-05 2.8E-10 87.6 9.3 141 131-275 21-261 (945)
183 PF13307 Helicase_C_2: Helicas 98.0 3.1E-05 6.6E-10 71.4 10.2 103 362-467 8-150 (167)
184 KOG1803 DNA helicase [Replicat 98.0 2.9E-05 6.3E-10 81.8 10.9 64 131-207 185-249 (649)
185 PF12340 DUF3638: Protein of u 97.9 0.00012 2.7E-09 69.3 11.2 127 111-252 5-145 (229)
186 PF09848 DUF2075: Uncharacteri 97.9 5.8E-05 1.3E-09 78.8 9.9 108 148-288 3-117 (352)
187 PRK10536 hypothetical protein; 97.9 0.00014 2.9E-09 70.4 11.2 142 127-300 55-209 (262)
188 PF14617 CMS1: U3-containing 9 97.8 4.7E-05 1E-09 73.6 7.9 87 185-272 124-212 (252)
189 PF03880 DbpA: DbpA RNA bindin 97.8 4.1E-05 9E-10 59.6 5.6 68 517-587 1-73 (74)
190 PRK10875 recD exonuclease V su 97.8 0.00019 4.2E-09 79.3 12.6 141 132-301 153-299 (615)
191 TIGR00376 DNA helicase, putati 97.8 0.00021 4.4E-09 80.0 12.2 66 131-209 157-223 (637)
192 KOG1001 Helicase-like transcri 97.7 0.00018 3.9E-09 79.8 11.0 98 364-461 540-643 (674)
193 PF13245 AAA_19: Part of AAA d 97.7 0.0001 2.2E-09 57.7 6.5 60 139-207 2-62 (76)
194 TIGR01447 recD exodeoxyribonuc 97.7 0.00047 1E-08 76.1 13.4 140 133-300 147-292 (586)
195 TIGR01448 recD_rel helicase, p 97.6 0.00074 1.6E-08 76.8 13.4 131 127-301 320-450 (720)
196 PRK13889 conjugal transfer rel 97.4 0.0018 3.8E-08 75.1 13.7 127 127-303 343-470 (988)
197 TIGR02768 TraA_Ti Ti-type conj 97.3 0.0032 6.9E-08 72.0 14.4 122 131-301 352-474 (744)
198 PF00580 UvrD-helicase: UvrD/R 97.2 0.0011 2.4E-08 68.1 8.6 124 132-272 1-126 (315)
199 PRK04296 thymidine kinase; Pro 97.1 0.00054 1.2E-08 64.6 4.9 109 147-303 3-114 (190)
200 PF13401 AAA_22: AAA domain; P 97.1 0.0008 1.7E-08 59.2 5.8 22 145-166 3-24 (131)
201 COG3421 Uncharacterized protei 97.1 0.0022 4.7E-08 67.8 9.4 153 151-316 2-176 (812)
202 PRK13826 Dtr system oriT relax 97.0 0.0085 1.8E-07 70.1 14.3 139 115-303 366-505 (1102)
203 KOG3973 Uncharacterized conser 97.0 0.0011 2.5E-08 64.5 6.0 28 118-145 6-33 (465)
204 PRK14722 flhF flagellar biosyn 97.0 0.0052 1.1E-07 63.5 10.7 132 146-316 137-270 (374)
205 cd00009 AAA The AAA+ (ATPases 96.9 0.011 2.5E-07 52.5 11.6 18 146-163 19-36 (151)
206 COG1875 NYN ribonuclease and A 96.9 0.0019 4E-08 64.6 6.6 143 127-300 224-384 (436)
207 COG1419 FlhF Flagellar GTP-bin 96.9 0.032 6.8E-07 57.5 15.3 133 145-316 202-336 (407)
208 KOG1805 DNA replication helica 96.9 0.0045 9.8E-08 69.1 9.6 124 130-274 668-809 (1100)
209 PF05970 PIF1: PIF1-like helic 96.8 0.0029 6.3E-08 66.2 7.6 60 131-203 1-66 (364)
210 PRK08181 transposase; Validate 96.8 0.014 3E-07 57.9 11.5 22 143-164 103-124 (269)
211 PRK06526 transposase; Provisio 96.7 0.0072 1.6E-07 59.5 8.6 31 141-171 93-123 (254)
212 PRK07952 DNA replication prote 96.7 0.019 4E-07 56.1 11.3 44 259-303 160-204 (244)
213 KOG0298 DEAD box-containing he 96.7 0.0072 1.6E-07 69.4 9.3 157 145-308 373-554 (1394)
214 TIGR02760 TraI_TIGR conjugativ 96.6 0.071 1.5E-06 67.3 18.7 210 131-384 429-647 (1960)
215 PRK14974 cell division protein 96.6 0.021 4.6E-07 58.4 11.9 55 260-316 221-276 (336)
216 PRK12723 flagellar biosynthesi 96.6 0.036 7.7E-07 58.0 13.6 132 147-315 175-309 (388)
217 KOG0921 Dosage compensation co 96.6 0.003 6.5E-08 69.6 5.6 49 127-175 402-450 (1282)
218 PRK11889 flhF flagellar biosyn 96.6 0.056 1.2E-06 55.9 14.3 130 147-316 242-375 (436)
219 PHA02533 17 large terminase pr 96.5 0.017 3.7E-07 63.2 10.8 150 131-304 59-210 (534)
220 PF00448 SRP54: SRP54-type pro 96.4 0.0092 2E-07 56.4 7.2 132 148-316 3-137 (196)
221 KOG0701 dsRNA-specific nucleas 96.4 0.0026 5.7E-08 75.7 4.3 90 365-454 294-399 (1606)
222 PF13871 Helicase_C_4: Helicas 96.4 0.013 2.9E-07 57.6 8.4 66 400-465 52-125 (278)
223 smart00382 AAA ATPases associa 96.4 0.0062 1.4E-07 53.8 5.6 19 146-164 2-20 (148)
224 PRK06893 DNA replication initi 96.3 0.02 4.3E-07 55.8 9.1 48 259-307 89-137 (229)
225 PRK05642 DNA replication initi 96.3 0.013 2.8E-07 57.2 7.8 46 259-306 95-141 (234)
226 PRK06921 hypothetical protein; 96.3 0.07 1.5E-06 53.1 13.1 27 145-172 116-142 (266)
227 cd01124 KaiC KaiC is a circadi 96.3 0.056 1.2E-06 50.7 11.8 49 149-211 2-50 (187)
228 PRK08727 hypothetical protein; 96.3 0.021 4.5E-07 55.8 9.0 17 147-163 42-58 (233)
229 TIGR01075 uvrD DNA helicase II 96.2 0.017 3.6E-07 66.5 9.2 71 130-211 3-73 (715)
230 PRK10919 ATP-dependent DNA hel 96.2 0.017 3.8E-07 65.5 9.3 70 131-211 2-71 (672)
231 PF05127 Helicase_RecD: Helica 96.2 0.0018 4E-08 59.3 1.1 124 150-305 1-124 (177)
232 cd01120 RecA-like_NTPases RecA 96.2 0.026 5.7E-07 51.3 8.8 21 149-169 2-22 (165)
233 KOG0989 Replication factor C, 96.1 0.01 2.2E-07 58.2 5.7 44 257-303 125-168 (346)
234 cd01122 GP4d_helicase GP4d_hel 96.1 0.022 4.8E-07 57.1 8.6 122 141-276 25-155 (271)
235 TIGR03420 DnaA_homol_Hda DnaA 96.0 0.049 1.1E-06 52.9 10.4 21 145-165 37-57 (226)
236 PRK08084 DNA replication initi 96.0 0.063 1.4E-06 52.5 11.0 44 262-306 98-142 (235)
237 PRK14712 conjugal transfer nic 96.0 0.039 8.4E-07 66.9 11.2 63 131-204 835-901 (1623)
238 PRK11773 uvrD DNA-dependent he 96.0 0.021 4.5E-07 65.7 8.6 71 130-211 8-78 (721)
239 PRK12727 flagellar biosynthesi 96.0 0.33 7.1E-06 52.4 16.7 130 145-316 349-482 (559)
240 TIGR01547 phage_term_2 phage t 95.9 0.031 6.7E-07 59.5 9.2 147 148-316 3-152 (396)
241 PRK12377 putative replication 95.9 0.081 1.7E-06 51.9 10.9 47 146-206 101-147 (248)
242 PRK08116 hypothetical protein; 95.9 0.22 4.7E-06 49.7 14.2 26 147-173 115-140 (268)
243 PRK05707 DNA polymerase III su 95.9 0.041 8.9E-07 56.5 9.2 36 131-166 3-42 (328)
244 TIGR01074 rep ATP-dependent DN 95.8 0.035 7.5E-07 63.5 9.6 69 132-211 2-70 (664)
245 PRK11331 5-methylcytosine-spec 95.8 0.03 6.5E-07 59.0 8.2 33 132-164 180-212 (459)
246 PRK07764 DNA polymerase III su 95.8 0.069 1.5E-06 61.4 11.8 44 259-306 118-161 (824)
247 PRK13709 conjugal transfer nic 95.8 0.08 1.7E-06 65.2 12.8 65 130-203 966-1032(1747)
248 PF03354 Terminase_1: Phage Te 95.8 0.027 5.9E-07 61.3 8.2 148 134-300 1-159 (477)
249 KOG1131 RNA polymerase II tran 95.8 0.058 1.3E-06 56.4 9.6 46 128-173 13-62 (755)
250 PRK05703 flhF flagellar biosyn 95.7 0.21 4.5E-06 53.3 14.2 130 146-315 221-354 (424)
251 PRK14964 DNA polymerase III su 95.7 0.083 1.8E-06 56.9 11.1 45 259-307 114-158 (491)
252 PRK12726 flagellar biosynthesi 95.7 0.24 5.2E-06 51.1 13.7 24 146-169 206-229 (407)
253 PRK08769 DNA polymerase III su 95.7 0.076 1.6E-06 54.1 10.1 43 129-172 2-51 (319)
254 TIGR02785 addA_Gpos recombinat 95.6 0.062 1.3E-06 65.3 11.1 123 132-272 2-126 (1232)
255 PRK14723 flhF flagellar biosyn 95.6 0.19 4.1E-06 56.8 14.0 23 146-168 185-207 (767)
256 PRK11054 helD DNA helicase IV; 95.6 0.053 1.2E-06 61.3 9.8 73 128-211 193-265 (684)
257 PRK06731 flhF flagellar biosyn 95.6 0.26 5.5E-06 49.0 13.4 132 145-316 74-209 (270)
258 COG1444 Predicted P-loop ATPas 95.6 0.059 1.3E-06 60.1 9.7 155 117-305 200-357 (758)
259 PRK06835 DNA replication prote 95.6 0.25 5.4E-06 50.7 13.6 27 145-172 182-208 (329)
260 PRK14956 DNA polymerase III su 95.6 0.066 1.4E-06 57.1 9.6 19 148-166 42-60 (484)
261 PRK14721 flhF flagellar biosyn 95.5 0.12 2.6E-06 54.6 11.4 133 145-316 190-324 (420)
262 PRK06995 flhF flagellar biosyn 95.5 0.14 3E-06 55.0 11.9 23 146-168 256-278 (484)
263 PF05621 TniB: Bacterial TniB 95.5 0.059 1.3E-06 53.6 8.4 122 147-300 62-186 (302)
264 COG3973 Superfamily I DNA and 95.5 0.13 2.8E-06 55.2 11.2 91 115-212 188-285 (747)
265 TIGR02760 TraI_TIGR conjugativ 95.5 0.075 1.6E-06 67.1 11.2 62 130-203 1018-1084(1960)
266 PLN03134 glycine-rich RNA-bind 95.5 0.059 1.3E-06 48.0 7.6 70 516-591 34-114 (144)
267 PF05876 Terminase_GpA: Phage 95.4 0.025 5.4E-07 62.5 6.1 126 130-274 15-147 (557)
268 PF00308 Bac_DnaA: Bacterial d 95.4 0.056 1.2E-06 52.1 7.9 49 259-308 95-144 (219)
269 PRK12422 chromosomal replicati 95.3 0.087 1.9E-06 56.5 9.8 52 259-311 200-252 (445)
270 PRK00771 signal recognition pa 95.3 0.12 2.5E-06 55.1 10.3 53 262-316 176-229 (437)
271 TIGR01073 pcrA ATP-dependent D 95.2 0.053 1.1E-06 62.6 8.3 71 130-211 3-73 (726)
272 PRK12724 flagellar biosynthesi 95.2 0.37 8.1E-06 50.5 13.5 129 147-315 224-356 (432)
273 PRK06645 DNA polymerase III su 95.2 0.16 3.4E-06 55.2 11.2 21 147-167 44-64 (507)
274 TIGR02881 spore_V_K stage V sp 95.2 0.14 2.9E-06 51.1 10.0 19 147-165 43-61 (261)
275 PRK06964 DNA polymerase III su 95.0 0.26 5.6E-06 50.7 11.7 40 132-172 2-46 (342)
276 PRK14959 DNA polymerase III su 95.0 0.056 1.2E-06 59.6 7.3 44 259-306 117-160 (624)
277 PRK07003 DNA polymerase III su 95.0 0.084 1.8E-06 59.0 8.5 42 260-305 118-159 (830)
278 PRK00149 dnaA chromosomal repl 95.0 0.2 4.3E-06 54.3 11.4 45 260-306 210-255 (450)
279 PRK14955 DNA polymerase III su 95.0 0.32 7E-06 51.6 12.7 41 259-303 125-165 (397)
280 PRK14962 DNA polymerase III su 95.0 0.094 2E-06 56.6 8.7 42 259-304 115-156 (472)
281 PRK13833 conjugal transfer pro 94.9 0.079 1.7E-06 53.9 7.6 66 122-200 121-187 (323)
282 COG1474 CDC6 Cdc6-related prot 94.9 0.16 3.5E-06 52.9 10.1 46 259-306 121-166 (366)
283 PRK13894 conjugal transfer ATP 94.9 0.068 1.5E-06 54.6 7.2 67 121-200 124-191 (319)
284 CHL00181 cbbX CbbX; Provisiona 94.9 0.32 7E-06 49.0 12.0 21 146-166 59-79 (287)
285 PRK09111 DNA polymerase III su 94.9 0.31 6.8E-06 54.2 12.7 21 147-167 47-67 (598)
286 PLN03025 replication factor C 94.9 0.3 6.5E-06 50.2 11.9 19 147-165 35-53 (319)
287 PRK14963 DNA polymerase III su 94.8 0.094 2E-06 57.1 8.4 41 259-303 114-154 (504)
288 PRK14951 DNA polymerase III su 94.8 0.41 8.9E-06 53.2 13.3 43 260-306 123-165 (618)
289 TIGR00064 ftsY signal recognit 94.8 0.4 8.6E-06 47.9 12.1 57 260-316 153-214 (272)
290 TIGR03877 thermo_KaiC_1 KaiC d 94.8 0.15 3.2E-06 50.0 9.0 54 145-212 20-73 (237)
291 smart00492 HELICc3 helicase su 94.8 0.072 1.6E-06 47.3 6.1 47 392-438 30-79 (141)
292 PRK05563 DNA polymerase III su 94.7 0.089 1.9E-06 58.3 8.0 44 259-306 117-160 (559)
293 PRK08903 DnaA regulatory inact 94.7 0.16 3.5E-06 49.4 9.0 44 261-306 90-133 (227)
294 PRK14087 dnaA chromosomal repl 94.7 0.26 5.6E-06 53.1 11.2 111 147-308 142-253 (450)
295 COG1435 Tdk Thymidine kinase [ 94.7 0.42 9E-06 44.2 10.7 105 147-289 5-109 (201)
296 PRK12402 replication factor C 94.6 0.22 4.7E-06 51.7 10.4 18 148-165 38-55 (337)
297 KOG2036 Predicted P-loop ATPas 94.6 0.74 1.6E-05 50.2 13.9 134 133-305 255-412 (1011)
298 PRK09183 transposase/IS protei 94.6 0.24 5.1E-06 49.2 9.9 23 143-165 99-121 (259)
299 PHA02544 44 clamp loader, smal 94.6 0.13 2.9E-06 52.8 8.5 40 261-303 100-139 (316)
300 PRK14954 DNA polymerase III su 94.6 0.42 9E-06 53.3 12.6 41 259-303 125-165 (620)
301 PRK07940 DNA polymerase III su 94.6 0.18 3.9E-06 53.1 9.4 46 259-308 115-160 (394)
302 PRK06871 DNA polymerase III su 94.5 0.27 5.9E-06 50.2 10.4 36 132-167 3-45 (325)
303 PF13177 DNA_pol3_delta2: DNA 94.5 0.12 2.7E-06 47.1 7.2 43 260-306 101-143 (162)
304 PRK08533 flagellar accessory p 94.5 0.4 8.7E-06 46.6 11.1 55 143-211 21-75 (230)
305 PRK12323 DNA polymerase III su 94.5 0.13 2.8E-06 56.7 8.3 20 148-167 40-59 (700)
306 PRK00411 cdc6 cell division co 94.5 0.17 3.6E-06 53.9 9.2 18 147-164 56-73 (394)
307 smart00491 HELICc2 helicase su 94.4 0.11 2.4E-06 46.2 6.4 42 397-438 32-80 (142)
308 PRK06090 DNA polymerase III su 94.4 0.4 8.7E-06 48.8 11.2 36 131-166 3-45 (319)
309 PHA03368 DNA packaging termina 94.4 0.33 7.1E-06 53.3 11.0 134 147-306 255-392 (738)
310 PF00004 AAA: ATPase family as 94.4 0.39 8.4E-06 41.8 10.0 16 149-164 1-16 (132)
311 PF06745 KaiC: KaiC; InterPro 94.4 0.13 2.8E-06 49.9 7.5 130 145-303 18-159 (226)
312 PRK14088 dnaA chromosomal repl 94.4 0.38 8.3E-06 51.7 11.6 50 261-311 194-244 (440)
313 PHA03333 putative ATPase subun 94.4 0.62 1.3E-05 51.5 13.0 150 131-304 169-332 (752)
314 PRK08699 DNA polymerase III su 94.3 0.3 6.6E-06 50.0 10.2 35 132-166 2-41 (325)
315 TIGR02880 cbbX_cfxQ probable R 94.3 0.33 7.2E-06 48.9 10.4 19 146-164 58-76 (284)
316 TIGR03499 FlhF flagellar biosy 94.3 0.1 2.2E-06 52.5 6.6 23 146-168 194-216 (282)
317 PRK14950 DNA polymerase III su 94.2 0.55 1.2E-05 52.6 12.9 41 259-303 118-158 (585)
318 TIGR00362 DnaA chromosomal rep 94.2 0.35 7.5E-06 51.6 10.9 44 261-306 199-243 (405)
319 TIGR01659 sex-lethal sex-letha 94.1 0.33 7.2E-06 50.1 10.1 68 517-590 194-274 (346)
320 PRK05896 DNA polymerase III su 94.1 0.38 8.2E-06 53.0 10.9 20 147-166 39-58 (605)
321 TIGR03015 pepcterm_ATPase puta 94.1 0.17 3.6E-06 50.7 7.8 34 131-164 23-61 (269)
322 TIGR01648 hnRNP-R-Q heterogene 94.1 0.57 1.2E-05 51.5 12.2 71 516-592 233-308 (578)
323 KOG0991 Replication factor C, 94.1 0.11 2.4E-06 48.9 5.8 31 260-291 112-142 (333)
324 PRK04195 replication factor C 94.1 0.37 8E-06 52.7 10.9 47 106-164 8-57 (482)
325 PRK07994 DNA polymerase III su 94.1 0.33 7.1E-06 54.2 10.5 19 149-167 41-59 (647)
326 PRK14958 DNA polymerase III su 94.1 0.12 2.6E-06 56.5 7.0 19 148-166 40-58 (509)
327 PRK14961 DNA polymerase III su 94.0 0.17 3.7E-06 53.0 7.8 18 148-165 40-57 (363)
328 TIGR02782 TrbB_P P-type conjug 94.0 0.22 4.7E-06 50.5 8.3 67 121-200 108-175 (299)
329 PRK13342 recombination factor 93.9 0.37 7.9E-06 51.5 10.4 38 261-305 92-129 (413)
330 PRK14949 DNA polymerase III su 93.9 0.25 5.5E-06 56.4 9.4 18 149-166 41-58 (944)
331 PRK14960 DNA polymerase III su 93.9 0.16 3.4E-06 56.1 7.5 20 148-167 39-58 (702)
332 KOG0339 ATP-dependent RNA heli 93.9 2.3 5E-05 44.8 15.2 67 363-433 295-376 (731)
333 COG4626 Phage terminase-like p 93.8 0.4 8.6E-06 51.5 10.0 147 131-302 61-223 (546)
334 COG0470 HolB ATPase involved i 93.8 0.82 1.8E-05 47.0 12.5 44 259-306 107-150 (325)
335 PRK14952 DNA polymerase III su 93.8 0.33 7.2E-06 53.7 9.8 19 149-167 38-56 (584)
336 PRK10917 ATP-dependent DNA hel 93.8 0.15 3.2E-06 58.2 7.4 81 353-433 300-389 (681)
337 TIGR00678 holB DNA polymerase 93.7 0.68 1.5E-05 43.4 10.8 41 259-303 94-134 (188)
338 COG4962 CpaF Flp pilus assembl 93.7 0.14 3E-06 51.6 6.1 61 128-202 154-215 (355)
339 PRK09112 DNA polymerase III su 93.7 0.5 1.1E-05 49.0 10.5 43 259-305 139-181 (351)
340 PRK14086 dnaA chromosomal repl 93.6 0.23 5E-06 54.7 8.2 49 259-308 375-424 (617)
341 TIGR01425 SRP54_euk signal rec 93.6 0.85 1.8E-05 48.3 12.1 54 261-316 182-236 (429)
342 PF13173 AAA_14: AAA domain 93.5 0.85 1.9E-05 39.7 10.2 37 261-302 61-97 (128)
343 PTZ00112 origin recognition co 93.4 0.82 1.8E-05 52.0 12.0 28 260-288 868-895 (1164)
344 PRK13341 recombination factor 93.4 0.33 7.1E-06 55.3 9.2 46 261-313 109-154 (725)
345 TIGR00959 ffh signal recogniti 93.4 0.76 1.6E-05 48.9 11.4 22 148-169 101-122 (428)
346 PF05496 RuvB_N: Holliday junc 93.4 0.29 6.2E-06 46.6 7.3 17 148-164 52-68 (233)
347 PTZ00293 thymidine kinase; Pro 93.3 0.53 1.1E-05 44.6 9.0 38 146-196 4-41 (211)
348 PRK07133 DNA polymerase III su 93.3 0.26 5.6E-06 55.4 8.0 44 259-306 116-159 (725)
349 KOG0745 Putative ATP-dependent 93.2 0.095 2.1E-06 53.9 4.1 27 145-173 225-251 (564)
350 TIGR03881 KaiC_arch_4 KaiC dom 93.2 0.93 2E-05 44.0 11.1 53 145-211 19-71 (229)
351 KOG3262 H/ACA small nucleolar 93.2 0.2 4.3E-06 44.8 5.5 45 547-592 89-134 (215)
352 cd00984 DnaB_C DnaB helicase C 93.2 0.72 1.6E-05 45.2 10.4 30 144-173 11-40 (242)
353 PRK14965 DNA polymerase III su 93.1 0.57 1.2E-05 52.2 10.4 18 148-165 40-57 (576)
354 PRK08691 DNA polymerase III su 93.0 0.23 4.9E-06 55.4 7.1 21 147-167 39-59 (709)
355 PRK07471 DNA polymerase III su 93.0 0.79 1.7E-05 47.8 10.8 24 148-172 43-66 (365)
356 TIGR02928 orc1/cdc6 family rep 93.0 0.42 9.1E-06 50.2 9.0 17 147-163 41-57 (365)
357 KOG0383 Predicted helicase [Ge 93.0 0.012 2.7E-07 64.9 -2.7 74 349-422 616-696 (696)
358 PRK05986 cob(I)alamin adenolsy 93.0 1.7 3.6E-05 40.5 11.6 147 144-314 20-168 (191)
359 PRK10416 signal recognition pa 93.0 2 4.4E-05 43.9 13.4 57 260-316 195-256 (318)
360 PRK07993 DNA polymerase III su 92.9 0.44 9.4E-06 49.1 8.6 35 132-166 3-44 (334)
361 PRK08939 primosomal protein Dn 92.9 0.59 1.3E-05 47.5 9.4 19 146-164 156-174 (306)
362 PRK07399 DNA polymerase III su 92.9 0.65 1.4E-05 47.4 9.7 57 240-301 104-160 (314)
363 PRK14948 DNA polymerase III su 92.9 0.43 9.3E-06 53.5 9.0 20 147-166 39-58 (620)
364 cd03115 SRP The signal recogni 92.8 1.7 3.6E-05 40.1 11.8 55 260-316 81-136 (173)
365 KOG1513 Nuclear helicase MOP-3 92.8 0.45 9.8E-06 52.5 8.6 153 130-303 263-453 (1300)
366 PRK05580 primosome assembly pr 92.8 0.39 8.4E-06 54.7 8.7 89 346-435 172-266 (679)
367 PRK11823 DNA repair protein Ra 92.8 0.72 1.6E-05 49.6 10.3 89 145-275 79-170 (446)
368 PF07728 AAA_5: AAA domain (dy 92.7 0.036 7.9E-07 49.2 0.4 16 148-163 1-16 (139)
369 KOG0344 ATP-dependent RNA heli 92.7 1.9 4.2E-05 46.3 13.0 98 154-271 365-466 (593)
370 PRK06067 flagellar accessory p 92.7 1.9 4.2E-05 42.0 12.5 53 145-211 24-76 (234)
371 PRK06904 replicative DNA helic 92.7 1.1 2.4E-05 48.5 11.7 120 139-274 214-347 (472)
372 PF01695 IstB_IS21: IstB-like 92.7 0.27 5.9E-06 45.6 6.1 48 143-204 44-91 (178)
373 PRK04328 hypothetical protein; 92.6 0.82 1.8E-05 45.1 9.8 54 145-212 22-75 (249)
374 cd00561 CobA_CobO_BtuR ATP:cor 92.6 1.9 4.1E-05 39.0 11.1 53 259-313 93-147 (159)
375 cd01126 TraG_VirD4 The TraG/Tr 92.6 0.15 3.3E-06 54.0 4.9 47 148-209 1-47 (384)
376 TIGR00595 priA primosomal prot 92.5 0.27 5.9E-06 53.7 6.8 85 348-433 9-99 (505)
377 COG2256 MGS1 ATPase related to 92.4 0.44 9.6E-06 48.9 7.5 36 263-305 106-141 (436)
378 PF02534 T4SS-DNA_transf: Type 92.4 0.21 4.5E-06 54.6 5.7 50 147-211 45-94 (469)
379 PRK14957 DNA polymerase III su 92.3 0.51 1.1E-05 51.7 8.6 20 148-167 40-59 (546)
380 PF03969 AFG1_ATPase: AFG1-lik 92.3 2.5 5.5E-05 44.0 13.2 111 146-308 62-172 (362)
381 COG2804 PulE Type II secretory 92.2 0.22 4.9E-06 52.8 5.4 41 133-174 243-285 (500)
382 TIGR00643 recG ATP-dependent D 92.2 0.29 6.2E-06 55.4 6.7 81 353-433 274-363 (630)
383 KOG0116 RasGAP SH3 binding pro 92.2 0.99 2.1E-05 47.4 10.0 47 519-567 291-339 (419)
384 PRK13851 type IV secretion sys 92.1 0.21 4.5E-06 51.5 5.0 45 142-200 158-202 (344)
385 TIGR00580 mfd transcription-re 92.0 0.28 6E-06 57.4 6.4 78 356-433 493-579 (926)
386 PRK00440 rfc replication facto 91.9 1.9 4.1E-05 44.2 12.1 17 148-164 40-56 (319)
387 KOG0742 AAA+-type ATPase [Post 91.9 1.1 2.4E-05 46.0 9.5 17 147-163 385-401 (630)
388 PRK10867 signal recognition pa 91.9 1.2 2.6E-05 47.5 10.4 21 148-168 102-122 (433)
389 cd01121 Sms Sms (bacterial rad 91.8 1.3 2.8E-05 46.3 10.5 91 145-274 81-171 (372)
390 COG2805 PilT Tfp pilus assembl 91.8 0.43 9.4E-06 47.0 6.4 27 148-175 127-153 (353)
391 TIGR00708 cobA cob(I)alamin ad 91.7 2.2 4.7E-05 39.2 10.6 53 259-313 95-149 (173)
392 PRK13900 type IV secretion sys 91.7 0.44 9.5E-06 49.0 6.8 44 143-200 157-200 (332)
393 PRK14971 DNA polymerase III su 91.7 0.97 2.1E-05 50.7 10.0 43 259-305 119-161 (614)
394 PRK14953 DNA polymerase III su 91.7 1.5 3.2E-05 47.7 11.2 40 532-571 390-429 (486)
395 PRK06647 DNA polymerase III su 91.7 0.92 2E-05 50.2 9.7 43 259-305 117-159 (563)
396 PRK14969 DNA polymerase III su 91.6 0.61 1.3E-05 51.3 8.2 20 148-167 40-59 (527)
397 PRK13897 type IV secretion sys 91.5 0.34 7.4E-06 53.8 6.2 49 147-210 159-207 (606)
398 PRK06305 DNA polymerase III su 91.3 1.5 3.1E-05 47.4 10.6 20 147-166 40-59 (451)
399 PRK10689 transcription-repair 91.2 1.9 4.1E-05 52.0 12.3 91 187-289 809-903 (1147)
400 KOG0741 AAA+-type ATPase [Post 91.2 2.8 6.1E-05 44.7 11.9 69 113-196 493-573 (744)
401 COG2909 MalT ATP-dependent tra 91.1 0.46 1E-05 53.3 6.5 45 260-306 128-172 (894)
402 TIGR03878 thermo_KaiC_2 KaiC d 91.1 1.2 2.5E-05 44.3 8.9 29 145-173 35-63 (259)
403 PHA03372 DNA packaging termina 91.1 2.8 6.1E-05 45.8 12.1 128 147-304 203-337 (668)
404 PRK11034 clpA ATP-dependent Cl 91.1 1.1 2.4E-05 51.3 9.8 19 146-164 207-225 (758)
405 cd01130 VirB11-like_ATPase Typ 91.1 0.3 6.5E-06 45.8 4.6 33 131-163 9-42 (186)
406 KOG1133 Helicase of the DEAD s 90.8 0.33 7.2E-06 52.9 5.0 42 131-172 15-60 (821)
407 PRK08506 replicative DNA helic 90.8 1.3 2.8E-05 48.1 9.7 115 143-274 189-315 (472)
408 PHA00729 NTP-binding motif con 90.8 2.2 4.7E-05 41.0 10.0 16 148-163 19-34 (226)
409 TIGR03600 phage_DnaB phage rep 90.8 1.2 2.7E-05 47.7 9.5 43 128-170 176-218 (421)
410 COG1484 DnaC DNA replication p 90.8 0.56 1.2E-05 46.3 6.3 50 145-208 104-153 (254)
411 PF05729 NACHT: NACHT domain 90.7 1.9 4.2E-05 39.0 9.6 25 148-173 2-26 (166)
412 PRK14873 primosome assembly pr 90.3 0.79 1.7E-05 51.7 7.7 88 346-434 170-264 (665)
413 KOG0739 AAA+-type ATPase [Post 90.1 3.3 7.1E-05 40.9 10.5 116 140-311 155-284 (439)
414 PRK08451 DNA polymerase III su 90.0 1.3 2.9E-05 48.3 8.9 19 148-166 38-56 (535)
415 KOG0744 AAA+-type ATPase [Post 90.0 2 4.4E-05 42.8 9.1 110 146-274 177-322 (423)
416 PF01443 Viral_helicase1: Vira 89.9 0.3 6.5E-06 47.6 3.5 23 413-435 184-206 (234)
417 PRK05973 replicative DNA helic 89.8 0.69 1.5E-05 44.9 5.9 83 114-211 23-115 (237)
418 TIGR00767 rho transcription te 89.8 0.85 1.8E-05 47.6 6.8 20 144-163 166-185 (415)
419 TIGR00631 uvrb excinuclease AB 89.7 4.6 9.9E-05 45.7 13.1 118 187-314 442-563 (655)
420 COG1219 ClpX ATP-dependent pro 89.7 0.22 4.8E-06 49.3 2.3 28 144-173 95-122 (408)
421 TIGR02397 dnaX_nterm DNA polym 89.6 1.8 3.9E-05 45.2 9.4 25 147-172 37-61 (355)
422 PF03796 DnaB_C: DnaB-like hel 89.6 0.9 1.9E-05 45.1 6.8 143 145-303 18-179 (259)
423 PRK08058 DNA polymerase III su 89.6 3.2 7E-05 42.8 11.0 42 259-304 108-149 (329)
424 PRK14970 DNA polymerase III su 89.6 1.7 3.7E-05 45.7 9.3 41 259-303 106-146 (367)
425 PRK05748 replicative DNA helic 89.6 2.3 4.9E-05 46.0 10.3 145 143-303 200-364 (448)
426 PRK13850 type IV secretion sys 89.5 0.6 1.3E-05 52.5 6.0 49 147-210 140-188 (670)
427 PF06733 DEAD_2: DEAD_2; Inte 89.5 0.21 4.6E-06 46.2 2.1 44 232-275 114-159 (174)
428 PRK08840 replicative DNA helic 89.4 3.1 6.7E-05 45.0 11.0 37 128-164 199-235 (464)
429 TIGR00665 DnaB replicative DNA 89.3 2.1 4.6E-05 46.1 9.9 144 143-303 192-354 (434)
430 cd01125 repA Hexameric Replica 89.2 4.2 9.1E-05 39.7 11.1 22 148-169 3-24 (239)
431 COG1110 Reverse gyrase [DNA re 89.1 0.67 1.5E-05 53.0 5.8 59 362-420 124-192 (1187)
432 TIGR03819 heli_sec_ATPase heli 88.9 0.92 2E-05 46.9 6.4 64 121-200 154-218 (340)
433 TIGR02655 circ_KaiC circadian 88.8 3 6.5E-05 45.5 10.7 60 138-211 250-314 (484)
434 PRK03992 proteasome-activating 88.8 1.6 3.4E-05 46.2 8.3 17 147-163 166-182 (389)
435 PRK07004 replicative DNA helic 88.7 1.9 4.2E-05 46.6 8.9 26 143-168 210-235 (460)
436 COG2109 BtuR ATP:corrinoid ade 88.6 5.6 0.00012 36.6 10.3 53 260-315 121-176 (198)
437 COG1198 PriA Primosomal protei 88.3 1.1 2.3E-05 50.7 6.8 90 343-433 224-319 (730)
438 KOG1513 Nuclear helicase MOP-3 88.2 0.6 1.3E-05 51.6 4.5 80 402-481 850-939 (1300)
439 TIGR02012 tigrfam_recA protein 88.1 0.87 1.9E-05 46.4 5.4 28 145-172 54-81 (321)
440 PRK08760 replicative DNA helic 88.1 2.8 6.1E-05 45.5 9.7 114 144-274 227-352 (476)
441 KOG0333 U5 snRNP-like RNA heli 88.1 2.6 5.7E-05 44.7 8.8 70 187-266 517-590 (673)
442 cd01394 radB RadB. The archaea 88.0 1.7 3.7E-05 41.8 7.4 26 146-171 19-44 (218)
443 TIGR02868 CydC thiol reductant 88.0 1.3 2.7E-05 49.3 7.2 19 144-162 359-377 (529)
444 cd03239 ABC_SMC_head The struc 87.9 0.59 1.3E-05 43.4 3.9 43 259-302 114-156 (178)
445 COG1618 Predicted nucleotide k 87.8 0.37 8.1E-06 42.9 2.3 117 147-288 6-129 (179)
446 COG0552 FtsY Signal recognitio 87.8 6.3 0.00014 39.8 11.1 132 148-316 141-281 (340)
447 PF03237 Terminase_6: Terminas 87.7 6.6 0.00014 41.0 12.3 142 150-316 1-151 (384)
448 KOG0732 AAA+-type ATPase conta 87.6 1.3 2.8E-05 51.4 7.0 63 241-304 344-414 (1080)
449 PRK13822 conjugal transfer cou 87.6 0.97 2.1E-05 50.7 6.0 50 146-210 224-273 (641)
450 PF00437 T2SE: Type II/IV secr 87.6 0.71 1.5E-05 46.2 4.5 53 135-200 115-168 (270)
451 PRK04841 transcriptional regul 87.6 2.7 5.9E-05 50.1 10.3 45 260-306 120-164 (903)
452 COG0630 VirB11 Type IV secreto 87.4 1.1 2.3E-05 45.8 5.7 58 129-200 125-183 (312)
453 COG1122 CbiO ABC-type cobalt t 87.3 1.7 3.6E-05 42.3 6.7 31 261-291 156-186 (235)
454 KOG2170 ATPase of the AAA+ sup 87.3 4.8 0.0001 39.9 9.7 55 261-316 178-237 (344)
455 PHA00350 putative assembly pro 87.3 2.1 4.6E-05 44.8 7.8 26 149-174 4-30 (399)
456 PRK13876 conjugal transfer cou 87.3 0.66 1.4E-05 52.2 4.4 50 146-210 144-193 (663)
457 PRK13764 ATPase; Provisional 87.2 1.2 2.6E-05 49.3 6.3 27 145-172 256-282 (602)
458 TIGR00602 rad24 checkpoint pro 87.2 3 6.6E-05 46.7 9.4 49 105-164 77-128 (637)
459 PRK13880 conjugal transfer cou 87.2 0.96 2.1E-05 50.9 5.6 46 147-207 176-221 (636)
460 KOG0331 ATP-dependent RNA heli 87.1 3.1 6.6E-05 44.9 9.0 72 186-267 340-415 (519)
461 PRK04537 ATP-dependent RNA hel 87.1 3.7 8E-05 45.9 10.2 71 188-268 258-332 (572)
462 cd01129 PulE-GspE PulE/GspE Th 87.0 1.2 2.6E-05 44.2 5.7 46 123-172 58-105 (264)
463 COG2255 RuvB Holliday junction 87.0 1.5 3.3E-05 43.0 6.0 19 147-165 53-71 (332)
464 KOG2028 ATPase related to the 86.9 2.1 4.6E-05 43.4 7.1 108 147-316 163-270 (554)
465 TIGR00635 ruvB Holliday juncti 86.9 0.99 2.1E-05 46.0 5.2 17 147-163 31-47 (305)
466 COG3972 Superfamily I DNA and 86.9 1.9 4.2E-05 45.4 7.1 150 120-283 152-316 (660)
467 PRK08006 replicative DNA helic 86.9 6.1 0.00013 42.9 11.4 145 142-301 220-383 (471)
468 TIGR02639 ClpA ATP-dependent C 86.8 8.3 0.00018 44.6 13.2 20 146-165 203-222 (731)
469 KOG0738 AAA+-type ATPase [Post 86.7 5.8 0.00013 40.8 10.1 55 108-162 182-261 (491)
470 PRK09087 hypothetical protein; 86.7 2 4.4E-05 41.6 6.9 39 264-306 90-128 (226)
471 PF02572 CobA_CobO_BtuR: ATP:c 86.7 11 0.00024 34.6 11.2 53 259-313 94-148 (172)
472 TIGR03346 chaperone_ClpB ATP-d 86.3 5.9 0.00013 46.6 11.7 18 147-164 195-212 (852)
473 cd00267 ABC_ATPase ABC (ATP-bi 86.3 1.6 3.4E-05 39.5 5.7 42 260-303 97-138 (157)
474 TIGR02767 TraG-Ti Ti-type conj 86.1 0.87 1.9E-05 50.8 4.5 49 147-210 212-260 (623)
475 TIGR02525 plasmid_TraJ plasmid 86.1 2.1 4.5E-05 44.7 7.1 27 145-172 148-174 (372)
476 PF01637 Arch_ATPase: Archaeal 86.0 0.55 1.2E-05 45.4 2.7 57 243-304 104-165 (234)
477 TIGR03345 VI_ClpV1 type VI sec 85.9 3.8 8.1E-05 48.0 9.8 17 148-164 598-614 (852)
478 cd00983 recA RecA is a bacter 85.9 1 2.3E-05 45.8 4.6 44 145-201 54-97 (325)
479 KOG2228 Origin recognition com 85.9 11 0.00023 38.2 11.3 56 248-304 124-179 (408)
480 COG3267 ExeA Type II secretory 85.9 3.8 8.3E-05 39.7 8.0 32 141-173 45-77 (269)
481 PLN03187 meiotic recombination 85.9 4 8.7E-05 42.1 8.9 22 147-168 127-148 (344)
482 KOG0058 Peptide exporter, ABC 85.8 4.7 0.0001 44.9 9.8 144 143-302 491-660 (716)
483 PF12846 AAA_10: AAA-like doma 85.7 1.1 2.4E-05 45.4 4.9 43 146-201 1-43 (304)
484 KOG2543 Origin recognition com 85.7 6.4 0.00014 40.4 9.8 47 260-308 114-162 (438)
485 PRK05917 DNA polymerase III su 85.6 8.3 0.00018 38.7 10.7 43 259-305 93-135 (290)
486 PRK10436 hypothetical protein; 85.6 0.99 2.1E-05 48.6 4.5 46 123-172 196-243 (462)
487 PF05918 API5: Apoptosis inhib 85.6 0.25 5.4E-06 53.6 0.0 23 265-287 178-200 (556)
488 PRK09165 replicative DNA helic 85.5 5.4 0.00012 43.6 10.3 125 145-274 216-354 (497)
489 cd01393 recA_like RecA is a b 85.3 2.6 5.5E-05 40.8 7.0 27 145-171 18-44 (226)
490 PRK00080 ruvB Holliday junctio 85.3 1.4 3E-05 45.5 5.4 18 147-164 52-69 (328)
491 TIGR00763 lon ATP-dependent pr 85.1 2.9 6.4E-05 48.6 8.4 18 146-163 347-364 (775)
492 TIGR02524 dot_icm_DotB Dot/Icm 85.1 1.1 2.4E-05 46.7 4.4 27 145-172 133-159 (358)
493 cd03221 ABCF_EF-3 ABCF_EF-3 E 84.8 3.3 7.2E-05 36.8 6.9 31 259-289 86-116 (144)
494 cd03276 ABC_SMC6_euk Eukaryoti 84.8 7.6 0.00016 36.7 9.7 48 259-306 129-177 (198)
495 cd03247 ABCC_cytochrome_bd The 84.7 3.6 7.7E-05 38.1 7.4 130 143-301 25-154 (178)
496 PHA00012 I assembly protein 84.6 7.7 0.00017 39.2 9.8 115 150-301 5-125 (361)
497 TIGR01243 CDC48 AAA family ATP 84.5 5 0.00011 46.5 9.9 97 146-307 212-325 (733)
498 PRK09354 recA recombinase A; P 84.4 1.5 3.3E-05 45.1 5.0 87 143-268 57-145 (349)
499 PRK09376 rho transcription ter 84.4 1.8 3.9E-05 45.0 5.6 107 139-273 162-268 (416)
500 KOG0105 Alternative splicing f 84.4 3.2 6.9E-05 37.5 6.3 73 545-630 29-109 (241)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-77 Score=611.64 Aligned_cols=351 Identities=45% Similarity=0.702 Sum_probs=327.8
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 006272 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (652)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (652)
.|+.++|++.+...|+..||+.|||||.++||.++.|+|+++.|.|||||||+|+||++.++.+.... .....+|+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~----~~~~~~P~ 167 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGK----LSRGDGPI 167 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcccc----ccCCCCCe
Confidence 89999999999999999999999999999999999999999999999999999999999999874221 23467899
Q ss_pred EEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCc
Q 006272 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (652)
Q Consensus 190 ~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDE 269 (652)
+|||+||||||.||..++..++....+++.|+|||.+...|...+..+++|+|+|||||+++++.+.++|+++.|+|+||
T Consensus 168 vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 168 VLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDE 247 (519)
T ss_pred EEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhh
Q 006272 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349 (652)
Q Consensus 270 ah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (652)
||+|+++||.+++..|+..++.. ..|++++|||.|.++..++..|+. ++..+.+..........++.|+...|....|
T Consensus 248 ADrMldmGFe~qI~~Il~~i~~~-~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~~~~K 325 (519)
T KOG0331|consen 248 ADRMLDMGFEPQIRKILSQIPRP-DRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCDETAK 325 (519)
T ss_pred HHhhhccccHHHHHHHHHhcCCC-cccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcCHHHH
Confidence 99999999999999999999653 449999999999999999999996 8888888877667888899999999999999
Q ss_pred hhhHHHHHHhhC--CCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCC
Q 006272 350 SQVIPDIIRCYS--SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (652)
Q Consensus 350 ~~~l~~ll~~~~--~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gl 423 (652)
...|..+|..+. ..+++||||+|++.|++|+..|+ .+..|||+++|.+|+.+|+.|++|++.||||||+|+|||
T Consensus 326 ~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGL 405 (519)
T KOG0331|consen 326 LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGL 405 (519)
T ss_pred HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccC
Confidence 999999998874 66799999999999999999998 577999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCC
Q 006272 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD 466 (652)
Q Consensus 424 di~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~ 466 (652)
|+|+|++|||||+|.++++|+||+|||||+|..+....++...
T Consensus 406 Di~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~ 448 (519)
T KOG0331|consen 406 DVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSD 448 (519)
T ss_pred CCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHH
Confidence 9999999999999999999999999999999887765554443
No 2
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.2e-73 Score=626.44 Aligned_cols=463 Identities=32% Similarity=0.505 Sum_probs=383.0
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
...|.+|+|++.++++|.++||.+|||+|.++||.++.++|+|++||||||||++|++|+++.+... ...
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~----------~~~ 74 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE----------LKA 74 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc----------cCC
Confidence 3469999999999999999999999999999999999999999999999999999999999988643 234
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEe
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lV 266 (652)
+++|||+|||+||.|+++.+..+.... ++.+..++|+.++..+...+..+++|||+||++|++++.++.+.++++++||
T Consensus 75 ~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lV 154 (629)
T PRK11634 75 PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLV 154 (629)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEE
Confidence 689999999999999999999987664 7999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCc
Q 006272 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (652)
Q Consensus 267 iDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (652)
|||||+|++++|..++..|+..++. ..|+++||||+|..+..+...++ .++..+.+... ......+.+.++.+..
T Consensus 155 lDEAd~ml~~gf~~di~~Il~~lp~--~~q~llfSAT~p~~i~~i~~~~l-~~~~~i~i~~~--~~~~~~i~q~~~~v~~ 229 (629)
T PRK11634 155 LDEADEMLRMGFIEDVETIMAQIPE--GHQTALFSATMPEAIRRITRRFM-KEPQEVRIQSS--VTTRPDISQSYWTVWG 229 (629)
T ss_pred eccHHHHhhcccHHHHHHHHHhCCC--CCeEEEEEccCChhHHHHHHHHc-CCCeEEEccCc--cccCCceEEEEEEech
Confidence 9999999999999999999999987 78999999999999999999998 55666655433 2445567788877777
Q ss_pred hhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccC
Q 006272 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (652)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 422 (652)
..+...|..++... ...++||||+|+..+..|+..|. .+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 230 ~~k~~~L~~~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arG 308 (629)
T PRK11634 230 MRKNEALVRFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARG 308 (629)
T ss_pred hhHHHHHHHHHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcC
Confidence 78888888888765 45789999999999999999987 57889999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCc-----------------------------------
Q 006272 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDS----------------------------------- 467 (652)
Q Consensus 423 ldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~----------------------------------- 467 (652)
||+|+|++|||||+|.++++|+||+|||||+|..+.++++....+
T Consensus 309 IDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~~~~~~~~~~ 388 (629)
T PRK11634 309 LDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFA 388 (629)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998776555433211
Q ss_pred ----------chHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHhCCccc-----c---------ccc------------
Q 006272 468 ----------VIPAFKSAAEELLNN---SGLSAAELLAKALAKAVGYTEI-----K---------SRS------------ 508 (652)
Q Consensus 468 ----------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~---------~~~------------ 508 (652)
.+..|...+.+++.. .+++..++.++.+....+.... . .+.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (629)
T PRK11634 389 AKVQQQLESSDLDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGP 468 (629)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccccccc
Confidence 011122222222221 1345544433333333332110 0 000
Q ss_pred -----cc--c---cCCCcEEEEEecCCC-ccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecChhhHHHHHhhc
Q 006272 509 -----LL--S---SLEDHVTVVLEAGKP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGA 577 (652)
Q Consensus 509 -----~~--~---~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~~~a~~~~~~~ 577 (652)
.. . ..+++++++|+.|++ ...|..++++|++..+... ..|++|++.+ .+++|++|.+.+..++..+
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ig~i~i~~--~~s~v~~~~~~~~~~~~~~ 545 (629)
T PRK11634 469 RGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISS-RYIGNIKLFA--SHSTIELPKGMPGEVLQHF 545 (629)
T ss_pred ccccccccccccccCCCCEEEEEecccccCCCHHHHHHHHHhhcCCCh-hhCCcEEEeC--CceEEEcChhhHHHHHHHh
Confidence 00 0 122588999999999 7899999999999877654 7999999999 8999999999999999888
Q ss_pred c----CCCceeeeecc
Q 006272 578 D----NAANVSLEVLK 589 (652)
Q Consensus 578 ~----~~~~i~l~~~~ 589 (652)
. .++.+.++.+.
T Consensus 546 ~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 546 TRTRILNKPMNMQLLG 561 (629)
T ss_pred ccccccCCceEEEECC
Confidence 5 56777777764
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-75 Score=561.97 Aligned_cols=353 Identities=35% Similarity=0.528 Sum_probs=323.9
Q ss_pred CCCCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCC
Q 006272 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183 (652)
Q Consensus 104 ~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~ 183 (652)
..+...+|.++++.+.+.+++...||..||+||.++||.++.|+|||+.|.||||||.+|+|||+++|+..+
T Consensus 56 ~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-------- 127 (476)
T KOG0330|consen 56 TDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP-------- 127 (476)
T ss_pred hhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC--------
Confidence 345567899999999999999999999999999999999999999999999999999999999999999854
Q ss_pred CCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHH-hCCcCCCCc
Q 006272 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE-RGNIDLSSL 262 (652)
Q Consensus 184 ~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~-~~~~~l~~~ 262 (652)
..+++|||+||||||.||.+.|+.++..+++.++++.||.....|...+.+.++|+|+|||||++|+. .+.+.+..+
T Consensus 128 --~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~l 205 (476)
T KOG0330|consen 128 --KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQL 205 (476)
T ss_pred --CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHh
Confidence 34789999999999999999999999999999999999999999999999999999999999999998 578999999
Q ss_pred eEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEc
Q 006272 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (652)
Q Consensus 263 ~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (652)
+++|+||||+++++.|.+.+..|+..+|. .+|+++||||||..+.++....+ .++..+.. ..+..+..++.|.|+
T Consensus 206 k~LVlDEADrlLd~dF~~~ld~ILk~ip~--erqt~LfsATMt~kv~kL~rasl-~~p~~v~~--s~ky~tv~~lkQ~yl 280 (476)
T KOG0330|consen 206 KFLVLDEADRLLDMDFEEELDYILKVIPR--ERQTFLFSATMTKKVRKLQRASL-DNPVKVAV--SSKYQTVDHLKQTYL 280 (476)
T ss_pred HHHhhchHHhhhhhhhHHHHHHHHHhcCc--cceEEEEEeecchhhHHHHhhcc-CCCeEEec--cchhcchHHhhhheE
Confidence 99999999999999999999999999997 89999999999999999987766 55555554 455678889999999
Q ss_pred cCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccc
Q 006272 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418 (652)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~ 418 (652)
.++...|...|..|+... .+.++||||+|...+++++-.|+ .+..|||+|+|..|.-.++.|++|.+.||||||+
T Consensus 281 fv~~k~K~~yLV~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDV 359 (476)
T KOG0330|consen 281 FVPGKDKDTYLVYLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDV 359 (476)
T ss_pred eccccccchhHHHHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecch
Confidence 999999999999999877 56899999999999999999987 6778999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHH
Q 006272 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFK 473 (652)
Q Consensus 419 ~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~ 473 (652)
++||||+|.|++|||||+|.+..+||||+|||||+|..| ..|.++..-+++.|.
T Consensus 360 aSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG-~~ItlVtqyDve~~q 413 (476)
T KOG0330|consen 360 ASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSG-KAITLVTQYDVELVQ 413 (476)
T ss_pred hcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCc-ceEEEEehhhhHHHH
Confidence 999999999999999999999999999999999999654 455666655555444
No 4
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-74 Score=566.31 Aligned_cols=356 Identities=37% Similarity=0.510 Sum_probs=318.0
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
..+|.+++||.+|++++..+||..|||||..+||..+-|+|++.||.||||||.||++|+|++|+-.+.+ ...
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-------~~~ 252 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-------VAA 252 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-------Ccc
Confidence 3479999999999999999999999999999999999999999999999999999999999999876543 345
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCcCCCCceEEe
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLKFRV 266 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~-~~~~l~~~~~lV 266 (652)
.|+||||||||||.|++...+.++.++.+.++...||.+...|...|+..|||||+|||||++||.+ ..|++++|.++|
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLv 332 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLV 332 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999987 578999999999
Q ss_pred cCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCC-
Q 006272 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS- 345 (652)
Q Consensus 267 iDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~- 345 (652)
+||||+||+.+|.+++..|+..|+. ++|++||||||+..+..++...+ +.|..|.+..+. .+...+.|.++...
T Consensus 333 lDEADRMLeegFademnEii~lcpk--~RQTmLFSATMteeVkdL~slSL-~kPvrifvd~~~--~~a~~LtQEFiRIR~ 407 (691)
T KOG0338|consen 333 LDEADRMLEEGFADEMNEIIRLCPK--NRQTMLFSATMTEEVKDLASLSL-NKPVRIFVDPNK--DTAPKLTQEFIRIRP 407 (691)
T ss_pred echHHHHHHHHHHHHHHHHHHhccc--cccceeehhhhHHHHHHHHHhhc-CCCeEEEeCCcc--ccchhhhHHHheecc
Confidence 9999999999999999999999998 89999999999999999999998 566767665443 55667777776543
Q ss_pred --chhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEcccc
Q 006272 346 --SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (652)
Q Consensus 346 --~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~ 419 (652)
...+..++..++... ...++|||+.|++.|++|.-+|- .+.-+||.|+|.+|...++.|++.++.||||||++
T Consensus 408 ~re~dRea~l~~l~~rt-f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvA 486 (691)
T KOG0338|consen 408 KREGDREAMLASLITRT-FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVA 486 (691)
T ss_pred ccccccHHHHHHHHHHh-cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechh
Confidence 345666777777766 46899999999999999988775 78899999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHH
Q 006272 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAE 477 (652)
Q Consensus 420 ~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~ 477 (652)
+|||||++|..||||++|.+.+.|+||+|||+|+|..|.. |.++.+.+...++.++.
T Consensus 487 sRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrs-VtlvgE~dRkllK~iik 543 (691)
T KOG0338|consen 487 SRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRS-VTLVGESDRKLLKEIIK 543 (691)
T ss_pred hccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcce-EEEeccccHHHHHHHHh
Confidence 9999999999999999999999999999999999987654 56666665554444443
No 5
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.2e-70 Score=544.58 Aligned_cols=358 Identities=34% Similarity=0.470 Sum_probs=329.8
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
...|..+.|++...++++++||+.+|++|+.+|+.++.|+|+++.|.||||||+||+||+++.+....... ..+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~------r~~ 154 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP------RNG 154 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC------CCC
Confidence 34578889999999999999999999999999999999999999999999999999999999998876543 245
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhC-CcCCCCceEE
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFR 265 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-~~~l~~~~~l 265 (652)
..+||||||||||.|++.+++.+..+. ++.+..+.||.........+..+++|+|+|||||++|+++. .+...+++++
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 579999999999999999999999887 89999999999999999999999999999999999999884 4667788999
Q ss_pred ecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCC
Q 006272 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (652)
Q Consensus 266 ViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 345 (652)
|+||||+++++||.++++.|+..++. .+|+++||||+|+.|.+++...+..++..++++......++..+.|.|+.++
T Consensus 235 vlDEADrlLd~GF~~di~~Ii~~lpk--~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~ 312 (543)
T KOG0342|consen 235 VLDEADRLLDIGFEEDVEQIIKILPK--QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAP 312 (543)
T ss_pred EeecchhhhhcccHHHHHHHHHhccc--cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecc
Confidence 99999999999999999999999997 8899999999999999999999988999999999988999999999999999
Q ss_pred chhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEcccccc
Q 006272 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (652)
Q Consensus 346 ~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 421 (652)
...++.++..+++......++||||+|...+..+++.|. .|..+||+++|..|..+..+|++.+.-|||||||+||
T Consensus 313 ~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaAR 392 (543)
T KOG0342|consen 313 SDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAAR 392 (543)
T ss_pred ccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhc
Confidence 999999999999888666999999999999999999998 7889999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHH
Q 006272 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS 474 (652)
Q Consensus 422 Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~ 474 (652)
|+|+|+|++||+||+|.++++||||+|||||.|+.|..++++ .+.++.++..
T Consensus 393 GlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l-~p~El~Flr~ 444 (543)
T KOG0342|consen 393 GLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLL-APWELGFLRY 444 (543)
T ss_pred cCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEe-ChhHHHHHHH
Confidence 999999999999999999999999999999999887765554 4444544443
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-69 Score=585.26 Aligned_cols=353 Identities=38% Similarity=0.632 Sum_probs=320.2
Q ss_pred CcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCC
Q 006272 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (652)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (652)
..|++|+|++.++++|.+.||..|||||.++||.++.|+|++++|+||||||+||++|+++.+..... ...+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~--------~~~~ 100 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE--------RKYV 100 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc--------cCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999764210 1111
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEec
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lVi 267 (652)
.+||++||||||.|+++++..++.+. ++.+.+++||.++..|...+..+++|||+|||||++|+.++.++++.+.++|+
T Consensus 101 ~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 101 SALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred ceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 29999999999999999999999988 79999999999999999999989999999999999999999999999999999
Q ss_pred CcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCch
Q 006272 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (652)
Q Consensus 268 DEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (652)
||||+|+++||.+++..|+..++. ..|+++||||+|..+..++..++. ++..+.+.......+...+.|.++.+...
T Consensus 181 DEADrmLd~Gf~~~i~~I~~~~p~--~~qtllfSAT~~~~i~~l~~~~l~-~p~~i~v~~~~~~~~~~~i~q~~~~v~~~ 257 (513)
T COG0513 181 DEADRMLDMGFIDDIEKILKALPP--DRQTLLFSATMPDDIRELARRYLN-DPVEIEVSVEKLERTLKKIKQFYLEVESE 257 (513)
T ss_pred ccHhhhhcCCCHHHHHHHHHhCCc--ccEEEEEecCCCHHHHHHHHHHcc-CCcEEEEccccccccccCceEEEEEeCCH
Confidence 999999999999999999999988 789999999999999999999995 77777776455445788999999999987
Q ss_pred h-hhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccC
Q 006272 348 A-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (652)
Q Consensus 348 ~-~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 422 (652)
. +...|..++.... ..++||||+|+..|+.|+..|. .+..|||+|+|.+|.++++.|++|..+||||||+++||
T Consensus 258 ~~k~~~L~~ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRG 336 (513)
T COG0513 258 EEKLELLLKLLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARG 336 (513)
T ss_pred HHHHHHHHHHHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhcc
Confidence 6 9999999998874 4589999999999999999887 68899999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHH
Q 006272 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFK 473 (652)
Q Consensus 423 ldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~ 473 (652)
||||+|++|||||+|.+++.|+||+|||||+|..|..+.+..+..+...+.
T Consensus 337 iDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~ 387 (513)
T COG0513 337 LDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLK 387 (513)
T ss_pred CCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHH
Confidence 999999999999999999999999999999998876544444422444443
No 7
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-69 Score=535.23 Aligned_cols=353 Identities=30% Similarity=0.433 Sum_probs=328.4
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCC
Q 006272 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (652)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 184 (652)
...+..|.+|+|+..+.+.|+..+|..||.||..+||.+|.|+|||..|.|||||||||++|+|++|+...|..
T Consensus 65 ~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~------ 138 (758)
T KOG0343|consen 65 STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP------ 138 (758)
T ss_pred hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC------
Confidence 34556799999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCcCCCCce
Q 006272 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLK 263 (652)
Q Consensus 185 ~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~-~~~~l~~~~ 263 (652)
..+.-||||+||||||.|+++.+.+++.+..+++..++||.........+.. .+|+|||||||+.||.. -.++.+++.
T Consensus 139 ~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~-mNILVCTPGRLLQHmde~~~f~t~~lQ 217 (758)
T KOG0343|consen 139 TDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQ-MNILVCTPGRLLQHMDENPNFSTSNLQ 217 (758)
T ss_pred CCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhc-CCeEEechHHHHHHhhhcCCCCCCcce
Confidence 4456699999999999999999999999999999999999998877766655 99999999999999976 468889999
Q ss_pred EEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEcc
Q 006272 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (652)
Q Consensus 264 ~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 343 (652)
+||+||||+|++|||...+..|+..+|. .+|+++||||.+..+..+++..+ .+|..|.+.......++.++.|+|+.
T Consensus 218 mLvLDEADR~LDMGFk~tL~~Ii~~lP~--~RQTLLFSATqt~svkdLaRLsL-~dP~~vsvhe~a~~atP~~L~Q~y~~ 294 (758)
T KOG0343|consen 218 MLVLDEADRMLDMGFKKTLNAIIENLPK--KRQTLLFSATQTKSVKDLARLSL-KDPVYVSVHENAVAATPSNLQQSYVI 294 (758)
T ss_pred EEEeccHHHHHHHhHHHHHHHHHHhCCh--hheeeeeecccchhHHHHHHhhc-CCCcEEEEeccccccChhhhhheEEE
Confidence 9999999999999999999999999998 88999999999999999999988 78899988877778889999999999
Q ss_pred CCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC------CCcccccccchHHHHHHHhhhcCCCceEEEEcc
Q 006272 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (652)
Q Consensus 344 ~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~ 417 (652)
++..++...|+.+|..+ ...++|||+.|.+++..+++.+. .+..|||.|+|..|..++..|...+..||+|||
T Consensus 295 v~l~~Ki~~L~sFI~sh-lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TD 373 (758)
T KOG0343|consen 295 VPLEDKIDMLWSFIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTD 373 (758)
T ss_pred EehhhHHHHHHHHHHhc-cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeeh
Confidence 99999999999999988 56899999999999999998876 678899999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcc
Q 006272 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSV 468 (652)
Q Consensus 418 ~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~ 468 (652)
+++||||+|.|+|||+||+|.++++||||+|||+|....|.+++++.+.+.
T Consensus 374 v~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 374 VAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred hhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhH
Confidence 999999999999999999999999999999999999999888887776653
No 8
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-69 Score=540.20 Aligned_cols=374 Identities=31% Similarity=0.479 Sum_probs=316.9
Q ss_pred CCCCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcc--
Q 006272 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASK-- 180 (652)
Q Consensus 104 ~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~-~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~-- 180 (652)
...+...|..|.++..++++|..+||..|||||..+||++..| .|++..|.|||||||||.|||++.+.........
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3445567999999999999999999999999999999999988 8999999999999999999999966543321110
Q ss_pred -cCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCc--
Q 006272 181 -KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-- 257 (652)
Q Consensus 181 -~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~-- 257 (652)
.......+.+||++||||||.||.++|..++..+++++..++||.+...|.+.++..++|||+||||||.++..++.
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 01112334599999999999999999999999999999999999999999999999999999999999999988665
Q ss_pred -CCCCceEEecCcchhhhhcCcHHHHHHHHHhccC---CCCceEEEEcccCCh---------------------HHHHHH
Q 006272 258 -DLSSLKFRVLDEADEMLRMGFVEDVELILGKVED---ANKVQTLLFSATLPS---------------------WVKHIS 312 (652)
Q Consensus 258 -~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~---~~~~q~l~~SAT~~~---------------------~~~~~~ 312 (652)
++.++++||+||||+|++.|++..+..|+..+.. ....|+++||||++- .+..++
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 5778999999999999999999999999998862 235799999999652 222222
Q ss_pred HHh-cccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCc
Q 006272 313 TKF-LKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GAR 387 (652)
Q Consensus 313 ~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~ 387 (652)
... +...+..|++.... .+...+....+.|+..++...|+.+|..+ +|++|||||+++.+.+|+-+|. ...
T Consensus 416 k~ig~~~kpkiiD~t~q~--~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQS--ATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred HHhCccCCCeeEecCcch--hHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 222 33456777765443 55666777778899999999999988877 4899999999999999999998 567
Q ss_pred ccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCc
Q 006272 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDS 467 (652)
Q Consensus 388 ~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~ 467 (652)
.||+.|.|.+|.+.+++|++....||||||||+||||||+|+|||||.+|.+.+.|+||+|||+|++.+|+.+++.. +.
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~-P~ 570 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCG-PQ 570 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeC-hH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988766554 44
Q ss_pred chHHHHHHHHHHHhc
Q 006272 468 VIPAFKSAAEELLNN 482 (652)
Q Consensus 468 ~~~~~~~~~~~~~~~ 482 (652)
++..|+++.+.+-..
T Consensus 571 e~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 571 EVGPLKKLCKTLKKK 585 (731)
T ss_pred HhHHHHHHHHHHhhc
Confidence 477777776655443
No 9
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.5e-68 Score=487.86 Aligned_cols=358 Identities=30% Similarity=0.472 Sum_probs=327.2
Q ss_pred CCCCCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccC
Q 006272 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182 (652)
Q Consensus 103 ~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~ 182 (652)
........|++++|++.+++.+...||+.|+.+|+.||+.|+.|+|||++|..|+|||.+|.+.+++.+.-.
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-------- 92 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-------- 92 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc--------
Confidence 344556789999999999999999999999999999999999999999999999999999999999877653
Q ss_pred CCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCc
Q 006272 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (652)
Q Consensus 183 ~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~ 262 (652)
.+..++|||+||||||.|+.+.+..++.+.++.+..+.||.+.......+..+.+++.+||||+++++.++.+....+
T Consensus 93 --~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~v 170 (400)
T KOG0328|consen 93 --VRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAV 170 (400)
T ss_pred --cceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccce
Confidence 334689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEc
Q 006272 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (652)
Q Consensus 263 ~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (652)
++||+||||.||+.||..++..|+..+|. ..|++++|||+|..+.++..+|+ .+|..+-+...+ .+...++++++
T Consensus 171 kmlVLDEaDemL~kgfk~Qiydiyr~lp~--~~Qvv~~SATlp~eilemt~kfm-tdpvrilvkrde--ltlEgIKqf~v 245 (400)
T KOG0328|consen 171 KMLVLDEADEMLNKGFKEQIYDIYRYLPP--GAQVVLVSATLPHEILEMTEKFM-TDPVRILVKRDE--LTLEGIKQFFV 245 (400)
T ss_pred eEEEeccHHHHHHhhHHHHHHHHHHhCCC--CceEEEEeccCcHHHHHHHHHhc-CCceeEEEecCC--Cchhhhhhhee
Confidence 99999999999999999999999999987 78999999999999999999999 677777665443 55567899999
Q ss_pred cCCchh-hhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEcc
Q 006272 343 PCSSSA-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (652)
Q Consensus 343 ~~~~~~-~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~ 417 (652)
.+..++ |++.|+++...+ .-.+++|||||+..+++|.+.|+ .+..+||+|.|++|+.+++.|++|+.+|||+||
T Consensus 246 ~ve~EewKfdtLcdLYd~L-tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTD 324 (400)
T KOG0328|consen 246 AVEKEEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTD 324 (400)
T ss_pred eechhhhhHhHHHHHhhhh-ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEec
Confidence 888776 999999999887 45789999999999999999987 688999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHH
Q 006272 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAE 477 (652)
Q Consensus 418 ~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~ 477 (652)
+.+||||+|.|++|||||+|.+.+.|+||+||.||.|..|. .|-|+.++++..++++-+
T Consensus 325 VwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGv-ainFVk~~d~~~lrdieq 383 (400)
T KOG0328|consen 325 VWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV-AINFVKSDDLRILRDIEQ 383 (400)
T ss_pred hhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcce-EEEEecHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998865 477777777776665443
No 10
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-67 Score=500.84 Aligned_cols=352 Identities=34% Similarity=0.483 Sum_probs=314.9
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
....|+.|+|++++.+.|+.+|+..|||+|..|||.||.|+|+|.+|.||||||++|.+|++++|...+ .
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP----------~ 74 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP----------Y 74 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC----------C
Confidence 446799999999999999999999999999999999999999999999999999999999999998764 3
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhC----CcCCCCc
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG----NIDLSSL 262 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~----~~~l~~~ 262 (652)
+..+||++||||||.|+.+.|..+++..++++++++||.+.-.|...|..++||+|+|||||.+++..+ .+.++++
T Consensus 75 giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rl 154 (442)
T KOG0340|consen 75 GIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRL 154 (442)
T ss_pred cceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhce
Confidence 558999999999999999999999999999999999999999999999999999999999999999765 4568899
Q ss_pred eEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEc
Q 006272 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (652)
Q Consensus 263 ~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (652)
+++|+||||+|++..|.+.++.++..+|. ++|+++||||+++.+..+...-.... ....+...+...+...+.+.|+
T Consensus 155 kflVlDEADrvL~~~f~d~L~~i~e~lP~--~RQtLlfSATitd~i~ql~~~~i~k~-~a~~~e~~~~vstvetL~q~yI 231 (442)
T KOG0340|consen 155 KFLVLDEADRVLAGCFPDILEGIEECLPK--PRQTLLFSATITDTIKQLFGCPITKS-IAFELEVIDGVSTVETLYQGYI 231 (442)
T ss_pred eeEEecchhhhhccchhhHHhhhhccCCC--ccceEEEEeehhhHHHHhhcCCcccc-cceEEeccCCCCchhhhhhhee
Confidence 99999999999999999999999999998 68999999999998877765544322 2222223334466678889999
Q ss_pred cCCchhhhhhHHHHHHhhCC--CCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEc
Q 006272 343 PCSSSARSQVIPDIIRCYSS--GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (652)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~--~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT 416 (652)
.|+...+...+..++..+.. .+.++||+|+..+|+.|+..|. .+..+||.|+|.+|...+.+|+++..+|||||
T Consensus 232 ~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaT 311 (442)
T KOG0340|consen 232 LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIAT 311 (442)
T ss_pred ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEe
Confidence 99999999999999998865 7899999999999999999988 67899999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHH
Q 006272 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAF 472 (652)
Q Consensus 417 ~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~ 472 (652)
|+++||||||.|++|||||+|.++..||||+|||+|+|..|.. |.++.+.+.+.+
T Consensus 312 DVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~a-iSivt~rDv~l~ 366 (442)
T KOG0340|consen 312 DVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMA-ISIVTQRDVELL 366 (442)
T ss_pred chhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcce-EEEechhhHHHH
Confidence 9999999999999999999999999999999999999987654 444445544433
No 11
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-66 Score=511.78 Aligned_cols=348 Identities=32% Similarity=0.488 Sum_probs=313.6
Q ss_pred CcccccC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 109 NAVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 109 ~~~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
..|++++ |+++++++|...||..+||+|..+||.++.++||++.|+||||||+||++|+++.+.......+ ..
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~-----~~ 78 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP-----PG 78 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC-----cc
Confidence 4566665 6699999999999999999999999999999999999999999999999999999966543322 11
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcC-CCceEEEEeCCcchHHHHHHhc-CCCcEEEeCcHHHHHHHHhCC--cCCCCc
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGN--IDLSSL 262 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~--~~l~~~ 262 (652)
..-+|||+||||||.||.+.+..+..+ .++++.+++||.+.......+. .+++|+|||||||.+++++.. +++.++
T Consensus 79 ~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsL 158 (567)
T KOG0345|consen 79 QVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSL 158 (567)
T ss_pred ceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhcccccc
Confidence 356999999999999999999988876 7899999999999988887775 578999999999999998844 455699
Q ss_pred eEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEc
Q 006272 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (652)
Q Consensus 263 ~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (652)
.+||+||||+++++||..++..|++.+|. .+++=+||||.+..+..+....+ .++..|.+.......++..+...|+
T Consensus 159 e~LVLDEADrLldmgFe~~~n~ILs~LPK--QRRTGLFSATq~~~v~dL~raGL-RNpv~V~V~~k~~~~tPS~L~~~Y~ 235 (567)
T KOG0345|consen 159 EILVLDEADRLLDMGFEASVNTILSFLPK--QRRTGLFSATQTQEVEDLARAGL-RNPVRVSVKEKSKSATPSSLALEYL 235 (567)
T ss_pred ceEEecchHhHhcccHHHHHHHHHHhccc--ccccccccchhhHHHHHHHHhhc-cCceeeeecccccccCchhhcceee
Confidence 99999999999999999999999999998 77999999999999999999999 6788888776666667888999999
Q ss_pred cCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC------CCcccccccchHHHHHHHhhhcCCCceEEEEc
Q 006272 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (652)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT 416 (652)
.|....|...+.+++... ...++|||.+|...++.....|. .+..+||.|.+..|..++..|++....||+||
T Consensus 236 v~~a~eK~~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~T 314 (567)
T KOG0345|consen 236 VCEADEKLSQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCT 314 (567)
T ss_pred EecHHHHHHHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEee
Confidence 999999999999999886 66899999999999998888776 67899999999999999999999889999999
Q ss_pred cccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccC
Q 006272 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS 465 (652)
Q Consensus 417 ~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~ 465 (652)
|+++||||||+|++||+||+|.++..|+||+|||||+|..|.+++++.+
T Consensus 315 DVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 315 DVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNP 363 (567)
T ss_pred hhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecc
Confidence 9999999999999999999999999999999999999999888777666
No 12
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.3e-66 Score=515.68 Aligned_cols=367 Identities=34% Similarity=0.531 Sum_probs=328.1
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
-.+|++.+++..+++.+.+.||..|+|||.++||..++.+|+|+.|.||||||++|++|++..+...+... .......+
T Consensus 244 lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~-~~en~~~g 322 (673)
T KOG0333|consen 244 LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMA-RLENNIEG 322 (673)
T ss_pred ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcc-hhhhcccC
Confidence 35688899999999999999999999999999999999999999999999999999999998887654211 11123467
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEec
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lVi 267 (652)
|+++|+.|||+||+||.++-.+++...+++++.+.||.+...|--.+..+|+|+|+|||||++.|.+..+.++++.+||+
T Consensus 323 pyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvl 402 (673)
T KOG0333|consen 323 PYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVL 402 (673)
T ss_pred ceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhcCcHHHHHHHHHhccCCC-----------------------CceEEEEcccCChHHHHHHHHhcccCCeEEE
Q 006272 268 DEADEMLRMGFVEDVELILGKVEDAN-----------------------KVQTLLFSATLPSWVKHISTKFLKSDKKTID 324 (652)
Q Consensus 268 DEah~~l~~gf~~~~~~i~~~~~~~~-----------------------~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~ 324 (652)
||||+|+|+||.+++..|+..+|..+ -+|+++||||+|+.+..+++.|| ..+.++.
T Consensus 403 deadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~yl-r~pv~vt 481 (673)
T KOG0333|consen 403 DEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYL-RRPVVVT 481 (673)
T ss_pred cchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHh-hCCeEEE
Confidence 99999999999999999999997532 17999999999999999999999 5677766
Q ss_pred EccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHH
Q 006272 325 LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREV 400 (652)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~ 400 (652)
+... ......+.|.++.+....+...|..++... ...++|||+|+++.|+.|++.|. .+..|||+-+|.+|+.
T Consensus 482 ig~~--gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 482 IGSA--GKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred eccC--CCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 5433 356677888888888888899999999887 56899999999999999999998 6889999999999999
Q ss_pred HHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHH
Q 006272 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELL 480 (652)
Q Consensus 401 ~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~ 480 (652)
++..|++|...||||||+++||||||+|++|||||++.|++.|+||||||||+|+.|. .+.|+...+..-|.++.+.+.
T Consensus 559 aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gt-aiSflt~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 559 ALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGT-AISFLTPADTAVFYDLKQALR 637 (673)
T ss_pred HHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCce-eEEEeccchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998764 566677766665655554444
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.5e-64 Score=539.57 Aligned_cols=345 Identities=35% Similarity=0.550 Sum_probs=305.0
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 006272 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (652)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (652)
+|++|+|++.+++.|.++||..|||+|.++||.++.++|+|++||||||||++|++|+++.+....... .....++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~----~~~~~~~ 77 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA----KGRRPVR 77 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhccccc----ccCCCce
Confidence 588999999999999999999999999999999999999999999999999999999999986543211 0123468
Q ss_pred EEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCc
Q 006272 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (652)
Q Consensus 190 ~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDE 269 (652)
+|||+|||+||.|+++.+..+....++.+..++|+.+...+...+...++|+|+||++|++++....+.++++++|||||
T Consensus 78 aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDE 157 (456)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDE 157 (456)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeec
Confidence 99999999999999999999999899999999999999998888888999999999999999998888999999999999
Q ss_pred chhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhh
Q 006272 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349 (652)
Q Consensus 270 ah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (652)
||+|++++|..++..++..++. ..|+++||||++..+..++..++ .++..+.+... ......+.+.+..+....+
T Consensus 158 ah~ll~~~~~~~i~~il~~l~~--~~q~l~~SAT~~~~~~~l~~~~~-~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~k 232 (456)
T PRK10590 158 ADRMLDMGFIHDIRRVLAKLPA--KRQNLLFSATFSDDIKALAEKLL-HNPLEIEVARR--NTASEQVTQHVHFVDKKRK 232 (456)
T ss_pred HHHHhccccHHHHHHHHHhCCc--cCeEEEEeCCCcHHHHHHHHHHc-CCCeEEEEecc--cccccceeEEEEEcCHHHH
Confidence 9999999999999999999976 78999999999999998888888 45555554332 2344566777777777777
Q ss_pred hhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCC
Q 006272 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425 (652)
Q Consensus 350 ~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi 425 (652)
..++..++... ...++||||+++..|+.|+..|. .+..+||+|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 233 ~~~l~~l~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi 311 (456)
T PRK10590 233 RELLSQMIGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 (456)
T ss_pred HHHHHHHHHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc
Confidence 77777776654 45789999999999999999997 57889999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeecc
Q 006272 426 NDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQV 464 (652)
Q Consensus 426 ~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~ 464 (652)
|+|++||||++|.++++|+||+|||||+|..+.++.++.
T Consensus 312 p~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~ 350 (456)
T PRK10590 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC 350 (456)
T ss_pred ccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEec
Confidence 999999999999999999999999999998876554443
No 14
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.1e-64 Score=542.57 Aligned_cols=436 Identities=32% Similarity=0.456 Sum_probs=361.0
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
..+|++|+|++.+++.|.++||..|||+|+++||.++.|+|++++||||||||++|++|+++.+.... ..
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~----------~~ 72 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR----------FR 72 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc----------CC
Confidence 35799999999999999999999999999999999999999999999999999999999999986432 24
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEe
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lV 266 (652)
+++||++|||+||.|++++++.++... ++++..++|+.+...+...+..+++|+|+||++|.+++.++.+.++++++||
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lV 152 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLV 152 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEE
Confidence 579999999999999999999988654 7899999999999999999999999999999999999999889999999999
Q ss_pred cCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCc
Q 006272 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (652)
Q Consensus 267 iDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (652)
|||||+|++++|..++..++..++. ..|+++||||+|+.+..++..++ ..+..+.+.... ....+.+.++.+..
T Consensus 153 iDEad~~l~~g~~~~l~~i~~~~~~--~~q~ll~SAT~~~~~~~l~~~~~-~~~~~i~~~~~~---~~~~i~~~~~~~~~ 226 (460)
T PRK11776 153 LDEADRMLDMGFQDAIDAIIRQAPA--RRQTLLFSATYPEGIAAISQRFQ-RDPVEVKVESTH---DLPAIEQRFYEVSP 226 (460)
T ss_pred EECHHHHhCcCcHHHHHHHHHhCCc--ccEEEEEEecCcHHHHHHHHHhc-CCCEEEEECcCC---CCCCeeEEEEEeCc
Confidence 9999999999999999999999987 78999999999999999999888 556666654322 34557888888888
Q ss_pred hhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccC
Q 006272 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (652)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 422 (652)
..+...+..++... ...++||||+|+..|+.++..|. .+..+||+|++.+|..+++.|++|..+|||||++++||
T Consensus 227 ~~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rG 305 (460)
T PRK11776 227 DERLPALQRLLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARG 305 (460)
T ss_pred HHHHHHHHHHHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence 88888888888765 45789999999999999999997 67899999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCc
Q 006272 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYT 502 (652)
Q Consensus 423 ldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (652)
||+|++++|||||+|.++++|+||+|||||+|..+.++.+ +.+.+...+ ..+++.+... +.... + .
T Consensus 306 iDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l-~~~~e~~~~-~~i~~~~~~~-~~~~~-----l------~ 371 (460)
T PRK11776 306 LDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSL-VAPEEMQRA-NAIEDYLGRK-LNWEP-----L------P 371 (460)
T ss_pred cchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEE-EchhHHHHH-HHHHHHhCCC-Cceec-----C------C
Confidence 9999999999999999999999999999999988776554 444443333 3344444331 11100 0 0
Q ss_pred ccccccccccCCCcEEEEEecCCC-ccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecChhhHHHHHhhc
Q 006272 503 EIKSRSLLSSLEDHVTVVLEAGKP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGA 577 (652)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~~~a~~~~~~~ 577 (652)
.............+.++.+.+|++ ...++++.+++....+. ....++.+.+.+ ..+|++++...++.....+
T Consensus 372 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~ 444 (460)
T PRK11776 372 SLSPLSGVPLLPEMVTLCIDGGKKDKLRPGDILGALTGDAGL-DGAQIGKINVTD--FHAYVAVERAVAKKALKKL 444 (460)
T ss_pred chhhcccccCCCCeEEEEEecccccCCCccchHHHhhcccCC-ChhhcCCccccc--ccceeecchhhHHHHHHHh
Confidence 000000112334578899999876 44566777887664433 335678888777 6899999988777776544
No 15
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-65 Score=506.20 Aligned_cols=358 Identities=31% Similarity=0.481 Sum_probs=306.6
Q ss_pred CCCCCcccccCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCC
Q 006272 105 SEHPNAVSRFRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183 (652)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~ 183 (652)
......|..++|++.+...|.. ++|..||.+|.++||.+++|+|++|.++||||||+||++|+++.|.....+..
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~---- 207 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ---- 207 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc----
Confidence 3445679999999999999965 69999999999999999999999999999999999999999999988765544
Q ss_pred CCCCCeEEEEeccHHHHHHHHHHHHHHhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCcCCCC
Q 006272 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSS 261 (652)
Q Consensus 184 ~~~~~~~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~-~~~~l~~ 261 (652)
+..++.+||++||||||.|+|+.+.++.+.+ .+--+.+.||.....+..+++++++|+|+|||||++||.+ ..+.+++
T Consensus 208 Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~ 287 (708)
T KOG0348|consen 208 RSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSR 287 (708)
T ss_pred ccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeee
Confidence 3567899999999999999999999987654 4555788999999999999999999999999999999987 6788999
Q ss_pred ceEEecCcchhhhhcCcHHHHHHHHHhccCC-----------CCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCc-
Q 006272 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDA-----------NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE- 329 (652)
Q Consensus 262 ~~~lViDEah~~l~~gf~~~~~~i~~~~~~~-----------~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~- 329 (652)
++||||||||+++++||..++..|+..+... ...|.+++|||+++.|..++...+ .++..|.+....
T Consensus 288 LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sL-kDpv~I~ld~s~~ 366 (708)
T KOG0348|consen 288 LRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSL-KDPVYISLDKSHS 366 (708)
T ss_pred eeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccc-cCceeeeccchhh
Confidence 9999999999999999999999999988331 136899999999999999999888 677777722110
Q ss_pred ----------------------ccccCCCceEEEccCCchhhhhhHHHHHHhh---CCCCeEEEEecchhHHHHHHHhcC
Q 006272 330 ----------------------KMKASTNVRHIVLPCSSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP 384 (652)
Q Consensus 330 ----------------------~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~~~~iVF~~s~~~~~~l~~~l~ 384 (652)
....+.++.+.|+.++..-++-.|..+|... ....++|||+.+.+.++.-+.+|.
T Consensus 367 ~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~ 446 (708)
T KOG0348|consen 367 QLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFS 446 (708)
T ss_pred hcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHH
Confidence 1233445666777777777776666665433 245689999999999988887774
Q ss_pred --------------------------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCC
Q 006272 385 --------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR 438 (652)
Q Consensus 385 --------------------------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~ 438 (652)
.+..|||.|+|.+|..+++.|...+..||+||||++||||+|+|++||+||+|.
T Consensus 447 ~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~ 526 (708)
T KOG0348|consen 447 EALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPF 526 (708)
T ss_pred hhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCC
Confidence 355799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhhcccCCCcccceeeccCCc
Q 006272 439 DVEAYIHRSGRTGRAGVEAAETITQVSDS 467 (652)
Q Consensus 439 s~~~y~qr~GR~gR~g~~~~~~i~~~~~~ 467 (652)
++++|+||+|||+|+|..|..++++.+.+
T Consensus 527 s~adylHRvGRTARaG~kG~alLfL~P~E 555 (708)
T KOG0348|consen 527 STADYLHRVGRTARAGEKGEALLFLLPSE 555 (708)
T ss_pred CHHHHHHHhhhhhhccCCCceEEEecccH
Confidence 99999999999999999887766555443
No 16
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-64 Score=486.22 Aligned_cols=354 Identities=35% Similarity=0.589 Sum_probs=315.4
Q ss_pred ccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEE
Q 006272 113 RFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192 (652)
Q Consensus 113 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~li 192 (652)
.|.-.+++++.+++.||.+|||||.+++|.+|+|+|++++|.||+|||++|++|-+-++...+... ....+|.+|+
T Consensus 224 AFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~----~qr~~p~~lv 299 (629)
T KOG0336|consen 224 AFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRR----EQRNGPGVLV 299 (629)
T ss_pred HHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhh----hccCCCceEE
Confidence 467889999999999999999999999999999999999999999999999999988776654433 2456789999
Q ss_pred EeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchh
Q 006272 193 LLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE 272 (652)
Q Consensus 193 l~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~ 272 (652)
++||||||.|+.-++.++. +.+++..++||+.+...|...++.+.+|+|+||+||.++...+.++|.++.||||||||+
T Consensus 300 l~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADr 378 (629)
T KOG0336|consen 300 LTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADR 378 (629)
T ss_pred EeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhh
Confidence 9999999999998888765 468899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhh
Q 006272 273 MLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352 (652)
Q Consensus 273 ~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (652)
|||+||.+++.+|+-.+.. .+|+++.|||.|+.+..++..|+ +.+..+ +++.-.......++|.++.....++...
T Consensus 379 MLDMgFEpqIrkilldiRP--DRqtvmTSATWP~~VrrLa~sY~-Kep~~v-~vGsLdL~a~~sVkQ~i~v~~d~~k~~~ 454 (629)
T KOG0336|consen 379 MLDMGFEPQIRKILLDIRP--DRQTVMTSATWPEGVRRLAQSYL-KEPMIV-YVGSLDLVAVKSVKQNIIVTTDSEKLEI 454 (629)
T ss_pred hhcccccHHHHHHhhhcCC--cceeeeecccCchHHHHHHHHhh-hCceEE-EecccceeeeeeeeeeEEecccHHHHHH
Confidence 9999999999999988876 78999999999999999999999 444444 4444445566678888888888999999
Q ss_pred HHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCc
Q 006272 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428 (652)
Q Consensus 353 l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v 428 (652)
+..++....+..++||||..+..|+.|...|. .+..|||+-.|.+|+..++.|++|.++||||||+++||||+++|
T Consensus 455 ~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~Di 534 (629)
T KOG0336|consen 455 VQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDI 534 (629)
T ss_pred HHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhc
Confidence 99999999999999999999999999998876 67789999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHH
Q 006272 429 QLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAA 476 (652)
Q Consensus 429 ~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~ 476 (652)
+||+|||+|.+++.|+||+|||||+|+.+... .+....+...+..++
T Consensus 535 THV~NyDFP~nIeeYVHRvGrtGRaGr~G~si-s~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 535 THVYNYDFPRNIEEYVHRVGRTGRAGRTGTSI-SFLTRNDWSMAEELI 581 (629)
T ss_pred ceeeccCCCccHHHHHHHhcccccCCCCcceE-EEEehhhHHHHHHHH
Confidence 99999999999999999999999999887654 444444444343333
No 17
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.2e-63 Score=541.40 Aligned_cols=368 Identities=33% Similarity=0.561 Sum_probs=319.3
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCC
Q 006272 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (652)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 185 (652)
.....|+++++++.+++.|.+.||..|||+|.++||.+++|+|+|++||||||||++|++|++.++...... ...
T Consensus 127 ~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~-----~~~ 201 (545)
T PTZ00110 127 KPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL-----RYG 201 (545)
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc-----cCC
Confidence 344578889999999999999999999999999999999999999999999999999999999888653221 123
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEE
Q 006272 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (652)
Q Consensus 186 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~l 265 (652)
.+|++|||+||||||.|+++++..++...++++.+++|+.+...+...+..+++|+|+||++|++++..+...+.++++|
T Consensus 202 ~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 202 DGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYL 281 (545)
T ss_pred CCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 46889999999999999999999999888999999999999999999999999999999999999999988889999999
Q ss_pred ecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCC
Q 006272 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (652)
Q Consensus 266 ViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 345 (652)
||||||+|++++|..++..|+..++. .+|+++||||+|..+..++..++...+..+.+.... .....++.+.+..+.
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~--~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~-l~~~~~i~q~~~~~~ 358 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRP--DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD-LTACHNIKQEVFVVE 358 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCC--CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc-cccCCCeeEEEEEEe
Confidence 99999999999999999999999876 789999999999999999998885556665553322 234456777777777
Q ss_pred chhhhhhHHHHHHhhC-CCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccc
Q 006272 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (652)
Q Consensus 346 ~~~~~~~l~~ll~~~~-~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~ 420 (652)
...+...|..++.... ...++||||+++..|+.|+..|. .+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 359 ~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~ 438 (545)
T PTZ00110 359 EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVAS 438 (545)
T ss_pred chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhh
Confidence 7778888888887654 67899999999999999999997 577899999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHhcc
Q 006272 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNNS 483 (652)
Q Consensus 421 ~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 483 (652)
||||+|+|++|||||+|.++++|+||+|||||+|..+.++. ++.+++.... ..+.+++.+.
T Consensus 439 rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~-~~~~~~~~~~-~~l~~~l~~~ 499 (545)
T PTZ00110 439 RGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYT-FLTPDKYRLA-RDLVKVLREA 499 (545)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEE-EECcchHHHH-HHHHHHHHHc
Confidence 99999999999999999999999999999999998877644 4455544433 3334444443
No 18
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-65 Score=479.16 Aligned_cols=343 Identities=29% Similarity=0.460 Sum_probs=318.5
Q ss_pred cCCCCCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCccc
Q 006272 102 RGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181 (652)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~ 181 (652)
.......+.|++|.|..+++..+.+.||+.|+|+|+++||.++.|+|+++.|..|+|||.||++|+++.+....
T Consensus 78 DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~------ 151 (459)
T KOG0326|consen 78 DVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK------ 151 (459)
T ss_pred ccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc------
Confidence 33445667899999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCC
Q 006272 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSS 261 (652)
Q Consensus 182 ~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~ 261 (652)
...+++|++||||||.|+.+.+..+++++++.+...+||++..+.+-++...++++|+||||+++++.++--++++
T Consensus 152 ----~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~ 227 (459)
T KOG0326|consen 152 ----NVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSD 227 (459)
T ss_pred ----cceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchh
Confidence 3457999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred ceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEE
Q 006272 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341 (652)
Q Consensus 262 ~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 341 (652)
+.++|+||||.+++..|...++.++..+|. .+|++++|||+|..+..+..+++ ..|..|.+.. ..+...+.|+|
T Consensus 228 c~~lV~DEADKlLs~~F~~~~e~li~~lP~--~rQillySATFP~tVk~Fm~~~l-~kPy~INLM~---eLtl~GvtQyY 301 (459)
T KOG0326|consen 228 CVILVMDEADKLLSVDFQPIVEKLISFLPK--ERQILLYSATFPLTVKGFMDRHL-KKPYEINLME---ELTLKGVTQYY 301 (459)
T ss_pred ceEEEechhhhhhchhhhhHHHHHHHhCCc--cceeeEEecccchhHHHHHHHhc-cCcceeehhh---hhhhcchhhhe
Confidence 999999999999999999999999999998 88999999999999999999999 5677777653 35667889999
Q ss_pred ccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEcc
Q 006272 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (652)
Q Consensus 342 ~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~ 417 (652)
..+....|...|..++..+. -.+.||||||...++.|+..+. .+.++|+.|.|..|.+++..|++|.++.|||||
T Consensus 302 afV~e~qKvhCLntLfskLq-INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctD 380 (459)
T KOG0326|consen 302 AFVEERQKVHCLNTLFSKLQ-INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTD 380 (459)
T ss_pred eeechhhhhhhHHHHHHHhc-ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehh
Confidence 99999999999999988874 4689999999999999998776 788999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCccccee
Q 006272 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETI 461 (652)
Q Consensus 418 ~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i 461 (652)
.+.||||+++|++|||||+|+++++|+||+||.||.|..|.++-
T Consensus 381 L~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAIn 424 (459)
T KOG0326|consen 381 LFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAIN 424 (459)
T ss_pred hhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEE
Confidence 99999999999999999999999999999999999998876543
No 19
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-64 Score=509.73 Aligned_cols=371 Identities=37% Similarity=0.562 Sum_probs=325.7
Q ss_pred CcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCC
Q 006272 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (652)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (652)
..|..-.+.+.+...++..+|+.|||+|+.+||.+..|+|+++||+||||||.||++|++..++..........+....|
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 36777778999999999999999999999999999999999999999999999999999999987765444444444679
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecC
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViD 268 (652)
++||++||||||.|++++.+++.-...+.++.+||+.++..+...+..+++|+|+|||||.+++.++.+.|+++++||||
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLD 233 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLD 233 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEec
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhh-cCcHHHHHHHHHhccC--CCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCC
Q 006272 269 EADEMLR-MGFVEDVELILGKVED--ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (652)
Q Consensus 269 Eah~~l~-~gf~~~~~~i~~~~~~--~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 345 (652)
|||+|+| ++|.+++.+|+..+.. ....|+++||||+|..+..++..|+..++..+.+... -....++.|..+.+.
T Consensus 234 EADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rv--g~~~~ni~q~i~~V~ 311 (482)
T KOG0335|consen 234 EADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRV--GSTSENITQKILFVN 311 (482)
T ss_pred chHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeee--ccccccceeEeeeec
Confidence 9999999 9999999999988744 3578999999999999999998888655555555433 356678888888888
Q ss_pred chhhhhhHHHHHHhhC---CCC-----eEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEE
Q 006272 346 SSARSQVIPDIIRCYS---SGG-----RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413 (652)
Q Consensus 346 ~~~~~~~l~~ll~~~~---~~~-----~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vL 413 (652)
...+...|.+++.... ..+ +++|||.|++.|..|+..|. .+..+||+.+|.+|.+.++.|++|.+.||
T Consensus 312 ~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvl 391 (482)
T KOG0335|consen 312 EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVL 391 (482)
T ss_pred chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceE
Confidence 8888888888887543 234 89999999999999999997 67789999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHhcc
Q 006272 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNNS 483 (652)
Q Consensus 414 vaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 483 (652)
|||++++||||+|+|+||||||+|.+..+|+||||||||+|..|....++- .......+.+.+++.++
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n--~~~~~i~~~L~~~l~ea 459 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFN--EKNQNIAKALVEILTEA 459 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEec--cccchhHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999997776555443 33344444555555554
No 20
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-62 Score=536.52 Aligned_cols=352 Identities=35% Similarity=0.573 Sum_probs=306.9
Q ss_pred CcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCC
Q 006272 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (652)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (652)
..|++|+|++.+++.|.+.||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+........ .....+
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~---~~~~~~ 85 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALAD---RKPEDP 85 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccc---cccCCc
Confidence 35999999999999999999999999999999999999999999999999999999999999875321110 012357
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhC-CcCCCCceEEec
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFRVL 267 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-~~~l~~~~~lVi 267 (652)
++|||+||+|||.|+++.+..++...++++..++|+.....+...+..+++|||+||++|++++.+. .+.+.++++|||
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 8999999999999999999999999999999999999999988888888999999999999999775 467899999999
Q ss_pred CcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCch
Q 006272 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (652)
Q Consensus 268 DEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (652)
||||+|++++|..++..|+..++.....|+++||||++..+..+...++. .+..+.+... ......+.+.++.+...
T Consensus 166 DEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~-~p~~i~v~~~--~~~~~~i~q~~~~~~~~ 242 (572)
T PRK04537 166 DEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMN-EPEKLVVETE--TITAARVRQRIYFPADE 242 (572)
T ss_pred cCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhc-CCcEEEeccc--cccccceeEEEEecCHH
Confidence 99999999999999999999998755689999999999999999888884 4444433222 23445677777777777
Q ss_pred hhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCC
Q 006272 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (652)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gl 423 (652)
.+...+..++... ...++||||+|+..|+.|++.|. .+..|||+|++.+|..+++.|++|+++|||||+++++||
T Consensus 243 ~k~~~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGI 321 (572)
T PRK04537 243 EKQTLLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGL 321 (572)
T ss_pred HHHHHHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCC
Confidence 7777777777654 56799999999999999999997 688999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcc
Q 006272 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSV 468 (652)
Q Consensus 424 di~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~ 468 (652)
|+|+|++|||||+|.++++|+||+|||||.|..+.++.+ +.+.+
T Consensus 322 Dip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~-~~~~~ 365 (572)
T PRK04537 322 HIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF-ACERY 365 (572)
T ss_pred CccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEE-ecHHH
Confidence 999999999999999999999999999999988765444 44443
No 21
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.8e-63 Score=526.84 Aligned_cols=357 Identities=33% Similarity=0.541 Sum_probs=312.8
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
...|++|+|++.+++.|.+.||..|||+|.++||.++.|+|++++||||||||++|++|+++.+........ ....+
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~---~~~~~ 83 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPED---RKVNQ 83 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccc---cccCC
Confidence 357999999999999999999999999999999999999999999999999999999999999875432110 11345
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEec
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lVi 267 (652)
+++|||+||||||.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|++++....+.++++++|||
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lVi 163 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVL 163 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEE
Confidence 78999999999999999999999999999999999999999888888888999999999999999998899999999999
Q ss_pred CcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCch
Q 006272 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (652)
Q Consensus 268 DEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (652)
||||+|++++|..++..++..++.....+.++||||++..+..+...++ ..+..+.+.... .....+.+.++.+...
T Consensus 164 DEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~-~~p~~i~v~~~~--~~~~~i~~~~~~~~~~ 240 (423)
T PRK04837 164 DEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHM-NNPEYVEVEPEQ--KTGHRIKEELFYPSNE 240 (423)
T ss_pred ecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHC-CCCEEEEEcCCC--cCCCceeEEEEeCCHH
Confidence 9999999999999999999999865567889999999999998888887 456666554332 3345566666666777
Q ss_pred hhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCC
Q 006272 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (652)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gl 423 (652)
.+...+..++... ...++||||+++..|+.++..|. .+..+||+|++.+|..+++.|++|+++||||||+++|||
T Consensus 241 ~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGi 319 (423)
T PRK04837 241 EKMRLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGL 319 (423)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCC
Confidence 7888888887664 46799999999999999999996 678999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHH
Q 006272 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAF 472 (652)
Q Consensus 424 di~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~ 472 (652)
|+|+|++|||||+|.++++|+||+|||||+|..|.+ ++++.+.+...+
T Consensus 320 Dip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a-i~~~~~~~~~~~ 367 (423)
T PRK04837 320 HIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS-ISLACEEYALNL 367 (423)
T ss_pred CccccCEEEEeCCCCchhheEeccccccCCCCCeeE-EEEeCHHHHHHH
Confidence 999999999999999999999999999999988765 455555443333
No 22
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-63 Score=482.43 Aligned_cols=352 Identities=27% Similarity=0.427 Sum_probs=316.6
Q ss_pred CcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCC
Q 006272 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (652)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (652)
..|++|+|++.|++++.+.||..||-||+.+||.+++|+|+++.|.||||||+||+||+++.|....... ....+|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~----~~e~~~ 94 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN----DGEQGP 94 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc----cccccc
Confidence 6799999999999999999999999999999999999999999999999999999999999998765432 345788
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCC--ceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCC-cCCCCceEE
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVG--LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-IDLSSLKFR 265 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-~~l~~~~~l 265 (652)
.++||+||||||+|++..+.++..++. +++..+....+.......+...++|+|+||++++.++..+. ..+..+++|
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~L 174 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFL 174 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeE
Confidence 999999999999999999998877664 66666776777666778888999999999999999999887 678899999
Q ss_pred ecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCC
Q 006272 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (652)
Q Consensus 266 ViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 345 (652)
|+||||.++..||.+++..|...+|. ..|.++||||+.+++..+-..++ .+|..+.+...+. ..+.++.|+++.|+
T Consensus 175 VvDEADLllsfGYeedlk~l~~~LPr--~~Q~~LmSATl~dDv~~LKkL~l-~nPviLkl~e~el-~~~dqL~Qy~v~cs 250 (569)
T KOG0346|consen 175 VVDEADLLLSFGYEEDLKKLRSHLPR--IYQCFLMSATLSDDVQALKKLFL-HNPVILKLTEGEL-PNPDQLTQYQVKCS 250 (569)
T ss_pred EechhhhhhhcccHHHHHHHHHhCCc--hhhheeehhhhhhHHHHHHHHhc-cCCeEEEeccccC-CCcccceEEEEEec
Confidence 99999999999999999999999997 88999999999999999988888 6777787766553 46688999999999
Q ss_pred chhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccc---
Q 006272 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV--- 418 (652)
Q Consensus 346 ~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~--- 418 (652)
..+++.+++.+++..--.+++|||+||++.|.+|.-.|. ..++|.|.|+...|..++++|..|-+++|||||.
T Consensus 251 e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~ 330 (569)
T KOG0346|consen 251 EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSAD 330 (569)
T ss_pred cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccc
Confidence 999999999999887778999999999999999998887 6778999999999999999999999999999992
Q ss_pred --------------------------------cccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCC
Q 006272 419 --------------------------------AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD 466 (652)
Q Consensus 419 --------------------------------~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~ 466 (652)
++||||+.+|.+|||||+|.++.+||||+|||+|+++.|.. +.++.+
T Consensus 331 ~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gta-lSfv~P 409 (569)
T KOG0346|consen 331 GDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTA-LSFVSP 409 (569)
T ss_pred hhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCce-EEEecc
Confidence 56999999999999999999999999999999999988765 445555
Q ss_pred cch
Q 006272 467 SVI 469 (652)
Q Consensus 467 ~~~ 469 (652)
.+.
T Consensus 410 ~e~ 412 (569)
T KOG0346|consen 410 KEE 412 (569)
T ss_pred hHH
Confidence 443
No 23
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.8e-61 Score=522.71 Aligned_cols=367 Identities=28% Similarity=0.452 Sum_probs=312.8
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCC
Q 006272 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (652)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 185 (652)
.....|.+++|++.+++.|.+.||..|||+|.++||.++.|+|+|++||||||||++|++|++.++....... ....
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~---~~~~ 194 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH---PSEQ 194 (518)
T ss_pred chhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc---cccc
Confidence 3446788999999999999999999999999999999999999999999999999999999999876432111 0113
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEE
Q 006272 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (652)
Q Consensus 186 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~l 265 (652)
.++++|||+||||||.|+++.++.++...++.+..++||.....+...+..+++|+|+||++|.+++.+..+.++++++|
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~l 274 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVL 274 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEE
Confidence 56789999999999999999999999888999999999999998888888899999999999999999988899999999
Q ss_pred ecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCC
Q 006272 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (652)
Q Consensus 266 ViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 345 (652)
||||||+|++++|..++..|+..++ .+|+++||||++..+..++..++ .++..+.+.... .....+.+.++.+.
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~---~~q~l~~SATl~~~v~~l~~~~~-~~~~~i~~~~~~--~~~~~v~q~~~~~~ 348 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS---QPQVLLFSATVSPEVEKFASSLA-KDIILISIGNPN--RPNKAVKQLAIWVE 348 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC---CCcEEEEEeeCCHHHHHHHHHhC-CCCEEEEeCCCC--CCCcceeEEEEecc
Confidence 9999999999999999999998885 47999999999999998888887 455555554322 33455677777777
Q ss_pred chhhhhhHHHHHHhhC-CCCeEEEEecchhHHHHHHHhcC-----CCcccccccchHHHHHHHhhhcCCCceEEEEcccc
Q 006272 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (652)
Q Consensus 346 ~~~~~~~l~~ll~~~~-~~~~~iVF~~s~~~~~~l~~~l~-----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~ 419 (652)
...+...+..++.... ...++||||+++..++.|+..|. .+..+||+|++.+|..+++.|++|+++|||||+++
T Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl 428 (518)
T PLN00206 349 TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVL 428 (518)
T ss_pred chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHh
Confidence 7777777777776543 34689999999999999999885 56789999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHhcc
Q 006272 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNNS 483 (652)
Q Consensus 420 ~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 483 (652)
+||||+|+|++|||||+|.++++|+||+|||||.|..|.+++ ++.+++...+. .+.+.+...
T Consensus 429 ~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~-f~~~~~~~~~~-~l~~~l~~~ 490 (518)
T PLN00206 429 GRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIV-FVNEEDRNLFP-ELVALLKSS 490 (518)
T ss_pred hccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEE-EEchhHHHHHH-HHHHHHHHc
Confidence 999999999999999999999999999999999998766554 45555444343 333444443
No 24
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.5e-63 Score=476.21 Aligned_cols=367 Identities=33% Similarity=0.529 Sum_probs=308.2
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCC
Q 006272 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (652)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 185 (652)
....+|.++.++..+++.|++.|+..|||||.+.||.+++|+|+|..|-||||||++|.||++-..+......+ -..+
T Consensus 167 PPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lP--f~~~ 244 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLP--FARG 244 (610)
T ss_pred CchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCc--cccC
Confidence 34467888999999999999999999999999999999999999999999999999999998765543322111 1235
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcC------CCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCC
Q 006272 186 RAPSVLVLLPTRELAKQVHEDFDVYGGA------VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDL 259 (652)
Q Consensus 186 ~~~~~lil~PtreLa~q~~~~~~~~~~~------~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l 259 (652)
.+|..||+||+||||.|+++.+..+... ..+++..+.||.+...|...++.+++|+|+|||||.++|....++|
T Consensus 245 EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sL 324 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSL 324 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccH
Confidence 6789999999999999999988876533 3478889999999999999999999999999999999999999999
Q ss_pred CCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceE
Q 006272 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339 (652)
Q Consensus 260 ~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 339 (652)
.-++||++||||+|+|+||.+++..|+.++.. .+|+++||||||..++.+++.-+ -.|..+++.... ..+.++.|
T Consensus 325 d~CRyL~lDEADRmiDmGFEddir~iF~~FK~--QRQTLLFSATMP~KIQ~FAkSAL-VKPvtvNVGRAG--AAsldViQ 399 (610)
T KOG0341|consen 325 DACRYLTLDEADRMIDMGFEDDIRTIFSFFKG--QRQTLLFSATMPKKIQNFAKSAL-VKPVTVNVGRAG--AASLDVIQ 399 (610)
T ss_pred HHHHHhhhhhHHHHhhccchhhHHHHHHHHhh--hhheeeeeccccHHHHHHHHhhc-ccceEEeccccc--ccchhHHH
Confidence 99999999999999999999999999999987 78999999999999999999888 566777654332 33334333
Q ss_pred EEccCCchhhhhhHHHHHHhhC-CCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEE
Q 006272 340 IVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414 (652)
Q Consensus 340 ~~~~~~~~~~~~~l~~ll~~~~-~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLv 414 (652)
.+-.+....| +..++.++. ...++||||..+..++.+.++|- .+..+||+-.|++|...++.|+.|+.+|||
T Consensus 400 evEyVkqEaK---iVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLV 476 (610)
T KOG0341|consen 400 EVEYVKQEAK---IVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLV 476 (610)
T ss_pred HHHHHHhhhh---hhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEE
Confidence 3222333333 344444443 45799999999999999999875 678899999999999999999999999999
Q ss_pred EccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHhcc
Q 006272 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNNS 483 (652)
Q Consensus 415 aT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 483 (652)
|||+++.|||+|++.||||||+|..++.|+||+|||||.|+.+...- +.+........-.++.+|.+.
T Consensus 477 ATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATT-fINK~~~esvLlDLK~LL~Ea 544 (610)
T KOG0341|consen 477 ATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATT-FINKNQEESVLLDLKHLLQEA 544 (610)
T ss_pred EecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeee-eecccchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987644 445555555555666666653
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.4e-59 Score=504.31 Aligned_cols=348 Identities=33% Similarity=0.520 Sum_probs=303.7
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 006272 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (652)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (652)
.|++|+|++.+++.|.+.||..||++|.++|+.++.|+|++++||||||||++|++|+++.+...... ....++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~------~~~~~~ 75 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR------KSGPPR 75 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc------CCCCce
Confidence 58999999999999999999999999999999999999999999999999999999999998753221 123468
Q ss_pred EEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCc
Q 006272 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (652)
Q Consensus 190 ~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDE 269 (652)
+|||+||++||.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|++++....+.+.++++|||||
T Consensus 76 ~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 76 ILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred EEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred chhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCCh-HHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCc-h
Q 006272 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS-WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS-S 347 (652)
Q Consensus 270 ah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~ 347 (652)
||+|++++|...+..+...++. ..|+++||||++. .+..+...++ ..+..+..... ......+.++++.+.. .
T Consensus 156 ah~~l~~~~~~~~~~i~~~~~~--~~q~~~~SAT~~~~~~~~~~~~~~-~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~ 230 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAETRW--RKQTLLFSATLEGDAVQDFAERLL-NDPVEVEAEPS--RRERKKIHQWYYRADDLE 230 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhCcc--ccEEEEEEeecCHHHHHHHHHHHc-cCCEEEEecCC--cccccCceEEEEEeCCHH
Confidence 9999999999999999998876 6799999999985 4667777666 55565555432 2334556777666553 5
Q ss_pred hhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCC
Q 006272 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (652)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gl 423 (652)
.+..++..++... ...++||||+++..|+.++..|. .+..+||+|++.+|..+++.|++|+++|||||+++++||
T Consensus 231 ~k~~~l~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~Gi 309 (434)
T PRK11192 231 HKTALLCHLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGI 309 (434)
T ss_pred HHHHHHHHHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCc
Confidence 6777777777653 46799999999999999999997 578899999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchH
Q 006272 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIP 470 (652)
Q Consensus 424 di~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~ 470 (652)
|+|+|++|||||+|.+...|+||+|||||+|..+.++++ +...+..
T Consensus 310 Dip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l-~~~~d~~ 355 (434)
T PRK11192 310 DIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISL-VEAHDHL 355 (434)
T ss_pred cCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEE-ecHHHHH
Confidence 999999999999999999999999999999988765544 4444333
No 26
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-60 Score=467.13 Aligned_cols=354 Identities=34% Similarity=0.535 Sum_probs=316.3
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCC
Q 006272 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (652)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 185 (652)
.....|..|+++..|..++.+.-|.+|||+|.+++|..+.|+||+..|.||||||.||+.|++-+++..+... .+
T Consensus 220 rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~-----~g 294 (731)
T KOG0339|consen 220 RPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK-----PG 294 (731)
T ss_pred CCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc-----CC
Confidence 3446788899999999999999999999999999999999999999999999999999999999988765432 36
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEE
Q 006272 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (652)
Q Consensus 186 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~l 265 (652)
.+|..||++||||||.||+.++++|++..+++++++|||.+...|...|..++.|||||||||++++..+..++.+++||
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCC
Q 006272 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (652)
Q Consensus 266 ViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 345 (652)
||||||+|+++||..++..|..++.. .+|+|+||||++..+..+++.+| .++..+... +.......|.|.+..|+
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirp--drQtllFsaTf~~kIe~lard~L-~dpVrvVqg--~vgean~dITQ~V~V~~ 449 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRP--DRQTLLFSATFKKKIEKLARDIL-SDPVRVVQG--EVGEANEDITQTVSVCP 449 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCC--cceEEEeeccchHHHHHHHHHHh-cCCeeEEEe--ehhccccchhheeeecc
Confidence 99999999999999999999999987 88999999999999999999999 455444333 44455667888777776
Q ss_pred ch-hhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccc
Q 006272 346 SS-ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (652)
Q Consensus 346 ~~-~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~ 420 (652)
+. .|...|..-|......+++|||+.-+..++.++..|. +|..+||+|.|.+|.+++..|+.+...||||||+++
T Consensus 450 s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaa 529 (731)
T KOG0339|consen 450 SEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAA 529 (731)
T ss_pred CcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhh
Confidence 54 4555555444444577899999999999999999987 789999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchH
Q 006272 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIP 470 (652)
Q Consensus 421 ~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~ 470 (652)
||+||+++..|||||+-.+++.|+||+|||||+|..+.. .+++.+.+..
T Consensus 530 rgldI~~ikTVvnyD~ardIdththrigrtgRag~kGva-yTlvTeKDa~ 578 (731)
T KOG0339|consen 530 RGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVA-YTLVTEKDAE 578 (731)
T ss_pred cCCCccccceeecccccchhHHHHHHhhhccccccccee-eEEechhhHH
Confidence 999999999999999999999999999999999988554 4455554444
No 27
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-60 Score=468.99 Aligned_cols=365 Identities=28% Similarity=0.448 Sum_probs=308.1
Q ss_pred CCCcccccCCCHHHHH----------HHHHCCCCCChHHHHHHHHHHhc---------CCcEEEEccCCCCchhhhHHHH
Q 006272 107 HPNAVSRFRISVPLRE----------KLKSKGIESLFPIQAMTFDMVLD---------GSDLVGRARTGQGKTLAFVLPI 167 (652)
Q Consensus 107 ~~~~~~~~~l~~~l~~----------~l~~~g~~~~~~~Q~~~i~~~l~---------~~dvl~~a~TGsGKTl~~~lpi 167 (652)
.-..|+.++++..+.. .|.+++++.++|+|..++|+++. .+|++|.||||||||+||.|||
T Consensus 125 slq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPI 204 (620)
T KOG0350|consen 125 SLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPI 204 (620)
T ss_pred ceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHH
Confidence 3345667777766544 48999999999999999999962 4799999999999999999999
Q ss_pred HHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcC-C----CcEEE
Q 006272 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK-G----IDVVI 242 (652)
Q Consensus 168 l~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~-~----~~Ilv 242 (652)
++.|...+. +..|||||+||++|+.||++.|.+++...++.|+.+.|..+...+...+.. . ++|+|
T Consensus 205 VQ~L~~R~v---------~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlV 275 (620)
T KOG0350|consen 205 VQLLSSRPV---------KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILV 275 (620)
T ss_pred HHHHccCCc---------cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEE
Confidence 999987643 336899999999999999999999999999999999999999988888864 2 48999
Q ss_pred eCcHHHHHHHHh-CCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCC-----------------------------
Q 006272 243 GTPGRIKDHIER-GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA----------------------------- 292 (652)
Q Consensus 243 ~Tp~rl~~~l~~-~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~----------------------------- 292 (652)
+|||||.+||.. ..++|.+++|+||||||+|++..|..|+..++..+...
T Consensus 276 aTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~ 355 (620)
T KOG0350|consen 276 ATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLG 355 (620)
T ss_pred cCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcC
Confidence 999999999984 78999999999999999999999999998887766432
Q ss_pred ---CCceEEEEcccCChHHHHHHHHhcccCCeEEEEcc--CcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEE
Q 006272 293 ---NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG--NEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367 (652)
Q Consensus 293 ---~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~i 367 (652)
++.+.++||||+...-..+....+ ..|....+.. ......+..+.+..+.+....+...++.++..+ ...++|
T Consensus 356 ~~~~~l~kL~~satLsqdP~Kl~~l~l-~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~l 433 (620)
T KOG0350|consen 356 KLYPPLWKLVFSATLSQDPSKLKDLTL-HIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTL 433 (620)
T ss_pred CcCchhHhhhcchhhhcChHHHhhhhc-CCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEE
Confidence 134578899998877766666665 3444443332 234566677888888888888888899999887 568999
Q ss_pred EEecchhHHHHHHHhcC--------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCC
Q 006272 368 IFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439 (652)
Q Consensus 368 VF~~s~~~~~~l~~~l~--------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s 439 (652)
+|+++...+.+|+..|. .+..+.|.++...|...+..|..|.+.||||||+++||||+.+|+.|||||+|.+
T Consensus 434 cf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~ 513 (620)
T KOG0350|consen 434 CFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPAS 513 (620)
T ss_pred EEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCch
Confidence 99999999999999886 5678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHhcc
Q 006272 440 VEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNNS 483 (652)
Q Consensus 440 ~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 483 (652)
..+|+||+|||||||..|.+ +.+........|.++++......
T Consensus 514 ~ktyVHR~GRTARAgq~G~a-~tll~~~~~r~F~klL~~~~~~d 556 (620)
T KOG0350|consen 514 DKTYVHRAGRTARAGQDGYA-ITLLDKHEKRLFSKLLKKTNLWD 556 (620)
T ss_pred hhHHHHhhcccccccCCceE-EEeeccccchHHHHHHHHhcccC
Confidence 99999999999999988765 55566666677777777665533
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-58 Score=501.49 Aligned_cols=369 Identities=33% Similarity=0.519 Sum_probs=315.5
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCC
Q 006272 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (652)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 184 (652)
......|.+++|++.++++|.+.||..||++|.++|+.++.|+|+|+++|||||||++|++|+++.+........ ..
T Consensus 83 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~---~~ 159 (475)
T PRK01297 83 QEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKE---RY 159 (475)
T ss_pred ccCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccc---cc
Confidence 344567899999999999999999999999999999999999999999999999999999999999876532111 11
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhc-CCCcEEEeCcHHHHHHHHhCCcCCCCce
Q 006272 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (652)
Q Consensus 185 ~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~ 263 (652)
...+++|||+||++||.|+++.++.+....++.+..++|+.....+...+. ..++|+|+||++|++++.+..+.+++++
T Consensus 160 ~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 160 MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred cCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 225689999999999999999999999889999999999998887777764 5689999999999999988888899999
Q ss_pred EEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEcc
Q 006272 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (652)
Q Consensus 264 ~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 343 (652)
+|||||||++++++|...+..|+..++.....|++++|||++..+..++..++ ..+..+.+.... .....+.+.++.
T Consensus 240 ~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~~~~~~~ 316 (475)
T PRK01297 240 VMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWT-TDPAIVEIEPEN--VASDTVEQHVYA 316 (475)
T ss_pred eEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhc-cCCEEEEeccCc--CCCCcccEEEEE
Confidence 99999999999999999999999998765567999999999999999888887 455555543322 334456666666
Q ss_pred CCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEcccc
Q 006272 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (652)
Q Consensus 344 ~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~ 419 (652)
+...++...+..++... ...++||||+++..|+.++..|. .+..+||++++.+|..+++.|++|+++|||||+++
T Consensus 317 ~~~~~k~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l 395 (475)
T PRK01297 317 VAGSDKYKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVA 395 (475)
T ss_pred ecchhHHHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcccc
Confidence 67777778888877654 45799999999999999999986 57789999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHhc
Q 006272 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNN 482 (652)
Q Consensus 420 ~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 482 (652)
++|||+|+|++||+|++|.|..+|+||+|||||.|..+.++++..+ + ..++...+++++..
T Consensus 396 ~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~-~-d~~~~~~~~~~~~~ 456 (475)
T PRK01297 396 GRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGE-D-DAFQLPEIEELLGR 456 (475)
T ss_pred ccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecH-H-HHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999998766555443 3 34455566666654
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-59 Score=443.71 Aligned_cols=359 Identities=31% Similarity=0.442 Sum_probs=314.5
Q ss_pred CCCCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCccc
Q 006272 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181 (652)
Q Consensus 104 ~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~--~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~ 181 (652)
......+|++|+|.|++++.|..++|..|+.||+.++|.++.. +++|.++..|||||.||.|.+|.++...
T Consensus 85 PlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~------- 157 (477)
T KOG0332|consen 85 PLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD------- 157 (477)
T ss_pred CccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-------
Confidence 3445578999999999999999999999999999999999976 8999999999999999999999888654
Q ss_pred CCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCcCCC
Q 006272 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLS 260 (652)
Q Consensus 182 ~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~-~~~~l~ 260 (652)
...|++++|+||||||.|+-+.+.+.++++++......-+.... +.-.-..+|+|+|||.+++++.. ..+++.
T Consensus 158 ---~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~---rG~~i~eqIviGTPGtv~Dlm~klk~id~~ 231 (477)
T KOG0332|consen 158 ---VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK---RGNKLTEQIVIGTPGTVLDLMLKLKCIDLE 231 (477)
T ss_pred ---ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc---cCCcchhheeeCCCccHHHHHHHHHhhChh
Confidence 34678999999999999999999999999988887777665221 11111268999999999999988 888999
Q ss_pred CceEEecCcchhhhhc-CcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceE
Q 006272 261 SLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339 (652)
Q Consensus 261 ~~~~lViDEah~~l~~-gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 339 (652)
.++++|+||||.|++. ||.++-..|...+|. +.|+++||||+...+..++.+++ +++..+.+...+ ....++.+
T Consensus 232 kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~--~~QllLFSATf~e~V~~Fa~kiv-pn~n~i~Lk~ee--l~L~~IkQ 306 (477)
T KOG0332|consen 232 KIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR--NQQLLLFSATFVEKVAAFALKIV-PNANVIILKREE--LALDNIKQ 306 (477)
T ss_pred hceEEEecchhhhhhcccccccchhhhhhcCC--cceEEeeechhHHHHHHHHHHhc-CCCceeeeehhh--ccccchhh
Confidence 9999999999999974 799999999999986 88999999999999999999999 677777665543 66678999
Q ss_pred EEccCCc-hhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEE
Q 006272 340 IVLPCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414 (652)
Q Consensus 340 ~~~~~~~-~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLv 414 (652)
+|+.|.. .+|+.+|.++.-.. .-++.||||.|+..|.+|+..|. .+..+||+|.-.+|..+++.|+.|..+|||
T Consensus 307 lyv~C~~~~~K~~~l~~lyg~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLi 385 (477)
T KOG0332|consen 307 LYVLCACRDDKYQALVNLYGLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLI 385 (477)
T ss_pred heeeccchhhHHHHHHHHHhhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEE
Confidence 9998876 46788888866555 56899999999999999999987 789999999999999999999999999999
Q ss_pred EccccccCCCCCCccEEEEcCCCC------CHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHhc
Q 006272 415 ATNVAARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNN 482 (652)
Q Consensus 415 aT~~~~~Gldi~~v~~VI~~~~p~------s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 482 (652)
+|++++||||++.|++|||||+|. +.++|+||+|||||.|+.|..+ -++++.....+...++++++.
T Consensus 386 tTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~-n~v~~~~s~~~mn~iq~~F~~ 458 (477)
T KOG0332|consen 386 TTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAI-NLVDDKDSMNIMNKIQKHFNM 458 (477)
T ss_pred EechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEE-EeecccCcHHHHHHHHHHHhh
Confidence 999999999999999999999996 7899999999999999998764 477777777788888888764
No 30
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-57 Score=488.17 Aligned_cols=362 Identities=34% Similarity=0.561 Sum_probs=322.7
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
....|...+++..++..|+++||..|||||.+|||+|+.|+|||++|.||||||++|+||++.++...+. .....
T Consensus 363 pv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~-----~~~gd 437 (997)
T KOG0334|consen 363 PVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP-----LEEGD 437 (997)
T ss_pred ccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC-----hhhCC
Confidence 3467888999999999999999999999999999999999999999999999999999999966655432 22356
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcC---CCCce
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID---LSSLK 263 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~---l~~~~ 263 (652)
+|.+||++|||+||.|++++++.|+..+++.++++||+.....++..++.++.|+||||||+++++-.+.-. +..+.
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999765444 45555
Q ss_pred EEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEcc
Q 006272 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (652)
Q Consensus 264 ~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 343 (652)
+||+||||+|++++|.+++..|+..++. .+|+++||||+|..+..++...++ .|..+.+.. .......+.+.+..
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrp--drQtvlfSatfpr~m~~la~~vl~-~Pveiiv~~--~svV~k~V~q~v~V 592 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRP--DRQTVLFSATFPRSMEALARKVLK-KPVEIIVGG--RSVVCKEVTQVVRV 592 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcch--hhhhhhhhhhhhHHHHHHHHHhhc-CCeeEEEcc--ceeEeccceEEEEE
Confidence 9999999999999999999999999976 789999999999999999999996 565555543 34666778888888
Q ss_pred CC-chhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccc
Q 006272 344 CS-SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418 (652)
Q Consensus 344 ~~-~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~ 418 (652)
|. ..+|+..|..+|..+...+++||||.....|..|.+.|. .+..|||+.+|.+|..+++.|+++.+.+||||++
T Consensus 593 ~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsv 672 (997)
T KOG0334|consen 593 CAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSV 672 (997)
T ss_pred ecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhh
Confidence 88 889999999999988889999999999999999999987 4556999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHH
Q 006272 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEEL 479 (652)
Q Consensus 419 ~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~ 479 (652)
++||||++++.+|||||+|...+.|+||+|||||+|..+ ..++|+.++...+--.++..+
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg-~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG-AAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccc-eeEEEeChHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999998 667777776655555444444
No 31
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.7e-55 Score=465.52 Aligned_cols=349 Identities=31% Similarity=0.504 Sum_probs=300.1
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
...|+++++++.+.+.|.+.||..|+|+|.++|+.++.++|++++||||||||++|++|+++.+... ...
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~----------~~~ 96 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD----------LNA 96 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC----------CCC
Confidence 4679999999999999999999999999999999999999999999999999999999999887532 124
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEec
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lVi 267 (652)
.++|||+||++|+.|+.+.+..++....+.+..++|+.....+...+..+++|+|+||++|.+++.+..+.++++++|||
T Consensus 97 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvVi 176 (401)
T PTZ00424 97 CQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFIL 176 (401)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEE
Confidence 57999999999999999999999988888999999999888888888888999999999999999988888999999999
Q ss_pred CcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCc-
Q 006272 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS- 346 (652)
Q Consensus 268 DEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~- 346 (652)
||||++++.+|...+..++..++. ..|++++|||+|..+..+...++. .+..+.+... ......+.++++.+..
T Consensus 177 DEah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 251 (401)
T PTZ00424 177 DEADEMLSRGFKGQIYDVFKKLPP--DVQVALFSATMPNEILELTTKFMR-DPKRILVKKD--ELTLEGIRQFYVAVEKE 251 (401)
T ss_pred ecHHHHHhcchHHHHHHHHhhCCC--CcEEEEEEecCCHHHHHHHHHHcC-CCEEEEeCCC--CcccCCceEEEEecChH
Confidence 999999999999999999988876 789999999999998888888873 4444433222 2233456666665544
Q ss_pred hhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccC
Q 006272 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (652)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 422 (652)
..+...+..++... ...++||||+|+..++.++..|. .+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 252 ~~~~~~l~~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~G 330 (401)
T PTZ00424 252 EWKFDTLCDLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARG 330 (401)
T ss_pred HHHHHHHHHHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCC
Confidence 33455566665544 45789999999999999999886 68889999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHH
Q 006272 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFK 473 (652)
Q Consensus 423 ldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~ 473 (652)
||+|++++||+|++|.+..+|+||+||+||.|..|.+++ ++.+.+...+.
T Consensus 331 iDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~-l~~~~~~~~~~ 380 (401)
T PTZ00424 331 IDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAIN-FVTPDDIEQLK 380 (401)
T ss_pred cCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEE-EEcHHHHHHHH
Confidence 999999999999999999999999999999998876544 45555555444
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-56 Score=430.20 Aligned_cols=347 Identities=30% Similarity=0.519 Sum_probs=313.7
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
-.+|++++|++.|++.+...||++|+.||+.||..+..|.|+++++++|||||.+|++++++.+.... ..
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~----------ke 94 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV----------KE 94 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch----------HH
Confidence 35799999999999999999999999999999999999999999999999999999999999885432 33
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhc-CCCcEEEeCcHHHHHHHHhCCcCCCCceEEe
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lV 266 (652)
.+||+++|||+||.|+......++...++++..+.||.....+...+. ..++|+|+||||+.+++....+....++++|
T Consensus 95 ~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfv 174 (397)
T KOG0327|consen 95 TQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFV 174 (397)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEe
Confidence 469999999999999999999999999999999999999886666555 4689999999999999999999899999999
Q ss_pred cCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCc
Q 006272 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (652)
Q Consensus 267 iDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (652)
+||||.|+..||.+++..|+..++. +.|++++|||+|.++....++|+ .++..|.+...+ .+...++|+++.+..
T Consensus 175 lDEaDEmLs~gfkdqI~~if~~lp~--~vQv~l~SAT~p~~vl~vt~~f~-~~pv~i~vkk~~--ltl~gikq~~i~v~k 249 (397)
T KOG0327|consen 175 LDEADEMLSRGFKDQIYDIFQELPS--DVQVVLLSATMPSDVLEVTKKFM-REPVRILVKKDE--LTLEGIKQFYINVEK 249 (397)
T ss_pred ecchHhhhccchHHHHHHHHHHcCc--chhheeecccCcHHHHHHHHHhc-cCceEEEecchh--hhhhheeeeeeeccc
Confidence 9999999999999999999999998 88999999999999999999999 677777766554 557788999999888
Q ss_pred hhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccC
Q 006272 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (652)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 422 (652)
..|+..|+++.+ .-...+|||||++.+..+...|. .+..+|++|.+.+|..++..|+.|..+|||.|+.++||
T Consensus 250 ~~k~~~l~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~arg 326 (397)
T KOG0327|consen 250 EEKLDTLCDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARG 326 (397)
T ss_pred cccccHHHHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccc
Confidence 889999999888 34789999999999999999997 67899999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHH
Q 006272 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFK 473 (652)
Q Consensus 423 ldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~ 473 (652)
||+..+..||||++|...++|+||+||+||.|.++.. +.++.+.....++
T Consensus 327 idv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~-in~v~~~d~~~lk 376 (397)
T KOG0327|consen 327 IDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVA-INFVTEEDVRDLK 376 (397)
T ss_pred cchhhcceeeeeccccchhhhhhhcccccccCCCcee-eeeehHhhHHHHH
Confidence 9999999999999999999999999999999998764 4444444443333
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-56 Score=430.21 Aligned_cols=352 Identities=31% Similarity=0.448 Sum_probs=319.7
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
...|..++|+..+.+++.+.||..|||+|+++||.+|+++|++..|.||||||.||++|++++|.... ..+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s---------~~g 90 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS---------QTG 90 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc---------ccc
Confidence 46799999999999999999999999999999999999999999999999999999999999998754 235
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEec
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lVi 267 (652)
.++||++|||+||.|+.+.++.++..+++++.+++||.+..+|...+..++|||++|||+++.+.-.-.+.|+.+.|||+
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 68999999999999999999999999999999999999999999999999999999999999888777789999999999
Q ss_pred CcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCch
Q 006272 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (652)
Q Consensus 268 DEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (652)
||||+++++||.+++..++..++. ..|+++||||+|..+..+++.-+ .+|..+.+.-.. .....++..+..+...
T Consensus 171 dEadrlfemgfqeql~e~l~rl~~--~~QTllfSatlp~~lv~fakaGl-~~p~lVRldvet--kise~lk~~f~~~~~a 245 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRLPE--SRQTLLFSATLPRDLVDFAKAGL-VPPVLVRLDVET--KISELLKVRFFRVRKA 245 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhCCC--cceEEEEeccCchhhHHHHHccC-CCCceEEeehhh--hcchhhhhheeeeccH
Confidence 999999999999999999999998 67999999999999999988888 677777765433 4556777778888899
Q ss_pred hhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCC
Q 006272 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (652)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gl 423 (652)
+|...|..++.......++||||.|+..++.+...|+ .+..++|.|++..|..-+..|+.++..+||.||+++||+
T Consensus 246 ~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~ 325 (529)
T KOG0337|consen 246 EKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGL 325 (529)
T ss_pred HHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccC
Confidence 9999999988877666789999999999999999998 677899999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHH
Q 006272 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS 474 (652)
Q Consensus 424 di~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~ 474 (652)
|||-.+.|||||+|.+...|+||+||++|+|..+. .+.++.+.+++++.+
T Consensus 326 diplldnvinyd~p~~~klFvhRVgr~aragrtg~-aYs~V~~~~~~yl~D 375 (529)
T KOG0337|consen 326 DIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGR-AYSLVASTDDPYLLD 375 (529)
T ss_pred CCccccccccccCCCCCceEEEEecchhhccccce-EEEEEecccchhhhh
Confidence 99999999999999999999999999999997754 345555566665543
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=7.1e-55 Score=442.22 Aligned_cols=359 Identities=26% Similarity=0.432 Sum_probs=320.8
Q ss_pred CCCCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCC
Q 006272 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183 (652)
Q Consensus 104 ~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~ 183 (652)
....+..|+.+-|...++..|+..+|..||+||..|||+++.+-|+||+|..|+|||++|.+.+++.+...
T Consensus 20 ~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~--------- 90 (980)
T KOG4284|consen 20 QSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR--------- 90 (980)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc---------
Confidence 34556779999999999999999999999999999999999999999999999999999999999888654
Q ss_pred CCCCCeEEEEeccHHHHHHHHHHHHHHhc-CCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCc
Q 006272 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (652)
Q Consensus 184 ~~~~~~~lil~PtreLa~q~~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~ 262 (652)
...++++||+||||+|.||.+.+..++. ..+++|.+++||+.......+++. ++|+|+||||+..+++.+.++.+.+
T Consensus 91 -~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~v 168 (980)
T KOG4284|consen 91 -SSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHV 168 (980)
T ss_pred -cCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccce
Confidence 3467899999999999999999999987 468999999999999888777776 8899999999999999999999999
Q ss_pred eEEecCcchhhhh-cCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEE
Q 006272 263 KFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341 (652)
Q Consensus 263 ~~lViDEah~~l~-~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 341 (652)
+++||||||.+++ ..|..++..|+..+|. .+|+++||||.|..+.....+|| .++..|.+... ......++|++
T Consensus 169 rlfVLDEADkL~~t~sfq~~In~ii~slP~--~rQv~a~SATYp~nLdn~Lsk~m-rdp~lVr~n~~--d~~L~GikQyv 243 (980)
T KOG4284|consen 169 RLFVLDEADKLMDTESFQDDINIIINSLPQ--IRQVAAFSATYPRNLDNLLSKFM-RDPALVRFNAD--DVQLFGIKQYV 243 (980)
T ss_pred eEEEeccHHhhhchhhHHHHHHHHHHhcch--hheeeEEeccCchhHHHHHHHHh-cccceeecccC--Cceeechhhee
Confidence 9999999999998 5699999999999998 78999999999999999999999 67777776543 35566788887
Q ss_pred ccCCch--------hhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCC
Q 006272 342 LPCSSS--------ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409 (652)
Q Consensus 342 ~~~~~~--------~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~ 409 (652)
+..... .++..|..++... +-.+.||||+....|+-++..|. .|.++.|.|+|.+|..+++.+++-.
T Consensus 244 ~~~~s~nnsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~ 322 (980)
T KOG4284|consen 244 VAKCSPNNSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFR 322 (980)
T ss_pred eeccCCcchHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhce
Confidence 754432 3556667777666 55789999999999999999998 6889999999999999999999999
Q ss_pred ceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHH
Q 006272 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEEL 479 (652)
Q Consensus 410 ~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~ 479 (652)
++|||+||+.+||||-++|++|||.|+|.+.++|.||||||||.|..|+.+-++.+..+++.|..+...+
T Consensus 323 ~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m~~ri 392 (980)
T KOG4284|consen 323 VRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAMAYRI 392 (980)
T ss_pred EEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998877777878878877765544
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.8e-53 Score=474.67 Aligned_cols=345 Identities=20% Similarity=0.292 Sum_probs=267.6
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEe
Q 006272 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (652)
Q Consensus 115 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~ 194 (652)
.+++.+.+.|.+.||..||++|.++|+.+++|+|+++++|||||||+||++|+++.+... ..+++|||+
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-----------~~~~aL~l~ 88 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-----------PRATALYLA 88 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-----------CCcEEEEEc
Confidence 389999999999999999999999999999999999999999999999999999998753 235799999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhC----CcCCCCceEEecCcc
Q 006272 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG----NIDLSSLKFRVLDEA 270 (652)
Q Consensus 195 PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~----~~~l~~~~~lViDEa 270 (652)
|||+||.|+.+.++.++ ..++++..+.|+.+. .+...+...++|+|+||++|...+... ...++++++||||||
T Consensus 89 PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 89 PTKALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred ChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 99999999999999987 457888877777764 445666777999999999997544321 123789999999999
Q ss_pred hhhhhcCcHHHHHHHHHhccC-----CCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCC
Q 006272 271 DEMLRMGFVEDVELILGKVED-----ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (652)
Q Consensus 271 h~~l~~gf~~~~~~i~~~~~~-----~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 345 (652)
|+|.+ .|..++..++..+.. ..++|+++||||+++... ++..++.. +..+ +.... .........++...
T Consensus 167 h~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~-~~~~-i~~~~--~~~~~~~~~~~~p~ 240 (742)
T TIGR03817 167 HSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGA-PVVA-VTEDG--SPRGARTVALWEPP 240 (742)
T ss_pred hhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCC-CeEE-ECCCC--CCcCceEEEEecCC
Confidence 99976 477776666655421 236899999999998765 56666643 3221 22111 11111222221111
Q ss_pred ----------------chhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC------------CCcccccccchHH
Q 006272 346 ----------------SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------------GARALHGDIQQSQ 397 (652)
Q Consensus 346 ----------------~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~------------~~~~lh~~~~~~~ 397 (652)
...+...+..++. .+.++||||+|++.|+.++..|. .+..|||++++.+
T Consensus 241 ~~~~~~~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~e 317 (742)
T TIGR03817 241 LTELTGENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPED 317 (742)
T ss_pred ccccccccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHH
Confidence 1233444555544 45799999999999999998753 4678999999999
Q ss_pred HHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHH
Q 006272 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAE 477 (652)
Q Consensus 398 R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~ 477 (652)
|..+++.|++|++++||||+++++||||++|++||||++|.+.++|+||+|||||.|..+..+++..++....++....+
T Consensus 318 R~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~ 397 (742)
T TIGR03817 318 RRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPE 397 (742)
T ss_pred HHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHH
Confidence 99999999999999999999999999999999999999999999999999999999988876655443333344455455
Q ss_pred HHHh
Q 006272 478 ELLN 481 (652)
Q Consensus 478 ~~~~ 481 (652)
.+++
T Consensus 398 ~~~~ 401 (742)
T TIGR03817 398 ALFD 401 (742)
T ss_pred HHhc
Confidence 5554
No 36
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-53 Score=428.11 Aligned_cols=365 Identities=32% Similarity=0.472 Sum_probs=301.2
Q ss_pred cCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEE
Q 006272 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (652)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 193 (652)
+..+..+++.+...+|..|+|+|.+|||.++.++|+++|||||||||++|.+|++++|..... .....+.+++|+
T Consensus 141 ~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-----~~~~~gl~a~Il 215 (593)
T KOG0344|consen 141 YSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-----EKHKVGLRALIL 215 (593)
T ss_pred hhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc-----ccCccceEEEEe
Confidence 457889999999999999999999999999999999999999999999999999999976543 112456789999
Q ss_pred eccHHHHHHHHHHHHHHh--cCCCceEEEEeCCcch-HHHHHHhcCCCcEEEeCcHHHHHHHHhCC--cCCCCceEEecC
Q 006272 194 LPTRELAKQVHEDFDVYG--GAVGLTSCCLYGGAPY-HAQEFKLKKGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLD 268 (652)
Q Consensus 194 ~PtreLa~q~~~~~~~~~--~~~~~~~~~~~gg~~~-~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~--~~l~~~~~lViD 268 (652)
.|||+||.|++.++..+. ...++.+..+...... ..........++|+|+||-++..++..+. ++++.+.++|+|
T Consensus 216 ~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~d 295 (593)
T KOG0344|consen 216 SPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVD 295 (593)
T ss_pred cchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeec
Confidence 999999999999999998 5566655544433221 12222223458999999999999998865 789999999999
Q ss_pred cchhhhhc-CcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccC-Cc
Q 006272 269 EADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC-SS 346 (652)
Q Consensus 269 Eah~~l~~-gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~ 346 (652)
|||++++. .|..++..|+..+.. +.+.+-+||||++..+..++...+ .+...+.+.. .+.....+.|..+.| +.
T Consensus 296 EaD~lfe~~~f~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE~~~~i~-~~~~~vivg~--~~sa~~~V~QelvF~gse 371 (593)
T KOG0344|consen 296 EADLLFEPEFFVEQLADIYSACQS-PDIRVALFSATISVYVEEWAELIK-SDLKRVIVGL--RNSANETVDQELVFCGSE 371 (593)
T ss_pred hHHhhhChhhHHHHHHHHHHHhcC-cchhhhhhhccccHHHHHHHHHhh-ccceeEEEec--chhHhhhhhhhheeeecc
Confidence 99999999 999999999999976 368888999999999999999887 4555444432 233345566555444 45
Q ss_pred hhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC-----CCcccccccchHHHHHHHhhhcCCCceEEEEcccccc
Q 006272 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (652)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~-----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 421 (652)
..+...+..++... -..++|||+.+.+.|.+|+..|. .+.++||..++.+|+.++++|+.|+++|||||++++|
T Consensus 372 ~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~R 450 (593)
T KOG0344|consen 372 KGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLAR 450 (593)
T ss_pred hhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhc
Confidence 66777888888776 56899999999999999999994 7899999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHhccCCCHHHH
Q 006272 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAEL 490 (652)
Q Consensus 422 Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (652)
|||+.+|++|||||+|.+.-+|+||+||+||+|..+.+ |+++.+..++.....+ +.+...|.+..+-
T Consensus 451 GiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~A-itfytd~d~~~ir~ia-e~~~~sG~evpe~ 517 (593)
T KOG0344|consen 451 GIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKA-ITFYTDQDMPRIRSIA-EVMEQSGCEVPEK 517 (593)
T ss_pred cccccCcceEEecCCCchhHHHHHHhhccCCCCCCcce-EEEeccccchhhhhHH-HHHHHcCCcchHH
Confidence 99999999999999999999999999999999987655 5566667777766555 4444567766554
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=5.3e-51 Score=451.35 Aligned_cols=326 Identities=22% Similarity=0.258 Sum_probs=254.6
Q ss_pred ccCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEE
Q 006272 113 RFRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191 (652)
Q Consensus 113 ~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~l 191 (652)
.|+.+..+...++. +||..|+|+|.++|+.++.|+|+|+++|||+|||+||++|++.. . ..+|
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--~--------------GiTL 504 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--P--------------GITL 504 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--C--------------CcEE
Confidence 57788888877765 69999999999999999999999999999999999999999842 1 2489
Q ss_pred EEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhc------CCCcEEEeCcHHHHH--HHHhC--Cc-CCC
Q 006272 192 VLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK------KGIDVVIGTPGRIKD--HIERG--NI-DLS 260 (652)
Q Consensus 192 il~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~------~~~~Ilv~Tp~rl~~--~l~~~--~~-~l~ 260 (652)
||+|+++|+.++...+.. .++....+.++.....+...+. ..++|||+||++|.. .+.+. .+ ...
T Consensus 505 VISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 999999999866555544 4688889999988776655443 468999999999863 22211 11 234
Q ss_pred CceEEecCcchhhhhcC--cHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCce
Q 006272 261 SLKFRVLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338 (652)
Q Consensus 261 ~~~~lViDEah~~l~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 338 (652)
.+.+|||||||++++|| |++.+..+-......+.+++++||||++..+...+...+......+.... ...+++.
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S----f~RpNL~ 656 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS----FNRPNLW 656 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc----cCccceE
Confidence 58999999999999998 88888765322222336789999999999998877776643333222211 2223443
Q ss_pred EEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEE
Q 006272 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414 (652)
Q Consensus 339 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLv 414 (652)
..++.. .......+..++.......+.||||+|+..|+.++..|. .+..|||+|++.+|..+++.|..|+++|||
T Consensus 657 y~Vv~k-~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLV 735 (1195)
T PLN03137 657 YSVVPK-TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIIC 735 (1195)
T ss_pred EEEecc-chhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 333321 112233444555444345789999999999999999987 688999999999999999999999999999
Q ss_pred EccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeec
Q 006272 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQ 463 (652)
Q Consensus 415 aT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~ 463 (652)
||++++||||+|+|++||||++|.|++.|+||+|||||+|..+.+++++
T Consensus 736 ATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 736 ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred EechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9999999999999999999999999999999999999999887766554
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-49 Score=428.84 Aligned_cols=325 Identities=22% Similarity=0.272 Sum_probs=247.4
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHH
Q 006272 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (652)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~ 205 (652)
.+||..|+|+|.++|+.+++++|+++++|||||||++|++|++.. . ..+|||+||++|+.|+++
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--~--------------~~~lVi~P~~~L~~dq~~ 69 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--D--------------GITLVISPLISLMEDQVL 69 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--C--------------CcEEEEecHHHHHHHHHH
Confidence 469999999999999999999999999999999999999998842 1 148999999999999999
Q ss_pred HHHHHhcCCCceEEEEeCCcchHHHHHH----hcCCCcEEEeCcHHHHHHH-HhCCc-CCCCceEEecCcchhhhhcC--
Q 006272 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFK----LKKGIDVVIGTPGRIKDHI-ERGNI-DLSSLKFRVLDEADEMLRMG-- 277 (652)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~----~~~~~~Ilv~Tp~rl~~~l-~~~~~-~l~~~~~lViDEah~~l~~g-- 277 (652)
.+..+ ++.+..+.++.....+... ....++|+++||+++.... ....+ .+.++++|||||||++++||
T Consensus 70 ~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 70 QLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 88764 5677777777665533322 2345899999999975432 11122 46789999999999999997
Q ss_pred cHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHH
Q 006272 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357 (652)
Q Consensus 278 f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 357 (652)
|...+..+.......+..++++||||+++.+...+...+......+..... ...++...+.... ......+..++
T Consensus 146 fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~----~r~nl~~~v~~~~-~~~~~~l~~~l 220 (470)
T TIGR00614 146 FRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF----DRPNLYYEVRRKT-PKILEDLLRFI 220 (470)
T ss_pred cHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC----CCCCcEEEEEeCC-ccHHHHHHHHH
Confidence 777776654333323367899999999998877666665333333322221 1223332222221 12233344444
Q ss_pred HhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEE
Q 006272 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ 433 (652)
Q Consensus 358 ~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~ 433 (652)
.....+..+||||+|++.|+.++..|. .+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|||
T Consensus 221 ~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~ 300 (470)
T TIGR00614 221 RKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH 300 (470)
T ss_pred HHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE
Confidence 433355677999999999999999996 6789999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHH
Q 006272 434 CEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAA 476 (652)
Q Consensus 434 ~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~ 476 (652)
|++|.|++.|+||+|||||.|..+.++++ +...+...+...+
T Consensus 301 ~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~-~~~~d~~~~~~~~ 342 (470)
T TIGR00614 301 YSLPKSMESYYQESGRAGRDGLPSECHLF-YAPADINRLRRLL 342 (470)
T ss_pred eCCCCCHHHHHhhhcCcCCCCCCceEEEE-echhHHHHHHHHH
Confidence 99999999999999999999988766554 4555555454444
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.9e-48 Score=427.69 Aligned_cols=335 Identities=19% Similarity=0.272 Sum_probs=253.4
Q ss_pred cCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEE
Q 006272 114 FRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192 (652)
Q Consensus 114 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~li 192 (652)
+++.....+.|++ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. . ..+||
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--~--------------g~tlV 70 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--D--------------GLTLV 70 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--C--------------CCEEE
Confidence 4455555666655 69999999999999999999999999999999999999999843 1 14899
Q ss_pred EeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHH----hcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecC
Q 006272 193 LLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK----LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (652)
Q Consensus 193 l~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~----~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViD 268 (652)
|+|+++|+.|+.+.+..+ ++.+..+.++......... .....+|+++||++|........+...++++||||
T Consensus 71 isPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVID 146 (607)
T PRK11057 71 VSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVD 146 (607)
T ss_pred EecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEe
Confidence 999999999999988864 4667777777665544322 23457999999999975333333445679999999
Q ss_pred cchhhhhcC--cHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCc
Q 006272 269 EADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (652)
Q Consensus 269 Eah~~l~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (652)
|||++++|| |.+.+..+.......+..++++||||++..+...+...+......+...... ..++...+. ..
T Consensus 147 EaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~----r~nl~~~v~--~~ 220 (607)
T PRK11057 147 EAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD----RPNIRYTLV--EK 220 (607)
T ss_pred CccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCC----CCcceeeee--ec
Confidence 999999987 7776655533322233678999999999987765555553333333332221 223322221 12
Q ss_pred hhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccC
Q 006272 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (652)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 422 (652)
......+..++... .+.++||||+|++.|+.++..|. .+..+||+|++.+|..+++.|+.|+++|||||+++++|
T Consensus 221 ~~~~~~l~~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~G 299 (607)
T PRK11057 221 FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMG 299 (607)
T ss_pred cchHHHHHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhcc
Confidence 22233344444433 56799999999999999999997 57899999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHH
Q 006272 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAA 476 (652)
Q Consensus 423 ldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~ 476 (652)
||+|+|++||||++|.|.++|+||+|||||.|..+.++ +++++.+...+...+
T Consensus 300 IDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~i-ll~~~~d~~~~~~~~ 352 (607)
T PRK11057 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM-LFYDPADMAWLRRCL 352 (607)
T ss_pred CCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEE-EEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999876654 455555555444433
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.6e-47 Score=437.04 Aligned_cols=348 Identities=20% Similarity=0.297 Sum_probs=254.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEec
Q 006272 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (652)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 195 (652)
+++.+.+.+.+ +|..|||+|.++|+.+++|+|++++||||||||++|++|+++.+....... ....++++|||+|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~----~~~~~~~~LyIsP 92 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREG----ELEDKVYCLYVSP 92 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcccc----CCCCCeEEEEEcC
Confidence 56777777666 799999999999999999999999999999999999999999887532110 1134578999999
Q ss_pred cHHHHHHHHHHHHH-------Hh----cCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCc--CCCC
Q 006272 196 TRELAKQVHEDFDV-------YG----GAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI--DLSS 261 (652)
Q Consensus 196 treLa~q~~~~~~~-------~~----~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~--~l~~ 261 (652)
||+|+.|+++.+.. ++ ... ++.+...+|+.+...+...+...++|+|+||++|..++....+ .+.+
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 99999999886542 22 223 6788999999998887777888899999999999888765433 4789
Q ss_pred ceEEecCcchhhhhcCcHHHHHHHHHhccC--CCCceEEEEcccCChHHHHHHHHhcccC-----CeEEEEccCcccccC
Q 006272 262 LKFRVLDEADEMLRMGFVEDVELILGKVED--ANKVQTLLFSATLPSWVKHISTKFLKSD-----KKTIDLVGNEKMKAS 334 (652)
Q Consensus 262 ~~~lViDEah~~l~~gf~~~~~~i~~~~~~--~~~~q~l~~SAT~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~ 334 (652)
+++|||||+|.+++..+...+..++..+.. ....|+++||||+++. ..+. .++... +..+.++... ....
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va-~~L~~~~~~~~~r~~~iv~~~-~~k~ 249 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVA-KFLVGYEDDGEPRDCEIVDAR-FVKP 249 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHH-HHhcCccccCCCCceEEEccC-CCcc
Confidence 999999999999987666655555444432 1268999999999863 2333 333211 1112221110 0000
Q ss_pred CCceEEE-----ccCCchhhhh-hHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----------CCcccccccchHHH
Q 006272 335 TNVRHIV-----LPCSSSARSQ-VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----------GARALHGDIQQSQR 398 (652)
Q Consensus 335 ~~~~~~~-----~~~~~~~~~~-~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----------~~~~lh~~~~~~~R 398 (652)
..+.... .......... ....+......+.++||||||+..|+.++..|. .+..+||+|++.+|
T Consensus 250 ~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R 329 (876)
T PRK13767 250 FDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVR 329 (876)
T ss_pred ceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHH
Confidence 1111100 0011111111 222222333356899999999999999998775 37889999999999
Q ss_pred HHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCC-cccceeeccCCcchHH
Q 006272 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV-EAAETITQVSDSVIPA 471 (652)
Q Consensus 399 ~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~-~~~~~i~~~~~~~~~~ 471 (652)
..+++.|++|.++|||||+++++|||+|+|++||+|+.|.++.+|+||+|||||.+. .....++..+..+...
T Consensus 330 ~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e 403 (876)
T PRK13767 330 LEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVE 403 (876)
T ss_pred HHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHH
Confidence 999999999999999999999999999999999999999999999999999999754 3444455455544433
No 41
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-49 Score=357.04 Aligned_cols=324 Identities=28% Similarity=0.432 Sum_probs=284.1
Q ss_pred CCCCCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccC
Q 006272 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182 (652)
Q Consensus 103 ~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~ 182 (652)
.-..+...|.+|-|.|++++++-..||+.|+.+|.++||...-|-|++++|..|.|||.+|.+..++.+..-..
T Consensus 36 yv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g------ 109 (387)
T KOG0329|consen 36 YVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDG------ 109 (387)
T ss_pred EEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCC------
Confidence 34567788999999999999999999999999999999999999999999999999999999999998875432
Q ss_pred CCCCCCeEEEEeccHHHHHHHHHHHHHHhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCC
Q 006272 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSS 261 (652)
Q Consensus 183 ~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~ 261 (652)
...+||+|.|||||-|+.+++.++.++. ++++.+++||.++......+++.++|+|+||||++.+.+.+.++|.+
T Consensus 110 ----~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~ 185 (387)
T KOG0329|consen 110 ----QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKN 185 (387)
T ss_pred ----eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhh
Confidence 3469999999999999999999999875 68999999999999999999999999999999999999999999999
Q ss_pred ceEEecCcchhhhhc-CcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEE
Q 006272 262 LKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340 (652)
Q Consensus 262 ~~~lViDEah~~l~~-gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 340 (652)
++.+|+||+|.|+++ ..+.++..|+...|. ..|++.||||++.++...+++|+ .+|..|.+.. +...+...++|+
T Consensus 186 vkhFvlDEcdkmle~lDMrRDvQEifr~tp~--~KQvmmfsatlskeiRpvC~kFm-QdPmEi~vDd-E~KLtLHGLqQ~ 261 (387)
T KOG0329|consen 186 VKHFVLDECDKMLEQLDMRRDVQEIFRMTPH--EKQVMMFSATLSKEIRPVCHKFM-QDPMEIFVDD-EAKLTLHGLQQY 261 (387)
T ss_pred cceeehhhHHHHHHHHHHHHHHHHHhhcCcc--cceeeeeeeecchhhHHHHHhhh-cCchhhhccc-hhhhhhhhHHHH
Confidence 999999999999875 588999999999987 77999999999999999999999 5666665543 344666788999
Q ss_pred EccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcCCCcccccccchHHHHHHHhhhcCCCceEEEEccccc
Q 006272 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (652)
Q Consensus 341 ~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~ 420 (652)
|+.....+|...+.+++..+ .-.+++||+.+... |. | ..+ ||||++++
T Consensus 262 YvkLke~eKNrkl~dLLd~L-eFNQVvIFvKsv~R---l~------------------------f---~kr-~vat~lfg 309 (387)
T KOG0329|consen 262 YVKLKENEKNRKLNDLLDVL-EFNQVVIFVKSVQR---LS------------------------F---QKR-LVATDLFG 309 (387)
T ss_pred HHhhhhhhhhhhhhhhhhhh-hhcceeEeeehhhh---hh------------------------h---hhh-hHHhhhhc
Confidence 99999999999999999988 45799999988654 00 3 223 89999999
Q ss_pred cCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHH
Q 006272 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFK 473 (652)
Q Consensus 421 ~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~ 473 (652)
||+||..|+.|||||+|.+..+|+||+|||||.|..+.. |.++++.....+.
T Consensus 310 rgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkgla-itfvs~e~da~iL 361 (387)
T KOG0329|consen 310 RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA-ITFVSDENDAKIL 361 (387)
T ss_pred cccCcccceeeeccCCCCCchHHHHHhhhhhccccccce-eehhcchhhHHHh
Confidence 999999999999999999999999999999999988765 5555555444333
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.1e-47 Score=421.34 Aligned_cols=325 Identities=22% Similarity=0.320 Sum_probs=254.3
Q ss_pred HHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHH
Q 006272 122 EKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (652)
Q Consensus 122 ~~l~~-~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 200 (652)
+.|++ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. . ..+|||+|+++|+
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--~--------------g~~lVisPl~sL~ 66 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--K--------------GLTVVISPLISLM 66 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--C--------------CcEEEEcCCHHHH
Confidence 34544 79999999999999999999999999999999999999998832 1 1389999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeCCcchHHHHHH----hcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhc
Q 006272 201 KQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK----LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276 (652)
Q Consensus 201 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~----~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~ 276 (652)
.|+++.++.+ ++.+..+.++.+....... .....+|+++||++|........+...++++|||||||++++|
T Consensus 67 ~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~ 142 (591)
T TIGR01389 67 KDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQW 142 (591)
T ss_pred HHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccc
Confidence 9999988874 5677888887776654432 2356899999999997655444455678999999999999998
Q ss_pred C--cHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHH
Q 006272 277 G--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354 (652)
Q Consensus 277 g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 354 (652)
| |++.+..+.......+..++++||||++..+...+...+......+.... ....++..... ....+...+.
T Consensus 143 g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~----~~r~nl~~~v~--~~~~~~~~l~ 216 (591)
T TIGR01389 143 GHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITS----FDRPNLRFSVV--KKNNKQKFLL 216 (591)
T ss_pred cCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC----CCCCCcEEEEE--eCCCHHHHHH
Confidence 7 78877776554433335569999999999988777776643332222211 11223332222 2233445555
Q ss_pred HHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccE
Q 006272 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL 430 (652)
Q Consensus 355 ~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~ 430 (652)
.++... .+.++||||+|++.|+.++..|. .+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|+|++
T Consensus 217 ~~l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~ 295 (591)
T TIGR01389 217 DYLKKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRF 295 (591)
T ss_pred HHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCE
Confidence 666554 36789999999999999999986 5678999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHH
Q 006272 431 IIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS 474 (652)
Q Consensus 431 VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~ 474 (652)
||||++|.|+++|+||+|||||.|..+.++ ++++..+...+..
T Consensus 296 VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i-l~~~~~d~~~~~~ 338 (591)
T TIGR01389 296 VIHYDMPGNLESYYQEAGRAGRDGLPAEAI-LLYSPADIALLKR 338 (591)
T ss_pred EEEcCCCCCHHHHhhhhccccCCCCCceEE-EecCHHHHHHHHH
Confidence 999999999999999999999999877665 4455554444433
No 43
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=7.7e-47 Score=413.35 Aligned_cols=313 Identities=22% Similarity=0.259 Sum_probs=243.0
Q ss_pred CCCCCChHHHHHHHHHHhcCC-cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEE-EeccHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGS-DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV-LLPTRELAKQVH 204 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~-dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~li-l~PtreLa~q~~ 204 (652)
.||+ |||||.++|+.++.|+ ++++++|||||||.+|.++++.. ... ...++.|| ++|||+||.|++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~----------~~~~~rLv~~vPtReLa~Qi~ 79 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG----------AKVPRRLVYVVNRRTVVDQVT 79 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc----------ccccceEEEeCchHHHHHHHH
Confidence 4887 9999999999999998 68888999999999776665522 111 22345666 669999999999
Q ss_pred HHHHHHhcCC-----------------------CceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcC---
Q 006272 205 EDFDVYGGAV-----------------------GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID--- 258 (652)
Q Consensus 205 ~~~~~~~~~~-----------------------~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~--- 258 (652)
+.++++++.. ++++.+++||.+...|...+..+++|||+|+ +++.++.++
T Consensus 80 ~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gY 155 (844)
T TIGR02621 80 EEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcccccc
Confidence 9999988754 4889999999999999999999999999995 555555442
Q ss_pred -------------CCCceEEecCcchhhhhcCcHHHHHHHHHhc--cC-CCCceEEEEcccCChHHHHHHHHhcccCCeE
Q 006272 259 -------------LSSLKFRVLDEADEMLRMGFVEDVELILGKV--ED-ANKVQTLLFSATLPSWVKHISTKFLKSDKKT 322 (652)
Q Consensus 259 -------------l~~~~~lViDEah~~l~~gf~~~~~~i~~~~--~~-~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~ 322 (652)
++++++||||||| ++++|..++..|+..+ +. ..++|+++||||++..+..+...++. .+..
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~-~p~~ 232 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA-EDYK 232 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc-CCce
Confidence 7889999999999 6899999999999975 22 12369999999999988887777764 3444
Q ss_pred EEEccCcccccCCCceEEEccCCchhhhhhHHHHH-Hh-hCCCCeEEEEecchhHHHHHHHhcC--CCcccccccchHHH
Q 006272 323 IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII-RC-YSSGGRTIIFTETKESASQLADLLP--GARALHGDIQQSQR 398 (652)
Q Consensus 323 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~-~~~~~~~iVF~~s~~~~~~l~~~l~--~~~~lh~~~~~~~R 398 (652)
+.+... ......+.++ +.+....+...+...+ .. ...++++||||||+..|+.++..|. .+..+||+|++.+|
T Consensus 233 i~V~~~--~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~~lLHG~m~q~dR 309 (844)
T TIGR02621 233 HPVLKK--RLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKFELLTGTLRGAER 309 (844)
T ss_pred eecccc--cccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCCeEeeCCCCHHHH
Confidence 444322 2333445554 3333333332222221 11 1345789999999999999999997 55789999999999
Q ss_pred H-----HHHhhhcC----CC-------ceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceee
Q 006272 399 E-----VTLAGFRS----GK-------FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETIT 462 (652)
Q Consensus 399 ~-----~~~~~f~~----g~-------~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~ 462 (652)
. .+++.|++ +. ..|||||+++++||||+. ++||++..| .++|+||+||+||.|..+...+.
T Consensus 310 ~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~ 386 (844)
T TIGR02621 310 DDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIA 386 (844)
T ss_pred hhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEE
Confidence 9 88999987 44 689999999999999986 899998877 79999999999999986555444
Q ss_pred cc
Q 006272 463 QV 464 (652)
Q Consensus 463 ~~ 464 (652)
++
T Consensus 387 vv 388 (844)
T TIGR02621 387 VV 388 (844)
T ss_pred EE
Confidence 43
No 44
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.5e-47 Score=430.89 Aligned_cols=324 Identities=23% Similarity=0.395 Sum_probs=252.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCC
Q 006272 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (652)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (652)
.|++++|++.+++.|.+.||..|+|+|.++|+. +++++|++++||||||||++|.+|+++.+..+ .
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~-------------~ 68 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG-------------G 68 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC-------------C
Confidence 478899999999999999999999999999998 77999999999999999999999999988542 2
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecC
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViD 268 (652)
++|||+||++||.|+++.|+.+.. .++++..++|+...... ....++|+|+||+++..++.+....++++++||+|
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViD 144 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVD 144 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEE
Confidence 599999999999999999998754 47899999998765432 23458999999999999888765668899999999
Q ss_pred cchhhhhcCcHHHHHHHHHhccC-CCCceEEEEcccCChHHHHHHHHhcccCC-----eEEE----EccCcccccCCCce
Q 006272 269 EADEMLRMGFVEDVELILGKVED-ANKVQTLLFSATLPSWVKHISTKFLKSDK-----KTID----LVGNEKMKASTNVR 338 (652)
Q Consensus 269 Eah~~l~~gf~~~~~~i~~~~~~-~~~~q~l~~SAT~~~~~~~~~~~~~~~~~-----~~i~----~~~~~~~~~~~~~~ 338 (652)
|+|.+.+.++...++.++..+.. ...+|+++||||+++. ..+. .++.... ..+. +....... ....
T Consensus 145 E~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la-~wl~~~~~~~~~rpv~l~~~v~~~~~~~--~~~~ 220 (737)
T PRK02362 145 EVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELA-DWLDAELVDSEWRPIDLREGVFYGGAIH--FDDS 220 (737)
T ss_pred CccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHH-HHhCCCcccCCCCCCCCeeeEecCCeec--cccc
Confidence 99999988899998888776642 2368999999999863 2222 3332110 0000 00000000 0001
Q ss_pred EEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----------------------------------
Q 006272 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---------------------------------- 384 (652)
Q Consensus 339 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~---------------------------------- 384 (652)
+..+.... +...+..++.....++++||||+|+..|+.++..|.
T Consensus 221 ~~~~~~~~--~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 298 (737)
T PRK02362 221 QREVEVPS--KDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDL 298 (737)
T ss_pred cccCCCcc--chHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHH
Confidence 11111111 122333334444467899999999999887765542
Q ss_pred ------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEE----cC-----CCCCHHHHHHHhhh
Q 006272 385 ------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE-----PPRDVEAYIHRSGR 449 (652)
Q Consensus 385 ------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~-----~p~s~~~y~qr~GR 449 (652)
.+..+|++|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||
T Consensus 299 ~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GR 378 (737)
T PRK02362 299 ADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGR 378 (737)
T ss_pred HHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhc
Confidence 4667899999999999999999999999999999999999999999997 76 68899999999999
Q ss_pred cccCCCc
Q 006272 450 TGRAGVE 456 (652)
Q Consensus 450 ~gR~g~~ 456 (652)
|||.|.+
T Consensus 379 AGR~g~d 385 (737)
T PRK02362 379 AGRPGLD 385 (737)
T ss_pred CCCCCCC
Confidence 9999976
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1e-44 Score=409.69 Aligned_cols=316 Identities=23% Similarity=0.346 Sum_probs=249.0
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCC
Q 006272 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (652)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (652)
.|.++++++.+.+.|++.||..|+|+|.++|+. +++++|+++++|||||||++|.+|+++.+... +.
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~------------~~ 69 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE------------GG 69 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc------------CC
Confidence 467889999999999999999999999999986 78999999999999999999999999987642 23
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecC
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViD 268 (652)
++|||+|+++|+.|+++.|..+. ..++++..++|+...... ....++|+|+||+++..++......++++++||+|
T Consensus 70 ~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViD 145 (720)
T PRK00254 70 KAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVAD 145 (720)
T ss_pred eEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEc
Confidence 69999999999999999998864 368899999998765432 23458999999999999887766668999999999
Q ss_pred cchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceE-----EEcc
Q 006272 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH-----IVLP 343 (652)
Q Consensus 269 Eah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~ 343 (652)
|+|.+.+.++...++.++..+.. .+|+++||||+++. ..+.. ++.... +. .... +..+.. .+..
T Consensus 146 E~H~l~~~~rg~~le~il~~l~~--~~qiI~lSATl~n~-~~la~-wl~~~~--~~--~~~r---pv~l~~~~~~~~~~~ 214 (720)
T PRK00254 146 EIHLIGSYDRGATLEMILTHMLG--RAQILGLSATVGNA-EELAE-WLNAEL--VV--SDWR---PVKLRKGVFYQGFLF 214 (720)
T ss_pred CcCccCCccchHHHHHHHHhcCc--CCcEEEEEccCCCH-HHHHH-HhCCcc--cc--CCCC---CCcceeeEecCCeee
Confidence 99999998999999999999875 78999999999863 34443 442211 10 0000 001110 0000
Q ss_pred CCch-------hhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC--------------------------------
Q 006272 344 CSSS-------ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-------------------------------- 384 (652)
Q Consensus 344 ~~~~-------~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~-------------------------------- 384 (652)
.... .....+..++ ..++++||||+|+..|+.++..|.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~i---~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (720)
T PRK00254 215 WEDGKIERFPNSWESLVYDAV---KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLK 291 (720)
T ss_pred ccCcchhcchHHHHHHHHHHH---HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHH
Confidence 1110 1112222333 356899999999999877654331
Q ss_pred -----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEE-------cCCCC-CHHHHHHHhhhcc
Q 006272 385 -----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ-------CEPPR-DVEAYIHRSGRTG 451 (652)
Q Consensus 385 -----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~-------~~~p~-s~~~y~qr~GR~g 451 (652)
.+.++|++|++.+|..+++.|++|.++|||||+++++|||+|++++||. |+.|. +..+|+||+||||
T Consensus 292 ~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAG 371 (720)
T PRK00254 292 KALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAG 371 (720)
T ss_pred HHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccC
Confidence 4778999999999999999999999999999999999999999999994 55554 6789999999999
Q ss_pred cCCC
Q 006272 452 RAGV 455 (652)
Q Consensus 452 R~g~ 455 (652)
|.|.
T Consensus 372 R~~~ 375 (720)
T PRK00254 372 RPKY 375 (720)
T ss_pred CCCc
Confidence 9874
No 46
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-44 Score=380.69 Aligned_cols=320 Identities=23% Similarity=0.310 Sum_probs=256.9
Q ss_pred HHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHH
Q 006272 122 EKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (652)
Q Consensus 122 ~~l~~-~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 200 (652)
..|+. +||..++|-|.++|..+++++|+++..|||+||++||++|++ +..+ -+|||+|..+|.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAl--l~~G--------------~TLVVSPLiSLM 70 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPAL--LLEG--------------LTLVVSPLISLM 70 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHH--hcCC--------------CEEEECchHHHH
Confidence 44544 599999999999999999999999999999999999999988 3333 389999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhc
Q 006272 201 KQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276 (652)
Q Consensus 201 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~ 276 (652)
..+.+.++.. |+.+..+.+..+.......+ ....++++-+|++|..-.....+..-.+.++|||||||+++|
T Consensus 71 ~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqW 146 (590)
T COG0514 71 KDQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQW 146 (590)
T ss_pred HHHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhc
Confidence 9999988874 47777777765555444333 335899999999997654444444667899999999999999
Q ss_pred C--cHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHH
Q 006272 277 G--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354 (652)
Q Consensus 277 g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 354 (652)
| |++++..+.......+++++++||||.++.+...+...+......+.....++ +|+...+.... .......
T Consensus 147 GhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR----pNi~~~v~~~~-~~~~q~~- 220 (590)
T COG0514 147 GHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR----PNLALKVVEKG-EPSDQLA- 220 (590)
T ss_pred CCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC----chhhhhhhhcc-cHHHHHH-
Confidence 8 99999998887777668899999999999999888888765554444433332 33333222222 1122222
Q ss_pred HHHH-hhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCcc
Q 006272 355 DIIR-CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429 (652)
Q Consensus 355 ~ll~-~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~ 429 (652)
.+.. .....+..||||.|++.++.++..|. .+..||++|+..+|..+.+.|.+++.+|+|||.++++|||.|||+
T Consensus 221 fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVR 300 (590)
T COG0514 221 FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVR 300 (590)
T ss_pred HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCce
Confidence 2221 23356779999999999999999997 678999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCc
Q 006272 430 LIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDS 467 (652)
Q Consensus 430 ~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~ 467 (652)
+|||||+|.|+++|+|.+|||||+|..+.+++++...+
T Consensus 301 fViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D 338 (590)
T COG0514 301 FVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPED 338 (590)
T ss_pred EEEEecCCCCHHHHHHHHhhccCCCCcceEEEeecccc
Confidence 99999999999999999999999999987766655444
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=8.9e-44 Score=401.23 Aligned_cols=319 Identities=23% Similarity=0.267 Sum_probs=246.0
Q ss_pred cCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcC------CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 114 FRISVPLREKLKS-KGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 114 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~------~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
+..+..+++.+.+ ++| .|||+|.+||+.++.+ +|++++|+||||||++|++|++..+..+
T Consensus 434 ~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g------------ 500 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG------------ 500 (926)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC------------
Confidence 3455566665544 688 5999999999999875 7999999999999999999999888653
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHH---HhcC-CCcEEEeCcHHHHHHHHhCCcCCCCc
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KLKK-GIDVVIGTPGRIKDHIERGNIDLSSL 262 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~~~~-~~~Ilv~Tp~rl~~~l~~~~~~l~~~ 262 (652)
.+++|++||++||.|+++.|+.++...++++..++|+.+...+.. .+.. .++|||+||..+ ...+.+.++
T Consensus 501 -~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L 574 (926)
T TIGR00580 501 -KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDL 574 (926)
T ss_pred -CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccC
Confidence 369999999999999999999988888899999988877554433 3333 589999999422 345678999
Q ss_pred eEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEc
Q 006272 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (652)
Q Consensus 263 ~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (652)
++|||||+|++. ......+..++. ++|+++||||+++....+....+ .+...+..... ....+.+++.
T Consensus 575 ~llVIDEahrfg-----v~~~~~L~~~~~--~~~vL~~SATpiprtl~~~l~g~-~d~s~I~~~p~----~R~~V~t~v~ 642 (926)
T TIGR00580 575 GLLIIDEEQRFG-----VKQKEKLKELRT--SVDVLTLSATPIPRTLHMSMSGI-RDLSIIATPPE----DRLPVRTFVM 642 (926)
T ss_pred CEEEeecccccc-----hhHHHHHHhcCC--CCCEEEEecCCCHHHHHHHHhcC-CCcEEEecCCC----CccceEEEEE
Confidence 999999999852 233445555554 68999999998776655544333 33444433221 1223444444
Q ss_pred cCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC------CCcccccccchHHHHHHHhhhcCCCceEEEEc
Q 006272 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (652)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT 416 (652)
..... .+...++.....+++++||||+++.++.++..|. .+..+||+|++.+|..+++.|++|+++|||||
T Consensus 643 ~~~~~---~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT 719 (926)
T TIGR00580 643 EYDPE---LVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCT 719 (926)
T ss_pred ecCHH---HHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 33221 1122233344467899999999999999988876 47789999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEcCCCC-CHHHHHHHhhhcccCCCcccceeeccCC
Q 006272 417 NVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGVEAAETITQVSD 466 (652)
Q Consensus 417 ~~~~~Gldi~~v~~VI~~~~p~-s~~~y~qr~GR~gR~g~~~~~~i~~~~~ 466 (652)
+++++|||+|++++||+++.|. +..+|+||+||+||.|..+.++++....
T Consensus 720 ~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 720 TIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999999999999999976 6789999999999999998887765443
No 48
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.5e-43 Score=398.73 Aligned_cols=337 Identities=21% Similarity=0.283 Sum_probs=251.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 006272 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (652)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (652)
.|++++|++.+++.+.+.+|. |+|+|.++++.+++++|++++||||||||++|.+++++.+..+ .+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~-------------~k 67 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG-------------LK 67 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC-------------Cc
Confidence 477899999999999999997 9999999999999999999999999999999999999887643 25
Q ss_pred EEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCc
Q 006272 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (652)
Q Consensus 190 ~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDE 269 (652)
+||++|+++||.|+++++.++. ..++.+...+|+...... ....++|+|+||+++..++.+....++++++||+||
T Consensus 68 ~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDE 143 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADE 143 (674)
T ss_pred EEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEec
Confidence 8999999999999999998864 367888888887654322 224589999999999988887666689999999999
Q ss_pred chhhhhcCcHHHHHHHHHhccC-CCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCc-----eEEEcc
Q 006272 270 ADEMLRMGFVEDVELILGKVED-ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV-----RHIVLP 343 (652)
Q Consensus 270 ah~~l~~gf~~~~~~i~~~~~~-~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~ 343 (652)
||++.+.++...++.++..+.. ..+.|+++||||+++. ..+.. ++.... +.. ... ..+..+ .+.+..
T Consensus 144 aH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~--~~~--~~r-~vpl~~~i~~~~~~~~~ 216 (674)
T PRK01172 144 IHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASL--IKS--NFR-PVPLKLGILYRKRLILD 216 (674)
T ss_pred chhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCc--cCC--CCC-CCCeEEEEEecCeeeec
Confidence 9999988888888887765532 1368999999999863 33433 442111 110 000 000000 011111
Q ss_pred CCchhhhhhHHHHHHh-hCCCCeEEEEecchhHHHHHHHhcC-----------------------------CCccccccc
Q 006272 344 CSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP-----------------------------GARALHGDI 393 (652)
Q Consensus 344 ~~~~~~~~~l~~ll~~-~~~~~~~iVF~~s~~~~~~l~~~l~-----------------------------~~~~lh~~~ 393 (652)
........ +..++.. ...++++||||++++.|+.++..|. ++..+|++|
T Consensus 217 ~~~~~~~~-~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl 295 (674)
T PRK01172 217 GYERSQVD-INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGL 295 (674)
T ss_pred cccccccc-HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCC
Confidence 11111111 2233332 3467899999999999998887663 356789999
Q ss_pred chHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCC---------CCCHHHHHHHhhhcccCCCcc--cceee
Q 006272 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP---------PRDVEAYIHRSGRTGRAGVEA--AETIT 462 (652)
Q Consensus 394 ~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~---------p~s~~~y~qr~GR~gR~g~~~--~~~i~ 462 (652)
++.+|..+++.|++|.++|||||+++++|||+|+..+|| ++. |.+..+|.||+|||||.|.+. .+.++
T Consensus 296 ~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~ 374 (674)
T PRK01172 296 SNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIY 374 (674)
T ss_pred CHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEE
Confidence 999999999999999999999999999999999865544 443 568999999999999999543 34444
Q ss_pred ccCCcchHHHH
Q 006272 463 QVSDSVIPAFK 473 (652)
Q Consensus 463 ~~~~~~~~~~~ 473 (652)
..+......+.
T Consensus 375 ~~~~~~~~~~~ 385 (674)
T PRK01172 375 AASPASYDAAK 385 (674)
T ss_pred ecCcccHHHHH
Confidence 44433333333
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.6e-43 Score=383.46 Aligned_cols=339 Identities=23% Similarity=0.307 Sum_probs=267.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEec
Q 006272 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (652)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 195 (652)
|++.+++.++.. |..|||.|.+|||.+.+|+|+|++||||||||+|++||++..+..... .....+..+|+|+|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~-----~~~~~~i~~lYIsP 81 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGK-----GKLEDGIYALYISP 81 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccC-----CCCCCceEEEEeCc
Confidence 789999999998 999999999999999999999999999999999999999999987631 01234678999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCC--cCCCCceEEecCcchhh
Q 006272 196 TRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLDEADEM 273 (652)
Q Consensus 196 treLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~--~~l~~~~~lViDEah~~ 273 (652)
.|+|.+.+...++..+...++.+..-+|+++.....+.+.+++||+|+||+.|.-++.... -.|.++++||+||.|.+
T Consensus 82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel 161 (814)
T COG1201 82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHAL 161 (814)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhh
Confidence 9999999999999999999999999999999998888889999999999999988875533 24899999999999999
Q ss_pred hhcCcHHHHHHHHHhccCCC-CceEEEEcccCChHHHHHHHHhcccCC---eEEEEccCcccccCCCceEEEccC-----
Q 006272 274 LRMGFVEDVELILGKVEDAN-KVQTLLFSATLPSWVKHISTKFLKSDK---KTIDLVGNEKMKASTNVRHIVLPC----- 344 (652)
Q Consensus 274 l~~gf~~~~~~i~~~~~~~~-~~q~l~~SAT~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~----- 344 (652)
.+.-...++..-+..+.... +.|.|.+|||..+. .. ..+|+.... ..+.+... ....+.-.....
T Consensus 162 ~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~-varfL~g~~~~~~Iv~~~~~----k~~~i~v~~p~~~~~~~ 235 (814)
T COG1201 162 AESKRGVQLALSLERLRELAGDFQRIGLSATVGPP-EE-VAKFLVGFGDPCEIVDVSAA----KKLEIKVISPVEDLIYD 235 (814)
T ss_pred hccccchhhhhhHHHHHhhCcccEEEeehhccCCH-HH-HHHHhcCCCCceEEEEcccC----CcceEEEEecCCccccc
Confidence 86655555554444443322 68999999999753 23 444553332 22222211 111121111111
Q ss_pred --CchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC-----CCcccccccchHHHHHHHhhhcCCCceEEEEcc
Q 006272 345 --SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (652)
Q Consensus 345 --~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~-----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~ 417 (652)
........+..++. ....+|||+||+..++.++..|+ .+..+||.++..+|..+.+.|++|+.+++|||.
T Consensus 236 ~~~~~~~~~~i~~~v~---~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TS 312 (814)
T COG1201 236 EELWAALYERIAELVK---KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATS 312 (814)
T ss_pred cchhHHHHHHHHHHHh---hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEcc
Confidence 11223344444444 44699999999999999998887 577899999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCc-ccceeeccCCcch
Q 006272 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE-AAETITQVSDSVI 469 (652)
Q Consensus 418 ~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~-~~~~i~~~~~~~~ 469 (652)
.++-|||+.+|+.||||..|.++..++||+||+|+.-.. ....++..+..++
T Consensus 313 SLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dl 365 (814)
T COG1201 313 SLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDL 365 (814)
T ss_pred chhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHH
Confidence 999999999999999999999999999999999987654 4444444443333
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=7.8e-43 Score=401.86 Aligned_cols=315 Identities=22% Similarity=0.215 Sum_probs=244.9
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcC------CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEE
Q 006272 118 VPLREKLKSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191 (652)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~------~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~l 191 (652)
....+...++.| .||++|.+||+.++.+ +|++++|+||||||.+|+.+++..+.. +.+++
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-------------g~qvl 653 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-------------HKQVA 653 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-------------CCeEE
Confidence 344555677888 7999999999999987 899999999999999999988876643 34699
Q ss_pred EEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhc----CCCcEEEeCcHHHHHHHHhCCcCCCCceEEec
Q 006272 192 VLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK----KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (652)
Q Consensus 192 il~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~----~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lVi 267 (652)
||+||++||.|+++.|..++...++++..++++.+...+...+. ..++|+|+||+.+ ...+.+.++.+|||
T Consensus 654 vLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVI 728 (1147)
T PRK10689 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIV 728 (1147)
T ss_pred EEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEE
Confidence 99999999999999999877777888888999888777665442 4689999999643 23456789999999
Q ss_pred CcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCch
Q 006272 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (652)
Q Consensus 268 DEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (652)
||+|++ |+. ....+..++. ++|+++||||+++....++...+ .++..|...... ...+.+++......
T Consensus 729 DEahrf---G~~--~~e~lk~l~~--~~qvLl~SATpiprtl~l~~~gl-~d~~~I~~~p~~----r~~v~~~~~~~~~~ 796 (1147)
T PRK10689 729 DEEHRF---GVR--HKERIKAMRA--DVDILTLTATPIPRTLNMAMSGM-RDLSIIATPPAR----RLAVKTFVREYDSL 796 (1147)
T ss_pred echhhc---chh--HHHHHHhcCC--CCcEEEEcCCCCHHHHHHHHhhC-CCcEEEecCCCC----CCCceEEEEecCcH
Confidence 999997 332 2344555654 78999999998887777766666 455555432221 22344444333221
Q ss_pred hhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC------CCcccccccchHHHHHHHhhhcCCCceEEEEcccccc
Q 006272 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (652)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 421 (652)
.....++..+..+++++||||+++.++.+++.|. .+.++||+|++.+|.+++..|++|+++|||||+++++
T Consensus 797 ---~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIier 873 (1147)
T PRK10689 797 ---VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 873 (1147)
T ss_pred ---HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhc
Confidence 1223334444467899999999999888888775 5778999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCC-CCHHHHHHHhhhcccCCCcccceeeccCC
Q 006272 422 GLDINDVQLIIQCEPP-RDVEAYIHRSGRTGRAGVEAAETITQVSD 466 (652)
Q Consensus 422 Gldi~~v~~VI~~~~p-~s~~~y~qr~GR~gR~g~~~~~~i~~~~~ 466 (652)
|||+|+|++||..+.. .+..+|+||+|||||.|..+.++++..++
T Consensus 874 GIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 874 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred ccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 9999999999954332 24567999999999999998888766554
No 51
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.7e-42 Score=400.26 Aligned_cols=296 Identities=24% Similarity=0.330 Sum_probs=220.7
Q ss_pred EEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHh------------cCCCceE
Q 006272 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG------------GAVGLTS 218 (652)
Q Consensus 151 ~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~------------~~~~~~~ 218 (652)
|+||||||||+||.||+++.+...............++++|||+|+++|+.|+++.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999987543111000111245789999999999999999887421 1247899
Q ss_pred EEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhC-CcCCCCceEEecCcchhhhhcCc----HHHHHHHHHhccCCC
Q 006272 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFRVLDEADEMLRMGF----VEDVELILGKVEDAN 293 (652)
Q Consensus 219 ~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-~~~l~~~~~lViDEah~~l~~gf----~~~~~~i~~~~~~~~ 293 (652)
...+|+++...+...+.+.++|||+||++|..++.+. ...++++++|||||+|.|++..+ ...++.|...++.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~-- 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT-- 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC--
Confidence 9999999999887777888999999999999887653 34689999999999999987543 3445555555544
Q ss_pred CceEEEEcccCChHHHHHHHHhcccC-CeEEEEccCcccccCCCceEEEccCCchhh---------------------hh
Q 006272 294 KVQTLLFSATLPSWVKHISTKFLKSD-KKTIDLVGNEKMKASTNVRHIVLPCSSSAR---------------------SQ 351 (652)
Q Consensus 294 ~~q~l~~SAT~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~ 351 (652)
+.|+|+||||+++. ..++ .++... +..| +... ......+.. ++++..... ..
T Consensus 159 ~~QrIgLSATI~n~-eevA-~~L~g~~pv~I--v~~~-~~r~~~l~v-~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~ 232 (1490)
T PRK09751 159 SAQRIGLSATVRSA-SDVA-AFLGGDRPVTV--VNPP-AMRHPQIRI-VVPVANMDDVSSVASGTGEDSHAGREGSIWPY 232 (1490)
T ss_pred CCeEEEEEeeCCCH-HHHH-HHhcCCCCEEE--ECCC-CCcccceEE-EEecCchhhccccccccccccchhhhhhhhHH
Confidence 68999999999873 4444 455322 3222 2111 111122221 222111100 01
Q ss_pred hHHHHHHhhCCCCeEEEEecchhHHHHHHHhcCC-------------------------------------Ccccccccc
Q 006272 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPG-------------------------------------ARALHGDIQ 394 (652)
Q Consensus 352 ~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~~-------------------------------------~~~lh~~~~ 394 (652)
+...++.....+.++||||||+..|+.++..|+. +..|||+|+
T Consensus 233 v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLS 312 (1490)
T PRK09751 233 IETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVS 312 (1490)
T ss_pred HHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCC
Confidence 1223444444568999999999999999977752 357999999
Q ss_pred hHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCC
Q 006272 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (652)
Q Consensus 395 ~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g 454 (652)
+.+|..+++.|++|.++|||||+++++||||++|++||||+.|.++.+|+||+|||||..
T Consensus 313 keeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~ 372 (1490)
T PRK09751 313 KEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQV 372 (1490)
T ss_pred HHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999973
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=4e-41 Score=373.52 Aligned_cols=319 Identities=21% Similarity=0.280 Sum_probs=236.6
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcC------CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEE
Q 006272 118 VPLREKLKSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191 (652)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~------~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~l 191 (652)
..+.+.+..++| .||++|+++|+.++.+ .+.+++|+||||||++|++|++..+..+ .+++
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-------------~qvl 288 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-------------YQVA 288 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-------------CcEE
Confidence 345567788899 7999999999999865 2589999999999999999999887643 3699
Q ss_pred EEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHH---HHhc-CCCcEEEeCcHHHHHHHHhCCcCCCCceEEec
Q 006272 192 VLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE---FKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (652)
Q Consensus 192 il~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lVi 267 (652)
|++||++||.|+++.+++++...++++..++|+....... ..+. ..++|+|+||+.+.+ .+.+.++.+|||
T Consensus 289 ilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVI 363 (630)
T TIGR00643 289 LMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVII 363 (630)
T ss_pred EECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEE
Confidence 9999999999999999999988899999999998866533 2333 458999999998754 355789999999
Q ss_pred CcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCch
Q 006272 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (652)
Q Consensus 268 DEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (652)
||+|++.. .+...++........+++++||||+.+....+.. +...+...+... +.....+...++.. .
T Consensus 364 DEaH~fg~----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~-~~~l~~~~i~~~----p~~r~~i~~~~~~~--~ 432 (630)
T TIGR00643 364 DEQHRFGV----EQRKKLREKGQGGFTPHVLVMSATPIPRTLALTV-YGDLDTSIIDEL----PPGRKPITTVLIKH--D 432 (630)
T ss_pred echhhccH----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh-cCCcceeeeccC----CCCCCceEEEEeCc--c
Confidence 99998632 2223333333311257899999997654333221 111111111111 11112333333332 2
Q ss_pred hhhhhHHHHHHhhCCCCeEEEEecchh--------HHHHHHHhcC------CCcccccccchHHHHHHHhhhcCCCceEE
Q 006272 348 ARSQVIPDIIRCYSSGGRTIIFTETKE--------SASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTL 413 (652)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~iVF~~s~~--------~~~~l~~~l~------~~~~lh~~~~~~~R~~~~~~f~~g~~~vL 413 (652)
.+..++..+......+.+++|||++.+ .++.+++.|. .+..+||+|++.+|..+++.|++|+.+||
T Consensus 433 ~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~IL 512 (630)
T TIGR00643 433 EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDIL 512 (630)
T ss_pred hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEE
Confidence 233344444444456789999998763 3445555443 57899999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEEcCCCC-CHHHHHHHhhhcccCCCcccceeeccCC
Q 006272 414 VATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGVEAAETITQVSD 466 (652)
Q Consensus 414 vaT~~~~~Gldi~~v~~VI~~~~p~-s~~~y~qr~GR~gR~g~~~~~~i~~~~~ 466 (652)
|||+++++|||+|++++||+|+.|. +...|.||+||+||.|..+.++++..++
T Consensus 513 VaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~ 566 (630)
T TIGR00643 513 VATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNP 566 (630)
T ss_pred EECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCC
Confidence 9999999999999999999999997 6788899999999999998887776444
No 53
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=9.4e-41 Score=372.80 Aligned_cols=313 Identities=22% Similarity=0.323 Sum_probs=233.1
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhcC------CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEe
Q 006272 121 REKLKSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (652)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~~l~~------~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~ 194 (652)
...+..++| .||++|.++|+.+..+ .++|++|+||||||++|++|++..+..+ .+++|++
T Consensus 252 ~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g-------------~q~lila 317 (681)
T PRK10917 252 KKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG-------------YQAALMA 317 (681)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC-------------CeEEEEe
Confidence 344556677 6999999999999876 4899999999999999999999888643 3699999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHH---HHhcC-CCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcc
Q 006272 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE---FKLKK-GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270 (652)
Q Consensus 195 PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEa 270 (652)
||++||.|+++.++.++...++++..++|+.+..... ..+.. .++|+|+||+++.+ .+.+.++++|||||+
T Consensus 318 PT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~ 392 (681)
T PRK10917 318 PTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQ 392 (681)
T ss_pred ccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEech
Confidence 9999999999999999988899999999999865433 33333 59999999988754 345789999999999
Q ss_pred hhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhh
Q 006272 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350 (652)
Q Consensus 271 h~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (652)
|++.. ... ..+..... .+++++||||+.+....+.. +...+...++.. +.....+...++.... +.
T Consensus 393 Hrfg~----~qr-~~l~~~~~--~~~iL~~SATp~prtl~~~~-~g~~~~s~i~~~----p~~r~~i~~~~~~~~~--~~ 458 (681)
T PRK10917 393 HRFGV----EQR-LALREKGE--NPHVLVMTATPIPRTLAMTA-YGDLDVSVIDEL----PPGRKPITTVVIPDSR--RD 458 (681)
T ss_pred hhhhH----HHH-HHHHhcCC--CCCEEEEeCCCCHHHHHHHH-cCCCceEEEecC----CCCCCCcEEEEeCccc--HH
Confidence 98632 122 22222222 57899999998665443322 211122222211 1112234444443322 22
Q ss_pred hhHHHHHHhhCCCCeEEEEecchhH--------HHHHHHhc----C--CCcccccccchHHHHHHHhhhcCCCceEEEEc
Q 006272 351 QVIPDIIRCYSSGGRTIIFTETKES--------ASQLADLL----P--GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (652)
Q Consensus 351 ~~l~~ll~~~~~~~~~iVF~~s~~~--------~~~l~~~l----~--~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT 416 (652)
.++..+......+.+++|||+++++ +..+++.| . .+..+||+|++.+|..+++.|++|+++|||||
T Consensus 459 ~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT 538 (681)
T PRK10917 459 EVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVAT 538 (681)
T ss_pred HHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 3334444444567899999996542 33344443 3 58889999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEcCCCC-CHHHHHHHhhhcccCCCcccceeeccCC
Q 006272 417 NVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGVEAAETITQVSD 466 (652)
Q Consensus 417 ~~~~~Gldi~~v~~VI~~~~p~-s~~~y~qr~GR~gR~g~~~~~~i~~~~~ 466 (652)
+++++|||+|++++||+|+.|. ....|.||+||+||.|..+.++++..++
T Consensus 539 ~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~ 589 (681)
T PRK10917 539 TVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP 589 (681)
T ss_pred cceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC
Confidence 9999999999999999999997 5788889999999999998887776433
No 54
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-42 Score=338.12 Aligned_cols=274 Identities=31% Similarity=0.496 Sum_probs=221.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcC---CCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCc
Q 006272 186 RAPSVLVLLPTRELAKQVHEDFDVYGGA---VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (652)
Q Consensus 186 ~~~~~lil~PtreLa~q~~~~~~~~~~~---~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~ 262 (652)
+.|.+||+-|+|||+.|+++.++.+-.+ ..++...+.||...+.|...+.++.+|+|+||+||.+.+..+.+.+..+
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 5688999999999999999966665443 4567778999999999999999999999999999999999999999999
Q ss_pred eEEecCcchhhhhcCcHHHHHHHHHhccCC----CCceEEEEcccCCh-HHHHHHHHhcccCCeEEEEccCcccccCCCc
Q 006272 263 KFRVLDEADEMLRMGFVEDVELILGKVEDA----NKVQTLLFSATLPS-WVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337 (652)
Q Consensus 263 ~~lViDEah~~l~~gf~~~~~~i~~~~~~~----~~~q~l~~SAT~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 337 (652)
+++|+||||.+|..++.+.+..+...+|.. ..+|.+++|||+.. ++..+..+.| ..|.++++.+.+ ..+..+
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervm-hfptwVdLkgeD--~vpetv 441 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVM-HFPTWVDLKGED--LVPETV 441 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhc-cCceeEeccccc--ccchhh
Confidence 999999999999999999888888877642 46899999999854 4556666666 567777776544 333333
Q ss_pred eEEEccC-Cc---------------------------------hhhhhhH-----HHHHHhhCCCCeEEEEecchhHHHH
Q 006272 338 RHIVLPC-SS---------------------------------SARSQVI-----PDIIRCYSSGGRTIIFTETKESASQ 378 (652)
Q Consensus 338 ~~~~~~~-~~---------------------------------~~~~~~l-----~~ll~~~~~~~~~iVF~~s~~~~~~ 378 (652)
.|.+..+ +. +....++ ...++.. .-.++||||.|+..|+.
T Consensus 442 Hhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDn 520 (725)
T KOG0349|consen 442 HHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDN 520 (725)
T ss_pred ccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchH
Confidence 3333221 11 0111111 0111111 33689999999999999
Q ss_pred HHHhcC-------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcc
Q 006272 379 LADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451 (652)
Q Consensus 379 l~~~l~-------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~g 451 (652)
|..+|. .+.++||+..+.+|.+.++.|+...++.|||||+++|||||.++-++||..+|.+...|+||+||+|
T Consensus 521 Ler~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvg 600 (725)
T KOG0349|consen 521 LERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVG 600 (725)
T ss_pred HHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccc
Confidence 999997 6889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccceeec
Q 006272 452 RAGVEAAETITQ 463 (652)
Q Consensus 452 R~g~~~~~~i~~ 463 (652)
|+-+.+..+-+.
T Consensus 601 raermglaislv 612 (725)
T KOG0349|consen 601 RAERMGLAISLV 612 (725)
T ss_pred hhhhcceeEEEe
Confidence 998877654433
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.2e-40 Score=363.65 Aligned_cols=308 Identities=16% Similarity=0.197 Sum_probs=224.2
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCCchhh---------hHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHH
Q 006272 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLA---------FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (652)
Q Consensus 134 ~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~---------~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~ 204 (652)
.+|+++++.+++++|+|++|+||||||++ |++|.+..+..-.. .....+++|++|||+||.|+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~-------~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP-------NFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc-------ccCCcEEEEECcHHHHHHHHH
Confidence 48999999999999999999999999997 44555554431100 012347999999999999999
Q ss_pred HHHHHHhcC---CCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHH
Q 006272 205 EDFDVYGGA---VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281 (652)
Q Consensus 205 ~~~~~~~~~---~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~ 281 (652)
..+.....+ .+..+...+|+... .+........+|+|+|++.. ...++++++|||||||+++..+ +.
T Consensus 240 ~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--Dl 309 (675)
T PHA02653 240 ITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DI 309 (675)
T ss_pred HHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hH
Confidence 998765543 45678888999873 22223334679999997631 1247899999999999998765 44
Q ss_pred HHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCC----------chhhhh
Q 006272 282 VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS----------SSARSQ 351 (652)
Q Consensus 282 ~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 351 (652)
+..++..+... ..|+++||||++..+..+ ..++ .++..+.+.+ .+...+++.++... ...+..
T Consensus 310 lL~llk~~~~~-~rq~ILmSATl~~dv~~l-~~~~-~~p~~I~I~g----rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~ 382 (675)
T PHA02653 310 IIAVARKHIDK-IRSLFLMTATLEDDRDRI-KEFF-PNPAFVHIPG----GTLFPISEVYVKNKYNPKNKRAYIEEEKKN 382 (675)
T ss_pred HHHHHHHhhhh-cCEEEEEccCCcHhHHHH-HHHh-cCCcEEEeCC----CcCCCeEEEEeecCcccccchhhhHHHHHH
Confidence 45555444321 359999999999888776 5677 4666666532 22345666665332 112222
Q ss_pred hHHHHHHhh-CCCCeEEEEecchhHHHHHHHhcC------CCcccccccchHHHHHHHhhh-cCCCceEEEEccccccCC
Q 006272 352 VIPDIIRCY-SSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGF-RSGKFMTLVATNVAARGL 423 (652)
Q Consensus 352 ~l~~ll~~~-~~~~~~iVF~~s~~~~~~l~~~l~------~~~~lh~~~~~~~R~~~~~~f-~~g~~~vLvaT~~~~~Gl 423 (652)
.+..+.... ..++++||||+++.+|+.+++.|. .+..+||+|++. +++++.| ++|+.+||||||+++|||
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGI 460 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSV 460 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccc
Confidence 333333222 235789999999999999999885 467899999975 5667777 789999999999999999
Q ss_pred CCCCccEEEEcC---CCC---------CHHHHHHHhhhcccCCCcccceeeccCCcch
Q 006272 424 DINDVQLIIQCE---PPR---------DVEAYIHRSGRTGRAGVEAAETITQVSDSVI 469 (652)
Q Consensus 424 di~~v~~VI~~~---~p~---------s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~ 469 (652)
|||+|++||+++ .|. |.++|+||+|||||. ..|.++- +++....
T Consensus 461 DIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~r-Lyt~~~~ 516 (675)
T PHA02653 461 TIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVY-FYDLDLL 516 (675)
T ss_pred cccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEE-EECHHHh
Confidence 999999999999 665 889999999999999 5655544 4444443
No 56
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.3e-40 Score=382.22 Aligned_cols=300 Identities=21% Similarity=0.282 Sum_probs=236.0
Q ss_pred HHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHH
Q 006272 122 EKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (652)
Q Consensus 122 ~~l~~-~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 200 (652)
+.+++ .|+ .||++|.+++|.++.|+|++++||||||||+ |++|++..+.. .++++|||+|||+||
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~------------~g~~alIL~PTreLa 136 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK------------KGKKSYIIFPTRLLV 136 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh------------cCCeEEEEeccHHHH
Confidence 34544 477 8999999999999999999999999999996 66666655432 135799999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeCCcch-----HHHHHHhc-CCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhh
Q 006272 201 KQVHEDFDVYGGAVGLTSCCLYGGAPY-----HAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (652)
Q Consensus 201 ~q~~~~~~~~~~~~~~~~~~~~gg~~~-----~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l 274 (652)
.|+++.++.++...++.+..++|+... ..+...+. ..++|+|+||++|.+++. .+....+++|||||||+|+
T Consensus 137 ~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 137 EQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhh
Confidence 999999999998888888888877643 22233344 458999999999999886 4566779999999999999
Q ss_pred h-----------cCcH-HHHHHHHHhccCC----------------------CCceEEEEcccCChH-HHH-HHHHhccc
Q 006272 275 R-----------MGFV-EDVELILGKVEDA----------------------NKVQTLLFSATLPSW-VKH-ISTKFLKS 318 (652)
Q Consensus 275 ~-----------~gf~-~~~~~i~~~~~~~----------------------~~~q~l~~SAT~~~~-~~~-~~~~~~~~ 318 (652)
+ +||. +++..++..++.. ...|+++||||+++. +.. +....
T Consensus 215 ~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~l--- 291 (1176)
T PRK09401 215 KSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFREL--- 291 (1176)
T ss_pred hcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhcc---
Confidence 6 6784 6788888777531 157999999999864 332 12222
Q ss_pred CCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhH---HHHHHHhcC----CCccccc
Q 006272 319 DKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKES---ASQLADLLP----GARALHG 391 (652)
Q Consensus 319 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~---~~~l~~~l~----~~~~lh~ 391 (652)
..+.+... .....++.+.++.+. ++...+..++.... .++||||+++.. |+.|+..|. .+..+||
T Consensus 292 --l~~~v~~~--~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~--~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg 363 (1176)
T PRK09401 292 --LGFEVGSP--VFYLRNIVDSYIVDE--DSVEKLVELVKRLG--DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAIS 363 (1176)
T ss_pred --ceEEecCc--ccccCCceEEEEEcc--cHHHHHHHHHHhcC--CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeC
Confidence 22333322 234567888887665 45666777776653 589999999877 999999997 6778999
Q ss_pred ccchHHHHHHHhhhcCCCceEEEE----ccccccCCCCCC-ccEEEEcCCCC------CHHHHHHHhhhcccC
Q 006272 392 DIQQSQREVTLAGFRSGKFMTLVA----TNVAARGLDIND-VQLIIQCEPPR------DVEAYIHRSGRTGRA 453 (652)
Q Consensus 392 ~~~~~~R~~~~~~f~~g~~~vLva----T~~~~~Gldi~~-v~~VI~~~~p~------s~~~y~qr~GR~gR~ 453 (652)
+| .+.++.|++|+++|||| ||+++||||+|+ |++|||||+|. ..+.|.||+||+...
T Consensus 364 ~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 364 GF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred cH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 99 23469999999999999 699999999999 89999999998 678999999999744
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.8e-39 Score=362.78 Aligned_cols=298 Identities=20% Similarity=0.272 Sum_probs=226.1
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH-HHhcC
Q 006272 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGA 213 (652)
Q Consensus 135 ~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~-~~~~~ 213 (652)
+-.+.+..+.+++++|++|+||||||++|.+|+++.... ..+++|+.|||++|.|+++.+. .++..
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-------------~~~ilvlqPrR~aA~qiA~rva~~~~~~ 72 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-------------GGKIIMLEPRRLAARSAAQRLASQLGEA 72 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-------------CCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 345666777789999999999999999999999987521 2369999999999999999885 45545
Q ss_pred CCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcch-hhhhcCcHHH-HHHHHHhccC
Q 006272 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD-EMLRMGFVED-VELILGKVED 291 (652)
Q Consensus 214 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah-~~l~~gf~~~-~~~i~~~~~~ 291 (652)
.+..+...+.+.. .....++|+|+|||+|++++..+ ..++++++||||||| ++++.+|.-. +..+...++.
T Consensus 73 ~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~ 145 (819)
T TIGR01970 73 VGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLRE 145 (819)
T ss_pred cCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCC
Confidence 5666655554432 23455899999999999998864 569999999999999 4777665433 3455555655
Q ss_pred CCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhh-----hhHHHHHHhhCCCCeE
Q 006272 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-----QVIPDIIRCYSSGGRT 366 (652)
Q Consensus 292 ~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~ll~~~~~~~~~ 366 (652)
+.|+|+||||++... ...|+ .+...|...+. ...+.++|+.+....+. ..+..++.. ..+.+
T Consensus 146 --dlqlIlmSATl~~~~---l~~~l-~~~~vI~~~gr-----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~i 212 (819)
T TIGR01970 146 --DLKILAMSATLDGER---LSSLL-PDAPVVESEGR-----SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSI 212 (819)
T ss_pred --CceEEEEeCCCCHHH---HHHHc-CCCcEEEecCc-----ceeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcE
Confidence 789999999998754 35666 34445554332 22456666655444332 223333322 35899
Q ss_pred EEEecchhHHHHHHHhcC-------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCC-
Q 006272 367 IIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR- 438 (652)
Q Consensus 367 iVF~~s~~~~~~l~~~l~-------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~- 438 (652)
||||+++.+++.++..|. .+..+||+|++.+|..+++.|++|..+||||||++++|||||+|++|||+++|+
T Consensus 213 LVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~ 292 (819)
T TIGR01970 213 LVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARV 292 (819)
T ss_pred EEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccc
Confidence 999999999999998885 366799999999999999999999999999999999999999999999999885
Q ss_pred -----------------CHHHHHHHhhhcccCCCcccceeeccCCc
Q 006272 439 -----------------DVEAYIHRSGRTGRAGVEAAETITQVSDS 467 (652)
Q Consensus 439 -----------------s~~~y~qr~GR~gR~g~~~~~~i~~~~~~ 467 (652)
|..+|+||+|||||. ..|.++ .+++..
T Consensus 293 ~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cy-rL~t~~ 336 (819)
T TIGR01970 293 ARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCY-RLWSEE 336 (819)
T ss_pred cccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEE-EeCCHH
Confidence 446799999999999 565554 444433
No 58
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=3.4e-39 Score=379.79 Aligned_cols=312 Identities=18% Similarity=0.258 Sum_probs=237.9
Q ss_pred HHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEecc
Q 006272 118 VPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196 (652)
Q Consensus 118 ~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt 196 (652)
..+.+.+++ .|| .|+++|+++|+.++.|+|++++||||||||++++++++..... +.++|||+||
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~-------------g~~aLVl~PT 131 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALK-------------GKKCYIILPT 131 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhc-------------CCeEEEEECH
Confidence 344566666 799 6999999999999999999999999999999766665543221 3469999999
Q ss_pred HHHHHHHHHHHHHHhcCC--CceEEEEeCCcchHHHHH---HhcC-CCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcc
Q 006272 197 RELAKQVHEDFDVYGGAV--GLTSCCLYGGAPYHAQEF---KLKK-GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270 (652)
Q Consensus 197 reLa~q~~~~~~~~~~~~--~~~~~~~~gg~~~~~~~~---~~~~-~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEa 270 (652)
++|+.|+++.++.++... ++.+..++|+.+...+.. .+.. .++|+|+||++|.+++..- . ..++++||||||
T Consensus 132 reLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEA 209 (1638)
T PRK14701 132 TLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDV 209 (1638)
T ss_pred HHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECc
Confidence 999999999999988765 467778889988776643 3333 5999999999999877642 2 267999999999
Q ss_pred hhhhh-----------cCcHHHHHH----HHH----------------------hccCCCCce-EEEEcccCChHHHHHH
Q 006272 271 DEMLR-----------MGFVEDVEL----ILG----------------------KVEDANKVQ-TLLFSATLPSWVKHIS 312 (652)
Q Consensus 271 h~~l~-----------~gf~~~~~~----i~~----------------------~~~~~~~~q-~l~~SAT~~~~~~~~~ 312 (652)
|+|++ +||.+++.. |+. .++. ..| ++++|||+++... .
T Consensus 210 D~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ll~~SAT~~~r~~--~ 285 (1638)
T PRK14701 210 DAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGN--KIGCLIVASATGKAKGD--R 285 (1638)
T ss_pred eeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCC--CccEEEEEecCCCchhH--H
Confidence 99987 588888864 332 1122 345 6779999986311 1
Q ss_pred HHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhH---HHHHHHhcC----C
Q 006272 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKES---ASQLADLLP----G 385 (652)
Q Consensus 313 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~---~~~l~~~l~----~ 385 (652)
..++ ..+..+.+.. ......++.+.++.+....+ ..+..++... +..+||||+|++. |+.++..|. .
T Consensus 286 ~~l~-~~~l~f~v~~--~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~ 359 (1638)
T PRK14701 286 VKLY-RELLGFEVGS--GRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFK 359 (1638)
T ss_pred HHHh-hcCeEEEecC--CCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCe
Confidence 1223 2333344322 22455677788776655544 4566677655 4689999999875 588999887 5
Q ss_pred CcccccccchHHHHHHHhhhcCCCceEEEEc----cccccCCCCCC-ccEEEEcCCCC---CHHHHHHHh----------
Q 006272 386 ARALHGDIQQSQREVTLAGFRSGKFMTLVAT----NVAARGLDIND-VQLIIQCEPPR---DVEAYIHRS---------- 447 (652)
Q Consensus 386 ~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT----~~~~~Gldi~~-v~~VI~~~~p~---s~~~y~qr~---------- 447 (652)
+..+||+ |..+++.|++|+++||||| ++++||||+|+ |++|||||+|. +++.|.|..
T Consensus 360 a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~ 434 (1638)
T PRK14701 360 IELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEI 434 (1638)
T ss_pred EEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHH
Confidence 6789985 8899999999999999999 58999999999 99999999999 888887776
Q ss_pred ---hhcccCCCcccce
Q 006272 448 ---GRTGRAGVEAAET 460 (652)
Q Consensus 448 ---GR~gR~g~~~~~~ 460 (652)
||+||.|..+.+.
T Consensus 435 ~~~~~a~~~g~~~~~~ 450 (1638)
T PRK14701 435 LKIEEELKEGIPIEGV 450 (1638)
T ss_pred HHhhhhcccCCcchhH
Confidence 9999999765543
No 59
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=6.1e-39 Score=359.60 Aligned_cols=294 Identities=20% Similarity=0.270 Sum_probs=224.2
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH-HHhcC
Q 006272 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGA 213 (652)
Q Consensus 135 ~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~-~~~~~ 213 (652)
+-.+.+..+.+++++|++|+||||||++|.+|+++.... ..++||++|||++|.|+++.+. .++..
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-------------~~~ilvlqPrR~aA~qia~rva~~l~~~ 75 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-------------NGKIIMLEPRRLAARNVAQRLAEQLGEK 75 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-------------CCeEEEECChHHHHHHHHHHHHHHhCcc
Confidence 345566777789999999999999999999999975321 1369999999999999999985 45555
Q ss_pred CCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchh-hhhcCc-HHHHHHHHHhccC
Q 006272 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE-MLRMGF-VEDVELILGKVED 291 (652)
Q Consensus 214 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~-~l~~gf-~~~~~~i~~~~~~ 291 (652)
.+..+...+++... .....+|+|+|||+|++++..+ ..++++++|||||+|+ .++..+ ...+..++..++.
T Consensus 76 ~g~~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~ 148 (812)
T PRK11664 76 PGETVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRD 148 (812)
T ss_pred cCceEEEEecCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCc
Confidence 67777776665432 2334789999999999998864 4699999999999997 344432 2223445555655
Q ss_pred CCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhh-----hHHHHHHhhCCCCeE
Q 006272 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ-----VIPDIIRCYSSGGRT 366 (652)
Q Consensus 292 ~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~ll~~~~~~~~~ 366 (652)
+.|+++||||++... ...++ .+...+...+. ...+.+.|+.+....+.. .+..++.. ..+.+
T Consensus 149 --~lqlilmSATl~~~~---l~~~~-~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~i 215 (812)
T PRK11664 149 --DLKLLIMSATLDNDR---LQQLL-PDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSL 215 (812)
T ss_pred --cceEEEEecCCCHHH---HHHhc-CCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCE
Confidence 789999999998752 34566 34445544332 234667776665544432 23333322 36899
Q ss_pred EEEecchhHHHHHHHhcC-------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCC-
Q 006272 367 IIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR- 438 (652)
Q Consensus 367 iVF~~s~~~~~~l~~~l~-------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~- 438 (652)
||||+++.+++.+++.|. .+..+||+|++.+|..++..|++|..+||||||++++|||||+|++|||+++|+
T Consensus 216 LVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~ 295 (812)
T PRK11664 216 LLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERV 295 (812)
T ss_pred EEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCccc
Confidence 999999999999999886 366799999999999999999999999999999999999999999999988775
Q ss_pred -----------------CHHHHHHHhhhcccCCCcccceee
Q 006272 439 -----------------DVEAYIHRSGRTGRAGVEAAETIT 462 (652)
Q Consensus 439 -----------------s~~~y~qr~GR~gR~g~~~~~~i~ 462 (652)
|.++|+||+|||||. ..|.++-+
T Consensus 296 ~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL 335 (812)
T PRK11664 296 ARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHL 335 (812)
T ss_pred ccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEe
Confidence 446899999999999 46555443
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=7.5e-39 Score=335.77 Aligned_cols=288 Identities=23% Similarity=0.258 Sum_probs=204.4
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcch
Q 006272 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~ 227 (652)
|++++||||||||++|++|++..+... ...+++|++|+++|+.|+++.+..++.. .+..+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-----------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~ 66 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-----------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSF 66 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-----------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHH
Confidence 689999999999999999999886542 2336999999999999999999987432 33334443321
Q ss_pred HH------------HHHHh------cCCCcEEEeCcHHHHHHHHhCC----cCCC--CceEEecCcchhhhhcCcHHHHH
Q 006272 228 HA------------QEFKL------KKGIDVVIGTPGRIKDHIERGN----IDLS--SLKFRVLDEADEMLRMGFVEDVE 283 (652)
Q Consensus 228 ~~------------~~~~~------~~~~~Ilv~Tp~rl~~~l~~~~----~~l~--~~~~lViDEah~~l~~gf~~~~~ 283 (652)
.. ..... ....+|+|+||++++..+.... +.+. ..++|||||||.++++++.. +.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~ 145 (358)
T TIGR01587 67 KRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-IL 145 (358)
T ss_pred HHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HH
Confidence 10 00000 1236799999999988776521 1111 23789999999998865443 66
Q ss_pred HHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEc--cCCchhhhhhHHHHHHhhC
Q 006272 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL--PCSSSARSQVIPDIIRCYS 361 (652)
Q Consensus 284 ~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ll~~~~ 361 (652)
.++..+.. ...|+++||||+|..+..+...+... ....... .. .......+.+. ......+...+..++....
T Consensus 146 ~~l~~l~~-~~~~~i~~SATlp~~l~~~~~~~~~~-~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 220 (358)
T TIGR01587 146 AVLEVLKD-NDVPILLMSATLPKFLKEYAEKIGYV-EFNEPLD-LK--EERRFERHRFIKIESDKVGEISSLERLLEFIK 220 (358)
T ss_pred HHHHHHHH-cCCCEEEEecCchHHHHHHHhcCCCc-ccccCCC-Cc--cccccccccceeeccccccCHHHHHHHHHHhh
Confidence 66666653 36899999999997776665554311 1110000 00 00001112221 1122234556666776666
Q ss_pred CCCeEEEEecchhHHHHHHHhcC------CCcccccccchHHHHH----HHhhhcCCCceEEEEccccccCCCCCCccEE
Q 006272 362 SGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREV----TLAGFRSGKFMTLVATNVAARGLDINDVQLI 431 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~------~~~~lh~~~~~~~R~~----~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V 431 (652)
.++++||||+|++.|+.++..|. .+..+||++++.+|.. +++.|++++.+|||||+++++|||++ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 67899999999999999999885 3678999999999976 48999999999999999999999995 8999
Q ss_pred EEcCCCCCHHHHHHHhhhcccCCCccc
Q 006272 432 IQCEPPRDVEAYIHRSGRTGRAGVEAA 458 (652)
Q Consensus 432 I~~~~p~s~~~y~qr~GR~gR~g~~~~ 458 (652)
|++..| +++|+||+||+||.|....
T Consensus 300 i~~~~~--~~~~iqr~GR~gR~g~~~~ 324 (358)
T TIGR01587 300 ITELAP--IDSLIQRLGRLHRYGRKNG 324 (358)
T ss_pred EEcCCC--HHHHHHHhccccCCCCCCC
Confidence 999877 7899999999999996543
No 61
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.1e-38 Score=338.80 Aligned_cols=316 Identities=21% Similarity=0.224 Sum_probs=233.7
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
+|+ .|||+|..+++.++.|+ |+.+.||+|||++|.+|++.....+ +.++||+||++||.|.+++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G-------------~~v~VvTptreLA~qdae~ 163 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAG-------------LPVHVITVNDYLAERDAEL 163 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcC-------------CeEEEEcCcHHHHHHHHHH
Confidence 466 69999999999999999 9999999999999999999876543 3699999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHH-HHHHHhCC-------------------------cCCC
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERGN-------------------------IDLS 260 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~-------------------------~~l~ 260 (652)
+..+....++++.+++|+.+.. .+....+++|+|+|...| .++|..+. ....
T Consensus 164 ~~~l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 241 (656)
T PRK12898 164 MRPLYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR 241 (656)
T ss_pred HHHHHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc
Confidence 9999999999999999997643 455556799999999887 44443321 1235
Q ss_pred CceEEecCcchhhh-h--------------c---CcHHHHHHHHHhccCC------------------------------
Q 006272 261 SLKFRVLDEADEML-R--------------M---GFVEDVELILGKVEDA------------------------------ 292 (652)
Q Consensus 261 ~~~~lViDEah~~l-~--------------~---gf~~~~~~i~~~~~~~------------------------------ 292 (652)
.+.+.||||+|.+| | . .+......+...+...
T Consensus 242 ~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~ 321 (656)
T PRK12898 242 GLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLP 321 (656)
T ss_pred ccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcch
Confidence 57899999999865 0 0 1111111111111000
Q ss_pred ---------------------------------C----------------------------------------------
Q 006272 293 ---------------------------------N---------------------------------------------- 293 (652)
Q Consensus 293 ---------------------------------~---------------------------------------------- 293 (652)
.
T Consensus 322 ~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~ 401 (656)
T PRK12898 322 PAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITY 401 (656)
T ss_pred hhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehH
Confidence 0
Q ss_pred ------CceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhC-CCCeE
Q 006272 294 ------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRT 366 (652)
Q Consensus 294 ------~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~ 366 (652)
-.++..||||++.....+...|. .++..|.. .++.. ....+.++.+...+|...+..++.... .+.++
T Consensus 402 q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~-l~vv~IPt---~kp~~-r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pv 476 (656)
T PRK12898 402 QRFFRRYLRLAGMTGTAREVAGELWSVYG-LPVVRIPT---NRPSQ-RRHLPDEVFLTAAAKWAAVAARVRELHAQGRPV 476 (656)
T ss_pred HHHHHhhHHHhcccCcChHHHHHHHHHHC-CCeEEeCC---CCCcc-ceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCE
Confidence 12566788888876666656554 33333322 22221 112333455667778888888876642 45789
Q ss_pred EEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCC---Ccc-----EEEEc
Q 006272 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN---DVQ-----LIIQC 434 (652)
Q Consensus 367 iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~---~v~-----~VI~~ 434 (652)
||||+|+..++.|+..|. .+..|||.+. +|+..+..|..+...|+||||+++||+||+ +|. |||||
T Consensus 477 LIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~ 554 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILT 554 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEc
Confidence 999999999999999997 6778999865 455555566666667999999999999999 776 99999
Q ss_pred CCCCCHHHHHHHhhhcccCCCcccceeeccCCc
Q 006272 435 EPPRDVEAYIHRSGRTGRAGVEAAETITQVSDS 467 (652)
Q Consensus 435 ~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~ 467 (652)
++|.|.+.|+||+|||||.|..|.+..++..++
T Consensus 555 d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 555 ERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred CCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 999999999999999999999987766554433
No 62
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-38 Score=310.22 Aligned_cols=322 Identities=22% Similarity=0.261 Sum_probs=242.9
Q ss_pred HHHHHHHHC-CCCCC-hHHHHHHHHHHhc-CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEec
Q 006272 119 PLREKLKSK-GIESL-FPIQAMTFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (652)
Q Consensus 119 ~l~~~l~~~-g~~~~-~~~Q~~~i~~~l~-~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 195 (652)
.+.++|++. |+..+ ++.|++|+..+.. ++||.+++|||+||+|||+||.|- ..+ ..||++|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~--~~g--------------ITIV~SP 69 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV--HGG--------------ITIVISP 69 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH--hCC--------------eEEEehH
Confidence 355667654 77665 7999999998885 579999999999999999999883 222 4899999
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh------cCCCcEEEeCcHHHHHHHH----hCCcCCCCceEE
Q 006272 196 TRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL------KKGIDVVIGTPGRIKDHIE----RGNIDLSSLKFR 265 (652)
Q Consensus 196 treLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~------~~~~~Ilv~Tp~rl~~~l~----~~~~~l~~~~~l 265 (652)
..+|+..+.+++.++. +.+..+....+..+..+.+ +....|++-||+....-.. +...+-+.++|+
T Consensus 70 LiALIkDQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~ 145 (641)
T KOG0352|consen 70 LIALIKDQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYI 145 (641)
T ss_pred HHHHHHHHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeE
Confidence 9999999999988753 4444454444444433332 3457899999997643322 222345668999
Q ss_pred ecCcchhhhhcC--cHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccC-CeEEEEccCcccccCCCceEEEc
Q 006272 266 VLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSD-KKTIDLVGNEKMKASTNVRHIVL 342 (652)
Q Consensus 266 ViDEah~~l~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 342 (652)
|+||||++.+|| |++++..+-......+.+..+.++||.++.++..+-..++.. |..+. .++.--..+++
T Consensus 146 vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiF-------kTP~FR~NLFY 218 (641)
T KOG0352|consen 146 VVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIF-------KTPTFRDNLFY 218 (641)
T ss_pred EechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhc-------cCcchhhhhhH
Confidence 999999999998 999998877666555678999999999999987766655322 22221 11111112222
Q ss_pred cC----CchhhhhhHHHHHHh-hC-----------CCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHH
Q 006272 343 PC----SSSARSQVIPDIIRC-YS-----------SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402 (652)
Q Consensus 343 ~~----~~~~~~~~l~~ll~~-~~-----------~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~ 402 (652)
.. .-.+-+..|.++... +. ..+-.||||.|+++|++++-.|. .+..||++|...+|.++.
T Consensus 219 D~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQ 298 (641)
T KOG0352|consen 219 DNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQ 298 (641)
T ss_pred HHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHH
Confidence 11 112233334443322 11 23568999999999999999987 677899999999999999
Q ss_pred hhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCc
Q 006272 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDS 467 (652)
Q Consensus 403 ~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~ 467 (652)
+.|.+++..||+||..+++|+|-|+|++|||+++|.|+..|.|.+|||||.|....+.+++..++
T Consensus 299 e~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D 363 (641)
T KOG0352|consen 299 EKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQD 363 (641)
T ss_pred HHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999988776555
No 63
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-37 Score=345.52 Aligned_cols=330 Identities=22% Similarity=0.254 Sum_probs=260.1
Q ss_pred HHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHH
Q 006272 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (652)
Q Consensus 122 ~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~ 201 (652)
-....+|+..++|-|.++|..++.|+|+++.+|||.||++||+||++ +..+ .+|||.|..+|++
T Consensus 255 ~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~--l~~g--------------itvVISPL~SLm~ 318 (941)
T KOG0351|consen 255 LLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPAL--LLGG--------------VTVVISPLISLMQ 318 (941)
T ss_pred HHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccc--ccCC--------------ceEEeccHHHHHH
Confidence 33456799999999999999999999999999999999999999987 4332 4899999999998
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh---c-C--CCcEEEeCcHHHHHHH--HhCCcCCCC---ceEEecCcc
Q 006272 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL---K-K--GIDVVIGTPGRIKDHI--ERGNIDLSS---LKFRVLDEA 270 (652)
Q Consensus 202 q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~---~-~--~~~Ilv~Tp~rl~~~l--~~~~~~l~~---~~~lViDEa 270 (652)
.+...+.. .++....+.++.....+...+ . . .++|++.||+.+...- ......|.. +.++|||||
T Consensus 319 DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEA 394 (941)
T KOG0351|consen 319 DQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEA 394 (941)
T ss_pred HHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHH
Confidence 87777643 568888888887775443322 2 2 5899999999985432 222223444 889999999
Q ss_pred hhhhhcC--cHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchh
Q 006272 271 DEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348 (652)
Q Consensus 271 h~~l~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (652)
|+.+.|| |++++..+.......+.+.+|.+|||.+..+...+-..+......+... ....+++...+..-....
T Consensus 395 HCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~----sfnR~NL~yeV~~k~~~~ 470 (941)
T KOG0351|consen 395 HCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS----SFNRPNLKYEVSPKTDKD 470 (941)
T ss_pred HHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc----cCCCCCceEEEEeccCcc
Confidence 9999998 9999998887776666789999999999999888777775433333221 233345554444333233
Q ss_pred hhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCC
Q 006272 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424 (652)
Q Consensus 349 ~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gld 424 (652)
....+...+..+.+...+||||.++.+|+.++..|+ .+..||++|+..+|..+...|..++++|+|||-++++|||
T Consensus 471 ~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGId 550 (941)
T KOG0351|consen 471 ALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGID 550 (941)
T ss_pred chHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCC
Confidence 444445555566688999999999999999999998 6789999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHH
Q 006272 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAA 476 (652)
Q Consensus 425 i~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~ 476 (652)
.|||+.||||.+|.|.+.|+|-+|||||.|....+.+++ ...+...+..++
T Consensus 551 K~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y-~~~D~~~l~~ll 601 (941)
T KOG0351|consen 551 KPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLY-GYADISELRRLL 601 (941)
T ss_pred CCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEec-chhHHHHHHHHH
Confidence 999999999999999999999999999999887665544 433444444333
No 64
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=4.1e-37 Score=355.98 Aligned_cols=289 Identities=22% Similarity=0.338 Sum_probs=218.8
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccH
Q 006272 118 VPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (652)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 197 (652)
..+.+.+.+.....|+|+|+.+++.++.|+|++++||||||||+ |++|++..+... ++++|||+|||
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~------------g~~vLIL~PTr 131 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK------------GKRCYIILPTT 131 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc------------CCeEEEEeCHH
Confidence 34455566555557999999999999999999999999999997 777877665431 35799999999
Q ss_pred HHHHHHHHHHHHHhcCCCceEE---EEeCCcchHHHHH---Hhc-CCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcc
Q 006272 198 ELAKQVHEDFDVYGGAVGLTSC---CLYGGAPYHAQEF---KLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270 (652)
Q Consensus 198 eLa~q~~~~~~~~~~~~~~~~~---~~~gg~~~~~~~~---~~~-~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEa 270 (652)
+||.|+++.++.++...++.+. .++|+.+...+.. .+. .+++|+|+||++|.+++.. +.. ++++||||||
T Consensus 132 eLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEa 208 (1171)
T TIGR01054 132 LLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDV 208 (1171)
T ss_pred HHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeCh
Confidence 9999999999999887766543 4678887765432 333 3599999999999988765 222 8999999999
Q ss_pred hhhhh-----------cCcHHH-HHHHHH----------------------hccCCCCce--EEEEccc-CChHHHHHHH
Q 006272 271 DEMLR-----------MGFVED-VELILG----------------------KVEDANKVQ--TLLFSAT-LPSWVKHIST 313 (652)
Q Consensus 271 h~~l~-----------~gf~~~-~~~i~~----------------------~~~~~~~~q--~l~~SAT-~~~~~~~~~~ 313 (652)
|+|++ +||.++ +..++. .++. ..| +++|||| .|..+..
T Consensus 209 D~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~q~~li~~SAT~~p~~~~~--- 283 (1171)
T TIGR01054 209 DALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPG--KKRGCLIVSSATGRPRGKRA--- 283 (1171)
T ss_pred HhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhh--ccCcEEEEEeCCCCccccHH---
Confidence 99998 688764 555443 2333 334 6779999 5655432
Q ss_pred HhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecch---hHHHHHHHhcC----CC
Q 006272 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK---ESASQLADLLP----GA 386 (652)
Q Consensus 314 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~---~~~~~l~~~l~----~~ 386 (652)
.++ .....+.+... .....++.+.++.+.. +...+..++..+ +.++||||+++ +.|+.|+..|. .+
T Consensus 284 ~l~-r~ll~~~v~~~--~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a 356 (1171)
T TIGR01054 284 KLF-RELLGFEVGGG--SDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKA 356 (1171)
T ss_pred HHc-ccccceEecCc--cccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceE
Confidence 222 22223443322 2345677777765543 234566677665 36899999999 99999999997 56
Q ss_pred cccccccchHHHHHHHhhhcCCCceEEEE----ccccccCCCCCC-ccEEEEcCCCC
Q 006272 387 RALHGDIQQSQREVTLAGFRSGKFMTLVA----TNVAARGLDIND-VQLIIQCEPPR 438 (652)
Q Consensus 387 ~~lh~~~~~~~R~~~~~~f~~g~~~vLva----T~~~~~Gldi~~-v~~VI~~~~p~ 438 (652)
..+||++++ .+++.|++|+++|||| ||+++||||+|+ |++|||||+|.
T Consensus 357 ~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 357 VAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred EEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 789999973 6899999999999999 599999999999 89999999997
No 65
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.6e-37 Score=332.83 Aligned_cols=300 Identities=18% Similarity=0.170 Sum_probs=215.8
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH
Q 006272 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (652)
Q Consensus 129 ~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 208 (652)
...|+++|.++++.++.+++.++++|||+|||+++...+...+... ..++|||+||++|+.|+.+.+.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~------------~~~vLilvpt~eL~~Q~~~~l~ 179 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENY------------EGKVLIIVPTTSLVTQMIDDFV 179 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcC------------CCeEEEEECcHHHHHHHHHHHH
Confidence 3589999999999999999999999999999997654332222221 2269999999999999999999
Q ss_pred HHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHh
Q 006272 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (652)
Q Consensus 209 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~ 288 (652)
.++......+..+.+|.... ...+|+|+||++|.+... ..+.++++||+||||++.. ..+..++..
T Consensus 180 ~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~il~~ 245 (501)
T PHA02558 180 DYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSIITK 245 (501)
T ss_pred HhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc----hhHHHHHHh
Confidence 98765445565666665432 347999999999976542 2367899999999999974 446677777
Q ss_pred ccCCCCceEEEEcccCChHHHHHH--HHhcccCCeEEEEccC--cccccCCCceEEE---------------------cc
Q 006272 289 VEDANKVQTLLFSATLPSWVKHIS--TKFLKSDKKTIDLVGN--EKMKASTNVRHIV---------------------LP 343 (652)
Q Consensus 289 ~~~~~~~q~l~~SAT~~~~~~~~~--~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~---------------------~~ 343 (652)
++. ..++++||||++....... ..++......+..... ........+.... ..
T Consensus 246 ~~~--~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l 323 (501)
T PHA02558 246 LDN--CKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYI 323 (501)
T ss_pred hhc--cceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHH
Confidence 754 5689999999865322111 1111110000000000 0000000000000 11
Q ss_pred CCchhhhhhHHHHHHhh-CCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEc-c
Q 006272 344 CSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT-N 417 (652)
Q Consensus 344 ~~~~~~~~~l~~ll~~~-~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT-~ 417 (652)
+....+...+..++..+ ..+.++||||++.++++.|++.|. .+..+||++++.+|..+++.|+++...||||| +
T Consensus 324 ~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~ 403 (501)
T PHA02558 324 TSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYG 403 (501)
T ss_pred hccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcc
Confidence 12223444444444332 356789999999999999999997 68899999999999999999999999999998 9
Q ss_pred ccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCc
Q 006272 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456 (652)
Q Consensus 418 ~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~ 456 (652)
++++|+|+|++++||++.++.|...|+||+||++|.+..
T Consensus 404 ~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~ 442 (501)
T PHA02558 404 VFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGS 442 (501)
T ss_pred eeccccccccccEEEEecCCcchhhhhhhhhccccCCCC
Confidence 999999999999999999999999999999999998754
No 66
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.9e-37 Score=334.19 Aligned_cols=321 Identities=17% Similarity=0.244 Sum_probs=227.4
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.|+ .|+++|..+++.++.|+ |+.+.||+|||++|++|++.....+. .++|++||++||.|.+++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~-------------~v~VvTpt~~LA~qd~e~ 138 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGK-------------GVHLITVNDYLAKRDAEE 138 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCC-------------CeEEEeCCHHHHHHHHHH
Confidence 477 79999999999998887 99999999999999999986665433 599999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHH-HHHHHhC------CcCCCCceEEecCcchhhhh----
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLR---- 275 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~------~~~l~~~~~lViDEah~~l~---- 275 (652)
+..+...+++++.+++|+.+...+.+. ...++|+|+||++| .++|... ...+..+.++||||||.|+=
T Consensus 139 ~~~l~~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~ 217 (790)
T PRK09200 139 MGQVYEFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQ 217 (790)
T ss_pred HHHHHhhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCC
Confidence 999999999999999999985444333 34599999999999 5555443 23568899999999999861
Q ss_pred ------------cCcHHHHHHHHHhccCC------CCceEEEEccc----------CC-----------hHHHHHHH--H
Q 006272 276 ------------MGFVEDVELILGKVEDA------NKVQTLLFSAT----------LP-----------SWVKHIST--K 314 (652)
Q Consensus 276 ------------~gf~~~~~~i~~~~~~~------~~~q~l~~SAT----------~~-----------~~~~~~~~--~ 314 (652)
..+...+..+...+... ...+.+.+|.. ++ .++..... .
T Consensus 218 tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~ 297 (790)
T PRK09200 218 TPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHV 297 (790)
T ss_pred CceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHH
Confidence 11333344444443221 01122222221 00 01111000 1
Q ss_pred hcccCCeEE-----------------------------------------------------------------------
Q 006272 315 FLKSDKKTI----------------------------------------------------------------------- 323 (652)
Q Consensus 315 ~~~~~~~~i----------------------------------------------------------------------- 323 (652)
++..+...+
T Consensus 298 ~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~ 377 (790)
T PRK09200 298 LFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEE 377 (790)
T ss_pred HhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHH
Confidence 111111110
Q ss_pred -----------EEccCcccccCCCceEEEccCCchhhhhhHHHHHHh-hCCCCeEEEEecchhHHHHHHHhcC----CCc
Q 006272 324 -----------DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP----GAR 387 (652)
Q Consensus 324 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~iVF~~s~~~~~~l~~~l~----~~~ 387 (652)
..++..++........ .+.+....+...+...+.. ...+.++||||+|+..++.|+..|. .+.
T Consensus 378 ~e~~~~Y~l~v~~IPt~kp~~r~d~~~-~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~ 456 (790)
T PRK09200 378 KEFFEVYNMEVVQIPTNRPIIRIDYPD-KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHN 456 (790)
T ss_pred HHHHHHhCCcEEECCCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEE
Confidence 0111111111111111 1123445677777666654 3467899999999999999999997 678
Q ss_pred ccccccchHHHHHHHhhhcCCCceEEEEccccccCCCC---CCcc-----EEEEcCCCCCHHHHHHHhhhcccCCCcccc
Q 006272 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI---NDVQ-----LIIQCEPPRDVEAYIHRSGRTGRAGVEAAE 459 (652)
Q Consensus 388 ~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi---~~v~-----~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~ 459 (652)
.+||.+.+.++..+...+..| .|+||||+++||+|| ++|. |||+|++|.|.+.|+||+|||||.|..|.+
T Consensus 457 ~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 457 LLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred EecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 899999998888888887766 799999999999999 6998 999999999999999999999999999877
Q ss_pred eeeccCCc
Q 006272 460 TITQVSDS 467 (652)
Q Consensus 460 ~i~~~~~~ 467 (652)
..+....+
T Consensus 535 ~~~is~eD 542 (790)
T PRK09200 535 QFFISLED 542 (790)
T ss_pred EEEEcchH
Confidence 66554443
No 67
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.7e-36 Score=300.98 Aligned_cols=330 Identities=23% Similarity=0.253 Sum_probs=235.2
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHH
Q 006272 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (652)
Q Consensus 128 g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 207 (652)
+..+++.+|......++.+ ++|++.|||.|||+.+++-+...+.+... .+|+++||+-|+.|.++.|
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~------------kvlfLAPTKPLV~Qh~~~~ 78 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG------------KVLFLAPTKPLVLQHAEFC 78 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC------------eEEEecCCchHHHHHHHHH
Confidence 3447889999988887765 99999999999999999999888876432 5999999999999999999
Q ss_pred HHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHH-HHHH
Q 006272 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV-ELIL 286 (652)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~-~~i~ 286 (652)
.++.....-.++.++|..+.......+. ..+|+|+||..+.+-|..+.+++.++.+|||||||+-....-+..+ ...+
T Consensus 79 ~~v~~ip~~~i~~ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~ 157 (542)
T COG1111 79 RKVTGIPEDEIAALTGEVRPEEREELWA-KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYL 157 (542)
T ss_pred HHHhCCChhheeeecCCCChHHHHHHHh-hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHH
Confidence 9998766778889999988876655544 4799999999999999999999999999999999997543323333 3333
Q ss_pred HhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCce-----EEEcc------------------
Q 006272 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR-----HIVLP------------------ 343 (652)
Q Consensus 287 ~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~------------------ 343 (652)
.. ..++.++.||||.......+..-.-+.....|.+...........+. .+-+.
T Consensus 158 ~~---~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~ 234 (542)
T COG1111 158 RS---AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKP 234 (542)
T ss_pred Hh---ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHH
Confidence 32 23678999999986655443322111111111111100000000000 00000
Q ss_pred ---------------------------------CC-c-------------------------------------------
Q 006272 344 ---------------------------------CS-S------------------------------------------- 346 (652)
Q Consensus 344 ---------------------------------~~-~------------------------------------------- 346 (652)
.. .
T Consensus 235 ~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~ 314 (542)
T COG1111 235 RLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEAT 314 (542)
T ss_pred HHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhc
Confidence 00 0
Q ss_pred --------------------------------hhhhhhHHHHHHhh---CCCCeEEEEecchhHHHHHHHhcC----CCc
Q 006272 347 --------------------------------SARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP----GAR 387 (652)
Q Consensus 347 --------------------------------~~~~~~l~~ll~~~---~~~~~~iVF~~s~~~~~~l~~~l~----~~~ 387 (652)
..|+..+..++... ..+.++|||++.+++|+.+...|. .+.
T Consensus 315 ~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~ 394 (542)
T COG1111 315 KGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR 394 (542)
T ss_pred ccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce
Confidence 11122222222221 234699999999999999999997 221
Q ss_pred ---------ccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCccc
Q 006272 388 ---------ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458 (652)
Q Consensus 388 ---------~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~ 458 (652)
-...+|+|.++.+++++|++|.++|||||++++.|||||+|++||+|++-.|+..++||.|||||. ..|.
T Consensus 395 ~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Gr 473 (542)
T COG1111 395 VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGR 473 (542)
T ss_pred eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCe
Confidence 123689999999999999999999999999999999999999999999999999999999999998 4555
Q ss_pred ceeeccCC-cchHHHHHH
Q 006272 459 ETITQVSD-SVIPAFKSA 475 (652)
Q Consensus 459 ~~i~~~~~-~~~~~~~~~ 475 (652)
.+|++... .+..+|...
T Consensus 474 v~vLvt~gtrdeayy~~s 491 (542)
T COG1111 474 VVVLVTEGTRDEAYYYSS 491 (542)
T ss_pred EEEEEecCchHHHHHHHH
Confidence 55554444 234444433
No 68
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=8.5e-37 Score=337.83 Aligned_cols=326 Identities=22% Similarity=0.317 Sum_probs=251.8
Q ss_pred cCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEE
Q 006272 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192 (652)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l-~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~li 192 (652)
..+++.+.+.++..++.++++.|+.++...+ .++|+|+++|||||||+.+++.|++.+..+. .++|+
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~------------~k~vY 81 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGG------------GKVVY 81 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcC------------CcEEE
Confidence 3478888899999999899999988886654 6699999999999999999999999998752 24999
Q ss_pred EeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchh
Q 006272 193 LLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE 272 (652)
Q Consensus 193 l~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~ 272 (652)
|+|+|+||.+++++|.+ ....++++...+|+...... ...+++|+|+||+.+-..+.+....+..+++|||||+|.
T Consensus 82 ivPlkALa~Ek~~~~~~-~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~ 157 (766)
T COG1204 82 IVPLKALAEEKYEEFSR-LEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHL 157 (766)
T ss_pred EeChHHHHHHHHHHhhh-HHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeee
Confidence 99999999999999993 34589999999999876642 234589999999999998888766788999999999998
Q ss_pred hhhcCcHHHHHHHHHhccCCC-CceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCC------
Q 006272 273 MLRMGFVEDVELILGKVEDAN-KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS------ 345 (652)
Q Consensus 273 ~l~~gf~~~~~~i~~~~~~~~-~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------ 345 (652)
+.+....+.++.|...+.... .+|++.+|||+|+.. . ...|++-... ................+.++...
T Consensus 158 l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~-e-vA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~ 234 (766)
T COG1204 158 LGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAE-E-VADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTW 234 (766)
T ss_pred cCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHH-H-HHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccc
Confidence 887766777777777765532 379999999999843 3 3444432222 11111111111111222222222
Q ss_pred -chhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----------------------------------------
Q 006272 346 -SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---------------------------------------- 384 (652)
Q Consensus 346 -~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~---------------------------------------- 384 (652)
.......+..++.....++++||||+|+..+...+..|.
T Consensus 235 ~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~ 314 (766)
T COG1204 235 PLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVL 314 (766)
T ss_pred cccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHH
Confidence 123345666677777889999999999998876665552
Q ss_pred -CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEE----EcC-----CCCCHHHHHHHhhhcccCC
Q 006272 385 -GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII----QCE-----PPRDVEAYIHRSGRTGRAG 454 (652)
Q Consensus 385 -~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI----~~~-----~p~s~~~y~qr~GR~gR~g 454 (652)
.+..+|++|+..+|..+.+.|+.|.++||+||.+++.|+|+|.-.+|| -|+ .+-+.-+|+|++|||||-|
T Consensus 315 ~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg 394 (766)
T COG1204 315 RGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPG 394 (766)
T ss_pred hCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCC
Confidence 466899999999999999999999999999999999999999877666 366 5668999999999999999
Q ss_pred Cccc
Q 006272 455 VEAA 458 (652)
Q Consensus 455 ~~~~ 458 (652)
-+..
T Consensus 395 ~d~~ 398 (766)
T COG1204 395 YDDY 398 (766)
T ss_pred cCCC
Confidence 6543
No 69
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.3e-36 Score=327.58 Aligned_cols=317 Identities=20% Similarity=0.243 Sum_probs=223.0
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
+|+ .|+++|..+.+.++.|+ |+.++||+|||++|.+|++-....+. .++|++||++||.|.+++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~-------------~V~VvTpt~~LA~qdae~ 116 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGK-------------GVHVVTVNDYLAQRDAEW 116 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCC-------------CEEEEcCCHHHHHHHHHH
Confidence 465 69999999999888776 99999999999999999954333322 389999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHH-HHHHHhC------CcCCCCceEEecCcchhhhhcC--
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLRMG-- 277 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~------~~~l~~~~~lViDEah~~l~~g-- 277 (652)
+..+...+++++.+++|+.+...+.... .++|+|+||++| .+++..+ .+.++.+.++||||+|+|+-..
T Consensus 117 ~~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaR 194 (745)
T TIGR00963 117 MGQVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEAR 194 (745)
T ss_pred HHHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhh
Confidence 9999999999999999998876544444 489999999999 8888765 3567899999999999987311
Q ss_pred --------------cHHHHHHHHHhccCC------CCceEEEE-------------------------------------
Q 006272 278 --------------FVEDVELILGKVEDA------NKVQTLLF------------------------------------- 300 (652)
Q Consensus 278 --------------f~~~~~~i~~~~~~~------~~~q~l~~------------------------------------- 300 (652)
.......|...+... .+.+.+.+
T Consensus 195 tpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~ 274 (745)
T TIGR00963 195 TPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKE 274 (745)
T ss_pred hHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHH
Confidence 111112222222110 00111222
Q ss_pred ------------------------------------------------------------------------cccCChHH
Q 006272 301 ------------------------------------------------------------------------SATLPSWV 308 (652)
Q Consensus 301 ------------------------------------------------------------------------SAT~~~~~ 308 (652)
|.|.....
T Consensus 275 l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~ 354 (745)
T TIGR00963 275 LFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEE 354 (745)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHH
Confidence 22221111
Q ss_pred HHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhH-HHHHHhhCCCCeEEEEecchhHHHHHHHhcC---
Q 006272 309 KHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI-PDIIRCYSSGGRTIIFTETKESASQLADLLP--- 384 (652)
Q Consensus 309 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~--- 384 (652)
..+...|- . ..+ .++..++.........+ .....++...+ ..+...+..+.++||||+|+..++.|+..|.
T Consensus 355 ~E~~~iY~-l--~vv-~IPtnkp~~R~d~~d~i-~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~g 429 (745)
T TIGR00963 355 EEFEKIYN-L--EVV-VVPTNRPVIRKDLSDLV-YKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERG 429 (745)
T ss_pred HHHHHHhC-C--CEE-EeCCCCCeeeeeCCCeE-EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcC
Confidence 11111110 0 000 00000000000000111 11233455444 4444556678999999999999999999997
Q ss_pred -CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCC-------ccEEEEcCCCCCHHHHHHHhhhcccCCCc
Q 006272 385 -GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND-------VQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456 (652)
Q Consensus 385 -~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~-------v~~VI~~~~p~s~~~y~qr~GR~gR~g~~ 456 (652)
....+|+. +.+|+..+..|+.+...|+|||++|+||+||+. ..|||+++.|.|.+.|.||+|||||.|.+
T Consensus 430 i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~ 507 (745)
T TIGR00963 430 IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDP 507 (745)
T ss_pred CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCC
Confidence 45678888 889999999999999999999999999999998 55999999999999999999999999999
Q ss_pred ccceeeccCCcc
Q 006272 457 AAETITQVSDSV 468 (652)
Q Consensus 457 ~~~~i~~~~~~~ 468 (652)
|.+..+...++.
T Consensus 508 G~s~~~ls~eD~ 519 (745)
T TIGR00963 508 GSSRFFLSLEDN 519 (745)
T ss_pred cceEEEEeccHH
Confidence 877665554443
No 70
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.7e-36 Score=337.54 Aligned_cols=349 Identities=24% Similarity=0.343 Sum_probs=274.6
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEec
Q 006272 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (652)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 195 (652)
....+...|.+.|+..|+++|.+|+..+.+|+|+||+.+||||||++|++||++++...+.. ++|+|.|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-----------~AL~lYP 123 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-----------RALLLYP 123 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-----------cEEEEec
Confidence 34556888999999999999999999999999999999999999999999999999986532 6899999
Q ss_pred cHHHHHHHHHHHHHHhcCCC--ceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCC----cCCCCceEEecCc
Q 006272 196 TRELAKQVHEDFDVYGGAVG--LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN----IDLSSLKFRVLDE 269 (652)
Q Consensus 196 treLa~q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~----~~l~~~~~lViDE 269 (652)
|++||+.+.+.|+++....+ +.+....|++............++||++||.+|..++.+.. +.++++++||+||
T Consensus 124 tnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDE 203 (851)
T COG1205 124 TNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDE 203 (851)
T ss_pred hhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEec
Confidence 99999999999999988776 78888888888877767778899999999999998765532 4578899999999
Q ss_pred chhhhhcCcHHHHHHHHHhccC-----CCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccC
Q 006272 270 ADEMLRMGFVEDVELILGKVED-----ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (652)
Q Consensus 270 ah~~l~~gf~~~~~~i~~~~~~-----~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 344 (652)
+|.+ .-.|..++..+++.+.. ..++|+|+.|||+.... .++..+........ +.. ...+....++++..
T Consensus 204 lHtY-rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~--v~~--~g~~~~~~~~~~~~ 277 (851)
T COG1205 204 LHTY-RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVP--VDE--DGSPRGLRYFVRRE 277 (851)
T ss_pred ceec-cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceee--ccC--CCCCCCceEEEEeC
Confidence 9977 44466666666555432 23689999999997754 44555554443331 111 12233333333332
Q ss_pred C---------chhhhhhHHHHHHh-hCCCCeEEEEecchhHHHHHHHhcC------------CCcccccccchHHHHHHH
Q 006272 345 S---------SSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP------------GARALHGDIQQSQREVTL 402 (652)
Q Consensus 345 ~---------~~~~~~~l~~ll~~-~~~~~~~iVF~~s~~~~~~l~~~l~------------~~~~lh~~~~~~~R~~~~ 402 (652)
+ .......+..++.. ...+-++|||+.++..++.+..... .+..++++|...+|.++.
T Consensus 278 p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie 357 (851)
T COG1205 278 PPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIE 357 (851)
T ss_pred CcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHH
Confidence 2 11223333333332 2366899999999999998862221 477899999999999999
Q ss_pred hhhcCCCceEEEEccccccCCCCCCccEEEEcCCCC-CHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHh
Q 006272 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLN 481 (652)
Q Consensus 403 ~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~-s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~ 481 (652)
..|++|+..++++|+++.-||||.+++.||.+..|. +..+++||+||+||.++.+..+++...+....+|......+++
T Consensus 358 ~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 358 AEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred HHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999999999999999999999999999999 9999999999999999888777777766666777766666665
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=7e-36 Score=309.58 Aligned_cols=289 Identities=19% Similarity=0.246 Sum_probs=198.5
Q ss_pred HHHHHHHHHhcCCc--EEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006272 135 IQAMTFDMVLDGSD--LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (652)
Q Consensus 135 ~Q~~~i~~~l~~~d--vl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 212 (652)
+|.++++.+.++.+ ++++||||||||++|++|++... .++++++|+++|+.|+++.++.+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~----------------~~~~~~~P~~aL~~~~~~~~~~~~~ 64 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGE----------------NDTIALYPTNALIEDQTEAIKEFVD 64 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcC----------------CCEEEEeChHHHHHHHHHHHHHHHH
Confidence 59999999998874 78999999999999999988421 1389999999999999999988764
Q ss_pred C----CCceEEEEeCCcchHH--H------------------HHHhcCCCcEEEeCcHHHHHHHHhC----C-c---CCC
Q 006272 213 A----VGLTSCCLYGGAPYHA--Q------------------EFKLKKGIDVVIGTPGRIKDHIERG----N-I---DLS 260 (652)
Q Consensus 213 ~----~~~~~~~~~gg~~~~~--~------------------~~~~~~~~~Ilv~Tp~rl~~~l~~~----~-~---~l~ 260 (652)
. .++.+..+.|....+. . .......++|+++||+.|..++... . . .+.
T Consensus 65 ~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~ 144 (357)
T TIGR03158 65 VFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYT 144 (357)
T ss_pred hcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhc
Confidence 3 3556666666532220 0 0011246889999999997665431 1 1 257
Q ss_pred CceEEecCcchhhhhcC-----cHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCc------
Q 006272 261 SLKFRVLDEADEMLRMG-----FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE------ 329 (652)
Q Consensus 261 ~~~~lViDEah~~l~~g-----f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~------ 329 (652)
++++|||||+|.+..+. +......++..... ..+++++|||+++.+..............+.+.+..
T Consensus 145 ~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~ 222 (357)
T TIGR03158 145 KFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFEC--RRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDN 222 (357)
T ss_pred CCCEEEEecccccCcccchhhhhhhHHHHHHHhhhc--CCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCC
Confidence 89999999999986433 22233344443332 469999999999987776665411111122222210
Q ss_pred ------c-----cccCCCceEEEccCCchhhhhhHHHH----HHhh--CCCCeEEEEecchhHHHHHHHhcCC------C
Q 006272 330 ------K-----MKASTNVRHIVLPCSSSARSQVIPDI----IRCY--SSGGRTIIFTETKESASQLADLLPG------A 386 (652)
Q Consensus 330 ------~-----~~~~~~~~~~~~~~~~~~~~~~l~~l----l~~~--~~~~~~iVF~~s~~~~~~l~~~l~~------~ 386 (652)
. ......+.+.+.. ....+...+..+ +..+ ..++++||||||+..++.++..|+. +
T Consensus 223 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~ 301 (357)
T TIGR03158 223 PELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDI 301 (357)
T ss_pred hhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceE
Confidence 0 0011245554444 222233323222 2222 2467999999999999999999972 4
Q ss_pred cccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcc
Q 006272 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451 (652)
Q Consensus 387 ~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~g 451 (652)
..+||.+++.+|.++. +..|||||++++||||++.+ +|| ++ |.++++|+||+||||
T Consensus 302 ~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 302 GRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 5789999999997653 68899999999999999987 666 45 899999999999997
No 72
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.5e-36 Score=304.34 Aligned_cols=331 Identities=25% Similarity=0.341 Sum_probs=260.6
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCC
Q 006272 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (652)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 184 (652)
...-.++++++++.+...|+..|++.+.|+|..++.. +++|.|++++++|+|||||..-++-+..+.....
T Consensus 191 ~~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~-------- 262 (830)
T COG1202 191 VERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK-------- 262 (830)
T ss_pred cccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCC--------
Confidence 4446788999999999999999999999999999966 7799999999999999999998888888876432
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHH----HhcCCCcEEEeCcHHHHHHHHhCCcCCC
Q 006272 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF----KLKKGIDVVIGTPGRIKDHIERGNIDLS 260 (652)
Q Consensus 185 ~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~----~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~ 260 (652)
..|+|+|..+||+|-+++|+.--..+++.+..-.|-..+..... .....+||||+|++-+-.+|..+ -++.
T Consensus 263 ----KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lg 337 (830)
T COG1202 263 ----KMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLG 337 (830)
T ss_pred ----eEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Cccc
Confidence 48999999999999999998666778888877777655443321 12335899999999998877776 5699
Q ss_pred CceEEecCcchhhhhcCcHHHHHHHHHhccCC-CCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceE
Q 006272 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDA-NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339 (652)
Q Consensus 261 ~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~-~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 339 (652)
++..|||||+|.+-+......+.-++..+... +..|+|.+|||+.+.- .++..+- ...+... . .+.+--+|
T Consensus 338 diGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~-elA~~l~---a~lV~y~--~--RPVplErH 409 (830)
T COG1202 338 DIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPE-ELAKKLG---AKLVLYD--E--RPVPLERH 409 (830)
T ss_pred ccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChH-HHHHHhC---CeeEeec--C--CCCChhHe
Confidence 99999999999887655555555555544332 2589999999997753 3444432 2222221 1 22233345
Q ss_pred EEccCCchhhhhhHHHHHHhh-------CCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCC
Q 006272 340 IVLPCSSSARSQVIPDIIRCY-------SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408 (652)
Q Consensus 340 ~~~~~~~~~~~~~l~~ll~~~-------~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g 408 (652)
+.+.-...+|..++..+.+.. ...+++|||++|+..|+.|+..|. .+.+||++|+..+|..+...|.++
T Consensus 410 lvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q 489 (830)
T COG1202 410 LVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQ 489 (830)
T ss_pred eeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcC
Confidence 666556788888888777643 235799999999999999999998 788999999999999999999999
Q ss_pred CceEEEEccccccCCCCCCccEEEE---cCC-CCCHHHHHHHhhhcccCCCcc
Q 006272 409 KFMTLVATNVAARGLDINDVQLIIQ---CEP-PRDVEAYIHRSGRTGRAGVEA 457 (652)
Q Consensus 409 ~~~vLvaT~~~~~Gldi~~v~~VI~---~~~-p~s~~~y~qr~GR~gR~g~~~ 457 (652)
.+.++|+|-+++.|+|+|.-.+|+. .+. .-|+..|.|+.|||||-+-..
T Consensus 490 ~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHd 542 (830)
T COG1202 490 ELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHD 542 (830)
T ss_pred CcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCccc
Confidence 9999999999999999997665542 222 348999999999999998543
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.6e-35 Score=321.36 Aligned_cols=318 Identities=17% Similarity=0.218 Sum_probs=215.3
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.|+ .|+++|...+..+..| .|+.++||+|||++|++|++.....+. .++||+|+++||.|++++
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~g~-------------~V~VVTpn~yLA~Rdae~ 130 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALTGK-------------GAMLVTTNDYLAKRDAEE 130 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhcCC-------------ceEEeCCCHHHHHHHHHH
Confidence 355 5666665555555444 799999999999999999876665432 489999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcc---hHHHHHHhcCCCcEEEeCcHHH-HHHHHh------CCcCCCCceEEecCcchhhhhc
Q 006272 207 FDVYGGAVGLTSCCLYGGAP---YHAQEFKLKKGIDVVIGTPGRI-KDHIER------GNIDLSSLKFRVLDEADEMLRM 276 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~---~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~------~~~~l~~~~~lViDEah~~l~~ 276 (652)
+..+...+++++.+++++.. ...+......+++|+++||++| .++|.. ....+..+.++|+||||.||-.
T Consensus 131 m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiD 210 (762)
T TIGR03714 131 MGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLD 210 (762)
T ss_pred HHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhc
Confidence 99999999999998877632 2333344446799999999999 555532 2345788999999999998621
Q ss_pred C----------------cHHHHHHHHHhccCC------CCceEEEE----------------------------------
Q 006272 277 G----------------FVEDVELILGKVEDA------NKVQTLLF---------------------------------- 300 (652)
Q Consensus 277 g----------------f~~~~~~i~~~~~~~------~~~q~l~~---------------------------------- 300 (652)
. ++..+..+...+... .+.+.+.+
T Consensus 211 eartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~ 290 (762)
T TIGR03714 211 SAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALR 290 (762)
T ss_pred cCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHH
Confidence 1 223333333333221 01112222
Q ss_pred ---------------------------------------------------------------------------cccCC
Q 006272 301 ---------------------------------------------------------------------------SATLP 305 (652)
Q Consensus 301 ---------------------------------------------------------------------------SAT~~ 305 (652)
|.|..
T Consensus 291 A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~ 370 (762)
T TIGR03714 291 AHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGK 370 (762)
T ss_pred HHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCh
Confidence 22221
Q ss_pred hHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHh-hCCCCeEEEEecchhHHHHHHHhcC
Q 006272 306 SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP 384 (652)
Q Consensus 306 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~iVF~~s~~~~~~l~~~l~ 384 (652)
.....+...|- ..+..++..++........ .+.+....|...+...+.. +..+.++||||+|+..++.++..|.
T Consensus 371 ~~~~Ef~~iY~----l~v~~IPt~kp~~r~d~~d-~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~ 445 (762)
T TIGR03714 371 VAEKEFIETYS----LSVVKIPTNKPIIRIDYPD-KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLL 445 (762)
T ss_pred hHHHHHHHHhC----CCEEEcCCCCCeeeeeCCC-eEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHH
Confidence 11111111000 0000111111111111110 1223345566666665543 4567899999999999999999997
Q ss_pred ----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCC---------CccEEEEcCCCCCHHHHHHHhhhcc
Q 006272 385 ----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN---------DVQLIIQCEPPRDVEAYIHRSGRTG 451 (652)
Q Consensus 385 ----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~---------~v~~VI~~~~p~s~~~y~qr~GR~g 451 (652)
.+..+||.+.+.++..+...|+.| .|+||||+++||+||+ ++.+|++|++|..... +||+||||
T Consensus 446 ~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtG 522 (762)
T TIGR03714 446 REGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSG 522 (762)
T ss_pred HCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhccc
Confidence 577899999999998888877777 7999999999999999 9999999999988766 99999999
Q ss_pred cCCCcccceeeccCCcc
Q 006272 452 RAGVEAAETITQVSDSV 468 (652)
Q Consensus 452 R~g~~~~~~i~~~~~~~ 468 (652)
|.|.+|.+..+...++.
T Consensus 523 RqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 523 RQGDPGSSQFFVSLEDD 539 (762)
T ss_pred CCCCceeEEEEEccchh
Confidence 99999887665544443
No 74
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4.4e-35 Score=333.07 Aligned_cols=295 Identities=21% Similarity=0.293 Sum_probs=206.3
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEec----cHHHHHHHHHHHHH-
Q 006272 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP----TRELAKQVHEDFDV- 209 (652)
Q Consensus 135 ~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P----treLa~q~~~~~~~- 209 (652)
+-.+.+..+..++.+|++|+||||||+ ++|.+-..... .....+++..| +++||.||++++..
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~----------g~~g~I~~TQPRRlAArsLA~RVA~El~~~ 145 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR----------GVKGLIGHTQPRRLAARTVANRIAEELETE 145 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC----------CCCCceeeCCCcHHHHHHHHHHHHHHHhhh
Confidence 445566777788889999999999999 57744222111 11113455567 46899999998874
Q ss_pred HhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcch-hhhhcCcHHHHHHHHHh
Q 006272 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD-EMLRMGFVEDVELILGK 288 (652)
Q Consensus 210 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah-~~l~~gf~~~~~~i~~~ 288 (652)
++...|+.+. ... .....++|+|+|||+|++++..+.+ |+++++||||||| ++++.+|... .+...
T Consensus 146 lG~~VGY~vr-------f~~---~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg--~Lk~l 212 (1294)
T PRK11131 146 LGGCVGYKVR-------FND---QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILG--YLKEL 212 (1294)
T ss_pred hcceeceeec-------Ccc---ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHH--HHHHh
Confidence 5555555432 111 1245689999999999999987655 9999999999999 5888887653 22233
Q ss_pred ccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchh---hhhhHHHHH---Hh--h
Q 006272 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA---RSQVIPDII---RC--Y 360 (652)
Q Consensus 289 ~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~ll---~~--~ 360 (652)
++..++.|+|+||||++. ..+...|. . ...+.+.+.. ..+.+.|..+.... +...+..++ .. .
T Consensus 213 L~~rpdlKvILmSATid~--e~fs~~F~-~-apvI~V~Gr~-----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~ 283 (1294)
T PRK11131 213 LPRRPDLKVIITSATIDP--ERFSRHFN-N-APIIEVSGRT-----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGR 283 (1294)
T ss_pred hhcCCCceEEEeeCCCCH--HHHHHHcC-C-CCEEEEcCcc-----ccceEEEeecccccchhhHHHHHHHHHHHHHHhc
Confidence 333336899999999975 34544443 3 3345554321 23555555543211 122222222 11 1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEE
Q 006272 361 SSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ 433 (652)
Q Consensus 361 ~~~~~~iVF~~s~~~~~~l~~~l~-------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~ 433 (652)
...+.+||||++..+++.+++.|. .+.++||+|++.+|..+++. .|..+||||||++++|||||+|++||+
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEE
Confidence 346889999999999999999986 25689999999999999986 478899999999999999999999999
Q ss_pred cCC---------------C---CCHHHHHHHhhhcccCCCcccceeeccCCc
Q 006272 434 CEP---------------P---RDVEAYIHRSGRTGRAGVEAAETITQVSDS 467 (652)
Q Consensus 434 ~~~---------------p---~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~ 467 (652)
+++ | .|.++|.||+|||||. ..|.++ .+++..
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~-rLyte~ 411 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICI-RLYSED 411 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEE-EeCCHH
Confidence 863 3 4668999999999999 466554 444433
No 75
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=5.2e-34 Score=327.65 Aligned_cols=309 Identities=24% Similarity=0.287 Sum_probs=224.0
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHH
Q 006272 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (652)
Q Consensus 128 g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 207 (652)
+..+++++|.+++..++.+ |+|+++|||+|||+++++++...+... +.++|||+||++|+.|+++.+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~------------~~~vLvl~Pt~~L~~Q~~~~~ 78 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKK------------GGKVLILAPTKPLVEQHAEFF 78 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhC------------CCeEEEEeCcHHHHHHHHHHH
Confidence 3457899999999988876 999999999999999999998877321 236999999999999999999
Q ss_pred HHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHH
Q 006272 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287 (652)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~ 287 (652)
+.+.......+..++|+.+... ...+....+|+|+||+.+...+..+.+.+.++++|||||||++........+...+.
T Consensus 79 ~~~~~~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~ 157 (773)
T PRK13766 79 RKFLNIPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH 157 (773)
T ss_pred HHHhCCCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH
Confidence 9886544557788888777654 334445689999999999988888888899999999999999875433333333333
Q ss_pred hccCCCCceEEEEcccCChHHH---HHHHHhcccCCeEEEEccCccc---------------------------------
Q 006272 288 KVEDANKVQTLLFSATLPSWVK---HISTKFLKSDKKTIDLVGNEKM--------------------------------- 331 (652)
Q Consensus 288 ~~~~~~~~q~l~~SAT~~~~~~---~~~~~~~~~~~~~i~~~~~~~~--------------------------------- 331 (652)
.... .+++++||||+..... .....+. ...+.+......
T Consensus 158 ~~~~--~~~il~lTaTP~~~~~~i~~~~~~L~---i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~ 232 (773)
T PRK13766 158 EDAK--NPLVLGLTASPGSDEEKIKEVCENLG---IEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEAL 232 (773)
T ss_pred hcCC--CCEEEEEEcCCCCCHHHHHHHHHhCC---ceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHH
Confidence 2222 5689999999642221 1111110 000000000000
Q ss_pred ----------ccC--CC--------------ceEEE--------------------------------------------
Q 006272 332 ----------KAS--TN--------------VRHIV-------------------------------------------- 341 (652)
Q Consensus 332 ----------~~~--~~--------------~~~~~-------------------------------------------- 341 (652)
... .. +....
T Consensus 233 ~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~ 312 (773)
T PRK13766 233 KDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLRE 312 (773)
T ss_pred HHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 000 00 00000
Q ss_pred ----------------------------ccCCchhhhhhHHHHHHhh---CCCCeEEEEecchhHHHHHHHhcC----CC
Q 006272 342 ----------------------------LPCSSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP----GA 386 (652)
Q Consensus 342 ----------------------------~~~~~~~~~~~l~~ll~~~---~~~~~~iVF~~s~~~~~~l~~~l~----~~ 386 (652)
.......|...|..++... ..+.++||||+++..|+.|+..|. .+
T Consensus 313 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~ 392 (773)
T PRK13766 313 EARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKA 392 (773)
T ss_pred hccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCce
Confidence 0001112334444455432 367899999999999999999995 45
Q ss_pred cccccc--------cchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCC
Q 006272 387 RALHGD--------IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455 (652)
Q Consensus 387 ~~lh~~--------~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~ 455 (652)
..+||. |++.+|..+++.|++|.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|.
T Consensus 393 ~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~ 469 (773)
T PRK13766 393 VRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE 469 (773)
T ss_pred EEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC
Confidence 566665 999999999999999999999999999999999999999999999999999999999999875
No 76
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=8.9e-35 Score=279.13 Aligned_cols=331 Identities=21% Similarity=0.299 Sum_probs=255.5
Q ss_pred CcccccCCCHHHHHHHHHC-CCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 109 NAVSRFRISVPLREKLKSK-GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
+.-++|+++.+..+.|+.. ..+.++|.|.++|.+.+.+.|+++..|||.||++||.+|++ +..+
T Consensus 71 wdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal--~adg------------- 135 (695)
T KOG0353|consen 71 WDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPAL--CADG------------- 135 (695)
T ss_pred cccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHH--hcCC-------------
Confidence 4456789999999888764 77889999999999999999999999999999999999987 3222
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHH---HHh---cCCCcEEEeCcHHHHHH---HHh--CC
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE---FKL---KKGIDVVIGTPGRIKDH---IER--GN 256 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~~---~~~~~Ilv~Tp~rl~~~---l~~--~~ 256 (652)
.+||+||...|+..+.-.++.++ +....+....+..... ..+ .....+++.||+.+... +.+ ..
T Consensus 136 -~alvi~plislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka 210 (695)
T KOG0353|consen 136 -FALVICPLISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKA 210 (695)
T ss_pred -ceEeechhHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHH
Confidence 48999999999998888888865 3333333333322211 112 23467999999988532 221 34
Q ss_pred cCCCCceEEecCcchhhhhcC--cHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccC
Q 006272 257 IDLSSLKFRVLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS 334 (652)
Q Consensus 257 ~~l~~~~~lViDEah~~l~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 334 (652)
+....+.+|.+||+|+..+|| |++++..+--.-++.+...++.++||.+..+...++..+..........+ ...
T Consensus 211 ~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~----fnr 286 (695)
T KOG0353|consen 211 LEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG----FNR 286 (695)
T ss_pred hhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc----cCC
Confidence 556678899999999999998 88888776554455557889999999999888888877743222222222 223
Q ss_pred CCceEEEcc--CCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCC
Q 006272 335 TNVRHIVLP--CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408 (652)
Q Consensus 335 ~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g 408 (652)
+++...+.. .+..+..+-+..++.....+...||||-+++.|+.++..|+ .+..||+.|.+.+|.-+-+.|..|
T Consensus 287 ~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~ 366 (695)
T KOG0353|consen 287 PNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG 366 (695)
T ss_pred CCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc
Confidence 344433332 23334444455555544467788999999999999999998 577899999999999999999999
Q ss_pred CceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHH-------------------------------------------
Q 006272 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH------------------------------------------- 445 (652)
Q Consensus 409 ~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~q------------------------------------------- 445 (652)
+++|+|||-++++|||-|+|++|||..+|.|.+.|.|
T Consensus 367 eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsek 446 (695)
T KOG0353|consen 367 EIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEK 446 (695)
T ss_pred ceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecch
Confidence 9999999999999999999999999999999999999
Q ss_pred HhhhcccCCCcccceeec
Q 006272 446 RSGRTGRAGVEAAETITQ 463 (652)
Q Consensus 446 r~GR~gR~g~~~~~~i~~ 463 (652)
.+||+||.+..+-+++++
T Consensus 447 esgragrd~~~a~cilyy 464 (695)
T KOG0353|consen 447 ESGRAGRDDMKADCILYY 464 (695)
T ss_pred hccccccCCCcccEEEEe
Confidence 789999999888776654
No 77
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-32 Score=298.89 Aligned_cols=322 Identities=18% Similarity=0.189 Sum_probs=218.2
Q ss_pred CCChHHHHHHHHHHhc-C--CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVLD-G--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~-~--~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
..|+|+|.+++..+.. + +..++++|||+|||++.+..+. .+.. ++|||||+.+|+.||.++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l~k---------------~tLILvps~~Lv~QW~~e 317 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TVKK---------------SCLVLCTSAVSVEQWKQQ 317 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-HhCC---------------CEEEEeCcHHHHHHHHHH
Confidence 4689999999988873 3 4789999999999998765443 3321 389999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHh--------CCcCCCCceEEecCcchhhhhcCc
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER--------GNIDLSSLKFRVLDEADEMLRMGF 278 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~--------~~~~l~~~~~lViDEah~~l~~gf 278 (652)
|..+.......+..++|+.... ......|+|+|+..+.....+ ..+.-..+.+||+||||++.
T Consensus 318 f~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp---- 388 (732)
T TIGR00603 318 FKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP---- 388 (732)
T ss_pred HHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----
Confidence 9998654455666666653221 123478999999877543221 11223467899999999985
Q ss_pred HHHHHHHHHhccCCCCceEEEEcccCChHHHH--HHHHhcccCCeEEEEccCc----ccccCCCceEEEc----------
Q 006272 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKH--ISTKFLKSDKKTIDLVGNE----KMKASTNVRHIVL---------- 342 (652)
Q Consensus 279 ~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~--~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~---------- 342 (652)
...+..++..+.. ...++||||+...... ....++ .+......-.+ ............+
T Consensus 389 A~~fr~il~~l~a---~~RLGLTATP~ReD~~~~~L~~Li--GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~y 463 (732)
T TIGR00603 389 AAMFRRVLTIVQA---HCKLGLTATLVREDDKITDLNFLI--GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREY 463 (732)
T ss_pred HHHHHHHHHhcCc---CcEEEEeecCcccCCchhhhhhhc--CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHH
Confidence 3445556666543 4689999997532211 111222 12111110000 0000001111111
Q ss_pred -----------cCCchhhhhhHHHHHHhh-CCCCeEEEEecchhHHHHHHHhcCCCcccccccchHHHHHHHhhhcCC-C
Q 006272 343 -----------PCSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSG-K 409 (652)
Q Consensus 343 -----------~~~~~~~~~~l~~ll~~~-~~~~~~iVF~~s~~~~~~l~~~l~~~~~lh~~~~~~~R~~~~~~f~~g-~ 409 (652)
......|...+..++..+ ..+.++||||++...+..++..| .+..+||.+++.+|..+++.|+++ .
T Consensus 464 l~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-~~~~I~G~ts~~ER~~il~~Fr~~~~ 542 (732)
T TIGR00603 464 LRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-GKPFIYGPTSQQERMQILQNFQHNPK 542 (732)
T ss_pred HHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-CCceEECCCCHHHHHHHHHHHHhCCC
Confidence 112234555555666554 26689999999999999999999 477899999999999999999875 8
Q ss_pred ceEEEEccccccCCCCCCccEEEEcCCC-CCHHHHHHHhhhcccCCCccc------ceeeccCCcchHH-HHHHHHHHHh
Q 006272 410 FMTLVATNVAARGLDINDVQLIIQCEPP-RDVEAYIHRSGRTGRAGVEAA------ETITQVSDSVIPA-FKSAAEELLN 481 (652)
Q Consensus 410 ~~vLvaT~~~~~Gldi~~v~~VI~~~~p-~s~~~y~qr~GR~gR~g~~~~------~~i~~~~~~~~~~-~~~~~~~~~~ 481 (652)
+++||+|+++.+|||+|++++||+++.| .|...|+||+||++|.+..+. .++.+++.+..+. |...-+.+|.
T Consensus 543 i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 543 VNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred ccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHH
Confidence 8999999999999999999999999998 599999999999999985533 2345555554433 3333333343
Q ss_pred c
Q 006272 482 N 482 (652)
Q Consensus 482 ~ 482 (652)
+
T Consensus 623 ~ 623 (732)
T TIGR00603 623 D 623 (732)
T ss_pred H
Confidence 3
No 78
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=292.20 Aligned_cols=311 Identities=21% Similarity=0.264 Sum_probs=237.8
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
..| .|-.+|++||-++..|..|+|.|+|.+|||+++-.+|.-...+ ..|+++.+|.++|.+|-++.
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h-------------~TR~iYTSPIKALSNQKfRD 359 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH-------------MTRTIYTSPIKALSNQKFRD 359 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh-------------ccceEecchhhhhccchHHH
Confidence 444 6889999999999999999999999999999876655433322 33699999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHH
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~ 286 (652)
|+......+ .++|+..++ ..+.++|+|.+.|..+|.++.--++++.+|||||+|.+.|......|+.++
T Consensus 360 Fk~tF~Dvg----LlTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEVi 428 (1248)
T KOG0947|consen 360 FKETFGDVG----LLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVI 428 (1248)
T ss_pred HHHhccccc----eeecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeee
Confidence 998765444 778876554 448999999999999999987668999999999999999988889999999
Q ss_pred HhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCc--------------------
Q 006272 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS-------------------- 346 (652)
Q Consensus 287 ~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------------------- 346 (652)
-.+|. ++++|++|||+|+.. .++...-+.....|.++...+ .+..+.|+++.-.+
T Consensus 429 IMlP~--HV~~IlLSATVPN~~-EFA~WIGRtK~K~IyViST~k--RPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~ 503 (1248)
T KOG0947|consen 429 IMLPR--HVNFILLSATVPNTL-EFADWIGRTKQKTIYVISTSK--RPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAK 503 (1248)
T ss_pred eeccc--cceEEEEeccCCChH-HHHHHhhhccCceEEEEecCC--CccceEEEEEeccceehhhcccchhhhhcchhhh
Confidence 99988 999999999999865 344444433444444443321 11122222211000
Q ss_pred -------------------------------------------hhhh--hhHHHHHHhhC--CCCeEEEEecchhHHHHH
Q 006272 347 -------------------------------------------SARS--QVIPDIIRCYS--SGGRTIIFTETKESASQL 379 (652)
Q Consensus 347 -------------------------------------------~~~~--~~l~~ll~~~~--~~~~~iVF~~s~~~~~~l 379 (652)
..+. ....+++..+. .--|+||||.+++.|++.
T Consensus 504 ~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~ 583 (1248)
T KOG0947|consen 504 DSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEY 583 (1248)
T ss_pred hhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHH
Confidence 0011 12333333321 234899999999999999
Q ss_pred HHhcC-------------------------------------------CCcccccccchHHHHHHHhhhcCCCceEEEEc
Q 006272 380 ADLLP-------------------------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (652)
Q Consensus 380 ~~~l~-------------------------------------------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT 416 (652)
++.|. +++++||++-+--++-+.-.|..|-++||+||
T Consensus 584 a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFAT 663 (1248)
T KOG0947|consen 584 ADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFAT 663 (1248)
T ss_pred HHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeeh
Confidence 98883 57889999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEcCCC---------CCHHHHHHHhhhcccCCCcccceeeccCCcc
Q 006272 417 NVAARGLDINDVQLIIQCEPP---------RDVEAYIHRSGRTGRAGVEAAETITQVSDSV 468 (652)
Q Consensus 417 ~~~~~Gldi~~v~~VI~~~~p---------~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~ 468 (652)
.++|+|||+|.-.+|+. .+- -.+-.|+|++|||||.|-+....++.+..+.
T Consensus 664 ETFAMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 664 ETFAMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hhhhhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 99999999998777764 221 2678999999999999988777666665555
No 79
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4e-32 Score=288.84 Aligned_cols=312 Identities=24% Similarity=0.290 Sum_probs=218.3
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHH
Q 006272 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (652)
Q Consensus 128 g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 207 (652)
....++.+|.+.+..+| ++++|+++|||+|||++++..+++++.+.+. .++|+++||+-|+.|+...+
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-----------~KiVF~aP~~pLv~QQ~a~~ 126 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-----------GKVVFLAPTRPLVNQQIACF 126 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-----------ceEEEeeCCchHHHHHHHHH
Confidence 34478999999998888 9999999999999999999999999887543 46999999999999999888
Q ss_pred HHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcC-CCCceEEecCcchhhhhcCcHHHHH-HH
Q 006272 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID-LSSLKFRVLDEADEMLRMGFVEDVE-LI 285 (652)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~-l~~~~~lViDEah~~l~~gf~~~~~-~i 285 (652)
..++.. ..+....|+.........+....+|+|+||..|.+.|..+... |+.+.++||||||+-....-+..+. .+
T Consensus 127 ~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~ 204 (746)
T KOG0354|consen 127 SIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREY 204 (746)
T ss_pred hhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHH
Confidence 887744 5566666664444444455666899999999999998876543 5999999999999976554344443 44
Q ss_pred HHhccCCCCceEEEEcccCChHHHHHHHHhcccC----------------------CeEEE-------------------
Q 006272 286 LGKVEDANKVQTLLFSATLPSWVKHISTKFLKSD----------------------KKTID------------------- 324 (652)
Q Consensus 286 ~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~----------------------~~~i~------------------- 324 (652)
+..-.. ..|+|++|||+............+.. ...++
T Consensus 205 l~~k~~--~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~ 282 (746)
T KOG0354|consen 205 LDLKNQ--GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPL 282 (746)
T ss_pred HHhhhc--cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHH
Confidence 444333 34999999997644333221111000 00000
Q ss_pred -----------EccCc----------ccccCCCc---eE--EE----------------cc--------------C----
Q 006272 325 -----------LVGNE----------KMKASTNV---RH--IV----------------LP--------------C---- 344 (652)
Q Consensus 325 -----------~~~~~----------~~~~~~~~---~~--~~----------------~~--------------~---- 344 (652)
..... ......+. .+ ++ +. +
T Consensus 283 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k 362 (746)
T KOG0354|consen 283 LQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKK 362 (746)
T ss_pred HHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhH
Confidence 00000 00000000 00 00 00 0
Q ss_pred -----------------------------CchhhhhhHHHHHHhh---CCCCeEEEEecchhHHHHHHHhcCC-------
Q 006272 345 -----------------------------SSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLPG------- 385 (652)
Q Consensus 345 -----------------------------~~~~~~~~l~~ll~~~---~~~~~~iVF~~s~~~~~~l~~~l~~------- 385 (652)
....++..+..++... .+..++||||.++..|..|..+|..
T Consensus 363 ~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir 442 (746)
T KOG0354|consen 363 YLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIK 442 (746)
T ss_pred HHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccc
Confidence 0011222222222211 2456999999999999999988861
Q ss_pred Cc--------ccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCc
Q 006272 386 AR--------ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456 (652)
Q Consensus 386 ~~--------~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~ 456 (652)
.. .-..+|+|.++.++++.|++|.++|||||++++.||||+.|++||.||...|+...+||.|| ||+-.-
T Consensus 443 ~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~ns 520 (746)
T KOG0354|consen 443 AEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRARNS 520 (746)
T ss_pred cceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccccCC
Confidence 11 12358999999999999999999999999999999999999999999999999999999999 998643
No 80
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.2e-33 Score=290.53 Aligned_cols=304 Identities=20% Similarity=0.245 Sum_probs=238.4
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
++-|+|..+|..+-.+..|+++|.|.+|||.++-.+|...|...+ |+|+.+|.++|.+|-|++|..-
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ-------------RVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ-------------RVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC-------------eEEeeChhhhhcchhHHHHHHH
Confidence 577999999999999999999999999999999988888887654 6999999999999999999866
Q ss_pred hcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhcc
Q 006272 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (652)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~ 290 (652)
+.. |...+|+..++ ..+..+|+|.+.|..++.++.--+..+.|||+||+|.|-|....-.|+..+-.+|
T Consensus 196 F~D----VGLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP 264 (1041)
T KOG0948|consen 196 FKD----VGLMTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLP 264 (1041)
T ss_pred hcc----cceeecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEecc
Confidence 544 44566766544 4488999999999999999988899999999999999998887778888888888
Q ss_pred CCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCc---------h-----hhhh-----
Q 006272 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS---------S-----ARSQ----- 351 (652)
Q Consensus 291 ~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~-----~~~~----- 351 (652)
+ +++.+++|||+|+.. +++.+...-...+.+++..+ ..++.++|+.++... . +.+.
T Consensus 265 ~--~vr~VFLSATiPNA~-qFAeWI~~ihkQPcHVVYTd--yRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~ 339 (1041)
T KOG0948|consen 265 D--NVRFVFLSATIPNAR-QFAEWICHIHKQPCHVVYTD--YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSV 339 (1041)
T ss_pred c--cceEEEEeccCCCHH-HHHHHHHHHhcCCceEEeec--CCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHH
Confidence 7 899999999999854 55555544344444444333 445567777554321 0 0010
Q ss_pred ------------------------------hHHHHHHhh--CCCCeEEEEecchhHHHHHHHhcC---------------
Q 006272 352 ------------------------------VIPDIIRCY--SSGGRTIIFTETKESASQLADLLP--------------- 384 (652)
Q Consensus 352 ------------------------------~l~~ll~~~--~~~~~~iVF~~s~~~~~~l~~~l~--------------- 384 (652)
-+..++... ....++|||+.++++|+.++..+.
T Consensus 340 l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~ 419 (1041)
T KOG0948|consen 340 LRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVET 419 (1041)
T ss_pred hhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHH
Confidence 011111110 123589999999999999997773
Q ss_pred ----------------------------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEE---
Q 006272 385 ----------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ--- 433 (652)
Q Consensus 385 ----------------------------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~--- 433 (652)
++.++|++|-+--++.+.-.|..|-++||+||.+++.|||+|.-++|+.
T Consensus 420 iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~r 499 (1041)
T KOG0948|consen 420 IFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVR 499 (1041)
T ss_pred HHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeecc
Confidence 5788999999999999999999999999999999999999998777774
Q ss_pred -cCCC----CCHHHHHHHhhhcccCCCcccceeec
Q 006272 434 -CEPP----RDVEAYIHRSGRTGRAGVEAAETITQ 463 (652)
Q Consensus 434 -~~~p----~s~~~y~qr~GR~gR~g~~~~~~i~~ 463 (652)
||-- -|.-.|+|++|||||.|.+...++++
T Consensus 500 KfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIl 534 (1041)
T KOG0948|consen 500 KFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVIL 534 (1041)
T ss_pred ccCCcceeeecccceEEecccccccCCCCCceEEE
Confidence 3321 26789999999999999775554443
No 81
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=6.6e-32 Score=289.74 Aligned_cols=342 Identities=17% Similarity=0.276 Sum_probs=246.4
Q ss_pred HHCCCCCChHHHHHHHHHHh-cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHH
Q 006272 125 KSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (652)
Q Consensus 125 ~~~g~~~~~~~Q~~~i~~~l-~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~ 203 (652)
.-++|..+..+|..++|.+. ++.|+|+|||||||||-.|+|.||+.+..... ..........+++|+|+++||..+
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~---~~~i~k~~fKiVYIaPmKALa~Em 180 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEE---QGDIAKDDFKIVYIAPMKALAAEM 180 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhcc---ccccccCCceEEEEechHHHHHHH
Confidence 34678899999999999988 56799999999999999999999999886221 111224567899999999999999
Q ss_pred HHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhC---CcCCCCceEEecCcchhhhhcCcHH
Q 006272 204 HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG---NIDLSSLKFRVLDEADEMLRMGFVE 280 (652)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~---~~~l~~~~~lViDEah~~l~~gf~~ 280 (652)
++.|.+-....+++|.-++|+....... + ..++|||+||+.+--.-++. .-.++.+++|||||+|.+ ....++
T Consensus 181 ~~~~~kkl~~~gi~v~ELTGD~ql~~te--i-~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RGp 256 (1230)
T KOG0952|consen 181 VDKFSKKLAPLGISVRELTGDTQLTKTE--I-ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRGP 256 (1230)
T ss_pred HHHHhhhcccccceEEEecCcchhhHHH--H-HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhh-cCcccc
Confidence 9999877777899999999998877554 2 34899999999873222221 123677999999999965 444567
Q ss_pred HHHHHHHhcc-----CCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCch---hhh--
Q 006272 281 DVELILGKVE-----DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS---ARS-- 350 (652)
Q Consensus 281 ~~~~i~~~~~-----~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~-- 350 (652)
.++.|+..+. ....++++.+|||+|+.. ....|++-+ ....+...+....+..+.+.++-+... ...
T Consensus 257 vlEtiVaRtlr~vessqs~IRivgLSATlPN~e--DvA~fL~vn-~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~ 333 (1230)
T KOG0952|consen 257 VLETIVARTLRLVESSQSMIRIVGLSATLPNYE--DVARFLRVN-PYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKN 333 (1230)
T ss_pred hHHHHHHHHHHHHHhhhhheEEEEeeccCCCHH--HHHHHhcCC-CccceeeecccccccceeeeEEeeecccchhhhhh
Confidence 7777766553 123689999999999843 345555443 111121222223334455544433332 111
Q ss_pred ---hhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC---------------------------CCcccccccchHHHHH
Q 006272 351 ---QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---------------------------GARALHGDIQQSQREV 400 (652)
Q Consensus 351 ---~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~---------------------------~~~~lh~~~~~~~R~~ 400 (652)
-....++..+..+.+++|||.++..+.+.+..|. ....+|++|.-.+|..
T Consensus 334 ~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l 413 (1230)
T KOG0952|consen 334 IDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQL 413 (1230)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHH
Confidence 1233444555678999999999998888887763 4678999999999999
Q ss_pred HHhhhcCCCceEEEEccccccCCCCCCccEEE----EcCCCC------CHHHHHHHhhhcccCCCc-ccceeeccCCcch
Q 006272 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLII----QCEPPR------DVEAYIHRSGRTGRAGVE-AAETITQVSDSVI 469 (652)
Q Consensus 401 ~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI----~~~~p~------s~~~y~qr~GR~gR~g~~-~~~~i~~~~~~~~ 469 (652)
+...|..|.++||+||..+++|+|+|+--++| .||... ..-+-+|..|||||-.-+ .++.++....+.+
T Consensus 414 ~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl 493 (1230)
T KOG0952|consen 414 VEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKL 493 (1230)
T ss_pred HHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHH
Confidence 99999999999999999999999999744444 244433 567889999999998632 3444555666666
Q ss_pred HHHHHHH
Q 006272 470 PAFKSAA 476 (652)
Q Consensus 470 ~~~~~~~ 476 (652)
..|...+
T Consensus 494 ~~Y~sLl 500 (1230)
T KOG0952|consen 494 DHYESLL 500 (1230)
T ss_pred HHHHHHH
Confidence 6666443
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=6.6e-31 Score=292.38 Aligned_cols=309 Identities=21% Similarity=0.245 Sum_probs=210.6
Q ss_pred CChHHHHHHHHHHhcC---CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDG---SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~---~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 207 (652)
.||+.|+++++.++.+ +++++.++||||||.+|+.++.+.+..+ .++|||+||++|+.|+++.|
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-------------~~vLvLvPt~~L~~Q~~~~l 210 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-------------KQALVLVPEIALTPQMLARF 210 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC-------------CeEEEEeCcHHHHHHHHHHH
Confidence 6899999999999874 7899999999999999999888777543 25999999999999999999
Q ss_pred HHHhcCCCceEEEEeCCcchHHHHHH----hcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC---c--
Q 006272 208 DVYGGAVGLTSCCLYGGAPYHAQEFK----LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG---F-- 278 (652)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~~----~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g---f-- 278 (652)
+... +..+..++|+.+....... ....++|+|+|++.+. ..+.++.+|||||+|...-.. .
T Consensus 211 ~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y 280 (679)
T PRK05580 211 RARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRY 280 (679)
T ss_pred HHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCC
Confidence 8753 5678889998876544332 2356899999998874 347889999999999765322 1
Q ss_pred -HHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccC--Cc---hhh-hh
Q 006272 279 -VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC--SS---SAR-SQ 351 (652)
Q Consensus 279 -~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~---~~~-~~ 351 (652)
..++..+.... .+.+++++|||++......+.. .....+.+...-.....+.+....+.. .. ... ..
T Consensus 281 ~~r~va~~ra~~---~~~~~il~SATps~~s~~~~~~---g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~ 354 (679)
T PRK05580 281 HARDLAVVRAKL---ENIPVVLGSATPSLESLANAQQ---GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPP 354 (679)
T ss_pred cHHHHHHHHhhc---cCCCEEEEcCCCCHHHHHHHhc---cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHH
Confidence 12332222222 2679999999977554433321 122223222111111111221111100 00 001 12
Q ss_pred hHHHHHHhhCCCCeEEEEecchh---------------------------------------------------------
Q 006272 352 VIPDIIRCYSSGGRTIIFTETKE--------------------------------------------------------- 374 (652)
Q Consensus 352 ~l~~ll~~~~~~~~~iVF~~s~~--------------------------------------------------------- 374 (652)
++..+.+.+..+.++|||+|++.
T Consensus 355 l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~ 434 (679)
T PRK05580 355 LLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVP 434 (679)
T ss_pred HHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEE
Confidence 23333344556678999988532
Q ss_pred ---HHHHHHHhcC------CCcccccccch--HHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEc--CCCC---
Q 006272 375 ---SASQLADLLP------GARALHGDIQQ--SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQC--EPPR--- 438 (652)
Q Consensus 375 ---~~~~l~~~l~------~~~~lh~~~~~--~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~--~~p~--- 438 (652)
.++++++.|. .+..+|+++.+ .+++.+++.|++|+.+|||+|+++++|+|+|+|++|+.+ |.+.
T Consensus 435 ~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~p 514 (679)
T PRK05580 435 VGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSP 514 (679)
T ss_pred eeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCC
Confidence 1233333332 46678999874 578999999999999999999999999999999999654 4443
Q ss_pred -------CHHHHHHHhhhcccCCCcccceeeccCCcc
Q 006272 439 -------DVEAYIHRSGRTGRAGVEAAETITQVSDSV 468 (652)
Q Consensus 439 -------s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~ 468 (652)
....|+|++||+||.+..+..+|...+++.
T Consensus 515 dfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~ 551 (679)
T PRK05580 515 DFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEH 551 (679)
T ss_pred ccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCC
Confidence 236799999999999988877766655543
No 83
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.98 E-value=3.6e-31 Score=302.53 Aligned_cols=295 Identities=19% Similarity=0.235 Sum_probs=202.9
Q ss_pred HHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCc
Q 006272 137 AMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGL 216 (652)
Q Consensus 137 ~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~ 216 (652)
.+.+..+..++.+|++|+||||||+ ++|.+-.-.. . .....++++.|.|--|..++..+.... +.
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~-~---------~~~~~I~~tQPRRlAA~svA~RvA~el---g~ 137 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELG-R---------GSHGLIGHTQPRRLAARTVAQRIAEEL---GT 137 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC-C---------CCCceEecCCccHHHHHHHHHHHHHHh---CC
Confidence 3556667677889999999999999 5565432211 1 112257778899887777776654332 22
Q ss_pred eEEEEeCC-cchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcch-hhhhcCcHHH-HHHHHHhccCCC
Q 006272 217 TSCCLYGG-APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD-EMLRMGFVED-VELILGKVEDAN 293 (652)
Q Consensus 217 ~~~~~~gg-~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah-~~l~~gf~~~-~~~i~~~~~~~~ 293 (652)
.+...+|. ..... .....+.|+|+|||+|+.++..+.+ |+++++||||||| ++++.+|.-. +..++...+
T Consensus 138 ~lG~~VGY~vR~~~---~~s~~T~I~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rp--- 210 (1283)
T TIGR01967 138 PLGEKVGYKVRFHD---QVSSNTLVKLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRP--- 210 (1283)
T ss_pred CcceEEeeEEcCCc---ccCCCceeeeccccHHHHHhhhCcc-cccCcEEEEcCcchhhccchhHHHHHHHHHhhCC---
Confidence 23223332 11221 1244689999999999999987654 8999999999999 5888887654 555554443
Q ss_pred CceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCc------hhhhhhHHHHHHhh--CCCCe
Q 006272 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS------SARSQVIPDIIRCY--SSGGR 365 (652)
Q Consensus 294 ~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~ll~~~--~~~~~ 365 (652)
..|+|+||||++. ..+...|. +...|.+.+.. ..+...|..... .+....+...+... ...+.
T Consensus 211 dLKlIlmSATld~--~~fa~~F~--~apvI~V~Gr~-----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~Gd 281 (1283)
T TIGR01967 211 DLKIIITSATIDP--ERFSRHFN--NAPIIEVSGRT-----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGD 281 (1283)
T ss_pred CCeEEEEeCCcCH--HHHHHHhc--CCCEEEECCCc-----ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCC
Confidence 5799999999974 34444443 23445544321 223444443321 12223333333221 24589
Q ss_pred EEEEecchhHHHHHHHhcC-------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCC-
Q 006272 366 TIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP- 437 (652)
Q Consensus 366 ~iVF~~s~~~~~~l~~~l~-------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p- 437 (652)
+|||+++..+++.+++.|. .+.++||.|++.+|.+++..+ +..+|||||+++++|||||+|++||+++++
T Consensus 282 ILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r 359 (1283)
T TIGR01967 282 ILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTAR 359 (1283)
T ss_pred EEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcc
Confidence 9999999999999999886 256899999999999997765 346999999999999999999999999854
Q ss_pred -----------------CCHHHHHHHhhhcccCCCcccceeeccCC
Q 006272 438 -----------------RDVEAYIHRSGRTGRAGVEAAETITQVSD 466 (652)
Q Consensus 438 -----------------~s~~~y~qr~GR~gR~g~~~~~~i~~~~~ 466 (652)
.|.++|.||+|||||.+ .|.++ .+++.
T Consensus 360 ~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cy-RLyte 403 (1283)
T TIGR01967 360 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICI-RLYSE 403 (1283)
T ss_pred ccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEE-EecCH
Confidence 36789999999999998 65554 44443
No 84
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=3.4e-30 Score=247.91 Aligned_cols=197 Identities=44% Similarity=0.685 Sum_probs=180.0
Q ss_pred ccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeE
Q 006272 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV 190 (652)
Q Consensus 111 ~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~ 190 (652)
|+++++++.+.+.|.+.|++.|+++|.++++.+++++|+++++|||+|||++|++|+++.+..... ..++++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~--------~~~~~v 72 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK--------KDGPQA 72 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc--------cCCceE
Confidence 678999999999999999999999999999999999999999999999999999999999876421 235689
Q ss_pred EEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcc
Q 006272 191 LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270 (652)
Q Consensus 191 lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEa 270 (652)
||++||++|+.|+...++.+....++.+..++|+.........+..+++|+|+||++|.+++.+..+.+.+++++|+||+
T Consensus 73 iii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~ 152 (203)
T cd00268 73 LILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152 (203)
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeCh
Confidence 99999999999999999999887889999999999887777777778999999999999999888888999999999999
Q ss_pred hhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcc
Q 006272 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLK 317 (652)
Q Consensus 271 h~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~ 317 (652)
|.+.+.+|...+..++..++. .+|++++|||+++.+..+...++.
T Consensus 153 h~~~~~~~~~~~~~~~~~l~~--~~~~~~~SAT~~~~~~~~~~~~~~ 197 (203)
T cd00268 153 DRMLDMGFEDQIREILKLLPK--DRQTLLFSATMPKEVRDLARKFLR 197 (203)
T ss_pred HHhhccChHHHHHHHHHhCCc--ccEEEEEeccCCHHHHHHHHHHCC
Confidence 999988999999999999876 789999999999999988888874
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=9.1e-30 Score=284.76 Aligned_cols=311 Identities=20% Similarity=0.199 Sum_probs=206.6
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH
Q 006272 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (652)
Q Consensus 129 ~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 208 (652)
...|+|+|+.+........-+|+.||||+|||.++++.+...+..+. ..+++|.+||+++++|+++++.
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~-----------~~gi~~aLPT~Atan~m~~Rl~ 352 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL-----------ADSIIFALPTQATANAMLSRLE 352 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-----------CCeEEEECcHHHHHHHHHHHHH
Confidence 34799999988655445667999999999999998776654443221 2359999999999999999987
Q ss_pred HHhcC--CCceEEEEeCCcchHHHH---------------------HHhc---C---CCcEEEeCcHHHHHHHHhC-CcC
Q 006272 209 VYGGA--VGLTSCCLYGGAPYHAQE---------------------FKLK---K---GIDVVIGTPGRIKDHIERG-NID 258 (652)
Q Consensus 209 ~~~~~--~~~~~~~~~gg~~~~~~~---------------------~~~~---~---~~~Ilv~Tp~rl~~~l~~~-~~~ 258 (652)
.+... ....+..++|........ ..+. + -.+|+|||...++..+... ...
T Consensus 353 ~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~ 432 (878)
T PRK09694 353 ALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRF 432 (878)
T ss_pred HHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHH
Confidence 64321 134566666665432110 1111 1 1689999999987554332 111
Q ss_pred CCC----ceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccC--------CeEEEEc
Q 006272 259 LSS----LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSD--------KKTIDLV 326 (652)
Q Consensus 259 l~~----~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~--------~~~i~~~ 326 (652)
+.. -++|||||+|.+ +......+..++..+... ...+|+||||+|..........+... ...+...
T Consensus 433 lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~-g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~ 510 (878)
T PRK09694 433 IRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA-GGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWR 510 (878)
T ss_pred HHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccc
Confidence 222 258999999977 444455666666665443 46799999999987765433321111 0111100
Q ss_pred cCc---cc--ccC---CCceE-EEc---cCCc-hhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC-------CC
Q 006272 327 GNE---KM--KAS---TNVRH-IVL---PCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-------GA 386 (652)
Q Consensus 327 ~~~---~~--~~~---~~~~~-~~~---~~~~-~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~-------~~ 386 (652)
... .. ... ....+ +.+ .... .....++..++.....++++||||||++.|+.+++.|+ .+
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v 590 (878)
T PRK09694 511 GVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDI 590 (878)
T ss_pred ccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceE
Confidence 000 00 000 00001 111 0010 11223455566555577899999999999999999886 36
Q ss_pred cccccccchHHH----HHHHhhh-cCCC---ceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCC
Q 006272 387 RALHGDIQQSQR----EVTLAGF-RSGK---FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455 (652)
Q Consensus 387 ~~lh~~~~~~~R----~~~~~~f-~~g~---~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~ 455 (652)
..+||.+.+.+| .++++.| ++++ ..|||||+++++|||| +++++|....| .+.|+||+||++|.+.
T Consensus 591 ~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 591 DLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 789999999999 4577888 6665 4799999999999999 68999999888 7899999999999986
No 86
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.6e-29 Score=276.50 Aligned_cols=324 Identities=22% Similarity=0.311 Sum_probs=222.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.|. .|+++|...--.+..|+ |+.++||+|||++|.+|++..+..+. .++||+||++||.|.+++
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~-------------~V~VvTpn~yLA~qd~e~ 142 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGR-------------GVHIVTVNDYLAKRDSQW 142 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCC-------------CEEEEcCCHHHHHHHHHH
Confidence 354 67888866555555554 89999999999999999997776532 389999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHH-HHHHHhC-CcCC-----CCceEEecCcchhhhh----
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG-NIDL-----SSLKFRVLDEADEMLR---- 275 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-~~~l-----~~~~~lViDEah~~l~---- 275 (652)
+..+...+++++.+++|+.+...+...+ .++|+|+||++| .++|..+ .+++ ..+.++||||||.||-
T Consensus 143 m~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeAr 220 (896)
T PRK13104 143 MKPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEAR 220 (896)
T ss_pred HHHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccC
Confidence 9999999999999999998877665554 589999999999 9998776 3444 5899999999999871
Q ss_pred -----------c-CcHHHHHHHHHhccCC------------CCceEEEEccc--------------CC------------
Q 006272 276 -----------M-GFVEDVELILGKVEDA------------NKVQTLLFSAT--------------LP------------ 305 (652)
Q Consensus 276 -----------~-gf~~~~~~i~~~~~~~------------~~~q~l~~SAT--------------~~------------ 305 (652)
. .++..+..+...+... .+.+.+.||-. ++
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~ 300 (896)
T PRK13104 221 TPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIM 300 (896)
T ss_pred CceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhh
Confidence 0 1233333344433221 01122333222 00
Q ss_pred --hHHHHHH--HHhcccCCeEEE------EccCcc---------------------------------------------
Q 006272 306 --SWVKHIS--TKFLKSDKKTID------LVGNEK--------------------------------------------- 330 (652)
Q Consensus 306 --~~~~~~~--~~~~~~~~~~i~------~~~~~~--------------------------------------------- 330 (652)
..+.... ..++..+...|- ++....
T Consensus 301 ~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~ 380 (896)
T PRK13104 301 LMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYN 380 (896)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcc
Confidence 0011100 111212211111 110000
Q ss_pred ---------------cccCCCceEEEc---------------cCCchhhhh-hHHHHHHhhCCCCeEEEEecchhHHHHH
Q 006272 331 ---------------MKASTNVRHIVL---------------PCSSSARSQ-VIPDIIRCYSSGGRTIIFTETKESASQL 379 (652)
Q Consensus 331 ---------------~~~~~~~~~~~~---------------~~~~~~~~~-~l~~ll~~~~~~~~~iVF~~s~~~~~~l 379 (652)
.....++.-..+ ......|.. ++..+...+..+.|+||||+|++.++.|
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~l 460 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFL 460 (896)
T ss_pred hhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHH
Confidence 000000000111 112233444 3444555667889999999999999999
Q ss_pred HHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCC----------------------------
Q 006272 380 ADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND---------------------------- 427 (652)
Q Consensus 380 ~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~---------------------------- 427 (652)
+.+|. ....||+.+.+.++..+.+.|+.|. |+|||++|+||+||.=
T Consensus 461 s~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (896)
T PRK13104 461 SQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQ 538 (896)
T ss_pred HHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhh
Confidence 99997 6778999999999999999999994 9999999999999961
Q ss_pred -----c-----cEEEEcCCCCCHHHHHHHhhhcccCCCcccceeec-cCCcchH
Q 006272 428 -----V-----QLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQ-VSDSVIP 470 (652)
Q Consensus 428 -----v-----~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~-~~~~~~~ 470 (652)
| =|||--..+.|..-=-|-.||+||-|.+|...++. .+++.+.
T Consensus 539 ~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~~ 592 (896)
T PRK13104 539 KRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMR 592 (896)
T ss_pred hhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHH
Confidence 1 27888888999999999999999999998765544 4444443
No 87
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=1e-29 Score=280.97 Aligned_cols=315 Identities=19% Similarity=0.265 Sum_probs=236.8
Q ss_pred HHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHH
Q 006272 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (652)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~ 203 (652)
....+| .|-++|++++..+..+..|+++||||+|||++.-.++...+.+++ ++++++|.++|.+|.
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q-------------rviYTsPIKALsNQK 178 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-------------RVIYTSPIKALSNQK 178 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-------------ceEeccchhhhhhhH
Confidence 345677 589999999999999999999999999999998888888887654 499999999999999
Q ss_pred HHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHH
Q 006272 204 HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (652)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~ 283 (652)
+++|........-.+..++|+..++ ..+.|+|+|.+.|.+++.++...+..+.+||+||+|+|.|......|+
T Consensus 179 yrdl~~~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWE 251 (1041)
T COG4581 179 YRDLLAKFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWE 251 (1041)
T ss_pred HHHHHHHhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHH
Confidence 9999765433323356677776554 458999999999999999998889999999999999999999999999
Q ss_pred HHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccC-------Cchhh------h
Q 006272 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC-------SSSAR------S 350 (652)
Q Consensus 284 ~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~------~ 350 (652)
.++-.+|. .+++++||||+|+..+ +...+-......+.++..+ ..+..+.|+++.- ....+ .
T Consensus 252 E~Ii~lP~--~v~~v~LSATv~N~~E-F~~Wi~~~~~~~~~vv~t~--~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~ 326 (1041)
T COG4581 252 EVIILLPD--HVRFVFLSATVPNAEE-FAEWIQRVHSQPIHVVSTE--HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFP 326 (1041)
T ss_pred HHHHhcCC--CCcEEEEeCCCCCHHH-HHHHHHhccCCCeEEEeec--CCCCCeEEEEecCCceeeeecccccchhhcch
Confidence 99999988 8899999999998643 3333322223333333222 1222333333221 00000 0
Q ss_pred hhHH--------------------------------------HHHHhh--CCCCeEEEEecchhHHHHHHHhcC------
Q 006272 351 QVIP--------------------------------------DIIRCY--SSGGRTIIFTETKESASQLADLLP------ 384 (652)
Q Consensus 351 ~~l~--------------------------------------~ll~~~--~~~~~~iVF~~s~~~~~~l~~~l~------ 384 (652)
.... .++..+ ...-++|+|+-++..|+.++..+.
T Consensus 327 ~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~ 406 (1041)
T COG4581 327 SANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVL 406 (1041)
T ss_pred hhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhccccccc
Confidence 0000 011111 123589999999999987776552
Q ss_pred ---------------------------------------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCC
Q 006272 385 ---------------------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425 (652)
Q Consensus 385 ---------------------------------------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi 425 (652)
.+.++|++|-+..|..+...|..|-++||+||.+++.|||+
T Consensus 407 ~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNm 486 (1041)
T COG4581 407 TEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINM 486 (1041)
T ss_pred CCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCC
Confidence 35578999999999999999999999999999999999999
Q ss_pred CCccEEEE----cC----CCCCHHHHHHHhhhcccCCCcccceeecc
Q 006272 426 NDVQLIIQ----CE----PPRDVEAYIHRSGRTGRAGVEAAETITQV 464 (652)
Q Consensus 426 ~~v~~VI~----~~----~p~s~~~y~qr~GR~gR~g~~~~~~i~~~ 464 (652)
|.-++|+- +| .+-++..|+|++|||||.|.+....++..
T Consensus 487 Partvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 487 PARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred cccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEe
Confidence 97666652 22 23479999999999999998766555544
No 88
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=3.9e-29 Score=281.31 Aligned_cols=314 Identities=18% Similarity=0.182 Sum_probs=201.1
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~--~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 208 (652)
.|.|+|..++..++.. ..+|+...+|.|||+.+.+.+.+.+..+.. -++|||||+ .|..||..++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~-----------~rvLIVvP~-sL~~QW~~El~ 219 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRA-----------ERVLILVPE-TLQHQWLVEML 219 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCC-----------CcEEEEcCH-HHHHHHHHHHH
Confidence 5899999998777643 479999999999999887766655554321 259999997 89999999996
Q ss_pred HHhcCCCceEEEEeCCcchHHHH--HHhcCCCcEEEeCcHHHHHHHH-hCCcCCCCceEEecCcchhhhhcC--cHHHHH
Q 006272 209 VYGGAVGLTSCCLYGGAPYHAQE--FKLKKGIDVVIGTPGRIKDHIE-RGNIDLSSLKFRVLDEADEMLRMG--FVEDVE 283 (652)
Q Consensus 209 ~~~~~~~~~~~~~~gg~~~~~~~--~~~~~~~~Ilv~Tp~rl~~~l~-~~~~~l~~~~~lViDEah~~l~~g--f~~~~~ 283 (652)
+.+ ++....+.++....... .......+++|+|.+.+...-. ...+.-..+++|||||||++-... -...+.
T Consensus 220 ~kF---~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~ 296 (956)
T PRK04914 220 RRF---NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQ 296 (956)
T ss_pred HHh---CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHH
Confidence 543 24433333222111000 0111246899999988764211 111223467899999999985211 111222
Q ss_pred HHHHhccCCCCceEEEEcccCCh--------------------------------HHHHHHHHhcccCC-----------
Q 006272 284 LILGKVEDANKVQTLLFSATLPS--------------------------------WVKHISTKFLKSDK----------- 320 (652)
Q Consensus 284 ~i~~~~~~~~~~q~l~~SAT~~~--------------------------------~~~~~~~~~~~~~~----------- 320 (652)
.+ ..+.. ....++++|||+-. .+...+..++...+
T Consensus 297 ~v-~~La~-~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ 374 (956)
T PRK04914 297 VV-EQLAE-VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGE 374 (956)
T ss_pred HH-HHHhh-ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 22 22221 13468999999321 00000000000000
Q ss_pred ----------------------------------------eEEEEccCcc-cccCCCceEEEccCC--------------
Q 006272 321 ----------------------------------------KTIDLVGNEK-MKASTNVRHIVLPCS-------------- 345 (652)
Q Consensus 321 ----------------------------------------~~i~~~~~~~-~~~~~~~~~~~~~~~-------------- 345 (652)
..+.-..... ......+..+.+..+
T Consensus 375 ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~ 454 (956)
T PRK04914 375 LLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEAR 454 (956)
T ss_pred HhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHH
Confidence 0000000000 000001111111111
Q ss_pred ----------------------chhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC-----CCcccccccchHHH
Q 006272 346 ----------------------SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQR 398 (652)
Q Consensus 346 ----------------------~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~-----~~~~lh~~~~~~~R 398 (652)
...|...|..++... ...++||||+++..+..|...|. .+..+||+|++.+|
T Consensus 455 ~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR 533 (956)
T PRK04914 455 ARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIER 533 (956)
T ss_pred HHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHH
Confidence 112344555666554 46799999999999999999994 56789999999999
Q ss_pred HHHHhhhcCC--CceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceee
Q 006272 399 EVTLAGFRSG--KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETIT 462 (652)
Q Consensus 399 ~~~~~~f~~g--~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~ 462 (652)
.++++.|+++ .++|||||+++++|+|++.+++|||||+|+++..|+||+||++|.|..+...|.
T Consensus 534 ~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~ 599 (956)
T PRK04914 534 DRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIH 599 (956)
T ss_pred HHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 9999999974 699999999999999999999999999999999999999999999987654443
No 89
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.6e-28 Score=267.98 Aligned_cols=149 Identities=23% Similarity=0.330 Sum_probs=133.5
Q ss_pred ccccCCCHHHHHHHH-----HCCCCCC---hHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccC
Q 006272 111 VSRFRISVPLREKLK-----SKGIESL---FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182 (652)
Q Consensus 111 ~~~~~l~~~l~~~l~-----~~g~~~~---~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~ 182 (652)
.+.|.+..++.+.+. ..||..| +|+|.++|+.++.++++|+.++||+|||++|++|++..+..+.
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~------- 136 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK------- 136 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC-------
Confidence 456889999988877 6899998 9999999999999999999999999999999999998876432
Q ss_pred CCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHH-HHHHHhCCcCCC-
Q 006272 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERGNIDLS- 260 (652)
Q Consensus 183 ~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~~~l~- 260 (652)
.++||+||++||.|+++++..+..++++++.+++||.+...+...+ .++|+|+||++| .+++..+.+.++
T Consensus 137 ------~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~ 208 (970)
T PRK12899 137 ------PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRK 208 (970)
T ss_pred ------CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCH
Confidence 2799999999999999999999999999999999999999887665 499999999999 999988766665
Q ss_pred ------CceEEecCcchhhh
Q 006272 261 ------SLKFRVLDEADEML 274 (652)
Q Consensus 261 ------~~~~lViDEah~~l 274 (652)
.+.++||||||.||
T Consensus 209 ~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 209 EEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HHhhcccccEEEEechhhhh
Confidence 45899999999987
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=1.1e-28 Score=265.10 Aligned_cols=290 Identities=23% Similarity=0.274 Sum_probs=191.7
Q ss_pred EEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHH
Q 006272 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229 (652)
Q Consensus 150 l~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 229 (652)
++.|+||||||++|+..+...+..+ .++||++|+++|+.|+++.|+... +..+..++++.+...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g-------------~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~e 64 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG-------------KSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSE 64 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcC-------------CeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHH
Confidence 4789999999999987766665443 259999999999999999998753 456778888776554
Q ss_pred HHHH----hcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC---c---HHHHHHHHHhccCCCCceEEE
Q 006272 230 QEFK----LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG---F---VEDVELILGKVEDANKVQTLL 299 (652)
Q Consensus 230 ~~~~----~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g---f---~~~~~~i~~~~~~~~~~q~l~ 299 (652)
.... ....++|+|+|+..+. ..+.++++|||||+|...-+. . ..++........ +.++++
T Consensus 65 r~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~---~~~vil 134 (505)
T TIGR00595 65 KLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKF---NCPVVL 134 (505)
T ss_pred HHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhc---CCCEEE
Confidence 3222 2346899999998764 247889999999999865322 1 223333443332 678999
Q ss_pred EcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCc--hhh-hhhHHHHHHhhCCCCeEEEEecchhH-
Q 006272 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS--SAR-SQVIPDIIRCYSSGGRTIIFTETKES- 375 (652)
Q Consensus 300 ~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~l~~ll~~~~~~~~~iVF~~s~~~- 375 (652)
+|||.+.+....+. ......+.+.........+.+....+.... ..- ..++..+.+.+..+.++|||+|++..
T Consensus 135 ~SATPsles~~~~~---~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya 211 (505)
T TIGR00595 135 GSATPSLESYHNAK---QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYS 211 (505)
T ss_pred EeCCCCHHHHHHHh---cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCC
Confidence 99996654333221 111222222111100111111111111000 000 12334444555567899999876543
Q ss_pred -----------------------------------------------------------HHHHHHhc----C--CCcccc
Q 006272 376 -----------------------------------------------------------ASQLADLL----P--GARALH 390 (652)
Q Consensus 376 -----------------------------------------------------------~~~l~~~l----~--~~~~lh 390 (652)
++++.+.| . .+..+|
T Consensus 212 ~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d 291 (505)
T TIGR00595 212 KNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARID 291 (505)
T ss_pred CeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEe
Confidence 23333333 3 566889
Q ss_pred cccchHHH--HHHHhhhcCCCceEEEEccccccCCCCCCccEEE--EcCC----CC------CHHHHHHHhhhcccCCCc
Q 006272 391 GDIQQSQR--EVTLAGFRSGKFMTLVATNVAARGLDINDVQLII--QCEP----PR------DVEAYIHRSGRTGRAGVE 456 (652)
Q Consensus 391 ~~~~~~~R--~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI--~~~~----p~------s~~~y~qr~GR~gR~g~~ 456 (652)
+++++..+ +.+++.|++|+.+|||+|+++++|+|+|+|++|+ ++|. |. ....|+|++||+||.+..
T Consensus 292 ~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~ 371 (505)
T TIGR00595 292 SDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDP 371 (505)
T ss_pred cccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCC
Confidence 99988766 8999999999999999999999999999999885 5554 32 356799999999999988
Q ss_pred ccceeeccCCcc
Q 006272 457 AAETITQVSDSV 468 (652)
Q Consensus 457 ~~~~i~~~~~~~ 468 (652)
+..+|....++.
T Consensus 372 g~viiqt~~p~~ 383 (505)
T TIGR00595 372 GQVIIQTYNPNH 383 (505)
T ss_pred CEEEEEeCCCCC
Confidence 777766655554
No 91
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=5.4e-28 Score=253.67 Aligned_cols=322 Identities=21% Similarity=0.309 Sum_probs=241.3
Q ss_pred cCCCHHHHHH-HHHCCCCCChHHHHHHHHHHhcC------CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 114 FRISVPLREK-LKSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 114 ~~l~~~l~~~-l~~~g~~~~~~~Q~~~i~~~l~~------~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
++.+..+++. +..+.| .||..|++++..|... .+=++++.-|||||+++++.++..+..+.
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~----------- 312 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY----------- 312 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC-----------
Confidence 3445555544 466777 6999999999999854 24689999999999999999999887643
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEeCcHHHHHHHHhCCcCCCCc
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL---K-KGIDVVIGTPGRIKDHIERGNIDLSSL 262 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~---~-~~~~Ilv~Tp~rl~~~l~~~~~~l~~~ 262 (652)
++..++||--||.|.++.+.++....++.+..++|...-......+ . ...+|+|+|. .|.++...++++
T Consensus 313 --Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~L 385 (677)
T COG1200 313 --QAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNL 385 (677)
T ss_pred --eeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecce
Confidence 6999999999999999999999999999999999987765544333 3 4599999995 445567789999
Q ss_pred eEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEc
Q 006272 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (652)
Q Consensus 263 ~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (652)
.++|+||=|++. ..+-..+...-.. .+.+++||||.-+....+.. |-..+-..|+ +.+.-...|...++
T Consensus 386 gLVIiDEQHRFG----V~QR~~L~~KG~~--~Ph~LvMTATPIPRTLAlt~-fgDldvS~Id----ElP~GRkpI~T~~i 454 (677)
T COG1200 386 GLVIIDEQHRFG----VHQRLALREKGEQ--NPHVLVMTATPIPRTLALTA-FGDLDVSIID----ELPPGRKPITTVVI 454 (677)
T ss_pred eEEEEecccccc----HHHHHHHHHhCCC--CCcEEEEeCCCchHHHHHHH-hccccchhhc----cCCCCCCceEEEEe
Confidence 999999999864 2222333333221 46899999997554333222 1111112221 22233344554444
Q ss_pred cCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHH--------HHHHhcC------CCcccccccchHHHHHHHhhhcCC
Q 006272 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESAS--------QLADLLP------GARALHGDIQQSQREVTLAGFRSG 408 (652)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~--------~l~~~l~------~~~~lh~~~~~~~R~~~~~~f~~g 408 (652)
. ...+..++..+......+.++.|.|+-+++.+ .+++.|+ .+..+||.|++.++++++..|++|
T Consensus 455 ~--~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~ 532 (677)
T COG1200 455 P--HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEG 532 (677)
T ss_pred c--cccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcC
Confidence 3 34455566666666668899999999876653 3344443 488999999999999999999999
Q ss_pred CceEEEEccccccCCCCCCccEEEEcCCCC-CHHHHHHHhhhcccCCCcccceeeccCCc
Q 006272 409 KFMTLVATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGVEAAETITQVSDS 467 (652)
Q Consensus 409 ~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~-s~~~y~qr~GR~gR~g~~~~~~i~~~~~~ 467 (652)
+++|||||.|.+.|||+|+.++.|.++.-+ -.++.-|--||+||.+.++.|+++...+.
T Consensus 533 e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 533 EIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred CCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999999999999999999999888755 57788899999999999998888776665
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=5.8e-28 Score=264.31 Aligned_cols=322 Identities=21% Similarity=0.267 Sum_probs=224.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHH-HHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil-~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~ 205 (652)
.|+ .|+++|.-.--.+..|+ |+.++||+|||+++.+|++ +.+. +. .+-|++||..||.|.++
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~-G~-------------~V~IvTpn~yLA~rd~e 140 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT-GK-------------GVHVVTVNDYLAKRDAE 140 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc-CC-------------CEEEEecCHHHHHHHHH
Confidence 465 68999987776666665 9999999999999999996 5553 22 26799999999999999
Q ss_pred HHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHH-HHHHHhCC------cCCCCceEEecCcchhhhh---
Q 006272 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERGN------IDLSSLKFRVLDEADEMLR--- 275 (652)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~------~~l~~~~~lViDEah~~l~--- 275 (652)
++..+...+++++.+++|+.+...+...+. ++|+++||++| .++|.... ..+..+.++||||||.||=
T Consensus 141 ~~~~l~~~LGlsv~~i~~~~~~~er~~~y~--~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeA 218 (830)
T PRK12904 141 WMGPLYEFLGLSVGVILSGMSPEERREAYA--ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEA 218 (830)
T ss_pred HHHHHHhhcCCeEEEEcCCCCHHHHHHhcC--CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccC
Confidence 999999999999999999998887766653 89999999999 88887653 3467899999999999861
Q ss_pred -------------cCcHHHHHHHHHhccCC------CCceEEEEccc---------------------CChHHHHHH--H
Q 006272 276 -------------MGFVEDVELILGKVEDA------NKVQTLLFSAT---------------------LPSWVKHIS--T 313 (652)
Q Consensus 276 -------------~gf~~~~~~i~~~~~~~------~~~q~l~~SAT---------------------~~~~~~~~~--~ 313 (652)
..++..+..+...+... .+.+.+.+|.. +..++.... .
T Consensus 219 rtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~ 298 (830)
T PRK12904 219 RTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAH 298 (830)
T ss_pred CCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHH
Confidence 11334444444444221 01122222221 001111111 0
Q ss_pred HhcccCCeEEE---------------------------------------------------------------------
Q 006272 314 KFLKSDKKTID--------------------------------------------------------------------- 324 (652)
Q Consensus 314 ~~~~~~~~~i~--------------------------------------------------------------------- 324 (652)
.++..+...+-
T Consensus 299 ~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 378 (830)
T PRK12904 299 ELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTE 378 (830)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHH
Confidence 11111111110
Q ss_pred -------------EccCcccccCCCceEEEccCCchhhhhhHHHHHHh-hCCCCeEEEEecchhHHHHHHHhcC----CC
Q 006272 325 -------------LVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP----GA 386 (652)
Q Consensus 325 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~iVF~~s~~~~~~l~~~l~----~~ 386 (652)
.++..++......... +......|...+...+.. +..+.++||||+|+..++.|+..|. .+
T Consensus 379 ~~E~~~iY~l~vv~IPtnkp~~r~d~~d~-i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~ 457 (830)
T PRK12904 379 AEEFREIYNLDVVVIPTNRPMIRIDHPDL-IYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPH 457 (830)
T ss_pred HHHHHHHhCCCEEEcCCCCCeeeeeCCCe-EEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCce
Confidence 0000000000000001 112334566666666644 4467899999999999999999997 56
Q ss_pred cccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCc--------------------------------------
Q 006272 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV-------------------------------------- 428 (652)
Q Consensus 387 ~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v-------------------------------------- 428 (652)
..||+. +.+|+..+..|+.+...|+||||+|+||+||+==
T Consensus 458 ~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GG 535 (830)
T PRK12904 458 NVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGG 535 (830)
T ss_pred EeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCC
Confidence 678995 8899999999999999999999999999999732
Q ss_pred cEEEEcCCCCCHHHHHHHhhhcccCCCcccceeec-cCCcchH
Q 006272 429 QLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQ-VSDSVIP 470 (652)
Q Consensus 429 ~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~-~~~~~~~ 470 (652)
=|||-...|.|..---|-.||+||.|.+|.+.+++ .+++.+.
T Consensus 536 LhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~~ 578 (830)
T PRK12904 536 LHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMR 578 (830)
T ss_pred CEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHHH
Confidence 27998999999999999999999999998765544 4444443
No 93
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=6.2e-28 Score=262.25 Aligned_cols=353 Identities=21% Similarity=0.285 Sum_probs=254.6
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEE
Q 006272 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (652)
Q Consensus 115 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~-~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 193 (652)
.+|.+-+.++ .|...+.++|.....+++.+ .++++|||||+|||..+++-+|+.+.++.... +.-......++++
T Consensus 295 elP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~d--gs~nl~~fKIVYI 370 (1674)
T KOG0951|consen 295 ELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRED--GSVNLAPFKIVYI 370 (1674)
T ss_pred CCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccc--cceecccceEEEE
Confidence 3555555555 46667999999999998866 57999999999999999999999998765421 1111234579999
Q ss_pred eccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcC---CCCceEEecCcc
Q 006272 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID---LSSLKFRVLDEA 270 (652)
Q Consensus 194 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~---l~~~~~lViDEa 270 (652)
+|..+|++.+...|.+.....+++|.-++|+.....+. -..++|+|+||+.. +.+.++.-+ .+-++++|+||.
T Consensus 371 APmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEI 446 (1674)
T KOG0951|consen 371 APMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEI 446 (1674)
T ss_pred eeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhh
Confidence 99999999999999888888999999999987654332 23489999999986 444443222 345789999999
Q ss_pred hhhhhcCcHHHHHHHHHhccC-----CCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCC
Q 006272 271 DEMLRMGFVEDVELILGKVED-----ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (652)
Q Consensus 271 h~~l~~gf~~~~~~i~~~~~~-----~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 345 (652)
|.+ ....++.++.|...... ...++++.+|||+|+.. ....|+..++.-+... +....+..+.|.++-+.
T Consensus 447 HLL-hDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~--DV~~Fl~v~~~glf~f--d~syRpvPL~qq~Igi~ 521 (1674)
T KOG0951|consen 447 HLL-HDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYE--DVASFLRVDPEGLFYF--DSSYRPVPLKQQYIGIT 521 (1674)
T ss_pred hhc-ccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchh--hhHHHhccCccccccc--CcccCcCCccceEeccc
Confidence 965 33445666665544422 22679999999999853 3455554444433322 22344556666666544
Q ss_pred chh---hhh-----hHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC---------------------------------
Q 006272 346 SSA---RSQ-----VIPDIIRCYSSGGRTIIFTETKESASQLADLLP--------------------------------- 384 (652)
Q Consensus 346 ~~~---~~~-----~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~--------------------------------- 384 (652)
... ++. ....++... ..+++|||+-+++++.+.+..++
T Consensus 522 ek~~~~~~qamNe~~yeKVm~~a-gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~ 600 (1674)
T KOG0951|consen 522 EKKPLKRFQAMNEACYEKVLEHA-GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNP 600 (1674)
T ss_pred cCCchHHHHHHHHHHHHHHHHhC-CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccCh
Confidence 332 222 222334444 45899999999988766665542
Q ss_pred --------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEE----cCC------CCCHHHHHHH
Q 006272 385 --------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CEP------PRDVEAYIHR 446 (652)
Q Consensus 385 --------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~~------p~s~~~y~qr 446 (652)
+++.+|++|+..+|..+.+.|++|.++|||+|-.+++|+|+|.-+++|- ||+ +.++.+-+||
T Consensus 601 dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qm 680 (1674)
T KOG0951|consen 601 DLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQM 680 (1674)
T ss_pred hHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHH
Confidence 4678999999999999999999999999999999999999998766663 664 4589999999
Q ss_pred hhhcccCCCccc-ceeeccCCcchHHHHHHHHHHHh
Q 006272 447 SGRTGRAGVEAA-ETITQVSDSVIPAFKSAAEELLN 481 (652)
Q Consensus 447 ~GR~gR~g~~~~-~~i~~~~~~~~~~~~~~~~~~~~ 481 (652)
.||+||.+-+.. ..++.....+..++...+.+-|.
T Consensus 681 lgragrp~~D~~gegiiit~~se~qyyls~mn~qLp 716 (1674)
T KOG0951|consen 681 LGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLP 716 (1674)
T ss_pred HhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCC
Confidence 999999986543 34455566677777776655543
No 94
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.1e-27 Score=260.94 Aligned_cols=320 Identities=19% Similarity=0.259 Sum_probs=216.9
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.|+ .|+++|.-+--.+..|+ |+...||+|||+++.+|++.....+. .+-|++||.-||.|-+++
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~-------------~v~vvT~neyLA~Rd~e~ 140 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGK-------------GVHVVTVNEYLSSRDATE 140 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCC-------------CeEEEeccHHHHHhhHHH
Confidence 455 68999987776777776 99999999999999999988777654 389999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHH-HHHHhC------CcCCCCceEEecCcchhhhh----
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK-DHIERG------NIDLSSLKFRVLDEADEMLR---- 275 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~-~~l~~~------~~~l~~~~~lViDEah~~l~---- 275 (652)
+..+...+++++.++.++.+........ .++|+++|...|- ++|+.+ ......+.+.||||+|.+|=
T Consensus 141 ~~~~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDear 218 (796)
T PRK12906 141 MGELYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEAR 218 (796)
T ss_pred HHHHHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCC
Confidence 9999999999999999887666544433 4899999998773 333322 12245688999999998761
Q ss_pred -----------c-CcHHHHHHHHHhccCC-----------------CCceEEEEccc---------------------CC
Q 006272 276 -----------M-GFVEDVELILGKVEDA-----------------NKVQTLLFSAT---------------------LP 305 (652)
Q Consensus 276 -----------~-gf~~~~~~i~~~~~~~-----------------~~~q~l~~SAT---------------------~~ 305 (652)
+ .+...+..+...+... ...+.+.++.. +.
T Consensus 219 tPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~ 298 (796)
T PRK12906 219 TPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALA 298 (796)
T ss_pred CceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHH
Confidence 0 1222333333332210 01112222210 01
Q ss_pred hHHHHHHH--HhcccCCeEE------EEcc--------------------------------------------------
Q 006272 306 SWVKHIST--KFLKSDKKTI------DLVG-------------------------------------------------- 327 (652)
Q Consensus 306 ~~~~~~~~--~~~~~~~~~i------~~~~-------------------------------------------------- 327 (652)
.++..... .++..+...+ .++.
T Consensus 299 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl 378 (796)
T PRK12906 299 HHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKL 378 (796)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchh
Confidence 11111111 1111111111 0000
Q ss_pred --------------------------CcccccCCCceEEEccCCchhhhhhHHHHH-HhhCCCCeEEEEecchhHHHHHH
Q 006272 328 --------------------------NEKMKASTNVRHIVLPCSSSARSQVIPDII-RCYSSGGRTIIFTETKESASQLA 380 (652)
Q Consensus 328 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~~~~iVF~~s~~~~~~l~ 380 (652)
..++......... +......+...+...+ .....+.++||||+|+..++.|+
T Consensus 379 ~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~-i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls 457 (796)
T PRK12906 379 SGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDL-LYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLS 457 (796)
T ss_pred hccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCe-EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHH
Confidence 0000000000000 1112344555555555 34457789999999999999999
Q ss_pred HhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCC---Ccc-----EEEEcCCCCCHHHHHHHhh
Q 006272 381 DLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN---DVQ-----LIIQCEPPRDVEAYIHRSG 448 (652)
Q Consensus 381 ~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~---~v~-----~VI~~~~p~s~~~y~qr~G 448 (652)
..|. .+..+|+++.+.++..+...++.|. |+|||++|+||+||+ +|. |||+++.|.|.+.|.|+.|
T Consensus 458 ~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~G 535 (796)
T PRK12906 458 HLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRG 535 (796)
T ss_pred HHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhh
Confidence 9997 6778999999888888888887776 999999999999994 899 9999999999999999999
Q ss_pred hcccCCCcccceeeccCCc
Q 006272 449 RTGRAGVEAAETITQVSDS 467 (652)
Q Consensus 449 R~gR~g~~~~~~i~~~~~~ 467 (652)
||||.|.+|.+..++.-++
T Consensus 536 RtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 536 RSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred hhccCCCCcceEEEEeccc
Confidence 9999999987766554443
No 95
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=3.5e-27 Score=260.98 Aligned_cols=322 Identities=22% Similarity=0.254 Sum_probs=252.7
Q ss_pred cCCCHHHHHHHHHC-CCCCChHHHHHHHHHHhcC------CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 114 FRISVPLREKLKSK-GIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 114 ~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~l~~------~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
|..+...+..+.+. +| .-||-|..||..+... -|=++|+.-|.|||.+++-+++..+..++
T Consensus 577 f~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GK----------- 644 (1139)
T COG1197 577 FPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGK----------- 644 (1139)
T ss_pred CCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCC-----------
Confidence 55667777777654 55 6899999999998743 48899999999999999999998887753
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhc----CCCcEEEeCcHHHHHHHHhCCcCCCCc
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK----KGIDVVIGTPGRIKDHIERGNIDLSSL 262 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~----~~~~Ilv~Tp~rl~~~l~~~~~~l~~~ 262 (652)
++.||+||.-||+|.++.|+..+...++++..+.--.+...+...+. ..+||||+|. .|....+.+.++
T Consensus 645 --QVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-----rLL~kdv~FkdL 717 (1139)
T COG1197 645 --QVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-----RLLSKDVKFKDL 717 (1139)
T ss_pred --eEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-----HhhCCCcEEecC
Confidence 69999999999999999999999999999999988888777766553 4689999994 444567789999
Q ss_pred eEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEc
Q 006272 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (652)
Q Consensus 263 ~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (652)
.+|||||-|++. -.-+.-++.+.. ++-++-||||.-+....++-.-+ .+...|...+ .....++.++.
T Consensus 718 GLlIIDEEqRFG-----Vk~KEkLK~Lr~--~VDvLTLSATPIPRTL~Msm~Gi-RdlSvI~TPP----~~R~pV~T~V~ 785 (1139)
T COG1197 718 GLLIIDEEQRFG-----VKHKEKLKELRA--NVDVLTLSATPIPRTLNMSLSGI-RDLSVIATPP----EDRLPVKTFVS 785 (1139)
T ss_pred CeEEEechhhcC-----ccHHHHHHHHhc--cCcEEEeeCCCCcchHHHHHhcc-hhhhhccCCC----CCCcceEEEEe
Confidence 999999999863 333344444444 67899999998776666665555 3333333222 22233444444
Q ss_pred cCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC------CCcccccccchHHHHHHHhhhcCCCceEEEEc
Q 006272 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (652)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT 416 (652)
+.+.. .+-..+++.+..+|++-..+|..+..+.++..|+ .+.+.||.|+..+-+.+|..|.+|+++|||||
T Consensus 786 ~~d~~---~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T 862 (1139)
T COG1197 786 EYDDL---LIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT 862 (1139)
T ss_pred cCChH---HHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 33332 2233445555688999999999999999888887 68899999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEcCCCC-CHHHHHHHhhhcccCCCcccceeeccCCcch
Q 006272 417 NVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGVEAAETITQVSDSVI 469 (652)
Q Consensus 417 ~~~~~Gldi~~v~~VI~~~~p~-s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~ 469 (652)
.+.+.|||||+++.+|..+.-. -.++..|--||+||....+.+++++.+...+
T Consensus 863 TIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~l 916 (1139)
T COG1197 863 TIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKAL 916 (1139)
T ss_pred eeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCcccc
Confidence 9999999999999988766544 5789999999999999999998887765544
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=1.5e-27 Score=253.37 Aligned_cols=293 Identities=24% Similarity=0.272 Sum_probs=198.0
Q ss_pred CCChHHHHHHHHHHhc----CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVLD----GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~----~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~ 205 (652)
..|+++|++++..+.. .+..++++|||+|||+.++..+.... . .+||||||++|+.||++
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~-~---------------~~Lvlv~~~~L~~Qw~~ 98 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK-R---------------STLVLVPTKELLDQWAE 98 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc-C---------------CEEEEECcHHHHHHHHH
Confidence 3699999999999997 89999999999999998776554322 1 28999999999999997
Q ss_pred HHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHH
Q 006272 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285 (652)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i 285 (652)
.+....... ..+. .+++.... ... ..|+|+|...+........+....+.+||+||||++.... ...+
T Consensus 99 ~~~~~~~~~-~~~g-~~~~~~~~-----~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~ 166 (442)
T COG1061 99 ALKKFLLLN-DEIG-IYGGGEKE-----LEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS----YRRI 166 (442)
T ss_pred HHHHhcCCc-cccc-eecCceec-----cCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH----HHHH
Confidence 777654321 1222 33332211 111 4699999998877521123334468999999999987444 3445
Q ss_pred HHhccCCCCceEEEEcccCChHHHHHHHHhc-ccCCeEEEEccCc----ccccCCCceEEEc------------------
Q 006272 286 LGKVEDANKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNE----KMKASTNVRHIVL------------------ 342 (652)
Q Consensus 286 ~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~~~------------------ 342 (652)
...+... ..++.||||++.........+. ...+........+ ....+..+..+..
T Consensus 167 ~~~~~~~--~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~ 244 (442)
T COG1061 167 LELLSAA--YPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFR 244 (442)
T ss_pred HHhhhcc--cceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhh
Confidence 5554431 1289999997633211111111 0111111111000 0000000000000
Q ss_pred ------------------cCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcCC---CcccccccchHHHHHH
Q 006272 343 ------------------PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG---ARALHGDIQQSQREVT 401 (652)
Q Consensus 343 ------------------~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~~---~~~lh~~~~~~~R~~~ 401 (652)
......+...+..++..+..+.+++|||.+..++..++..|.. +..+.+..++.+|..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~i 324 (442)
T COG1061 245 ELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAI 324 (442)
T ss_pred hhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHH
Confidence 0111122233333333332467999999999999999999862 3589999999999999
Q ss_pred HhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhccc
Q 006272 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452 (652)
Q Consensus 402 ~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR 452 (652)
++.|+.|.+++||++.++..|+|+|+++++|......|...|+||+||.-|
T Consensus 325 l~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 325 LERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999999999
No 97
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=4.8e-27 Score=219.11 Aligned_cols=167 Identities=33% Similarity=0.530 Sum_probs=146.4
Q ss_pred hHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006272 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (652)
Q Consensus 133 ~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 212 (652)
||+|.++++.+.+++++++.||||+|||++|++|+++.+.... ..++||++|+++|+.|+++.+..++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~-----------~~~~lii~P~~~l~~q~~~~~~~~~~ 69 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK-----------DARVLIIVPTRALAEQQFERLRKFFS 69 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS-----------SSEEEEEESSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC-----------CceEEEEeeccccccccccccccccc
Confidence 7999999999999999999999999999999999999988752 12699999999999999999999998
Q ss_pred CCCceEEEEeCCcchH-HHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccC
Q 006272 213 AVGLTSCCLYGGAPYH-AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291 (652)
Q Consensus 213 ~~~~~~~~~~gg~~~~-~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~ 291 (652)
..++++..++++.... .....+..+++|+|+||++|.+++.....++.++++|||||+|.+..+.+...+..|+..+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 70 NTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp TTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred ccccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 8889999999998865 444455567999999999999999886667778999999999999998889999999999866
Q ss_pred CCCceEEEEcccCChHHHH
Q 006272 292 ANKVQTLLFSATLPSWVKH 310 (652)
Q Consensus 292 ~~~~q~l~~SAT~~~~~~~ 310 (652)
..+.|++++|||++..+++
T Consensus 150 ~~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 150 FKNIQIILLSATLPSNVEK 168 (169)
T ss_dssp TTTSEEEEEESSSTHHHHH
T ss_pred CCCCcEEEEeeCCChhHhh
Confidence 5568999999999966554
No 98
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=5.7e-26 Score=247.85 Aligned_cols=322 Identities=22% Similarity=0.295 Sum_probs=216.0
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.|. .|+++|.-.--.+..| -|+.++||.|||++|.+|++...+.+. .+.||+|+++||.|.+++
T Consensus 79 lgm-~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g~-------------~VhIvT~ndyLA~RD~e~ 142 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALTGK-------------GVHVITVNDYLARRDAEN 142 (908)
T ss_pred hCC-CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhcCC-------------CEEEEeCCHHHHHHHHHH
Confidence 354 6788886554444444 489999999999999999997776543 299999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHH-HHHHHhC-CcC-----CCCceEEecCcchhhhhc---
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG-NID-----LSSLKFRVLDEADEMLRM--- 276 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-~~~-----l~~~~~lViDEah~~l~~--- 276 (652)
+..+...+++++.+++++.+.... .-.-.++|+++||++| .++|..+ .+. ...+.++||||||.||-.
T Consensus 143 m~~l~~~lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEAr 220 (908)
T PRK13107 143 NRPLFEFLGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEAR 220 (908)
T ss_pred HHHHHHhcCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCC
Confidence 999999999999999998876432 2233689999999999 8888765 333 377899999999998721
Q ss_pred -------------CcHHHHHHHHHhccCC-----------------CCceEEEEccc--------C--------------
Q 006272 277 -------------GFVEDVELILGKVEDA-----------------NKVQTLLFSAT--------L-------------- 304 (652)
Q Consensus 277 -------------gf~~~~~~i~~~~~~~-----------------~~~q~l~~SAT--------~-------------- 304 (652)
.++..+..+...+... .+.+.+-||-. +
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~ 300 (908)
T PRK13107 221 TPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYS 300 (908)
T ss_pred CceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccC
Confidence 1222233333222210 01122222210 0
Q ss_pred ------ChHHHHHHH--HhcccCCeEEE------EccCc-----------------------------------------
Q 006272 305 ------PSWVKHIST--KFLKSDKKTID------LVGNE----------------------------------------- 329 (652)
Q Consensus 305 ------~~~~~~~~~--~~~~~~~~~i~------~~~~~----------------------------------------- 329 (652)
..++.+..+ .++..+...|- ++...
T Consensus 301 ~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qnf 380 (908)
T PRK13107 301 AANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNY 380 (908)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHH
Confidence 000111110 11111111110 11000
Q ss_pred -----------------------------------ccccCCCceEEEccCCchhhhh-hHHHHHHhhCCCCeEEEEecch
Q 006272 330 -----------------------------------KMKASTNVRHIVLPCSSSARSQ-VIPDIIRCYSSGGRTIIFTETK 373 (652)
Q Consensus 330 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~-~l~~ll~~~~~~~~~iVF~~s~ 373 (652)
++.........++ .....|.. ++..+...+..+.++||||+|+
T Consensus 381 Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy-~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv 459 (908)
T PRK13107 381 FRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVY-LTADEKYQAIIKDIKDCRERGQPVLVGTVSI 459 (908)
T ss_pred HHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEE-eCHHHHHHHHHHHHHHHHHcCCCEEEEeCcH
Confidence 0000000000111 11233333 4455555666889999999999
Q ss_pred hHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCC----------------------
Q 006272 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND---------------------- 427 (652)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~---------------------- 427 (652)
..++.|+.+|. .+..||+.+++.++..+.+.|+.|. |+|||++|+||+||.=
T Consensus 460 ~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~ 537 (908)
T PRK13107 460 EQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKI 537 (908)
T ss_pred HHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHH
Confidence 99999999997 5678999999999999999999998 9999999999999961
Q ss_pred ----------c-----cEEEEcCCCCCHHHHHHHhhhcccCCCcccceeec-cCCcch
Q 006272 428 ----------V-----QLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQ-VSDSVI 469 (652)
Q Consensus 428 ----------v-----~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~-~~~~~~ 469 (652)
| =|||-...+.|..-=-|-.||+||-|.+|...++. .+++.+
T Consensus 538 ~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~ 595 (908)
T PRK13107 538 KADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM 595 (908)
T ss_pred HHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH
Confidence 1 27898899999999999999999999998765544 344433
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.4e-24 Score=205.81 Aligned_cols=312 Identities=19% Similarity=0.231 Sum_probs=213.3
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l----~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
+++|.|+.+-..++ +.++.|+.|-||+|||....-.+-+.+.. +.++.|.+|....+..++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~-------------G~~vciASPRvDVclEl~~R 163 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ-------------GGRVCIASPRVDVCLELYPR 163 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc-------------CCeEEEecCcccchHHHHHH
Confidence 68999988776655 66899999999999998654444444443 33699999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHH
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~ 286 (652)
++.-. .+..+.++||+.+..-+ .+++|+|.-.|+.+- +.++++||||+|.+- ..--..+..-.
T Consensus 164 lk~aF--~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP-~~~d~~L~~Av 226 (441)
T COG4098 164 LKQAF--SNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFP-FSDDQSLQYAV 226 (441)
T ss_pred HHHhh--ccCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEEEEecccccc-ccCCHHHHHHH
Confidence 88765 45677888988654422 789999998887753 346889999999653 11112222222
Q ss_pred HhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhh------hhHHHHH-Hh
Q 006272 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS------QVIPDII-RC 359 (652)
Q Consensus 287 ~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~ll-~~ 359 (652)
..-... .--+|.+|||.+...... ........+.+...- ...+..+..+........+. ..|...+ +.
T Consensus 227 ~~ark~-~g~~IylTATp~k~l~r~---~~~g~~~~~klp~Rf-H~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq 301 (441)
T COG4098 227 KKARKK-EGATIYLTATPTKKLERK---ILKGNLRILKLPARF-HGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQ 301 (441)
T ss_pred HHhhcc-cCceEEEecCChHHHHHH---hhhCCeeEeecchhh-cCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHH
Confidence 222211 346899999998765443 332222233332211 11112222222222222222 1233333 33
Q ss_pred hCCCCeEEEEecchhHHHHHHHhcC------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEE
Q 006272 360 YSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ 433 (652)
Q Consensus 360 ~~~~~~~iVF~~s~~~~~~l~~~l~------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~ 433 (652)
...+.+++||++++...++++..|+ .+...|+.- ..|.+..+.|++|++.+||+|.+++||+.+|+|+++|.
T Consensus 302 ~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl 379 (441)
T COG4098 302 RKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL 379 (441)
T ss_pred HhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe
Confidence 4467899999999999999999984 445666643 57889999999999999999999999999999998664
Q ss_pred cC-C-CCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHH
Q 006272 434 CE-P-PRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEEL 479 (652)
Q Consensus 434 ~~-~-p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~ 479 (652)
-. - -.+.+..+|.+||+||.-......+.+.+......+....+++
T Consensus 380 gaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~keI 427 (441)
T COG4098 380 GAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKEI 427 (441)
T ss_pred cCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHHHH
Confidence 32 2 2478899999999999987777778888877766666555443
No 100
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=7.1e-25 Score=241.65 Aligned_cols=296 Identities=21% Similarity=0.258 Sum_probs=210.0
Q ss_pred hHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH-Hh
Q 006272 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV-YG 211 (652)
Q Consensus 133 ~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~-~~ 211 (652)
+....+.+.++.+++-+|++++||||||+..-..+++.... ....+.++.|.|--|..+++.+.. ++
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~------------~~g~I~~tQPRRlAArsvA~RvAeel~ 119 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG------------IAGKIGCTQPRRLAARSVAERVAEELG 119 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc------------cCCeEEecCchHHHHHHHHHHHHHHhC
Confidence 44566777888889999999999999999766656655432 123588999999777777766643 33
Q ss_pred cCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhh-hcCc-HHHHHHHHHhc
Q 006272 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML-RMGF-VEDVELILGKV 289 (652)
Q Consensus 212 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l-~~gf-~~~~~~i~~~~ 289 (652)
...+-.|....-. .......+.|-++|.|.|+..+..+.+ |+.+++|||||||+-+ +-.| .-.+..++...
T Consensus 120 ~~~G~~VGY~iRf------e~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~r 192 (845)
T COG1643 120 EKLGETVGYSIRF------ESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARR 192 (845)
T ss_pred CCcCceeeEEEEe------eccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhc
Confidence 3333222221111 122345589999999999999998776 9999999999999743 2222 22234445555
Q ss_pred cCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCC-chh-hhhhHHHHHHhh--CCCCe
Q 006272 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS-SSA-RSQVIPDIIRCY--SSGGR 365 (652)
Q Consensus 290 ~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~ll~~~--~~~~~ 365 (652)
+. ..++|+||||+... . +..++ .+...+.+.+.. ..++..|.... ... ....+...+... ...|.
T Consensus 193 r~--DLKiIimSATld~~--r-fs~~f-~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~Gd 261 (845)
T COG1643 193 RD--DLKLIIMSATLDAE--R-FSAYF-GNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGS 261 (845)
T ss_pred CC--CceEEEEecccCHH--H-HHHHc-CCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCC
Confidence 54 58999999999763 3 44555 445666665443 34455553322 222 233344444332 35789
Q ss_pred EEEEecchhHHHHHHHhcC--------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCC-
Q 006272 366 TIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP- 436 (652)
Q Consensus 366 ~iVF~~s~~~~~~l~~~l~--------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~- 436 (652)
+|||.+...+.+.+++.|. .+.++||.|+..++.++++.-..+..+|++||++++.+|.||+|.+||+-+.
T Consensus 262 ILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~a 341 (845)
T COG1643 262 ILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLA 341 (845)
T ss_pred EEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcc
Confidence 9999999999998887776 3678999999999999999888888889999999999999999999998554
Q ss_pred -----------------CCCHHHHHHHhhhcccCCCcccc
Q 006272 437 -----------------PRDVEAYIHRSGRTGRAGVEAAE 459 (652)
Q Consensus 437 -----------------p~s~~~y~qr~GR~gR~g~~~~~ 459 (652)
|.|-++..||.|||||.+ +|.|
T Consensus 342 k~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGic 380 (845)
T COG1643 342 KEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGIC 380 (845)
T ss_pred cccccccccCceeeeEEEechhhhhhhccccccCC-CceE
Confidence 458899999999999997 4444
No 101
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.5e-24 Score=225.41 Aligned_cols=286 Identities=21% Similarity=0.287 Sum_probs=202.3
Q ss_pred hHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH----
Q 006272 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD---- 208 (652)
Q Consensus 133 ~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~---- 208 (652)
+..-.+.+..+.+++-+|+.++||||||+. +| +.|..... .....+.+..|.|--|..++....
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG~--------~~~g~I~~TQPRRVAavslA~RVAeE~~ 120 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAGF--------ASSGKIACTQPRRVAAVSLAKRVAEEMG 120 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhccc--------ccCCcEEeecCchHHHHHHHHHHHHHhC
Confidence 344567778888999999999999999994 44 22333221 222248899999966655554443
Q ss_pred -HHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC--cHHHHHHH
Q 006272 209 -VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG--FVEDVELI 285 (652)
Q Consensus 209 -~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g--f~~~~~~i 285 (652)
.++...++.+..- ......+.|.++|.|.|++.+..+.+ |+.+++|||||||+-.-.. ..-.++.|
T Consensus 121 ~~lG~~VGY~IRFe----------d~ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki 189 (674)
T KOG0922|consen 121 CQLGEEVGYTIRFE----------DSTSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKI 189 (674)
T ss_pred CCcCceeeeEEEec----------ccCCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHH
Confidence 2333344444331 11223488999999999999988776 8999999999999632110 12233333
Q ss_pred HHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhh-h---HHHHHHhhC
Q 006272 286 LGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ-V---IPDIIRCYS 361 (652)
Q Consensus 286 ~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---l~~ll~~~~ 361 (652)
+... +..++|++|||+.. .....|+ .....+.+.+.. ..++.+|..-+..+-.. . +..+... .
T Consensus 190 ~~~R---~~LklIimSATlda---~kfS~yF-~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~-E 256 (674)
T KOG0922|consen 190 LKKR---PDLKLIIMSATLDA---EKFSEYF-NNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLT-E 256 (674)
T ss_pred HhcC---CCceEEEEeeeecH---HHHHHHh-cCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHcc-C
Confidence 3333 35799999999975 3345555 344555554432 34555555544433222 2 2233333 5
Q ss_pred CCCeEEEEecchhHHHHHHHhcC--------C----CcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCcc
Q 006272 362 SGGRTIIFTETKESASQLADLLP--------G----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~--------~----~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~ 429 (652)
+.+-+|||...+++++.+++.|. . +.++||.|+..++.++++.-..|..+|++||++++..|.|++|.
T Consensus 257 ~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 257 PPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceE
Confidence 77899999999999999998886 1 36799999999999999999999999999999999999999999
Q ss_pred EEEEcCC------------------CCCHHHHHHHhhhcccCC
Q 006272 430 LIIQCEP------------------PRDVEAYIHRSGRTGRAG 454 (652)
Q Consensus 430 ~VI~~~~------------------p~s~~~y~qr~GR~gR~g 454 (652)
+||+-++ |-|..+-.||+|||||.|
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~ 379 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG 379 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC
Confidence 9998553 568999999999999998
No 102
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=2.5e-25 Score=238.63 Aligned_cols=344 Identities=22% Similarity=0.294 Sum_probs=239.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHH--HHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEE
Q 006272 116 ISVPLREKLKSKGIESLFPIQAMTF--DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (652)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i--~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 193 (652)
.+....-..+..|+..++.||.+++ |.++.++++|..+||+.|||++.-+.++..+..... .++.+
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr------------~~lli 275 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR------------NVLLI 275 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh------------ceeEe
Confidence 3444445567789999999999998 778899999999999999999999998887765432 37999
Q ss_pred eccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHh--CCcCCCCceEEecCcch
Q 006272 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER--GNIDLSSLKFRVLDEAD 271 (652)
Q Consensus 194 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~--~~~~l~~~~~lViDEah 271 (652)
.|....++.-...+..+....|+.+...+|..+.... .+..++.|||-++-..++.+ ..-.+..+.+||+||.|
T Consensus 276 lp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElh 351 (1008)
T KOG0950|consen 276 LPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELH 351 (1008)
T ss_pred cceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeee
Confidence 9998888888888888888889999888876554422 23478999999987666543 22346778999999999
Q ss_pred hhhhcCcHHHHHHHHHhccC---CCCceEEEEcccCChHHHHHHHHhccc-----CCeEEEEccCccc----------cc
Q 006272 272 EMLRMGFVEDVELILGKVED---ANKVQTLLFSATLPSWVKHISTKFLKS-----DKKTIDLVGNEKM----------KA 333 (652)
Q Consensus 272 ~~l~~gf~~~~~~i~~~~~~---~~~~q~l~~SAT~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~----------~~ 333 (652)
.+.+.+....++.++..+-. ...+|+|.||||+|+- .+...++.. ...++.+...-+. ..
T Consensus 352 mi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~ 429 (1008)
T KOG0950|consen 352 MIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKV 429 (1008)
T ss_pred eeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccchhhHH
Confidence 99999988888877765521 1236899999999872 333444321 1111111100000 00
Q ss_pred CCCceEEEccCCchhhhhhHHHHHH-hhCCCCeEEEEecchhHHHHHHHhcC----------------------------
Q 006272 334 STNVRHIVLPCSSSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP---------------------------- 384 (652)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~iVF~~s~~~~~~l~~~l~---------------------------- 384 (652)
..++...+.........+.+..+.. ....+.++||||+++..|+.++..+.
T Consensus 430 lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~ 509 (1008)
T KOG0950|consen 430 LREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRI 509 (1008)
T ss_pred HHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcC
Confidence 0000000000000001112222222 22244569999999999988875551
Q ss_pred --------------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcC---C-CCCHHHHHHH
Q 006272 385 --------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE---P-PRDVEAYIHR 446 (652)
Q Consensus 385 --------------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~---~-p~s~~~y~qr 446 (652)
.+.++|++++..+|+.+...|++|.+.|++||+.++.|+++|..+++|-.- . +.+.-+|.||
T Consensus 510 ~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM 589 (1008)
T KOG0950|consen 510 PGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQM 589 (1008)
T ss_pred CcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhh
Confidence 577899999999999999999999999999999999999999998888632 2 3478899999
Q ss_pred hhhcccCCCcccc-eeeccCCcchHHHHHHHH
Q 006272 447 SGRTGRAGVEAAE-TITQVSDSVIPAFKSAAE 477 (652)
Q Consensus 447 ~GR~gR~g~~~~~-~i~~~~~~~~~~~~~~~~ 477 (652)
+|||||+|-+... .|+.....+...+.+.+.
T Consensus 590 ~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 590 VGRAGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhhhhhcccccCcceEEEeeccchhHHHHHHh
Confidence 9999999966543 566666666555554433
No 103
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=1.4e-24 Score=250.21 Aligned_cols=306 Identities=17% Similarity=0.214 Sum_probs=192.2
Q ss_pred CCChHHHHHHHHHHh----c-CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVL----D-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l----~-~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~ 204 (652)
..++++|.+||..+. . .+.+|++++||||||++++ .++..+.... ...++|||+|+++|+.|+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~~----------~~~rVLfLvDR~~L~~Qa~ 480 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKAK----------RFRRILFLVDRSALGEQAE 480 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhcC----------ccCeEEEEecHHHHHHHHH
Confidence 358999999998775 2 3679999999999998744 3444554321 1237999999999999999
Q ss_pred HHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhC-----CcCCCCceEEecCcchhhhh----
Q 006272 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-----NIDLSSLKFRVLDEADEMLR---- 275 (652)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-----~~~l~~~~~lViDEah~~l~---- 275 (652)
+.|..+.......+..+++...... ........|+|+|...|...+... .+.+..+++||+||||+-..
T Consensus 481 ~~F~~~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~ 558 (1123)
T PRK11448 481 DAFKDTKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKE 558 (1123)
T ss_pred HHHHhcccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccc
Confidence 9998864322212212222111111 112335789999999998765431 24567889999999998521
Q ss_pred -----cC------cHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHH--------------Hhccc--CCeEEEEccC
Q 006272 276 -----MG------FVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST--------------KFLKS--DKKTIDLVGN 328 (652)
Q Consensus 276 -----~g------f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~--------------~~~~~--~~~~i~~~~~ 328 (652)
.+ +...+..++.++. ...|.||||+......+.. .++-. .+..+...-.
T Consensus 559 ~~~~~~~~~~~~~~~~~yr~iL~yFd----A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~ 634 (1123)
T PRK11448 559 MSEGELQFRDQLDYVSKYRRVLDYFD----AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLS 634 (1123)
T ss_pred cccchhccchhhhHHHHHHHHHhhcC----ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEec
Confidence 01 2456677777552 3679999997532221111 01100 0111110000
Q ss_pred cc---cccC----------CCceEEEcc------CCc-------hhhh-hhHHHHHHhh--CCCCeEEEEecchhHHHHH
Q 006272 329 EK---MKAS----------TNVRHIVLP------CSS-------SARS-QVIPDIIRCY--SSGGRTIIFTETKESASQL 379 (652)
Q Consensus 329 ~~---~~~~----------~~~~~~~~~------~~~-------~~~~-~~l~~ll~~~--~~~~~~iVF~~s~~~~~~l 379 (652)
.. .... ..+....+. ... .... .++..++..+ ...+++||||.++.+|+.+
T Consensus 635 ~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i 714 (1123)
T PRK11448 635 QEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMV 714 (1123)
T ss_pred cccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHH
Confidence 00 0000 000000000 000 0000 1112222222 1247999999999999988
Q ss_pred HHhcC-------------CCcccccccchHHHHHHHhhhcCCCc-eEEEEccccccCCCCCCccEEEEcCCCCCHHHHHH
Q 006272 380 ADLLP-------------GARALHGDIQQSQREVTLAGFRSGKF-MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445 (652)
Q Consensus 380 ~~~l~-------------~~~~lh~~~~~~~R~~~~~~f~~g~~-~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~q 445 (652)
++.|. .+..+||+++ ++..+++.|+++.. .|||+++++.+|+|+|.|++||++.++.|...|+|
T Consensus 715 ~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~Q 792 (1123)
T PRK11448 715 VRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQ 792 (1123)
T ss_pred HHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHH
Confidence 87654 2335777775 56789999999876 68999999999999999999999999999999999
Q ss_pred HhhhcccCC
Q 006272 446 RSGRTGRAG 454 (652)
Q Consensus 446 r~GR~gR~g 454 (652)
|+||+.|.-
T Consensus 793 mIGRgtR~~ 801 (1123)
T PRK11448 793 MLGRATRLC 801 (1123)
T ss_pred HHhhhccCC
Confidence 999999963
No 104
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.8e-24 Score=224.63 Aligned_cols=298 Identities=18% Similarity=0.224 Sum_probs=197.0
Q ss_pred HHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH-HHhc-C
Q 006272 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGG-A 213 (652)
Q Consensus 136 Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~-~~~~-~ 213 (652)
-++.+.+|..+--||||+.||||||+..-..+++.-...... ....-+-|..|.|--|..+++... .++. .
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~-------~~~gmIGITqPRRVAaiamAkRVa~EL~~~~ 333 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQS-------SSPGMIGITQPRRVAAIAMAKRVAFELGVLG 333 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccC-------CCCCeeeecCchHHHHHHHHHHHHHHhccCc
Confidence 345667777888899999999999996555555544332211 112257788999976665554432 2332 1
Q ss_pred CCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhc-----CcHHHHHHHHHh
Q 006272 214 VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM-----GFVEDVELILGK 288 (652)
Q Consensus 214 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~-----gf~~~~~~i~~~ 288 (652)
..+....-+.+ .......|.++|.|.|+..+.++.+ |..++.|||||||.-.-. |....+-.|...
T Consensus 334 ~eVsYqIRfd~--------ti~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 334 SEVSYQIRFDG--------TIGEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred cceeEEEEecc--------ccCCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccchHHHHHHHHHHHHHHHHH
Confidence 12222222322 2234578999999999999987655 899999999999974211 112222222222
Q ss_pred ccC----CCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCc---hhhhhhHHHHHHhhC
Q 006272 289 VED----ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS---SARSQVIPDIIRCYS 361 (652)
Q Consensus 289 ~~~----~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ll~~~~ 361 (652)
+.. -.+.++|+||||+.-....-.++.+...+..|.+...+ .... | |+--..+. .+.+...+.|...+
T Consensus 405 ~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQ-fPVs--I-HF~krT~~DYi~eAfrKtc~IH~kL- 479 (1172)
T KOG0926|consen 405 YYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQ-FPVS--I-HFNKRTPDDYIAEAFRKTCKIHKKL- 479 (1172)
T ss_pred HhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeeccc-CceE--E-EeccCCCchHHHHHHHHHHHHhhcC-
Confidence 211 12578999999986443333345554555555554332 1111 1 11111111 23445556666666
Q ss_pred CCCeEEEEecchhHHHHHHHhcC---------------------------------------------------------
Q 006272 362 SGGRTIIFTETKESASQLADLLP--------------------------------------------------------- 384 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~--------------------------------------------------------- 384 (652)
+.|.+|||+....++++|+..|+
T Consensus 480 P~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~ 559 (1172)
T KOG0926|consen 480 PPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDS 559 (1172)
T ss_pred CCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcc
Confidence 77899999999999999998882
Q ss_pred ----------------------------------------------CCcccccccchHHHHHHHhhhcCCCceEEEEccc
Q 006272 385 ----------------------------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418 (652)
Q Consensus 385 ----------------------------------------------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~ 418 (652)
.|.+|++-|+...+.++++.-..|..-|+|||+|
T Consensus 560 ~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNV 639 (1172)
T KOG0926|consen 560 GFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNV 639 (1172)
T ss_pred cchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccc
Confidence 1345788899999999999999999999999999
Q ss_pred cccCCCCCCccEEEEcCCC------------------CCHHHHHHHhhhcccCC
Q 006272 419 AARGLDINDVQLIIQCEPP------------------RDVEAYIHRSGRTGRAG 454 (652)
Q Consensus 419 ~~~Gldi~~v~~VI~~~~p------------------~s~~~y~qr~GR~gR~g 454 (652)
|+..|.||+|.+||+.+.- .|.++--||+|||||.|
T Consensus 640 AETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg 693 (1172)
T KOG0926|consen 640 AETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG 693 (1172)
T ss_pred hhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC
Confidence 9999999999999986543 25667789999999998
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=3.4e-23 Score=233.03 Aligned_cols=312 Identities=22% Similarity=0.251 Sum_probs=207.0
Q ss_pred ChHHHHHHHHHHhcC---C-cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHH
Q 006272 132 LFPIQAMTFDMVLDG---S-DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (652)
Q Consensus 132 ~~~~Q~~~i~~~l~~---~-dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 207 (652)
.++.|..++..++.. . .+++.||||+|||++.+++++..+.... ....+++++.|++.+++++++.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~---------~~~~r~i~vlP~~t~ie~~~~r~ 266 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI---------KLKSRVIYVLPFRTIIEDMYRRA 266 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc---------cccceEEEEccHHHHHHHHHHHH
Confidence 488999999888743 4 7899999999999999999988776631 13457999999999999999999
Q ss_pred HHHhcCCCceEEEEeCCcchHHHHHH-----h---------cCCCcEEEeCcHHHHHHHHh-CCcC-C--CCceEEecCc
Q 006272 208 DVYGGAVGLTSCCLYGGAPYHAQEFK-----L---------KKGIDVVIGTPGRIKDHIER-GNID-L--SSLKFRVLDE 269 (652)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~~-----~---------~~~~~Ilv~Tp~rl~~~l~~-~~~~-l--~~~~~lViDE 269 (652)
+.+.....+......+.......... . ..-..+.++||-.+...... ..+. + -..+.+||||
T Consensus 267 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE 346 (733)
T COG1203 267 KEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDE 346 (733)
T ss_pred HhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhcc
Confidence 98765443332212222221111100 0 01134555555555442211 1111 1 1247899999
Q ss_pred chhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchh-
Q 006272 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA- 348 (652)
Q Consensus 270 ah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 348 (652)
+|.+.+......+..++..+... ...+|+||||+|+.........+....................+.+....+....
T Consensus 347 ~h~~~~~~~~~~l~~~i~~l~~~-g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 425 (733)
T COG1203 347 VHLYADETMLAALLALLEALAEA-GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGP 425 (733)
T ss_pred HHhhcccchHHHHHHHHHHHHhC-CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhh
Confidence 99887663444555555555433 5789999999999998888887744333322211000000111111111110000
Q ss_pred hhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC---C-CcccccccchHHHHHHHhhh----cCCCceEEEEccccc
Q 006272 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---G-ARALHGDIQQSQREVTLAGF----RSGKFMTLVATNVAA 420 (652)
Q Consensus 349 ~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~---~-~~~lh~~~~~~~R~~~~~~f----~~g~~~vLvaT~~~~ 420 (652)
.......+......+.+++|.|||+..|.+++..|+ . +..+||.+...+|.+.++.+ ..+...|+|||++.+
T Consensus 426 ~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIE 505 (733)
T COG1203 426 QEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIE 505 (733)
T ss_pred hHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEE
Confidence 012334444455678999999999999999999998 3 88999999999999887754 457889999999999
Q ss_pred cCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCc
Q 006272 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456 (652)
Q Consensus 421 ~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~ 456 (652)
.|||+ +.+++|-=-.| +.+.+||+||++|.|..
T Consensus 506 agvDi-dfd~mITe~aP--idSLIQR~GRv~R~g~~ 538 (733)
T COG1203 506 AGVDI-DFDVLITELAP--IDSLIQRAGRVNRHGKK 538 (733)
T ss_pred EEecc-ccCeeeecCCC--HHHHHHHHHHHhhcccc
Confidence 99999 48888764444 89999999999999954
No 106
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=5.3e-23 Score=211.44 Aligned_cols=294 Identities=19% Similarity=0.192 Sum_probs=208.6
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH--
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-- 208 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~-- 208 (652)
..+++-.+.+.++..++-+||.+.||||||+.....+.+.-+.. .+-.+-+..|.|--|..|+....
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk-----------~gk~IgcTQPRRVAAmSVAaRVA~E 333 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTK-----------GGKKIGCTQPRRVAAMSVAARVAEE 333 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccccc-----------CCceEeecCcchHHHHHHHHHHHHH
Confidence 34566677888888999999999999999994333333322221 12237889999988877765553
Q ss_pred ---HHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhc-C-cHHHHH
Q 006272 209 ---VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM-G-FVEDVE 283 (652)
Q Consensus 209 ---~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~-g-f~~~~~ 283 (652)
+++..+|+++.. .......+-|-++|.|.|+..+.... +|..+++|||||||.-.-. . ....+.
T Consensus 334 MgvkLG~eVGYsIRF----------EdcTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvK 402 (902)
T KOG0923|consen 334 MGVKLGHEVGYSIRF----------EDCTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVK 402 (902)
T ss_pred hCcccccccceEEEe----------ccccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHH
Confidence 344445555443 11223347789999999999887644 5899999999999963211 1 233444
Q ss_pred HHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhH-HHHHHh--h
Q 006272 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI-PDIIRC--Y 360 (652)
Q Consensus 284 ~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~--~ 360 (652)
.|....| ..++++.|||+... -+..|+ .+...+.+.+ ....+..+|..++..+-++.. ..+++. .
T Consensus 403 DIar~Rp---dLKllIsSAT~DAe---kFS~fF-DdapIF~iPG-----RRyPVdi~Yt~~PEAdYldAai~tVlqIH~t 470 (902)
T KOG0923|consen 403 DIARFRP---DLKLLISSATMDAE---KFSAFF-DDAPIFRIPG-----RRYPVDIFYTKAPEADYLDAAIVTVLQIHLT 470 (902)
T ss_pred HHHhhCC---cceEEeeccccCHH---HHHHhc-cCCcEEeccC-----cccceeeecccCCchhHHHHHHhhheeeEec
Confidence 5554443 67899999999753 344555 3444443332 234566677777776655443 333322 2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-------------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCC
Q 006272 361 SSGGRTIIFTETKESASQLADLLP-------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427 (652)
Q Consensus 361 ~~~~~~iVF~~s~~~~~~l~~~l~-------------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~ 427 (652)
.+.+-+|||....++.+.....|. -+.++|+.|++..+..|++.-..|..+|++||++|+..|.|++
T Consensus 471 qp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdg 550 (902)
T KOG0923|consen 471 QPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDG 550 (902)
T ss_pred cCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecC
Confidence 467899999999988877666664 3678999999999999999999999999999999999999999
Q ss_pred ccEEEEcCC------------------CCCHHHHHHHhhhcccCCCcccc
Q 006272 428 VQLIIQCEP------------------PRDVEAYIHRSGRTGRAGVEAAE 459 (652)
Q Consensus 428 v~~VI~~~~------------------p~s~~~y~qr~GR~gR~g~~~~~ 459 (652)
|.+||+-++ |-|.++..||+|||||.| +|.|
T Consensus 551 I~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKC 599 (902)
T KOG0923|consen 551 IKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKC 599 (902)
T ss_pred eEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCce
Confidence 999997553 458889999999999998 4443
No 107
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.91 E-value=6.7e-23 Score=231.83 Aligned_cols=311 Identities=16% Similarity=0.240 Sum_probs=204.2
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l----~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.+.|+|.+.+.+++ .+.+.|++..+|.|||+..+.. +..+.... .....+|||||. .|..||.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~---------~~~gp~LIVvP~-SlL~nW~~E 237 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYR---------GITGPHMVVAPK-STLGNWMNE 237 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhc---------CCCCCEEEEeCh-HHHHHHHHH
Confidence 78999999998875 5778999999999999975433 33333211 111247999996 778899999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHH---hcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHH
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFK---LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~---~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~ 283 (652)
+.+++ ..+.+..++|.......... .....+|+|+|++.+..... .+.--++.+|||||||++-+.. ..+.
T Consensus 238 i~kw~--p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~--Skls 311 (1033)
T PLN03142 238 IRRFC--PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNEN--SLLS 311 (1033)
T ss_pred HHHHC--CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHH--HHHH
Confidence 99987 34666777775543322211 12458999999999876432 2223457899999999986532 3344
Q ss_pred HHHHhccCCCCceEEEEcccCCh-HHHHH---H-------------------------------------HHhc-c----
Q 006272 284 LILGKVEDANKVQTLLFSATLPS-WVKHI---S-------------------------------------TKFL-K---- 317 (652)
Q Consensus 284 ~i~~~~~~~~~~q~l~~SAT~~~-~~~~~---~-------------------------------------~~~~-~---- 317 (652)
..+..+. ....+++|+|+-. .+..+ + ..++ +
T Consensus 312 kalr~L~---a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~Ks 388 (1033)
T PLN03142 312 KTMRLFS---TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKS 388 (1033)
T ss_pred HHHHHhh---cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHH
Confidence 4555554 3457899999311 11000 0 0000 0
Q ss_pred -----cCCeEEEEc--cCcc---c-------------cc---CC---C----c----eEEEc---------------cCC
Q 006272 318 -----SDKKTIDLV--GNEK---M-------------KA---ST---N----V----RHIVL---------------PCS 345 (652)
Q Consensus 318 -----~~~~~i~~~--~~~~---~-------------~~---~~---~----~----~~~~~---------------~~~ 345 (652)
.++....++ .... . .. .. + + .|-++ .+.
T Consensus 389 dV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie 468 (1033)
T PLN03142 389 DVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVE 468 (1033)
T ss_pred HHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhh
Confidence 000000000 0000 0 00 00 0 0 00000 001
Q ss_pred chhhhhhHHHHHHhh-CCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCC---CceEEEEcc
Q 006272 346 SSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG---KFMTLVATN 417 (652)
Q Consensus 346 ~~~~~~~l~~ll~~~-~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g---~~~vLvaT~ 417 (652)
...|+.+|..++..+ ..+.++|||+........|..+|. ....+||.++..+|..+++.|... .+.+|++|.
T Consensus 469 ~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTr 548 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTR 548 (1033)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecc
Confidence 234555555555543 356799999999999999888875 567899999999999999999753 346789999
Q ss_pred ccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCccccee
Q 006272 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETI 461 (652)
Q Consensus 418 ~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i 461 (652)
+++.|||+..+++||+||+|+++..+.|++||+.|.|....+.|
T Consensus 549 AGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~V 592 (1033)
T PLN03142 549 AGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQV 592 (1033)
T ss_pred ccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEE
Confidence 99999999999999999999999999999999999997754444
No 108
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=5.2e-22 Score=204.49 Aligned_cols=300 Identities=17% Similarity=0.219 Sum_probs=205.1
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHH
Q 006272 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (652)
Q Consensus 128 g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 207 (652)
.+...+..+.+.+..|..++-||+.+.||||||+.....+++.-+ ....-+-+..|.|.-|..++..+
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY------------~~~GmIGcTQPRRvAAiSVAkrV 420 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGY------------ADNGMIGCTQPRRVAAISVAKRV 420 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccc------------ccCCeeeecCchHHHHHHHHHHH
Confidence 444567788889999999999999999999999965444443322 22335778889999888887766
Q ss_pred H-HH----hcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhh-hcC-cHH
Q 006272 208 D-VY----GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML-RMG-FVE 280 (652)
Q Consensus 208 ~-~~----~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l-~~g-f~~ 280 (652)
. .+ +...|+.+.. . ..-...+.|-++|.|.|+.....+. .|.++++||+||||.-. +.. ..-
T Consensus 421 a~EM~~~lG~~VGYsIRF--E--------dvT~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfG 489 (1042)
T KOG0924|consen 421 AEEMGVTLGDTVGYSIRF--E--------DVTSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFG 489 (1042)
T ss_pred HHHhCCccccccceEEEe--e--------ecCCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHH
Confidence 4 33 3333333322 1 1112336799999999988765544 37889999999999642 111 112
Q ss_pred HHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhh-hHHHHHHh
Q 006272 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ-VIPDIIRC 359 (652)
Q Consensus 281 ~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ll~~ 359 (652)
.+..++... .+.++|++||||.. ..+ ..|+. +.+.+.+.+.. ..+..++...+-.+-.. .+...+..
T Consensus 490 llk~~larR---rdlKliVtSATm~a--~kf-~nfFg-n~p~f~IpGRT-----yPV~~~~~k~p~eDYVeaavkq~v~I 557 (1042)
T KOG0924|consen 490 LLKKVLARR---RDLKLIVTSATMDA--QKF-SNFFG-NCPQFTIPGRT-----YPVEIMYTKTPVEDYVEAAVKQAVQI 557 (1042)
T ss_pred HHHHHHHhh---ccceEEEeeccccH--HHH-HHHhC-CCceeeecCCc-----cceEEEeccCchHHHHHHHHhhheEe
Confidence 223333332 26799999999975 333 44552 34444443332 34445555444444332 23333322
Q ss_pred h--CCCCeEEEEecchhHHHHHHHhcC--------------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCC
Q 006272 360 Y--SSGGRTIIFTETKESASQLADLLP--------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (652)
Q Consensus 360 ~--~~~~~~iVF~~s~~~~~~l~~~l~--------------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gl 423 (652)
+ ...+-+|||....+.++-.+..+. .+.++++.|++.-+.++++.-..|..+|||||++|+..|
T Consensus 558 hl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSL 637 (1042)
T KOG0924|consen 558 HLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSL 637 (1042)
T ss_pred eccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhce
Confidence 2 355889999998887766665543 467899999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCC------------------CCCHHHHHHHhhhcccCCCcccceeec
Q 006272 424 DINDVQLIIQCEP------------------PRDVEAYIHRSGRTGRAGVEAAETITQ 463 (652)
Q Consensus 424 di~~v~~VI~~~~------------------p~s~~~y~qr~GR~gR~g~~~~~~i~~ 463 (652)
.+|++.+||+.++ |.|-+...||+|||||.| +|.|+=++
T Consensus 638 Ti~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlY 694 (1042)
T KOG0924|consen 638 TIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLY 694 (1042)
T ss_pred eecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeeh
Confidence 9999999998653 668889999999999998 44444333
No 109
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.88 E-value=2.1e-21 Score=213.28 Aligned_cols=300 Identities=21% Similarity=0.277 Sum_probs=210.3
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH-H
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-V 209 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~-~ 209 (652)
..+..+.+.|.++.+++.+++++.||+|||+.....+++...... ....+++..|.|--|.-+++++. +
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~----------~~~~IicTQPRRIsAIsvAeRVa~E 242 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG----------AACNIICTQPRRISAISVAERVAKE 242 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC----------CCCeEEecCCchHHHHHHHHHHHHH
Confidence 456778888999999999999999999999987777887765543 23458999999988888887764 3
Q ss_pred HhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhh-cCcHHHH-HHHHH
Q 006272 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDV-ELILG 287 (652)
Q Consensus 210 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~-~gf~~~~-~~i~~ 287 (652)
.+...+-.|..-.+.. ........+++||.|.|++.+..+. .+.++.+||+||+|+-.- ..|.-.+ +.++.
T Consensus 243 R~~~~g~~VGYqvrl~------~~~s~~t~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHER~i~~DflLi~lk~lL~ 315 (924)
T KOG0920|consen 243 RGESLGEEVGYQVRLE------SKRSRETRLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHERSINTDFLLILLKDLLP 315 (924)
T ss_pred hccccCCeeeEEEeee------cccCCceeEEEecHHHHHHHhccCc-ccccCceeeeeeEEEccCCcccHHHHHHHHhh
Confidence 3333443333222211 1122347899999999999998744 489999999999997532 2343333 33333
Q ss_pred hccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccC--------------CCceEEE-----------c
Q 006272 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS--------------TNVRHIV-----------L 342 (652)
Q Consensus 288 ~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------~~~~~~~-----------~ 342 (652)
.. +..++|+||||+.. .....|+ .....+.+.+..-+... ....+.. +
T Consensus 316 ~~---p~LkvILMSAT~da---e~fs~YF-~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (924)
T KOG0920|consen 316 RN---PDLKVILMSATLDA---ELFSDYF-GGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARL 388 (924)
T ss_pred hC---CCceEEEeeeecch---HHHHHHh-CCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccc
Confidence 33 37899999999974 4456666 35555555443211100 0000000 0
Q ss_pred -cCCchhhhhhHHHHHHhh---CCCCeEEEEecchhHHHHHHHhcC-----------CCcccccccchHHHHHHHhhhcC
Q 006272 343 -PCSSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP-----------GARALHGDIQQSQREVTLAGFRS 407 (652)
Q Consensus 343 -~~~~~~~~~~l~~ll~~~---~~~~~~iVF~~s~~~~~~l~~~l~-----------~~~~lh~~~~~~~R~~~~~~f~~ 407 (652)
.....-...++..++... ...+.+|||.+...++..+.+.|. .+.++|+.|+..++..++.....
T Consensus 389 ~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~ 468 (924)
T KOG0920|consen 389 KLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPK 468 (924)
T ss_pred hhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCC
Confidence 001112233444444332 356899999999999999999885 35689999999999999999999
Q ss_pred CCceEEEEccccccCCCCCCccEEEEc--------CCCC----------CHHHHHHHhhhcccCC
Q 006272 408 GKFMTLVATNVAARGLDINDVQLIIQC--------EPPR----------DVEAYIHRSGRTGRAG 454 (652)
Q Consensus 408 g~~~vLvaT~~~~~Gldi~~v~~VI~~--------~~p~----------s~~~y~qr~GR~gR~g 454 (652)
|..+||+||++|+..|.|++|-+||+. |+-. |...-.||.|||||.-
T Consensus 469 g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~ 533 (924)
T KOG0920|consen 469 GTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR 533 (924)
T ss_pred CcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc
Confidence 999999999999999999999999974 4322 5667789999999974
No 110
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.87 E-value=4.4e-20 Score=212.38 Aligned_cols=349 Identities=17% Similarity=0.186 Sum_probs=212.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHH----HHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEE
Q 006272 116 ISVPLREKLKSKGIESLFPIQAMTFD----MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191 (652)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~----~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~l 191 (652)
+++.+...+...||+ ++|.|.+.+. .+..++++++.||||+|||++|++|++.....+ .+++
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~-------------~~vv 296 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITE-------------KPVV 296 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCC-------------CeEE
Confidence 455677788888986 8899998665 555789999999999999999999998766521 1599
Q ss_pred EEeccHHHHHHHHH-HHHHHhcCCC--ceEEEEeCCcchHH---------------HH----------------------
Q 006272 192 VLLPTRELAKQVHE-DFDVYGGAVG--LTSCCLYGGAPYHA---------------QE---------------------- 231 (652)
Q Consensus 192 il~PtreLa~q~~~-~~~~~~~~~~--~~~~~~~gg~~~~~---------------~~---------------------- 231 (652)
|.+||++|..|+.. ++..+.+..+ +++..+.|...+-- ..
T Consensus 297 i~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el 376 (850)
T TIGR01407 297 ISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDEL 376 (850)
T ss_pred EEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhc
Confidence 99999999999865 5665554433 66666666553200 00
Q ss_pred ----------------------------------HHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC
Q 006272 232 ----------------------------------FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277 (652)
Q Consensus 232 ----------------------------------~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g 277 (652)
+.....++|||+...-|+..+......+....+|||||||++.+..
T Consensus 377 ~~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a 456 (850)
T TIGR01407 377 NLKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIA 456 (850)
T ss_pred cCCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHH
Confidence 0001136899999998888775543335666899999999975310
Q ss_pred -------c-----HHHHH-------------------------------------------------------------H
Q 006272 278 -------F-----VEDVE-------------------------------------------------------------L 284 (652)
Q Consensus 278 -------f-----~~~~~-------------------------------------------------------------~ 284 (652)
+ ...+. .
T Consensus 457 ~~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 536 (850)
T TIGR01407 457 ENQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQ 536 (850)
T ss_pred HHHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 0 00000 0
Q ss_pred ---HHHh-----------c----------c-----C--------------------CCCceEEEEcccCChH-HHHHHHH
Q 006272 285 ---ILGK-----------V----------E-----D--------------------ANKVQTLLFSATLPSW-VKHISTK 314 (652)
Q Consensus 285 ---i~~~-----------~----------~-----~--------------------~~~~q~l~~SAT~~~~-~~~~~~~ 314 (652)
.+.. + . . .....+|++|||++.. -......
T Consensus 537 l~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~ 616 (850)
T TIGR01407 537 LRKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQ 616 (850)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHH
Confidence 0000 0 0 0 0124678999999731 1223333
Q ss_pred hcccC-CeEEEEccCcccccCCCceEEEccC--------CchhhhhhHHHHH-Hhh-CCCCeEEEEecchhHHHHHHHhc
Q 006272 315 FLKSD-KKTIDLVGNEKMKASTNVRHIVLPC--------SSSARSQVIPDII-RCY-SSGGRTIIFTETKESASQLADLL 383 (652)
Q Consensus 315 ~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~ll-~~~-~~~~~~iVF~~s~~~~~~l~~~l 383 (652)
.+... .....+. ........+ ...+++. +.......+...+ ... ...+++|||++|....+.++..|
T Consensus 617 ~lGl~~~~~~~~~-~spf~~~~~-~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L 694 (850)
T TIGR01407 617 LLGLTDVHFNTIE-PTPLNYAEN-QRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDML 694 (850)
T ss_pred hcCCCccccceec-CCCCCHHHc-CEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHH
Confidence 33221 1111111 000000111 1222211 1111122222222 211 24579999999999999999887
Q ss_pred CC------CcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCcc--EEEEcCCCC----C------------
Q 006272 384 PG------ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ--LIIQCEPPR----D------------ 439 (652)
Q Consensus 384 ~~------~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~--~VI~~~~p~----s------------ 439 (652)
.. ...+..+.. ..|..+++.|++++..||+||+.+.+|||+|+.. +||...+|. +
T Consensus 695 ~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~ 773 (850)
T TIGR01407 695 NELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQ 773 (850)
T ss_pred hhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 52 333444433 5789999999999999999999999999999876 566666553 1
Q ss_pred --------------HHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHh
Q 006272 440 --------------VEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLN 481 (652)
Q Consensus 440 --------------~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~ 481 (652)
...+.|.+||.=|...+.+.++++-..-....|...+-..+.
T Consensus 774 ~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 774 EGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred hcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 123568899999998776554444333344445444444443
No 111
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=7e-21 Score=209.00 Aligned_cols=120 Identities=23% Similarity=0.272 Sum_probs=101.4
Q ss_pred hhhhhhHHHHHHh-hCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEcccccc
Q 006272 347 SARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (652)
Q Consensus 347 ~~~~~~l~~ll~~-~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 421 (652)
..|...+...+.. ...+.++||||+|+..++.|+..|. ....||+ .+.+|+..+..|..+...|+|||++|+|
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 4566666666643 4467899999999999999999997 5667886 6889999999999999999999999999
Q ss_pred CCCCC---Ccc-----EEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcc
Q 006272 422 GLDIN---DVQ-----LIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSV 468 (652)
Q Consensus 422 Gldi~---~v~-----~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~ 468 (652)
|+||+ .|. +||++..|.|...|.||+|||||.|.+|.+..++..++.
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999 564 459999999999999999999999999887665554443
No 112
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.86 E-value=2e-20 Score=199.88 Aligned_cols=159 Identities=19% Similarity=0.114 Sum_probs=115.7
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.|-.||.+.+..+-.+..++++|||.+|||.+-...+-..+.... .-.+|+++||.+|++|+...+...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD-----------~~VVIyvaPtKaLVnQvsa~VyaR 579 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESD-----------SDVVIYVAPTKALVNQVSANVYAR 579 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcC-----------CCEEEEecchHHHhhhhhHHHHHh
Confidence 478899999999999999999999999999875555444444332 225899999999999999888765
Q ss_pred hcC-CCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHh---CCcCCCCceEEecCcchhhhhcCcHHHHHHHH
Q 006272 211 GGA-VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER---GNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (652)
Q Consensus 211 ~~~-~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~---~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~ 286 (652)
... +-.....+.|....+.+.. .-.++|+|+-|+.+-.+|.. .......++++|+||+|.+....-.--++.++
T Consensus 580 F~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll 657 (1330)
T KOG0949|consen 580 FDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLL 657 (1330)
T ss_pred hccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHH
Confidence 532 2233344444443333222 12489999999999998876 34457889999999999987655344445555
Q ss_pred HhccCCCCceEEEEcccCCh
Q 006272 287 GKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 287 ~~~~~~~~~q~l~~SAT~~~ 306 (652)
-.. ++.++.+|||+.+
T Consensus 658 ~li----~CP~L~LSATigN 673 (1330)
T KOG0949|consen 658 LLI----PCPFLVLSATIGN 673 (1330)
T ss_pred Hhc----CCCeeEEecccCC
Confidence 444 5789999999865
No 113
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=3.4e-20 Score=201.86 Aligned_cols=310 Identities=23% Similarity=0.292 Sum_probs=211.7
Q ss_pred CCChHHHHHHHHHHhcC----CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVLDG----SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~~----~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~ 205 (652)
..+++-|+.++..+... +..++.+.||||||.+|+-.+-+.|..++ ++|||+|-.+|-.|+.+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk-------------qvLvLVPEI~Ltpq~~~ 263 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK-------------QVLVLVPEIALTPQLLA 263 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC-------------EEEEEeccccchHHHHH
Confidence 35678899999998755 67999999999999999988888887754 59999999999999999
Q ss_pred HHHHHhcCCCceEEEEeCCcc----hHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhh---hcC-
Q 006272 206 DFDVYGGAVGLTSCCLYGGAP----YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML---RMG- 277 (652)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~----~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l---~~g- 277 (652)
.|+..+. .++..++.+.+ +..+.+.......|+|+|--.|. .-+.++.+|||||=|.-. +.+
T Consensus 264 rf~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~p 333 (730)
T COG1198 264 RFKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGP 333 (730)
T ss_pred HHHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCC
Confidence 9987643 45555555554 44444555678999999954442 247899999999999532 111
Q ss_pred --cHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhh-----h
Q 006272 278 --FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR-----S 350 (652)
Q Consensus 278 --f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 350 (652)
+..++........ ++++|+-|||..-+-...+ .......+.+.........+.+.-+.+....... .
T Consensus 334 rYhARdvA~~Ra~~~---~~pvvLgSATPSLES~~~~---~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~ 407 (730)
T COG1198 334 RYHARDVAVLRAKKE---NAPVVLGSATPSLESYANA---ESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSP 407 (730)
T ss_pred CcCHHHHHHHHHHHh---CCCEEEecCCCCHHHHHhh---hcCceEEEEccccccccCCCcceEEeccccccccCccCCH
Confidence 3455555555543 6889999999765433322 2222344444443332223344433333222222 3
Q ss_pred hhHHHHHHhhCCCCeEEEEecchhHH------------------------------------------------------
Q 006272 351 QVIPDIIRCYSSGGRTIIFTETKESA------------------------------------------------------ 376 (652)
Q Consensus 351 ~~l~~ll~~~~~~~~~iVF~~s~~~~------------------------------------------------------ 376 (652)
.++..+-..+..+.++|+|.|.+--+
T Consensus 408 ~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~ 487 (730)
T COG1198 408 ALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLR 487 (730)
T ss_pred HHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeE
Confidence 34555555666788999998865543
Q ss_pred ----------HHHHHhcC--CCcccccccchHH--HHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCC-----
Q 006272 377 ----------SQLADLLP--GARALHGDIQQSQ--REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP----- 437 (652)
Q Consensus 377 ----------~~l~~~l~--~~~~lh~~~~~~~--R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p----- 437 (652)
+.|...|. .+..+.++.+... -+..+..|.+|+.+|||.|++++.|.|+|+|++|...|..
T Consensus 488 ~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~ 567 (730)
T COG1198 488 AVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGS 567 (730)
T ss_pred EecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcC
Confidence 22222222 2333444444333 3567899999999999999999999999999997765432
Q ss_pred -C------CHHHHHHHhhhcccCCCcccceeeccCCcc
Q 006272 438 -R------DVEAYIHRSGRTGRAGVEAAETITQVSDSV 468 (652)
Q Consensus 438 -~------s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~ 468 (652)
. ....+.|-+|||||.+..+..+|-...+++
T Consensus 568 ~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 568 PDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred CCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 1 455678999999999999888887777664
No 114
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.86 E-value=1.6e-19 Score=198.87 Aligned_cols=125 Identities=28% Similarity=0.422 Sum_probs=102.6
Q ss_pred hhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCC
Q 006272 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426 (652)
Q Consensus 351 ~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~ 426 (652)
.++..+......+.++||||+|+..++.|+..|. .+..+|+++++.+|..++..|+.|.+.|||||+++++|+|+|
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 3444444444567899999999999999999997 567899999999999999999999999999999999999999
Q ss_pred CccEEEEcC-----CCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHH
Q 006272 427 DVQLIIQCE-----PPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEE 478 (652)
Q Consensus 427 ~v~~VI~~~-----~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~ 478 (652)
++++||++| .|.+..+|+||+|||||. ..|. ++++.+ .....+...+.+
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~-vi~~~~-~~~~~~~~ai~~ 563 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGK-VIMYAD-KITDSMQKAIEE 563 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCE-EEEEEc-CCCHHHHHHHHH
Confidence 999999988 899999999999999998 3443 444444 333344444443
No 115
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.84 E-value=3e-19 Score=170.91 Aligned_cols=179 Identities=41% Similarity=0.620 Sum_probs=148.1
Q ss_pred HCCCCCChHHHHHHHHHHhcC-CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHH
Q 006272 126 SKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (652)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~~l~~-~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~ 204 (652)
..++..|+++|.++++.++.. +.+++.++||||||.++..++++.+.... ...+||++|++.++.|+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----------~~~~l~~~p~~~~~~~~~ 71 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-----------GKRVLVLVPTRELAEQWA 71 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-----------CCcEEEEeCCHHHHHHHH
Confidence 356788999999999999988 99999999999999999999998887642 124999999999999999
Q ss_pred HHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCC-cEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHH
Q 006272 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI-DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (652)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~-~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~ 283 (652)
..+..+............++.........+.... +|+++|++.+.+.+.........+++||+||||.+....+...+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 151 (201)
T smart00487 72 EELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLE 151 (201)
T ss_pred HHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHH
Confidence 9999887655534555555555444455555555 999999999999998877677889999999999998667888888
Q ss_pred HHHHhccCCCCceEEEEcccCChHHHHHHHHhcc
Q 006272 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLK 317 (652)
Q Consensus 284 ~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~ 317 (652)
.++..++. ..+++++|||++.........++.
T Consensus 152 ~~~~~~~~--~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 152 KLLKLLPK--NVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred HHHHhCCc--cceEEEEecCCchhHHHHHHHhcC
Confidence 88888844 679999999999888888888874
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=1.3e-18 Score=186.24 Aligned_cols=319 Identities=20% Similarity=0.231 Sum_probs=205.4
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
+|+ .|+++|.-..-.++.|+ |+...||+|||++..+|++.....+. .+.|++|+.-||.|-+++
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~-------------~VhvvT~NdyLA~RDae~ 138 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGR-------------RVHVITVNDYLARRDAEW 138 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCC-------------CeEEEcCCHHHHHHHHHH
Confidence 465 68999999888888775 77999999999999999987776654 389999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHH-HHHHhC------CcCCCCceEEecCcchhhhh----
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK-DHIERG------NIDLSSLKFRVLDEADEMLR---- 275 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~-~~l~~~------~~~l~~~~~lViDEah~~l~---- 275 (652)
+..+...+++++.++.+..+........ .++|+++|..-|- ++|+.+ ......+.+.||||+|.+|-
T Consensus 139 m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeAr 216 (764)
T PRK12326 139 MGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEAL 216 (764)
T ss_pred HHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheecccc
Confidence 9999999999999999987766544444 4899999988762 333221 22346688999999998761
Q ss_pred -----------cCcHHHHHHHHHhccCC------CCceEEEE--------------------------------------
Q 006272 276 -----------MGFVEDVELILGKVEDA------NKVQTLLF-------------------------------------- 300 (652)
Q Consensus 276 -----------~gf~~~~~~i~~~~~~~------~~~q~l~~-------------------------------------- 300 (652)
......+..+...+... .+.+.+.+
T Consensus 217 tPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~ 296 (764)
T PRK12326 217 VPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHA 296 (764)
T ss_pred CceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHH
Confidence 01223333333333221 01112222
Q ss_pred ------------------------------------------------------------------------cccCChHH
Q 006272 301 ------------------------------------------------------------------------SATLPSWV 308 (652)
Q Consensus 301 ------------------------------------------------------------------------SAT~~~~~ 308 (652)
|.|.....
T Consensus 297 l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~ 376 (764)
T PRK12326 297 LLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAG 376 (764)
T ss_pred HHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHH
Confidence 22221111
Q ss_pred HHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhh-hHHHHHHhhCCCCeEEEEecchhHHHHHHHhcCCC-
Q 006272 309 KHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ-VIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA- 386 (652)
Q Consensus 309 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~~~- 386 (652)
..+...|- . ..+ .++..++.........++. ....+.. ++..+...+..+.|+||.|.|.+.++.|+..|...
T Consensus 377 ~Ef~~iY~-l--~Vv-~IPtnkp~~R~d~~d~iy~-t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~g 451 (764)
T PRK12326 377 EQLRQFYD-L--GVS-VIPPNKPNIREDEADRVYA-TAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAG 451 (764)
T ss_pred HHHHHHhC-C--cEE-ECCCCCCceeecCCCceEe-CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCC
Confidence 11111110 0 000 1111111111111111122 2233443 44555566678899999999999999999999843
Q ss_pred ---cccccccchHHHH-HHHhhhcCC-CceEEEEccccccCCCCCC----------c-----cEEEEcCCCCCHHHHHHH
Q 006272 387 ---RALHGDIQQSQRE-VTLAGFRSG-KFMTLVATNVAARGLDIND----------V-----QLIIQCEPPRDVEAYIHR 446 (652)
Q Consensus 387 ---~~lh~~~~~~~R~-~~~~~f~~g-~~~vLvaT~~~~~Gldi~~----------v-----~~VI~~~~p~s~~~y~qr 446 (652)
.+|++.-. .++ .++. ..| .-.|.|||++|+||-||.= | =|||-...|.|...--|-
T Consensus 452 I~h~vLNAk~~--~~EA~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QL 527 (764)
T PRK12326 452 VPAVVLNAKND--AEEARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQL 527 (764)
T ss_pred CcceeeccCch--HhHHHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHH
Confidence 34444422 333 2222 234 3468999999999999862 2 289999999999999999
Q ss_pred hhhcccCCCcccceeec-cCCcchHHH
Q 006272 447 SGRTGRAGVEAAETITQ-VSDSVIPAF 472 (652)
Q Consensus 447 ~GR~gR~g~~~~~~i~~-~~~~~~~~~ 472 (652)
.||+||.|.+|...++. .+++.+..|
T Consensus 528 rGRaGRQGDpGss~f~lSleDdl~~~f 554 (764)
T PRK12326 528 RGRAGRQGDPGSSVFFVSLEDDVVAAN 554 (764)
T ss_pred hcccccCCCCCceeEEEEcchhHHHhc
Confidence 99999999998765544 444444344
No 117
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.82 E-value=6.7e-19 Score=178.14 Aligned_cols=192 Identities=22% Similarity=0.289 Sum_probs=139.0
Q ss_pred CceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecch
Q 006272 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373 (652)
Q Consensus 294 ~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~ 373 (652)
..|++++|||..++-..... ...+..+-.......+.+ .+......-.+++..+......+.++||-+=|+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~------~~vveQiIRPTGLlDP~i---evRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTK 456 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG------GNVVEQIIRPTGLLDPEI---EVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTK 456 (663)
T ss_pred cCCEEEEECCCChHHHHhcc------CceeEEeecCCCCCCCce---eeecCCCcHHHHHHHHHHHHhcCCeEEEEeehH
Confidence 36999999998776543322 111211111111111111 122233344566667766677889999999999
Q ss_pred hHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCC-----CCCHHHHH
Q 006272 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP-----PRDVEAYI 444 (652)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~-----p~s~~~y~ 444 (652)
+.|+.|+++|. .+.++|+++..-+|.+++..++.|.++|||.-+.+-.|||+|.|.+|..+|. .+|-.+.|
T Consensus 457 kmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLI 536 (663)
T COG0556 457 KMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLI 536 (663)
T ss_pred HHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHH
Confidence 99999999998 6889999999999999999999999999999999999999999999998874 56999999
Q ss_pred HHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCcc
Q 006272 445 HRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTE 503 (652)
Q Consensus 445 qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (652)
|-+|||+|.- ..-+++..+...+.+..++.+--.. ..+.-+.++.+|.+.
T Consensus 537 QtIGRAARN~---~GkvIlYAD~iT~sM~~Ai~ET~RR------R~iQ~~yN~~hgItP 586 (663)
T COG0556 537 QTIGRAARNV---NGKVILYADKITDSMQKAIDETERR------REIQMAYNEEHGITP 586 (663)
T ss_pred HHHHHHhhcc---CCeEEEEchhhhHHHHHHHHHHHHH------HHHHHHHHHhcCCCc
Confidence 9999999974 2334555666666676666655433 345556666677654
No 118
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=4e-19 Score=179.85 Aligned_cols=344 Identities=13% Similarity=0.089 Sum_probs=241.5
Q ss_pred HHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHH
Q 006272 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (652)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~ 203 (652)
+..+--+....+|.++|..+-+|+++++.-.|.+||.++|.+.....+...... ..+++.|+.++++..
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s-----------~~~~~~~~~~~~~~~ 347 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHAT-----------NSLLPSEMVEHLRNG 347 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCccc-----------ceecchhHHHHhhcc
Confidence 344455567889999999999999999999999999999999887766554322 369999999999866
Q ss_pred HHHHHHHhc---CCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCC----CCceEEecCcchhhhhc
Q 006272 204 HEDFDVYGG---AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDL----SSLKFRVLDEADEMLRM 276 (652)
Q Consensus 204 ~~~~~~~~~---~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l----~~~~~lViDEah~~l~~ 276 (652)
.+-+.-... ...--++-.+.+.+......-.+.+.+++++.|......+..+.+.+ -.+.+++.||+|.++-.
T Consensus 348 ~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 427 (1034)
T KOG4150|consen 348 SKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP 427 (1034)
T ss_pred CCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc
Confidence 544321111 01122344455555555555556789999999998877665544332 33567899999976522
Q ss_pred C---cHHHHHHHHHhc---cCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCC-----
Q 006272 277 G---FVEDVELILGKV---EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS----- 345 (652)
Q Consensus 277 g---f~~~~~~i~~~~---~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----- 345 (652)
. ....+..++..+ ....+.|++-.|||+.+.++.....+--.....|... ..+..-+++++-.+
T Consensus 428 ~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~D-----GSPs~~K~~V~WNP~~~P~ 502 (1034)
T KOG4150|consen 428 TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTID-----GSPSSEKLFVLWNPSAPPT 502 (1034)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEec-----CCCCccceEEEeCCCCCCc
Confidence 1 122333333332 2334689999999998887665554432222233322 22233344443221
Q ss_pred -chhhhhhH---HHHH-HhhCCCCeEEEEecchhHHHHHHHhcC------------CCcccccccchHHHHHHHhhhcCC
Q 006272 346 -SSARSQVI---PDII-RCYSSGGRTIIFTETKESASQLADLLP------------GARALHGDIQQSQREVTLAGFRSG 408 (652)
Q Consensus 346 -~~~~~~~l---~~ll-~~~~~~~~~iVF~~s~~~~~~l~~~l~------------~~~~lh~~~~~~~R~~~~~~f~~g 408 (652)
...+...+ ..++ .....+-++|-||.+++.|+.+....+ .+..|.|+....+|.++....-.|
T Consensus 503 ~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G 582 (1034)
T KOG4150|consen 503 SKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG 582 (1034)
T ss_pred chhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC
Confidence 12222221 1222 222356799999999999987765544 456789999999999999999999
Q ss_pred CceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHhcc
Q 006272 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNNS 483 (652)
Q Consensus 409 ~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 483 (652)
+..-+|||++++-||||..++.|++.++|.|...+.|..|||||..+....+++........+|......++...
T Consensus 583 ~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~p 657 (1034)
T KOG4150|consen 583 KLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSP 657 (1034)
T ss_pred eeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCC
Confidence 999999999999999999999999999999999999999999999999988888777777788887777666543
No 119
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.2e-18 Score=173.83 Aligned_cols=307 Identities=18% Similarity=0.204 Sum_probs=209.4
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
.+.|...+.++...+.|++.---..+..+.+.+..+.+++-+++++.||||||...-...++......
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~------------ 91 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL------------ 91 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc------------
Confidence 67889999999999999887655567777788888889999999999999999865555555444322
Q ss_pred CeEEEEeccHHHHHHHHHHHH-----HHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCc
Q 006272 188 PSVLVLLPTRELAKQVHEDFD-----VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~-----~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~ 262 (652)
..+.+..|.|--|.+++.... .++...|+++..-. -...++-+-+||.|.|+.....+.+ +..+
T Consensus 92 ~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEd----------C~~~~T~Lky~tDgmLlrEams~p~-l~~y 160 (699)
T KOG0925|consen 92 TGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFED----------CTSPNTLLKYCTDGMLLREAMSDPL-LGRY 160 (699)
T ss_pred cceeecCchHHHHHHHHHHHHHHhccccchhccccccccc----------cCChhHHHHHhcchHHHHHHhhCcc-cccc
Confidence 137888999987777765543 23333443332110 0011122347888888887776665 8899
Q ss_pred eEEecCcchhhhhc--CcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEE
Q 006272 263 KFRVLDEADEMLRM--GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340 (652)
Q Consensus 263 ~~lViDEah~~l~~--gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 340 (652)
.+||+||||.-.-. -..-.++.++... +..++++||||+.. ...+.|+ .+...+.+.+ ...+..+
T Consensus 161 ~viiLDeahERtlATDiLmGllk~v~~~r---pdLk~vvmSatl~a---~Kfq~yf-~n~Pll~vpg------~~PvEi~ 227 (699)
T KOG0925|consen 161 GVIILDEAHERTLATDILMGLLKEVVRNR---PDLKLVVMSATLDA---EKFQRYF-GNAPLLAVPG------THPVEIF 227 (699)
T ss_pred cEEEechhhhhhHHHHHHHHHHHHHHhhC---CCceEEEeecccch---HHHHHHh-CCCCeeecCC------CCceEEE
Confidence 99999999964211 1122233333333 36899999999854 2345566 4556565543 2345556
Q ss_pred EccCCchhhhhh-HHHHHHh--hCCCCeEEEEecchhHHHHHHHhcC-------------CCcccccccchHHHHHHHhh
Q 006272 341 VLPCSSSARSQV-IPDIIRC--YSSGGRTIIFTETKESASQLADLLP-------------GARALHGDIQQSQREVTLAG 404 (652)
Q Consensus 341 ~~~~~~~~~~~~-l~~ll~~--~~~~~~~iVF~~s~~~~~~l~~~l~-------------~~~~lh~~~~~~~R~~~~~~ 404 (652)
|..-...+.++. +..++.. ....|-+|||....++.+..++.+. .|.+|| +.++..+++.
T Consensus 228 Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep 303 (699)
T KOG0925|consen 228 YTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEP 303 (699)
T ss_pred ecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCC
Confidence 666555555443 3333322 2357899999999999888887765 466777 5555666554
Q ss_pred hcC---C--CceEEEEccccccCCCCCCccEEEEcCC------------------CCCHHHHHHHhhhcccCC
Q 006272 405 FRS---G--KFMTLVATNVAARGLDINDVQLIIQCEP------------------PRDVEAYIHRSGRTGRAG 454 (652)
Q Consensus 405 f~~---g--~~~vLvaT~~~~~Gldi~~v~~VI~~~~------------------p~s~~~y~qr~GR~gR~g 454 (652)
... | ..+|+|+|++++..+.+++|.+||+-++ |.|..+..||.||+||.-
T Consensus 304 ~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~ 376 (699)
T KOG0925|consen 304 APEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 376 (699)
T ss_pred CCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC
Confidence 432 2 3589999999999999999999998554 568899999999999974
No 120
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.81 E-value=1.4e-17 Score=185.09 Aligned_cols=112 Identities=31% Similarity=0.468 Sum_probs=96.2
Q ss_pred hHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCC
Q 006272 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427 (652)
Q Consensus 352 ~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~ 427 (652)
++..+......+.++||||+|+..++.|+..|. .+..+|+++++.+|..++..|+.|.+.|||||+++++|+|+|+
T Consensus 435 L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~ 514 (652)
T PRK05298 435 LLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPE 514 (652)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccC
Confidence 344444444567899999999999999999998 5678999999999999999999999999999999999999999
Q ss_pred ccEEEEcCC-----CCCHHHHHHHhhhcccCCCcccceeeccC
Q 006272 428 VQLIIQCEP-----PRDVEAYIHRSGRTGRAGVEAAETITQVS 465 (652)
Q Consensus 428 v~~VI~~~~-----p~s~~~y~qr~GR~gR~g~~~~~~i~~~~ 465 (652)
+++||++|. |.+..+|+||+|||||. ..| .++++++
T Consensus 515 v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G-~~i~~~~ 555 (652)
T PRK05298 515 VSLVAILDADKEGFLRSERSLIQTIGRAARN-VNG-KVILYAD 555 (652)
T ss_pred CcEEEEeCCcccccCCCHHHHHHHhccccCC-CCC-EEEEEec
Confidence 999999884 78999999999999996 444 3444444
No 121
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.4e-17 Score=180.33 Aligned_cols=284 Identities=23% Similarity=0.329 Sum_probs=192.0
Q ss_pred HHHHHC-CCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHH
Q 006272 122 EKLKSK-GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (652)
Q Consensus 122 ~~l~~~-g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 200 (652)
+.+++. |+ .|+..|.-....++.|++.-+.||||.|||+--++..+..... +-+++||+||+.|+
T Consensus 73 ~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k-------------gkr~yii~PT~~Lv 138 (1187)
T COG1110 73 EFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK-------------GKRVYIIVPTTTLV 138 (1187)
T ss_pred HHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhc-------------CCeEEEEecCHHHH
Confidence 344444 55 8999999999999999999999999999997433333322222 22699999999999
Q ss_pred HHHHHHHHHHhcCCC-ceEEEEeCCc-chHHHH---HHh-cCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhh
Q 006272 201 KQVHEDFDVYGGAVG-LTSCCLYGGA-PYHAQE---FKL-KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (652)
Q Consensus 201 ~q~~~~~~~~~~~~~-~~~~~~~gg~-~~~~~~---~~~-~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l 274 (652)
.|+++.+..++...+ +.+..+|.+. +..... ..+ +...+|+|+|..-|...+.. +.--++++|++|.+|.++
T Consensus 139 ~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 139 RQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred HHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHH
Confidence 999999999987655 5555545444 333222 222 34799999998877665543 111357899999999877
Q ss_pred hcC-----------cHHH-------HHHHHHhcc----------------------CCCCceEEEEcccCChHH--HHHH
Q 006272 275 RMG-----------FVED-------VELILGKVE----------------------DANKVQTLLFSATLPSWV--KHIS 312 (652)
Q Consensus 275 ~~g-----------f~~~-------~~~i~~~~~----------------------~~~~~q~l~~SAT~~~~~--~~~~ 312 (652)
..+ |.+. +..+...+. ....-++++.|||..+.- ..+.
T Consensus 217 kaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~Lf 296 (1187)
T COG1110 217 KASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLF 296 (1187)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHH
Confidence 433 2221 111111111 112358899999975432 2344
Q ss_pred HHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecc---hhHHHHHHHhcC----C
Q 006272 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTET---KESASQLADLLP----G 385 (652)
Q Consensus 313 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s---~~~~~~l~~~l~----~ 385 (652)
+..+.- .+. .......|+...|+.. .-...+..+++.+. .-.|||++. ++.+++|++.|+ +
T Consensus 297 ReLlgF-----evG--~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG--~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~ 364 (1187)
T COG1110 297 RELLGF-----EVG--SGGEGLRNIVDIYVES---ESLEKVVELVKKLG--DGGLIFVPIDYGREKAEELAEYLRSHGIN 364 (1187)
T ss_pred HHHhCC-----ccC--ccchhhhheeeeeccC---ccHHHHHHHHHHhC--CCeEEEEEcHHhHHHHHHHHHHHHhcCce
Confidence 444421 111 1123334566666554 33344556666663 468999999 999999999998 4
Q ss_pred CcccccccchHHHHHHHhhhcCCCceEEEEc----cccccCCCCCC-ccEEEEcCCCC
Q 006272 386 ARALHGDIQQSQREVTLAGFRSGKFMTLVAT----NVAARGLDIND-VQLIIQCEPPR 438 (652)
Q Consensus 386 ~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT----~~~~~Gldi~~-v~~VI~~~~p~ 438 (652)
+..+|+ .....++.|..|+++|||.. .++-||||+|. ++++|.|++|+
T Consensus 365 a~~~~a-----~~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 365 AELIHA-----EKEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred EEEeec-----cchhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 556666 33788999999999999875 57899999995 78999999994
No 122
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=7.2e-18 Score=177.78 Aligned_cols=339 Identities=16% Similarity=0.266 Sum_probs=214.5
Q ss_pred cCCCHHHHHHHHHCCCCCChHHHHHHHHHHh----cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 006272 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (652)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l----~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (652)
|.++..|.. .++|+|++.+.++. ++.--|+-...|-|||...+.. |..|...... .-.
T Consensus 196 ~~vPg~I~~--------~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisF-LaaL~~S~k~---------~~p 257 (923)
T KOG0387|consen 196 FKVPGFIWS--------KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISF-LAALHHSGKL---------TKP 257 (923)
T ss_pred ccccHHHHH--------HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHH-HHHHhhcccc---------cCc
Confidence 556666543 57899999998876 4566899999999999743222 2222221100 014
Q ss_pred EEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHH---------HHH----HhcCCCcEEEeCcHHHHHHHHhCC
Q 006272 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA---------QEF----KLKKGIDVVIGTPGRIKDHIERGN 256 (652)
Q Consensus 190 ~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---------~~~----~~~~~~~Ilv~Tp~rl~~~l~~~~ 256 (652)
+|||||. .++.||..+|..++ ..+++..+++..+... ... ......+|+|+|+..+.-+ ...
T Consensus 258 aLIVCP~-Tii~qW~~E~~~w~--p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~ 332 (923)
T KOG0387|consen 258 ALIVCPA-TIIHQWMKEFQTWW--PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDD 332 (923)
T ss_pred eEEEccH-HHHHHHHHHHHHhC--cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--Ccc
Confidence 8999997 88999999999987 5567777776655210 001 1123467999998766432 223
Q ss_pred cCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccC--------------------------------
Q 006272 257 IDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL-------------------------------- 304 (652)
Q Consensus 257 ~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~-------------------------------- 304 (652)
+.-....++|+||.|++-+.. ..+...+..++ ..+.|++|.|.
T Consensus 333 l~~~~W~y~ILDEGH~IrNpn--s~islackki~---T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~ 407 (923)
T KOG0387|consen 333 LLGILWDYVILDEGHRIRNPN--SKISLACKKIR---TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEH 407 (923)
T ss_pred cccccccEEEecCcccccCCc--cHHHHHHHhcc---ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhh
Confidence 334457899999999986543 22233333333 45677777771
Q ss_pred ----------------------------------------------------------ChHHHHHHHHhccc--------
Q 006272 305 ----------------------------------------------------------PSWVKHISTKFLKS-------- 318 (652)
Q Consensus 305 ----------------------------------------------------------~~~~~~~~~~~~~~-------- 318 (652)
++....+...|+..
T Consensus 408 pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~n 487 (923)
T KOG0387|consen 408 PINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILN 487 (923)
T ss_pred heeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHc
Confidence 11111111111100
Q ss_pred -CCeEEEEccCcccccCCCceEEE--------------ccCCchhhhhhHHHHHHhh-CCCCeEEEEecchhHHHHHHHh
Q 006272 319 -DKKTIDLVGNEKMKASTNVRHIV--------------LPCSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADL 382 (652)
Q Consensus 319 -~~~~i~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~ll~~~-~~~~~~iVF~~s~~~~~~l~~~ 382 (652)
....+ .+........+-..++ -......++.++..++..+ ..+.++|+|..++....-|...
T Consensus 488 g~~~~l--~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~f 565 (923)
T KOG0387|consen 488 GKRNCL--SGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESF 565 (923)
T ss_pred CCccce--echHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHH
Confidence 00000 0000000000000000 1112245677788887665 4567999999999999998888
Q ss_pred cC-----CCcccccccchHHHHHHHhhhcCCCc-e-EEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCC
Q 006272 383 LP-----GARALHGDIQQSQREVTLAGFRSGKF-M-TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455 (652)
Q Consensus 383 l~-----~~~~lh~~~~~~~R~~~~~~f~~g~~-~-vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~ 455 (652)
|. ....+.|..+...|..+++.|.++.. . .|++|.|.+-|+|+-..+-||.||+.|+|.+-.|..-||.|.|+
T Consensus 566 L~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQ 645 (923)
T KOG0387|consen 566 LRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQ 645 (923)
T ss_pred HHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcC
Confidence 87 34567899999999999999997653 3 57899999999999999999999999999999999999999997
Q ss_pred cccceee-ccCC---cchHHHHHHHHHHHhc
Q 006272 456 EAAETIT-QVSD---SVIPAFKSAAEELLNN 482 (652)
Q Consensus 456 ~~~~~i~-~~~~---~~~~~~~~~~~~~~~~ 482 (652)
.--+.|+ ++.. ++.-|.+.+.++.|.+
T Consensus 646 kkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn 676 (923)
T KOG0387|consen 646 KKDVVVYRLMTAGTIEEKIYHRQIFKQFLTN 676 (923)
T ss_pred ccceEEEEEecCCcHHHHHHHHHHHHHHHHH
Confidence 6544443 3333 3344556566666554
No 123
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.79 E-value=2.2e-17 Score=184.24 Aligned_cols=310 Identities=13% Similarity=0.091 Sum_probs=178.5
Q ss_pred ChHHHHHHHHHHh----c------CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHH
Q 006272 132 LFPIQAMTFDMVL----D------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (652)
Q Consensus 132 ~~~~Q~~~i~~~l----~------~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~ 201 (652)
++++|..|+..+. . .+..++..+||||||++.+..+...+ .. ...+++|||+|+++|..
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~----------~~~~~vl~lvdR~~L~~ 307 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL----------LKNPKVFFVVDRRELDY 307 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh----------cCCCeEEEEECcHHHHH
Confidence 6788999997764 2 25699999999999998665544333 21 22457999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhc-CCCcEEEeCcHHHHHHHHhC--CcCCCCc-eEEecCcchhhhhcC
Q 006272 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERG--NIDLSSL-KFRVLDEADEMLRMG 277 (652)
Q Consensus 202 q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~--~~~l~~~-~~lViDEah~~l~~g 277 (652)
|+.+.|..++... .....+.......+. ....|+|+|...|...+... .+....- -+||+||||+...
T Consensus 308 Q~~~~f~~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~-- 379 (667)
T TIGR00348 308 QLMKEFQSLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY-- 379 (667)
T ss_pred HHHHHHHhhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--
Confidence 9999999876321 111112222223332 24689999999997644321 1111111 2899999998642
Q ss_pred cHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhccc-CCeEEEEccCcc---cccCCCceEEEcc----C-----
Q 006272 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKS-DKKTIDLVGNEK---MKASTNVRHIVLP----C----- 344 (652)
Q Consensus 278 f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~-~~~~i~~~~~~~---~~~~~~~~~~~~~----~----- 344 (652)
......+...++ +...+.||||+-..........+.. ....+....-.. ......+...... .
T Consensus 380 -~~~~~~l~~~~p---~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l 455 (667)
T TIGR00348 380 -GELAKNLKKALK---NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKL 455 (667)
T ss_pred -hHHHHHHHhhCC---CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHH
Confidence 222222334555 4679999999743111000011100 001111100000 0000000000000 0
Q ss_pred ---------------Cc-------------------hhh-hhhHHHHHHhh-----CCCCeEEEEecchhHHHHHHHhcC
Q 006272 345 ---------------SS-------------------SAR-SQVIPDIIRCY-----SSGGRTIIFTETKESASQLADLLP 384 (652)
Q Consensus 345 ---------------~~-------------------~~~-~~~l~~ll~~~-----~~~~~~iVF~~s~~~~~~l~~~l~ 384 (652)
.. ..+ .....+++..+ ...++++|||.++..|..++..|.
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~ 535 (667)
T TIGR00348 456 DAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALD 535 (667)
T ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHH
Confidence 00 000 01112222222 124899999999999998887763
Q ss_pred ---------CCcccccccchH---------------------HHHHHHhhhcC-CCceEEEEccccccCCCCCCccEEEE
Q 006272 385 ---------GARALHGDIQQS---------------------QREVTLAGFRS-GKFMTLVATNVAARGLDINDVQLIIQ 433 (652)
Q Consensus 385 ---------~~~~lh~~~~~~---------------------~R~~~~~~f~~-g~~~vLvaT~~~~~Gldi~~v~~VI~ 433 (652)
.+.++++..... ....++++|++ +.++|||++|++..|+|.|.+++++.
T Consensus 536 ~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyl 615 (667)
T TIGR00348 536 EELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYL 615 (667)
T ss_pred hhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEE
Confidence 122344332221 23478889976 68899999999999999999999887
Q ss_pred cCCCCCHHHHHHHhhhcccC---CCcccceeeccC
Q 006272 434 CEPPRDVEAYIHRSGRTGRA---GVEAAETITQVS 465 (652)
Q Consensus 434 ~~~p~s~~~y~qr~GR~gR~---g~~~~~~i~~~~ 465 (652)
.-+-.+ -.++|.+||+-|. ++....+|.++.
T Consensus 616 dKplk~-h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 616 DKPLKY-HGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred eccccc-cHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 665555 4689999999993 344444444443
No 124
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.78 E-value=4.1e-18 Score=181.89 Aligned_cols=295 Identities=18% Similarity=0.195 Sum_probs=189.3
Q ss_pred CCChHHHHHHHHHHh----cC-CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVL----DG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l----~~-~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~ 204 (652)
..++.+|..||..+. +| +.+|+++.||+|||.++. .++.+|.+..+. -++|+|+-++.|+.|.+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~~~~----------KRVLFLaDR~~Lv~QA~ 232 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKSGWV----------KRVLFLADRNALVDQAY 232 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhcchh----------heeeEEechHHHHHHHH
Confidence 357899999997654 44 349999999999998754 455666654332 26999999999999999
Q ss_pred HHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhC-----CcCCCCceEEecCcchhhhhcCcH
Q 006272 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-----NIDLSSLKFRVLDEADEMLRMGFV 279 (652)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-----~~~l~~~~~lViDEah~~l~~gf~ 279 (652)
..+..+..... ......+... ...+.|.|+|...+...+... .+....+++|||||||+=. .
T Consensus 233 ~af~~~~P~~~--~~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~ 299 (875)
T COG4096 233 GAFEDFLPFGT--KMNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----Y 299 (875)
T ss_pred HHHHHhCCCcc--ceeeeecccC-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----H
Confidence 99988764322 1222211111 114799999999999888654 3445568999999999854 5
Q ss_pred HHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcc------------------cCCeEEEEccC--cccccCCC---
Q 006272 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLK------------------SDKKTIDLVGN--EKMKASTN--- 336 (652)
Q Consensus 280 ~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~------------------~~~~~i~~~~~--~~~~~~~~--- 336 (652)
..+..|+.++.. -+++++||+...+..-.-.|+. -++..+.+.-. ..-.....
T Consensus 300 ~~~~~I~dYFdA----~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~se 375 (875)
T COG4096 300 SEWSSILDYFDA----ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSE 375 (875)
T ss_pred hhhHHHHHHHHH----HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccch
Confidence 666788888854 3444599976544333333331 11222211100 00000000
Q ss_pred --------c--eEEEccCC-------chhhhhhHHHHHHhh-CC------CCeEEEEecchhHHHHHHHhcC--------
Q 006272 337 --------V--RHIVLPCS-------SSARSQVIPDIIRCY-SS------GGRTIIFTETKESASQLADLLP-------- 384 (652)
Q Consensus 337 --------~--~~~~~~~~-------~~~~~~~l~~ll~~~-~~------~~~~iVF~~s~~~~~~l~~~l~-------- 384 (652)
+ ....+... .......+...+..+ .. .+++||||.+..+|+.+...|.
T Consensus 376 rek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~ 455 (875)
T COG4096 376 REKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNG 455 (875)
T ss_pred hhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccC
Confidence 0 00000000 011112222222221 11 4699999999999999999886
Q ss_pred -CCcccccccchHHHHHHHhhhcC--CCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCC
Q 006272 385 -GARALHGDIQQSQREVTLAGFRS--GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (652)
Q Consensus 385 -~~~~lh~~~~~~~R~~~~~~f~~--g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g 454 (652)
-+..+.++-.+.+ ..++.|.. .-.+|.|+.+++..|||+|.|-++|.+-.-.|..-|.|++||.-|.-
T Consensus 456 ~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 456 RYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred ceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccC
Confidence 2555666665543 33445543 34578888899999999999999999999999999999999999965
No 125
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.78 E-value=2e-17 Score=173.67 Aligned_cols=312 Identities=20% Similarity=0.269 Sum_probs=206.7
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l----~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.++++|.+.+.++. .|-+.|+....|-|||+.- |.++..+..... ..+ .-||+||...|. .|.++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~--------~~G-PfLVi~P~StL~-NW~~E 235 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKG--------IPG-PFLVIAPKSTLD-NWMNE 235 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcC--------CCC-CeEEEeeHhhHH-HHHHH
Confidence 68999999998875 5678999999999999853 233333332111 112 259999987765 57888
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHh---cCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHH
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKL---KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~---~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~ 283 (652)
|++++ .++++++++|+...+.....- ....+|+|+|++..+.- +..+.--+.+||||||||++-+.. ..+.
T Consensus 236 f~rf~--P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~ 309 (971)
T KOG0385|consen 236 FKRFT--PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLS 309 (971)
T ss_pred HHHhC--CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHH
Confidence 99988 678899999987554433221 24689999999988654 223334567899999999986553 3444
Q ss_pred HHHHhccCCCCceEEEEcccC----------------Ch-----------------------------------------
Q 006272 284 LILGKVEDANKVQTLLFSATL----------------PS----------------------------------------- 306 (652)
Q Consensus 284 ~i~~~~~~~~~~q~l~~SAT~----------------~~----------------------------------------- 306 (652)
.++..+.. ...+++|.|. |+
T Consensus 310 ~~lr~f~~---~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~ 386 (971)
T KOG0385|consen 310 KILREFKT---DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKS 386 (971)
T ss_pred HHHHHhcc---cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHH
Confidence 55555543 4567788881 10
Q ss_pred --------------------HHHHHHHHhcccCCeEEEEccC-cc-------cccCCCceEEEc---------------c
Q 006272 307 --------------------WVKHISTKFLKSDKKTIDLVGN-EK-------MKASTNVRHIVL---------------P 343 (652)
Q Consensus 307 --------------------~~~~~~~~~~~~~~~~i~~~~~-~~-------~~~~~~~~~~~~---------------~ 343 (652)
-.....+..+..+...+.-... .+ ........|-|+ .
T Consensus 387 dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehL 466 (971)
T KOG0385|consen 387 DVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHL 466 (971)
T ss_pred hHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHH
Confidence 0000000000000000000000 00 000000000000 0
Q ss_pred CCchhhhhhHHHHHHhh-CCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCC---ceEEEE
Q 006272 344 CSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK---FMTLVA 415 (652)
Q Consensus 344 ~~~~~~~~~l~~ll~~~-~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~---~~vLva 415 (652)
+....|+.+|..+|..+ ..+.++|||.+-....+-|.+++. ..+.+.|.++..+|...++.|.... +-.|++
T Consensus 467 v~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLS 546 (971)
T KOG0385|consen 467 VTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLS 546 (971)
T ss_pred HhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEe
Confidence 12345667777777554 467899999988888777777664 5678999999999999999997643 456899
Q ss_pred ccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceee
Q 006272 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETIT 462 (652)
Q Consensus 416 T~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~ 462 (652)
|.+.+-|||+-..+.||.||-.++|..-.|..-||.|.|+..-+.|+
T Consensus 547 TRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 547 TRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred ccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 99999999999999999999999999999999999999977655444
No 126
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.77 E-value=8.1e-17 Score=182.73 Aligned_cols=330 Identities=17% Similarity=0.213 Sum_probs=196.4
Q ss_pred CCCCCChHHHHHHHHH----HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHH
Q 006272 127 KGIESLFPIQAMTFDM----VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~----~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q 202 (652)
.|| ++++-|.+.... +..++.+++.|+||||||++|++|++.... +.++||++||++|+.|
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~--------------~~~vvI~t~T~~Lq~Q 306 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD--------------QRQIIVSVPTKILQDQ 306 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC--------------CCcEEEEeCcHHHHHH
Confidence 455 589999884433 346788999999999999999999887541 1259999999999999
Q ss_pred H-HHHHHHHhcCCCceEEEEeCCcchHHHH-----------------------------------------------HH-
Q 006272 203 V-HEDFDVYGGAVGLTSCCLYGGAPYHAQE-----------------------------------------------FK- 233 (652)
Q Consensus 203 ~-~~~~~~~~~~~~~~~~~~~gg~~~~~~~-----------------------------------------------~~- 233 (652)
+ .+.+..+....++++..+.|+..+--.. ..
T Consensus 307 l~~~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i 386 (820)
T PRK07246 307 IMAEEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQL 386 (820)
T ss_pred HHHHHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHh
Confidence 9 5778888777788777777665421100 00
Q ss_pred -----------------------hcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC-----c-------
Q 006272 234 -----------------------LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-----F------- 278 (652)
Q Consensus 234 -----------------------~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g-----f------- 278 (652)
-...++|||+...-|+.++..+.. +...++|||||||++.+.. .
T Consensus 387 ~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~-~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~ 465 (820)
T PRK07246 387 KHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD-FARNKVLVFDEAQKLMLQLEQLSRHQLNITSF 465 (820)
T ss_pred hccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC-CCCCCEEEEECcchhHHHHHHHhcceecHHHH
Confidence 011268999999888877755443 6778999999999875311 0
Q ss_pred HHHH-------------------------------------------HH-------H--------HHhc--cC-------
Q 006272 279 VEDV-------------------------------------------EL-------I--------LGKV--ED------- 291 (652)
Q Consensus 279 ~~~~-------------------------------------------~~-------i--------~~~~--~~------- 291 (652)
...+ .. + ...+ ..
T Consensus 466 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~ 545 (820)
T PRK07246 466 LQTIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLES 545 (820)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 0000 00 0 0000 00
Q ss_pred -------------------------CCCceEEEEcccCC--hHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEcc-
Q 006272 292 -------------------------ANKVQTLLFSATLP--SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP- 343 (652)
Q Consensus 292 -------------------------~~~~q~l~~SAT~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~- 343 (652)
.....+|++|||++ +.. .+ ...+........... .....-..+++.
T Consensus 546 ~~~~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~-~~~lGl~~~~~~~~~----~~~~~~~~~~i~~ 619 (820)
T PRK07246 546 EKQSEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SL-ADLLGFEEYLFHKIE----KDKKQDQLVVVDQ 619 (820)
T ss_pred cCCCCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cH-HHHcCCCccceecCC----CChHHccEEEeCC
Confidence 00136788999985 222 22 222221111110000 000011111211
Q ss_pred -CC------chhhhhhHHHHH-HhhCCCCeEEEEecchhHHHHHHHhcCCC---cccccccchHHHHHHHhhhcCCCceE
Q 006272 344 -CS------SSARSQVIPDII-RCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMT 412 (652)
Q Consensus 344 -~~------~~~~~~~l~~ll-~~~~~~~~~iVF~~s~~~~~~l~~~l~~~---~~lh~~~~~~~R~~~~~~f~~g~~~v 412 (652)
.+ .......+...+ .....+++++|+++|.+..+.++..|... ....|.- ..|..++++|+.+...|
T Consensus 620 ~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~l~Qg~~--~~~~~l~~~F~~~~~~v 697 (820)
T PRK07246 620 DMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSHLAQEKN--GTAYNIKKRFDRGEQQI 697 (820)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcEEEeCCC--ccHHHHHHHHHcCCCeE
Confidence 11 112222222222 22235689999999999999998887521 1222311 13567899999988899
Q ss_pred EEEccccccCCCCC--CccEEEEcCCC----CC--------------------------HHHHHHHhhhcccCCCcccce
Q 006272 413 LVATNVAARGLDIN--DVQLIIQCEPP----RD--------------------------VEAYIHRSGRTGRAGVEAAET 460 (652)
Q Consensus 413 LvaT~~~~~Gldi~--~v~~VI~~~~p----~s--------------------------~~~y~qr~GR~gR~g~~~~~~ 460 (652)
|++|..+..|||+| +...||...+| .+ ...+.|-+||.=|.-.+-+.+
T Consensus 698 LlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv 777 (820)
T PRK07246 698 LLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAV 777 (820)
T ss_pred EEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEE
Confidence 99999999999997 35556665554 22 234568899999987665544
Q ss_pred eeccCCcchHHHHHHHHHHH
Q 006272 461 ITQVSDSVIPAFKSAAEELL 480 (652)
Q Consensus 461 i~~~~~~~~~~~~~~~~~~~ 480 (652)
+++-..-....|.+.+-.-|
T Consensus 778 ~ilD~R~~~k~Yg~~~l~sL 797 (820)
T PRK07246 778 LILDRRILTKSYGKQILASL 797 (820)
T ss_pred EEECCcccccHHHHHHHHhC
Confidence 44333333344544443333
No 127
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=4.1e-17 Score=179.10 Aligned_cols=130 Identities=23% Similarity=0.258 Sum_probs=102.1
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
+|. .|+++|.-.--.+. +--|+...||+|||+++.+|++-....+. .+.|++||.-||.|-+++
T Consensus 79 lGm-~~ydVQliGg~~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al~G~-------------~VhvvT~ndyLA~RD~e~ 142 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLH--EGKIAEMRTGEGKTLVGTLAVYLNALSGK-------------GVHVVTVNDYLARRDANW 142 (913)
T ss_pred hCC-CcchhHHHhhhHhc--cCccccccCCCCChHHHHHHHHHHHHcCC-------------CEEEEeCCHHHHHHHHHH
Confidence 464 68888865544444 44588999999999999999987666554 389999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHH-HHHHHhC------CcCCCCceEEecCcchhhh
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEML 274 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~------~~~l~~~~~lViDEah~~l 274 (652)
+..+...+++++.++.+..+.......+. ++|+++|..-| .++|+.+ ......+.++||||+|.+|
T Consensus 143 m~~l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 143 MRPLYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred HHHHhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 99999999999999998877665544444 89999999886 3333322 1124789999999999976
No 128
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=1.4e-16 Score=173.03 Aligned_cols=327 Identities=20% Similarity=0.261 Sum_probs=203.0
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
+|. .|+++|.-.--.+..|+ |+...||-||||+..+|++-..+.+. .+-||+..--||..=+++
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~Gk-------------gVhVVTvNdYLA~RDae~ 138 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGK-------------GVIVSTVNEYLAERDAEE 138 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCC-------------ceEEEecchhhhhhhHHH
Confidence 465 68999987776666664 79999999999999999875544433 278889999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHH-HHHHHhC------CcCCCCceEEecCcchhhhh----
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLR---- 275 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~------~~~l~~~~~lViDEah~~l~---- 275 (652)
+..+...+|++|.++..+.......... .++|+++|..-| .++|+.+ ......+.+.||||+|.+|=
T Consensus 139 mg~vy~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEAr 216 (925)
T PRK12903 139 MGKVFNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAK 216 (925)
T ss_pred HHHHHHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccC
Confidence 9988888999999998876665444443 489999998876 3444332 12256788999999998761
Q ss_pred -----------c-CcHHHHHHHHHhccCC-----CCceEEEEccc-------------C-C-------hHHHHHH--HHh
Q 006272 276 -----------M-GFVEDVELILGKVEDA-----NKVQTLLFSAT-------------L-P-------SWVKHIS--TKF 315 (652)
Q Consensus 276 -----------~-gf~~~~~~i~~~~~~~-----~~~q~l~~SAT-------------~-~-------~~~~~~~--~~~ 315 (652)
. .++..+..+...+... .+.+.+.++.. + . .++.... ..+
T Consensus 217 TPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~l 296 (925)
T PRK12903 217 TPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKV 296 (925)
T ss_pred CcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHH
Confidence 0 1233333334333210 01122223221 0 0 0000000 001
Q ss_pred cccCCeEEE------Ec---------------------------------------------------------------
Q 006272 316 LKSDKKTID------LV--------------------------------------------------------------- 326 (652)
Q Consensus 316 ~~~~~~~i~------~~--------------------------------------------------------------- 326 (652)
+..+...+- ++
T Consensus 297 f~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~ 376 (925)
T PRK12903 297 MKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQ 376 (925)
T ss_pred HhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH
Confidence 111111110 00
Q ss_pred -------------cCcccccCCCceEEEccCCchhhhhh-HHHHHHhhCCCCeEEEEecchhHHHHHHHhcCCCcccccc
Q 006272 327 -------------GNEKMKASTNVRHIVLPCSSSARSQV-IPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGD 392 (652)
Q Consensus 327 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~~~~~lh~~ 392 (652)
+..++.........+ ......+... +..+...+..+.|+||.|.|++.++.|+..|.....-|.-
T Consensus 377 Ef~~iY~l~Vv~IPTnkP~~R~D~~d~i-y~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~v 455 (925)
T PRK12903 377 EFIDIYNMRVNVVPTNKPVIRKDEPDSI-FGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTV 455 (925)
T ss_pred HHHHHhCCCEEECCCCCCeeeeeCCCcE-EEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCcee
Confidence 000000000000011 1122344443 4445556668889999999999999999999855544544
Q ss_pred cch--HHHHHHHhhhcCC-CceEEEEccccccCCCCCCcc--------EEEEcCCCCCHHHHHHHhhhcccCCCccccee
Q 006272 393 IQQ--SQREVTLAGFRSG-KFMTLVATNVAARGLDINDVQ--------LIIQCEPPRDVEAYIHRSGRTGRAGVEAAETI 461 (652)
Q Consensus 393 ~~~--~~R~~~~~~f~~g-~~~vLvaT~~~~~Gldi~~v~--------~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i 461 (652)
|.. .+++..+-. ..| .-.|.|||++|+||-||.--. |||....|.|..---|-.||+||.|.+|...+
T Consensus 456 LNAk~~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 456 LNAKQNAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred ecccchhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 442 344433332 445 457999999999999996322 99999999999999999999999999986654
Q ss_pred e-ccCCcchHHHH
Q 006272 462 T-QVSDSVIPAFK 473 (652)
Q Consensus 462 ~-~~~~~~~~~~~ 473 (652)
+ ...++.+..|.
T Consensus 535 ~lSLeD~L~r~f~ 547 (925)
T PRK12903 535 FISLDDQLFRRFS 547 (925)
T ss_pred EEecchHHHHHhC
Confidence 4 34444444443
No 129
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=3.1e-17 Score=164.23 Aligned_cols=297 Identities=18% Similarity=0.191 Sum_probs=203.1
Q ss_pred CCChHHHHHHHHHHhcC---CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVLDG---SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~~---~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
+.++|+|+.++.....+ +.-|++.|.|+|||++-.-++. .+.+ ++||||.+--.+.||..+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-tikK---------------~clvLcts~VSVeQWkqQ 364 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TIKK---------------SCLVLCTSAVSVEQWKQQ 364 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-eecc---------------cEEEEecCccCHHHHHHH
Confidence 46899999999988733 6789999999999997544433 2221 499999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhC--------CcCCCCceEEecCcchhhhhcCc
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG--------NIDLSSLKFRVLDEADEMLRMGF 278 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~--------~~~l~~~~~lViDEah~~l~~gf 278 (652)
|..++...+-.++.++.+.. .....++.|+|+|+.++..--.+. .+.-..+.++|+||+|.+-..-|
T Consensus 365 fk~wsti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MF 439 (776)
T KOG1123|consen 365 FKQWSTIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMF 439 (776)
T ss_pred HHhhcccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHH
Confidence 99887655556666665432 234567899999987664322111 12234578999999998876667
Q ss_pred HHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCC----------------eEEEE---ccCc------cccc
Q 006272 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDK----------------KTIDL---VGNE------KMKA 333 (652)
Q Consensus 279 ~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~----------------~~i~~---~~~~------~~~~ 333 (652)
+..+..+-.++ .+.++||+-.+...+....+--.| ..+.+ .-.- ....
T Consensus 440 RRVlsiv~aHc-------KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~ 512 (776)
T KOG1123|consen 440 RRVLSIVQAHC-------KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLR 512 (776)
T ss_pred HHHHHHHHHHh-------hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHh
Confidence 77766666555 467899964322221111000000 11111 0000 0000
Q ss_pred CCCceEEEccCCchhhhhhHHHHHHhh-CCCCeEEEEecchhHHHHHHHhcCCCcccccccchHHHHHHHhhhcC-CCce
Q 006272 334 STNVRHIVLPCSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS-GKFM 411 (652)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~~iVF~~s~~~~~~l~~~l~~~~~lh~~~~~~~R~~~~~~f~~-g~~~ 411 (652)
...-+.+.+.+-+..|+.....||+.+ ..+.++|||..+.-.....+-.|. -..++|..+|.+|.++++.|+. ..+.
T Consensus 513 ~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~-KpfIYG~Tsq~ERm~ILqnFq~n~~vN 591 (776)
T KOG1123|consen 513 ENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG-KPFIYGPTSQNERMKILQNFQTNPKVN 591 (776)
T ss_pred hhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC-CceEECCCchhHHHHHHHhcccCCccc
Confidence 111122223334455666666666654 367899999999888888887774 4578899999999999999985 5788
Q ss_pred EEEEccccccCCCCCCccEEEEcCCC-CCHHHHHHHhhhcccCCC
Q 006272 412 TLVATNVAARGLDINDVQLIIQCEPP-RDVEAYIHRSGRTGRAGV 455 (652)
Q Consensus 412 vLvaT~~~~~Gldi~~v~~VI~~~~p-~s~~~y~qr~GR~gR~g~ 455 (652)
.++-+.|....||+|..+++|+...- .|-.+=.||.||.-|+-+
T Consensus 592 TIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 592 TIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred eEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhh
Confidence 89999999999999999999987654 377888999999999864
No 130
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.71 E-value=9.5e-16 Score=167.75 Aligned_cols=130 Identities=22% Similarity=0.292 Sum_probs=99.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.|+ .|+++|.-..-.+ .+.-|+.+.||.|||+++.+|++-..+.+. .+.||+++..||.+-+++
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~-------------~VhVvT~NdyLA~RD~e~ 136 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALTGK-------------GVHIVTVNDYLAKRDQEW 136 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhcCC-------------ceEEEeCCHHHHHHHHHH
Confidence 466 4888886655444 456799999999999999999964443332 389999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHH-HHHHhC------CcCCCCceEEecCcchhhh
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK-DHIERG------NIDLSSLKFRVLDEADEML 274 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~-~~l~~~------~~~l~~~~~lViDEah~~l 274 (652)
+..+...+|+++.++.++.+......... ++|+++|..-|- ++|+.. ......+.+.||||+|.+|
T Consensus 137 m~pvy~~LGLsvg~i~~~~~~~err~aY~--~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 137 MGQIYRFLGLTVGLIQEGMSSEERKKNYL--KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHHHcCCceeeeCCCCChHHHHHhcC--CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 99999999999999988877765444443 799999987552 333221 2235668899999999876
No 131
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=4.7e-16 Score=158.08 Aligned_cols=278 Identities=18% Similarity=0.200 Sum_probs=187.6
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCc
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~ 225 (652)
.+-++-++||.||||.-+ |+++...+ ..++.-|.|-||..|++.++..+ +.|-.++|..
T Consensus 191 RkIi~H~GPTNSGKTy~A----Lqrl~~ak-------------sGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE 249 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRA----LQRLKSAK-------------SGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEE 249 (700)
T ss_pred heEEEEeCCCCCchhHHH----HHHHhhhc-------------cceecchHHHHHHHHHHHhhhcC----CCccccccce
Confidence 355788999999999753 45665433 27999999999999999998854 5566666654
Q ss_pred chHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCc-HHHHHHHHHhccCCCCceEEEEcccC
Q 006272 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF-VEDVELILGKVEDANKVQTLLFSATL 304 (652)
Q Consensus 226 ~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf-~~~~~~i~~~~~~~~~~q~l~~SAT~ 304 (652)
.....-. ...++.+-||-+++- + -..+++.||||++.|-|... +.+...++....+ .+++..
T Consensus 250 ~~~~~~~--~~~a~hvScTVEM~s-------v-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad--EiHLCG----- 312 (700)
T KOG0953|consen 250 RRFVLDN--GNPAQHVSCTVEMVS-------V-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD--EIHLCG----- 312 (700)
T ss_pred eeecCCC--CCcccceEEEEEEee-------c-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhh--hhhccC-----
Confidence 3332211 223667777765431 1 24578999999999987653 3444556655544 444443
Q ss_pred ChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC
Q 006272 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP 384 (652)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~ 384 (652)
.+.+..+.++++......+.+..-++. ..-.-.+.+..-+....++..++ |-|++....+...+.
T Consensus 313 epsvldlV~~i~k~TGd~vev~~YeRl-------------~pL~v~~~~~~sl~nlk~GDCvV--~FSkk~I~~~k~kIE 377 (700)
T KOG0953|consen 313 EPSVLDLVRKILKMTGDDVEVREYERL-------------SPLVVEETALGSLSNLKPGDCVV--AFSKKDIFTVKKKIE 377 (700)
T ss_pred CchHHHHHHHHHhhcCCeeEEEeeccc-------------CcceehhhhhhhhccCCCCCeEE--EeehhhHHHHHHHHH
Confidence 234556666666443333333211110 00000112222333343444433 446777777766664
Q ss_pred -----CCcccccccchHHHHHHHhhhcC--CCceEEEEccccccCCCCCCccEEEEcCCC---------CCHHHHHHHhh
Q 006272 385 -----GARALHGDIQQSQREVTLAGFRS--GKFMTLVATNVAARGLDINDVQLIIQCEPP---------RDVEAYIHRSG 448 (652)
Q Consensus 385 -----~~~~lh~~~~~~~R~~~~~~f~~--g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p---------~s~~~y~qr~G 448 (652)
.+++++|.+++..|..--..|.+ ++++||||||+.++|||+ +++.||.|++- .+..+..|-+|
T Consensus 378 ~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAG 456 (700)
T KOG0953|consen 378 KAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAG 456 (700)
T ss_pred HhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhh
Confidence 58999999999999999999987 899999999999999999 79999998864 47889999999
Q ss_pred hcccCCC-cccceeeccCCcchHHHHHHHH
Q 006272 449 RTGRAGV-EAAETITQVSDSVIPAFKSAAE 477 (652)
Q Consensus 449 R~gR~g~-~~~~~i~~~~~~~~~~~~~~~~ 477 (652)
||||.|. .....++....+++..+.++++
T Consensus 457 RAGRf~s~~~~G~vTtl~~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 457 RAGRFGSKYPQGEVTTLHSEDLKLLKRILK 486 (700)
T ss_pred cccccccCCcCceEEEeeHhhHHHHHHHHh
Confidence 9999984 3566778888888888887776
No 132
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.70 E-value=1.6e-15 Score=164.54 Aligned_cols=316 Identities=17% Similarity=0.178 Sum_probs=191.8
Q ss_pred CChHHHHHHHHHHhc---CC-------cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHH
Q 006272 131 SLFPIQAMTFDMVLD---GS-------DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~---~~-------dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 200 (652)
.++|+|.+.+..+.. |. -+|+.-..|+|||+.....+...|...+...+ .--++|||+|. .|+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~------~~~k~lVV~P~-sLv 310 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP------LINKPLVVAPS-SLV 310 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc------cccccEEEccH-HHH
Confidence 578999999987653 22 27888889999999754443333333222100 01248999996 899
Q ss_pred HHHHHHHHHHhcCCCceEEEEeCCcch--HHHHHHh-----cCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhh
Q 006272 201 KQVHEDFDVYGGAVGLTSCCLYGGAPY--HAQEFKL-----KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (652)
Q Consensus 201 ~q~~~~~~~~~~~~~~~~~~~~gg~~~--~~~~~~~-----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~ 273 (652)
..|+++|.++.....+....+++.... ..+...+ .....|++-+.+.+.++... +.+..+++||+||.|++
T Consensus 311 ~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 311 NNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCc
Confidence 999999999887667888888888774 1111111 12356888888888766553 34677899999999997
Q ss_pred hhcCcHHHHHHHHHhccCCCCceEEEEcccCC------------------------------------------------
Q 006272 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLP------------------------------------------------ 305 (652)
Q Consensus 274 l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~------------------------------------------------ 305 (652)
-+. -..++..+......+.|++|.|+=
T Consensus 389 kN~-----~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~ 463 (776)
T KOG0390|consen 389 KNS-----DSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER 463 (776)
T ss_pred cch-----hhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh
Confidence 432 233333333333567888888810
Q ss_pred ----hHHHHHHHHhcccC------------CeEEEEccCc-----------cc--------------------ccCC---
Q 006272 306 ----SWVKHISTKFLKSD------------KKTIDLVGNE-----------KM--------------------KAST--- 335 (652)
Q Consensus 306 ----~~~~~~~~~~~~~~------------~~~i~~~~~~-----------~~--------------------~~~~--- 335 (652)
..+..+...|+... ...+-+.... .. ..++
T Consensus 464 ~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~ 543 (776)
T KOG0390|consen 464 EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLL 543 (776)
T ss_pred HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhh
Confidence 00112222222100 0000000000 00 0000
Q ss_pred ----------------------CceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEec---chhHHH----HHHHhcC-C
Q 006272 336 ----------------------NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTE---TKESAS----QLADLLP-G 385 (652)
Q Consensus 336 ----------------------~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~---s~~~~~----~l~~~l~-~ 385 (652)
..++.........++..|..++... ..++++|+. ...+.. .++.+.. .
T Consensus 544 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~--~ek~~~~~v~Isny~~tldl~e~~~~~~g~~ 621 (776)
T KOG0390|consen 544 LLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI--REKLLVKSVLISNYTQTLDLFEQLCRWRGYE 621 (776)
T ss_pred cccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH--hhhcceEEEEeccHHHHHHHHHHHHhhcCce
Confidence 0000000111123444444444222 234444432 222332 2333222 6
Q ss_pred CcccccccchHHHHHHHhhhcCCCc--e-EEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceee
Q 006272 386 ARALHGDIQQSQREVTLAGFRSGKF--M-TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETIT 462 (652)
Q Consensus 386 ~~~lh~~~~~~~R~~~~~~f~~g~~--~-vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~ 462 (652)
+..|||.|+..+|+.+++.|.+... . .|.+|.+.+.||++-+.+.||.||++++|+.-.|.+.|+.|.|+.-.++|+
T Consensus 622 ~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 622 VLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 7889999999999999999976432 3 566789999999999999999999999999999999999999988766664
No 133
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.70 E-value=1.1e-16 Score=175.92 Aligned_cols=308 Identities=16% Similarity=0.266 Sum_probs=200.3
Q ss_pred CCChHHHHHHHHHHh----cCCcEEEEccCCCCchh---hhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHH
Q 006272 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTL---AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l----~~~dvl~~a~TGsGKTl---~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q 202 (652)
.+++.+|.+.+.+++ .+.++|+....|-|||+ +|+--+++.+.-. + -.|||+|.-.+ ..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~------------g-pflvvvplst~-~~ 434 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIH------------G-PFLVVVPLSTI-TA 434 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhcc------------C-CeEEEeehhhh-HH
Confidence 689999999998876 67899999999999996 4555555444211 1 16999998554 45
Q ss_pred HHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cC-----CCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhh
Q 006272 203 VHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KK-----GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (652)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~-----~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~ 273 (652)
|.++|..++ .+++++.+|....+..++.. .. ..+++++|.+.++.--. .+.--..+++++||||++
T Consensus 435 W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrL 509 (1373)
T KOG0384|consen 435 WEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRL 509 (1373)
T ss_pred HHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhc
Confidence 777787775 67788888877766555443 12 47899999998754221 122223578999999998
Q ss_pred hhcCcHHHHHHHHHhccCCCCceEEEEcccC-ChHHHHHHHHh--c----------------------------------
Q 006272 274 LRMGFVEDVELILGKVEDANKVQTLLFSATL-PSWVKHISTKF--L---------------------------------- 316 (652)
Q Consensus 274 l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~-~~~~~~~~~~~--~---------------------------------- 316 (652)
-+.. ..+...+..+. .-..+++|.|. -+.+..+.... +
T Consensus 510 kN~~--~~l~~~l~~f~---~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~ 584 (1373)
T KOG0384|consen 510 KNDE--SKLYESLNQFK---MNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFL 584 (1373)
T ss_pred CchH--HHHHHHHHHhc---ccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHH
Confidence 6432 22222233332 23466777772 11111111000 0
Q ss_pred ------------ccCCeE-EEEccC--cc------------------cccCCCc-----------eEEEccC--------
Q 006272 317 ------------KSDKKT-IDLVGN--EK------------------MKASTNV-----------RHIVLPC-------- 344 (652)
Q Consensus 317 ------------~~~~~~-i~~~~~--~~------------------~~~~~~~-----------~~~~~~~-------- 344 (652)
...... +.+.-. ++ .....++ .|-|+.-
T Consensus 585 lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~ 664 (1373)
T KOG0384|consen 585 LRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILG 664 (1373)
T ss_pred HHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHH
Confidence 000000 000000 00 0000000 0111100
Q ss_pred ---------------CchhhhhhHHHHHHhhC-CCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhh
Q 006272 345 ---------------SSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAG 404 (652)
Q Consensus 345 ---------------~~~~~~~~l~~ll~~~~-~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~ 404 (652)
.++.|+-+|..||..+. .+.+||||.+-....+-|+++|. ....|.|.+....|...++.
T Consensus 665 ~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDh 744 (1373)
T KOG0384|consen 665 DFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDH 744 (1373)
T ss_pred hhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHh
Confidence 01223333444444433 45799999999999999999997 56678999999999999999
Q ss_pred hcC---CCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCccccee
Q 006272 405 FRS---GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETI 461 (652)
Q Consensus 405 f~~---g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i 461 (652)
|.. ..+..|+||-+.+-|||+-..+.||.||--++|..=+|..-||.|.|+...+-|
T Consensus 745 Fnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnV 804 (1373)
T KOG0384|consen 745 FNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNV 804 (1373)
T ss_pred ccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEE
Confidence 975 467889999999999999999999999999999999999999999998765444
No 134
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.69 E-value=1.8e-14 Score=156.49 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=77.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC----CcccccccchHHHHHHHhhhcCC----CceEEEEccccccCCCC--------
Q 006272 362 SGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG----KFMTLVATNVAARGLDI-------- 425 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~~----~~~lh~~~~~~~R~~~~~~f~~g----~~~vLvaT~~~~~Gldi-------- 425 (652)
.+++++|.+.|....+.++..|.. ...+.|..+ .+...+++|+.. ...||++|+.+..|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 568999999999999999988852 233444332 456788888874 78999999999999999
Q ss_pred --CCccEEEEcCCCC----C---------------------HHHHHHHhhhcccCCCc--ccceeeccCCcchHHHHHHH
Q 006272 426 --NDVQLIIQCEPPR----D---------------------VEAYIHRSGRTGRAGVE--AAETITQVSDSVIPAFKSAA 476 (652)
Q Consensus 426 --~~v~~VI~~~~p~----s---------------------~~~y~qr~GR~gR~g~~--~~~~i~~~~~~~~~~~~~~~ 476 (652)
..+++||..-+|. + .-.+.|-+||.=|.-.+ .. .|...++.....|...+
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G-~i~ilD~R~~~~yg~~~ 625 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNR-RIHMLDGRIHWPYMESW 625 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCce-EEEEEeCCCCchhHHHH
Confidence 3488999877662 1 22456888888888766 33 34444444444444433
No 135
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.69 E-value=1e-15 Score=137.63 Aligned_cols=144 Identities=44% Similarity=0.555 Sum_probs=111.5
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcc
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~ 226 (652)
+++++.++||+|||++++.++.+...... ..+++|++|++.|+.|+.+.+...... .+.+..+.+...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~-----------~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 68 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK-----------GGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTS 68 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc-----------CCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcc
Confidence 46899999999999999888887766421 235999999999999999999887765 677777777777
Q ss_pred hHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccC
Q 006272 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (652)
Q Consensus 227 ~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~ 304 (652)
............+|+++|++.+...+.........+.+|||||+|.+....+............ ...+++++|||+
T Consensus 69 ~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~--~~~~~i~~saTp 144 (144)
T cd00046 69 IKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLP--KDRQVLLLSATP 144 (144)
T ss_pred hhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCC--ccceEEEEeccC
Confidence 6666656667899999999999988877655567789999999999976654443212222222 267899999995
No 136
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.67 E-value=2.4e-16 Score=139.97 Aligned_cols=122 Identities=36% Similarity=0.654 Sum_probs=105.0
Q ss_pred eEEEccCCchhhhhhHHHHHHhhC-CCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceE
Q 006272 338 RHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412 (652)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~v 412 (652)
.+.+...+ ..+...+..++.... .++++||||++...++.++..|. .+..+||.++..+|..+++.|.++...+
T Consensus 3 ~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 81 (131)
T cd00079 3 KQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVV 81 (131)
T ss_pred EEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcE
Confidence 33444333 256667777776553 57899999999999999999986 5778999999999999999999999999
Q ss_pred EEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccce
Q 006272 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAET 460 (652)
Q Consensus 413 LvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~ 460 (652)
||+|.++++|+|+|.+++||++++|++...|+|++||++|.|..+.+.
T Consensus 82 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~ 129 (131)
T cd00079 82 LVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAI 129 (131)
T ss_pred EEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEE
Confidence 999999999999999999999999999999999999999999765443
No 137
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.67 E-value=1e-16 Score=128.06 Aligned_cols=70 Identities=39% Similarity=0.722 Sum_probs=68.3
Q ss_pred CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCC
Q 006272 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (652)
Q Consensus 385 ~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g 454 (652)
.+..+||++++.+|..+++.|.++...|||||+++++|||+|++++||+|++|+|+..|+|++||++|.|
T Consensus 9 ~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 9 KVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred cEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 6778999999999999999999999999999999999999999999999999999999999999999987
No 138
>COG4889 Predicted helicase [General function prediction only]
Probab=99.66 E-value=3.7e-16 Score=165.60 Aligned_cols=318 Identities=18% Similarity=0.250 Sum_probs=191.4
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhcCC----cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEe
Q 006272 119 PLREKLKSKGIESLFPIQAMTFDMVLDGS----DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (652)
Q Consensus 119 ~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~----dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~ 194 (652)
++...|.-..-..|+|+|++||....++- .-=+.+.+|+|||++.+ -|.+.+... ++|+|+
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala~~--------------~iL~Lv 213 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALAAA--------------RILFLV 213 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHhhh--------------heEeec
Confidence 44444444556789999999999988652 23455678999999864 455666542 589999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHH-------------------------HHhcCCCcEEEeCcHHHH
Q 006272 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE-------------------------FKLKKGIDVVIGTPGRIK 249 (652)
Q Consensus 195 PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~-------------------------~~~~~~~~Ilv~Tp~rl~ 249 (652)
|+..|..|..+++..-. ...+....++.+....... +.-..+--|+++|+..+.
T Consensus 214 PSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~ 292 (1518)
T COG4889 214 PSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP 292 (1518)
T ss_pred chHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH
Confidence 99999999888776432 2445555555443322111 111124568999999887
Q ss_pred HHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCC---CCceEEEEcccCCh---HHHHH------------
Q 006272 250 DHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA---NKVQTLLFSATLPS---WVKHI------------ 311 (652)
Q Consensus 250 ~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~---~~~q~l~~SAT~~~---~~~~~------------ 311 (652)
..-.....-+..+++||+||||+-.......+=..-+..+... ...+.+.|+||..- ..+.-
T Consensus 293 ~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMD 372 (1518)
T COG4889 293 RIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMD 372 (1518)
T ss_pred HHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccc
Confidence 7665555567889999999999864222111111111122111 12356678888321 11110
Q ss_pred ------------------HHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhh-------------
Q 006272 312 ------------------STKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY------------- 360 (652)
Q Consensus 312 ------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~------------- 360 (652)
.+.++ .+...+.+.-.. ......+..........-..+-...++-++
T Consensus 373 De~~fGeef~rl~FgeAv~rdlL-TDYKVmvlaVd~-~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~ 450 (1518)
T COG4889 373 DELTFGEEFHRLGFGEAVERDLL-TDYKVMVLAVDK-EVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDL 450 (1518)
T ss_pred hhhhhchhhhcccHHHHHHhhhh-ccceEEEEEech-hhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccc
Confidence 11111 122222211111 011111111111111111111111222111
Q ss_pred -------CCCCeEEEEecchhHHHHHHHhcC-------------------CCcccccccchHHHHHHHh---hhcCCCce
Q 006272 361 -------SSGGRTIIFTETKESASQLADLLP-------------------GARALHGDIQQSQREVTLA---GFRSGKFM 411 (652)
Q Consensus 361 -------~~~~~~iVF~~s~~~~~~l~~~l~-------------------~~~~lh~~~~~~~R~~~~~---~f~~g~~~ 411 (652)
.+-.+.|-||.++++...+++.+. .+....|.|...+|...+. .|....++
T Consensus 451 ~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neck 530 (1518)
T COG4889 451 KNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECK 530 (1518)
T ss_pred cCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchhe
Confidence 011367899999999888887774 2445668899999965544 46778899
Q ss_pred EEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCC
Q 006272 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (652)
Q Consensus 412 vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g 454 (652)
||---..++.|+|+|.++.||.|++-.+.-+.+|.+||.-|..
T Consensus 531 IlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 531 ILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred eeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 9988899999999999999999999999999999999999964
No 139
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.65 E-value=6.5e-14 Score=162.20 Aligned_cols=120 Identities=16% Similarity=0.140 Sum_probs=86.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC------CcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCC--ccEEEE
Q 006272 362 SGGRTIIFTETKESASQLADLLPG------ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND--VQLIIQ 433 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~~------~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~--v~~VI~ 433 (652)
.++++|||++|....+.++..|.. ...+.-+++...|..+++.|+.+.-.||++|..+..|||+|+ +++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 567999999999999999988752 223333455567899999999988899999999999999996 478888
Q ss_pred cCCCC----C--------------------------HHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHh
Q 006272 434 CEPPR----D--------------------------VEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLN 481 (652)
Q Consensus 434 ~~~p~----s--------------------------~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~ 481 (652)
..+|. + ...+.|-+||.=|...+-+.++++-..-....|.+.+-..|.
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 66653 1 223468889999998775554444444344555554444443
No 140
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.64 E-value=6e-15 Score=161.91 Aligned_cols=317 Identities=16% Similarity=0.228 Sum_probs=204.8
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l----~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.++.+|++.+.++. -+-+-|+|...|-||||..+-.+....++.... ...-...-.|||||. .|+-.|..+
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~----~~e~~~~PSLIVCPs-TLtGHW~~E 1049 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSE----SSEFNRLPSLIVCPS-TLTGHWKSE 1049 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhccc----chhhccCCeEEECCc-hhhhHHHHH
Confidence 45678999998864 234789999999999996543333333333111 111122337999996 899999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHH
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~ 286 (652)
+.+|+.. +++....|....+...+.--++.+|+|++++.+.+-+.. +.-..+.|+|+||-|-|-+. ...+.+..
T Consensus 1050 ~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kav 1123 (1549)
T KOG0392|consen 1050 VKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAV 1123 (1549)
T ss_pred HHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHH
Confidence 9999876 677777777766666666666789999999988643321 11223568999999977432 23333333
Q ss_pred HhccCCCCceEEEEccc---------------------------------------------------------------
Q 006272 287 GKVEDANKVQTLLFSAT--------------------------------------------------------------- 303 (652)
Q Consensus 287 ~~~~~~~~~q~l~~SAT--------------------------------------------------------------- 303 (652)
..+.. -..+++|.|
T Consensus 1124 kqL~a---~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVL 1200 (1549)
T KOG0392|consen 1124 KQLRA---NHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVL 1200 (1549)
T ss_pred HHHhh---cceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHH
Confidence 34432 256778888
Q ss_pred --------------CCh------------HHHHHHHHhcccCCeEEEEc--cCcc-ccc-CCC----c-------eE--E
Q 006272 304 --------------LPS------------WVKHISTKFLKSDKKTIDLV--GNEK-MKA-STN----V-------RH--I 340 (652)
Q Consensus 304 --------------~~~------------~~~~~~~~~~~~~~~~i~~~--~~~~-~~~-~~~----~-------~~--~ 340 (652)
+|+ -..++.+.|.......+... +... ..+ ..+ + .| +
T Consensus 1201 PF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaL 1280 (1549)
T KOG0392|consen 1201 PFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPAL 1280 (1549)
T ss_pred HHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcce
Confidence 111 11111111111100000000 0000 000 000 0 00 0
Q ss_pred Ecc----------------------CCchhhhhhHHHHHHhhC---------------CCCeEEEEecchhHHHHHHHhc
Q 006272 341 VLP----------------------CSSSARSQVIPDIIRCYS---------------SGGRTIIFTETKESASQLADLL 383 (652)
Q Consensus 341 ~~~----------------------~~~~~~~~~l~~ll~~~~---------------~~~~~iVF~~s~~~~~~l~~~l 383 (652)
+.. .....|+.+|..++.... .+.++||||+-+...+-+.+.|
T Consensus 1281 vlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL 1360 (1549)
T KOG0392|consen 1281 VLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDL 1360 (1549)
T ss_pred eeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHH
Confidence 000 011335566666665442 2368999999999998887766
Q ss_pred C-----CCc--ccccccchHHHHHHHhhhcCC-CceEE-EEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCC
Q 006272 384 P-----GAR--ALHGDIQQSQREVTLAGFRSG-KFMTL-VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (652)
Q Consensus 384 ~-----~~~--~lh~~~~~~~R~~~~~~f~~g-~~~vL-vaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g 454 (652)
. .+. .+.|..++.+|.++.++|.++ .++|| ++|.|.+-|+|+-+.+.||.++=.|+|..-+|.+-||.|.|
T Consensus 1361 ~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIG 1440 (1549)
T KOG0392|consen 1361 FKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG 1440 (1549)
T ss_pred hhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhc
Confidence 4 444 688999999999999999998 77875 57799999999999999999999999999999999999999
Q ss_pred Cccccee
Q 006272 455 VEAAETI 461 (652)
Q Consensus 455 ~~~~~~i 461 (652)
+.-..-|
T Consensus 1441 QKrvVNV 1447 (1549)
T KOG0392|consen 1441 QKRVVNV 1447 (1549)
T ss_pred Cceeeee
Confidence 8765544
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=2.3e-14 Score=156.68 Aligned_cols=130 Identities=22% Similarity=0.299 Sum_probs=101.1
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.|. .|+++|...--.+. +--|+.+.||-||||++.+|++-..+.+. .+-||+++..||..=+++
T Consensus 82 lG~-r~ydVQliGgl~Lh--~G~IAEM~TGEGKTL~atlpaylnAL~Gk-------------gVhVVTvNdYLA~RDae~ 145 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLH--EGQIAEMKTGEGKTLVATLPSYLNALTGK-------------GVHVVTVNDYLARRDAEW 145 (939)
T ss_pred hCC-CcchhHHHhhhhhc--CCceeeecCCCChhHHHHHHHHHHhhcCC-------------CeEEEeCCHHHHHhHHHH
Confidence 355 68888866554554 44588999999999999999986665543 289999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHH-----HHHHHh--CCcCCCCceEEecCcchhhh
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-----KDHIER--GNIDLSSLKFRVLDEADEML 274 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-----~~~l~~--~~~~l~~~~~lViDEah~~l 274 (652)
+..+...+|++|.++.++.+.... ...-.+||+++|+..| .+.+.. .......+.+.||||+|.+|
T Consensus 146 m~~vy~~LGLtvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 146 MGQVHRFLGLSVGLIQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHHHHHhCCeEEEECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 999999999999999887665543 3344699999999988 444432 22345778999999999876
No 142
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.64 E-value=5e-15 Score=162.80 Aligned_cols=315 Identities=17% Similarity=0.241 Sum_probs=217.1
Q ss_pred CChHHHHHHHHHHh-cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH-
Q 006272 131 SLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD- 208 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l-~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~- 208 (652)
...|+|.++++.+. .+.+|++.+|+|||||.|+-+.++. . ....+++++.|.-+.+..++..+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~-----------~~~~~~vyi~p~~~i~~~~~~~w~~ 1208 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---P-----------DTIGRAVYIAPLEEIADEQYRDWEK 1208 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---C-----------ccceEEEEecchHHHHHHHHHHHHH
Confidence 34789999999887 4567999999999999999888774 1 123469999999999988877775
Q ss_pred HHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC-----cHHHHH
Q 006272 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-----FVEDVE 283 (652)
Q Consensus 209 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g-----f~~~~~ 283 (652)
++....|..++.+.|..+.+.. +....+|+|+||+++-.+ + ..+.+++.|.||+|.+.... -...+.
T Consensus 1209 ~f~~~~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r 1280 (1674)
T KOG0951|consen 1209 KFSKLLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMR 1280 (1674)
T ss_pred hhccccCceEEecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHH
Confidence 6666688999999988877633 344578999999998554 2 57789999999999876322 112256
Q ss_pred HHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCce-EEEccCCchhhh-----hhHHHHH
Q 006272 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR-HIVLPCSSSARS-----QVIPDII 357 (652)
Q Consensus 284 ~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~l~~ll 357 (652)
.|..++.+ +++++.+|..+.+.- .+ -.+ .....+++....++.+ ..++ |.+-........ .....+.
T Consensus 1281 ~ia~q~~k--~ir~v~ls~~lana~-d~--ig~-s~~~v~Nf~p~~R~~P-l~i~i~~~~~~~~~~~~~am~~~~~~ai~ 1353 (1674)
T KOG0951|consen 1281 YIASQLEK--KIRVVALSSSLANAR-DL--IGA-SSSGVFNFSPSVRPVP-LEIHIQSVDISHFESRMLAMTKPTYTAIV 1353 (1674)
T ss_pred HHHHHHHh--heeEEEeehhhccch-hh--ccc-cccceeecCcccCCCc-eeEEEEEeccchhHHHHHHhhhhHHHHHH
Confidence 66667666 789999998876532 22 111 2334444444333222 1222 111111111111 2233444
Q ss_pred HhhCCCCeEEEEecchhHHHHHHHhcC--------------------------CCcccccccchHHHHHHHhhhcCCCce
Q 006272 358 RCYSSGGRTIIFTETKESASQLADLLP--------------------------GARALHGDIQQSQREVTLAGFRSGKFM 411 (652)
Q Consensus 358 ~~~~~~~~~iVF~~s~~~~~~l~~~l~--------------------------~~~~lh~~~~~~~R~~~~~~f~~g~~~ 411 (652)
+......+.+||+++++.|..++..|- ...+-|-+|+..+...+...|..|.+.
T Consensus 1354 ~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~ 1433 (1674)
T KOG0951|consen 1354 RHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQ 1433 (1674)
T ss_pred HHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEE
Confidence 445577899999999999987776542 122338899999999999999999999
Q ss_pred EEEEccccccCCCCCCccEEEE-----cC------CCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHH
Q 006272 412 TLVATNVAARGLDINDVQLIIQ-----CE------PPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELL 480 (652)
Q Consensus 412 vLvaT~~~~~Gldi~~v~~VI~-----~~------~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~ 480 (652)
|+|...- ..|+-... +.||- || .+.+.....|+.|+|.|+| .+|++.+.....+|++.+.+.|
T Consensus 1434 v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~~----k~vi~~~~~~k~yykkfl~e~l 1507 (1674)
T KOG0951|consen 1434 VCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGAG----KCVIMCHTPKKEYYKKFLYEPL 1507 (1674)
T ss_pred EEEEEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcCCc----cEEEEecCchHHHHHHhccCcC
Confidence 9998866 78876643 44442 33 3557899999999999954 5567777777777777665543
No 143
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.61 E-value=7.2e-15 Score=138.80 Aligned_cols=152 Identities=20% Similarity=0.203 Sum_probs=103.4
Q ss_pred CChHHHHHHHHHHhc-------CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLD-------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~-------~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~ 203 (652)
+|+++|.+++..+.. .+.+++.+|||||||.+++..+.+... ++||++|+..|+.|+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----------------~~l~~~p~~~l~~Q~ 66 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----------------KVLIVAPNISLLEQW 66 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----------------EEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----------------ceeEecCHHHHHHHH
Confidence 589999999998873 689999999999999988865555443 389999999999999
Q ss_pred HHHHHHHhcCCCceEE-----------EEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCC-----------cCCCC
Q 006272 204 HEDFDVYGGAVGLTSC-----------CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-----------IDLSS 261 (652)
Q Consensus 204 ~~~~~~~~~~~~~~~~-----------~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-----------~~l~~ 261 (652)
.+.+..+......... ...................+|++.|...|........ .....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T PF04851_consen 67 YDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNK 146 (184)
T ss_dssp HHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGS
T ss_pred HHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcccc
Confidence 9999766543211110 1111112222233335568999999999988765421 22346
Q ss_pred ceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCC
Q 006272 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (652)
Q Consensus 262 ~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 305 (652)
..+||+||||++.... .+..++. .....+|.||||++
T Consensus 147 ~~~vI~DEaH~~~~~~---~~~~i~~----~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 147 FDLVIIDEAHHYPSDS---SYREIIE----FKAAFILGLTATPF 183 (184)
T ss_dssp ESEEEEETGGCTHHHH---HHHHHHH----SSCCEEEEEESS-S
T ss_pred CCEEEEehhhhcCCHH---HHHHHHc----CCCCeEEEEEeCcc
Confidence 7899999999886332 1555555 22568999999975
No 144
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.61 E-value=4.7e-14 Score=150.39 Aligned_cols=293 Identities=18% Similarity=0.226 Sum_probs=177.0
Q ss_pred HHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH-----HHh
Q 006272 137 AMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-----VYG 211 (652)
Q Consensus 137 ~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~-----~~~ 211 (652)
...+.++..+.-+++.+.||+|||..|.-.||+.+..+..- ...-+.+..|+|-.++-+++.+. ..+
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g--------~~~na~v~qprrisaisiaerva~er~e~~g 455 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG--------ASFNAVVSQPRRISAISLAERVANERGEEVG 455 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc--------ccccceeccccccchHHHHHHHHHhhHHhhc
Confidence 34445666777899999999999999999999988876432 22347888899988877776663 233
Q ss_pred cCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccC
Q 006272 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291 (652)
Q Consensus 212 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~ 291 (652)
..++..+.... ......-.|++||-|.++..+... +..+.++|+||.|...-.+ +-+..++..+..
T Consensus 456 ~tvgy~vRf~S---------a~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~--dfll~~lr~m~~ 521 (1282)
T KOG0921|consen 456 ETCGYNVRFDS---------ATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDT--DFVLIVLREMIS 521 (1282)
T ss_pred ccccccccccc---------cccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccch--HHHHHHHHhhhc
Confidence 33333322111 111122469999999999998875 4567889999999753222 112222222111
Q ss_pred -CCCceEEEEcccCChHH--------------------HHHHHHhcccCCeEEEEccCcc-------------cccCCCc
Q 006272 292 -ANKVQTLLFSATLPSWV--------------------KHISTKFLKSDKKTIDLVGNEK-------------MKASTNV 337 (652)
Q Consensus 292 -~~~~q~l~~SAT~~~~~--------------------~~~~~~~~~~~~~~i~~~~~~~-------------~~~~~~~ 337 (652)
.....+++||||+..+. ..+....+.. .+..+.... ......-
T Consensus 522 ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~---~~~~vp~~~~~~k~k~~~~~~~~~~ddK~ 598 (1282)
T KOG0921|consen 522 TYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQ---MTQFVPSEPSQKKRKKDDDEEDEEVDDKG 598 (1282)
T ss_pred cchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhh---hhhccCCCcCccchhhcccccCchhhhcc
Confidence 11345555555543211 1111111100 000000000 0000000
Q ss_pred eEEEccCCc-------------------hhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC-----------CCc
Q 006272 338 RHIVLPCSS-------------------SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----------GAR 387 (652)
Q Consensus 338 ~~~~~~~~~-------------------~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~-----------~~~ 387 (652)
+.+-..|.. ....+.+...+....-.+.++||.+-......|+..|. .+.
T Consensus 599 ~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~il 678 (1282)
T KOG0921|consen 599 RNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEIL 678 (1282)
T ss_pred cccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccc
Confidence 000000000 01111122222222345789999999999888888775 578
Q ss_pred ccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCC------------------CCHHHHHHHhhh
Q 006272 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP------------------RDVEAYIHRSGR 449 (652)
Q Consensus 388 ~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p------------------~s~~~y~qr~GR 449 (652)
.+|+.+...+..++++....|..++|+.|.++...|.+.++.+||..+.- .|.-..+||.||
T Consensus 679 p~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr 758 (1282)
T KOG0921|consen 679 PLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGR 758 (1282)
T ss_pred cchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhccc
Confidence 89999999999999999999999999999999999999998888864432 256678999999
Q ss_pred cccCC
Q 006272 450 TGRAG 454 (652)
Q Consensus 450 ~gR~g 454 (652)
+||.-
T Consensus 759 ~grvR 763 (1282)
T KOG0921|consen 759 AGRVR 763 (1282)
T ss_pred Cceec
Confidence 98854
No 145
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.57 E-value=9.3e-14 Score=154.19 Aligned_cols=310 Identities=20% Similarity=0.170 Sum_probs=180.2
Q ss_pred CChHHHHHHHHHHhc--------CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHH
Q 006272 131 SLFPIQAMTFDMVLD--------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~--------~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q 202 (652)
.-+.||-.|...+.. |-=+|-.|.||+|||++=.- |+..|... ..+.|..|..-.|.|-.|
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~----------~~g~RfsiALGLRTLTLQ 476 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDD----------KQGARFAIALGLRSLTLQ 476 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCC----------CCCceEEEEccccceecc
Confidence 457899999987763 22378899999999997443 33444432 345578888888888888
Q ss_pred HHHHHHHHhcCCCceEEEEeCCcchHHHH-------------------------------------------HHhcC---
Q 006272 203 VHEDFDVYGGAVGLTSCCLYGGAPYHAQE-------------------------------------------FKLKK--- 236 (652)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~-------------------------------------------~~~~~--- 236 (652)
.-+.++.-..-..-...+++|+.....-. ..+..
T Consensus 477 TGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k 556 (1110)
T TIGR02562 477 TGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDK 556 (1110)
T ss_pred chHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChh
Confidence 88887764433333444455544322111 01110
Q ss_pred -----CCcEEEeCcHHHHHHHH--hC-CcCCC----CceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccC
Q 006272 237 -----GIDVVIGTPGRIKDHIE--RG-NIDLS----SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (652)
Q Consensus 237 -----~~~Ilv~Tp~rl~~~l~--~~-~~~l~----~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~ 304 (652)
..+|+|||+..++.... ++ ...+. .-+.|||||+|.+- ......+..++..+... ...+++||||+
T Consensus 557 ~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD-~~~~~~L~rlL~w~~~l-G~~VlLmSATL 634 (1110)
T TIGR02562 557 EKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYE-PEDLPALLRLVQLAGLL-GSRVLLSSATL 634 (1110)
T ss_pred hhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCC-HHHHHHHHHHHHHHHHc-CCCEEEEeCCC
Confidence 15799999999987763 21 11111 12679999999763 32234444555433222 57899999999
Q ss_pred ChHHHHHH-HHhc----------cc--CCeEEEEccCcccc----------------------------cCCCce-EEEc
Q 006272 305 PSWVKHIS-TKFL----------KS--DKKTIDLVGNEKMK----------------------------ASTNVR-HIVL 342 (652)
Q Consensus 305 ~~~~~~~~-~~~~----------~~--~~~~i~~~~~~~~~----------------------------~~~~~~-~~~~ 342 (652)
|+.+...+ ..|. .. .+..|.+.-.++.. ..+..+ -..+
T Consensus 635 P~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~ 714 (1110)
T TIGR02562 635 PPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELL 714 (1110)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEe
Confidence 99875543 2221 11 11222221111100 000011 1112
Q ss_pred cCCchh-----hhhhH--------HHHHHhhC-----CCCe---EEEEecchhHHHHHHHhcC----------CCccccc
Q 006272 343 PCSSSA-----RSQVI--------PDIIRCYS-----SGGR---TIIFTETKESASQLADLLP----------GARALHG 391 (652)
Q Consensus 343 ~~~~~~-----~~~~l--------~~ll~~~~-----~~~~---~iVF~~s~~~~~~l~~~l~----------~~~~lh~ 391 (652)
+++... ....+ ..+...+. .+.+ .||-+++++.+-.++..|. .+.+||+
T Consensus 715 ~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHS 794 (1110)
T TIGR02562 715 SLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHA 794 (1110)
T ss_pred ecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecc
Confidence 222211 11111 11111111 1122 3666777777776666553 3678999
Q ss_pred ccchHHHHHHHhhh----------------------cC----CCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHH
Q 006272 392 DIQQSQREVTLAGF----------------------RS----GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445 (652)
Q Consensus 392 ~~~~~~R~~~~~~f----------------------~~----g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~q 445 (652)
......|..+.+.. .+ +...|+|+|.+.+.|+|+ +.+++|- -|.++.+.+|
T Consensus 795 r~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ 871 (1110)
T TIGR02562 795 QDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQ 871 (1110)
T ss_pred cChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHH
Confidence 99877776655432 11 466899999999999999 5676654 3667999999
Q ss_pred HhhhcccCCCc
Q 006272 446 RSGRTGRAGVE 456 (652)
Q Consensus 446 r~GR~gR~g~~ 456 (652)
|+||+-|.+..
T Consensus 872 ~aGR~~R~~~~ 882 (1110)
T TIGR02562 872 LAGRVNRHRLE 882 (1110)
T ss_pred HhhcccccccC
Confidence 99999999854
No 146
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.57 E-value=4.9e-13 Score=134.44 Aligned_cols=310 Identities=12% Similarity=0.174 Sum_probs=195.5
Q ss_pred CCCChHHHHHHHHHHh-cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHH
Q 006272 129 IESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (652)
Q Consensus 129 ~~~~~~~Q~~~i~~~l-~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 207 (652)
+..+.|+|.+.+...+ .|-.+++....|-|||+.++.-+ ..+...+ ..|||||. .|-.-|++.|
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA--~yyraEw------------plliVcPA-svrftWa~al 260 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIA--RYYRAEW------------PLLIVCPA-SVRFTWAKAL 260 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHH--HHHhhcC------------cEEEEecH-HHhHHHHHHH
Confidence 3457899999987766 67889999999999999755332 2333222 27999997 6677789999
Q ss_pred HHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHH
Q 006272 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287 (652)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~ 287 (652)
+++...... +.++.++...- ..+-....|.|.+++.|..+-. .+.-....+||+||.|.+-+ +-....+.++.
T Consensus 261 ~r~lps~~p-i~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~-sktkr~Ka~~d 333 (689)
T KOG1000|consen 261 NRFLPSIHP-IFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKD-SKTKRTKAATD 333 (689)
T ss_pred HHhcccccc-eEEEecccCCc---cccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhc-cchhhhhhhhh
Confidence 888754332 33444433221 1112235789999988755432 23344578999999997644 32334555555
Q ss_pred hccCCCCceEEEEcccCC----h---------------HHHHHHHHhcccCCeEEEEc--cCcc----------------
Q 006272 288 KVEDANKVQTLLFSATLP----S---------------WVKHISTKFLKSDKKTIDLV--GNEK---------------- 330 (652)
Q Consensus 288 ~~~~~~~~q~l~~SAT~~----~---------------~~~~~~~~~~~~~~~~i~~~--~~~~---------------- 330 (652)
.+.. -.++|++|.|.. . ....+..+|+......+... +-..
T Consensus 334 llk~--akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRR 411 (689)
T KOG1000|consen 334 LLKV--AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRR 411 (689)
T ss_pred HHHH--hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHH
Confidence 5444 347999999931 1 12223333332111111110 0000
Q ss_pred ------cccCCCceEEEccCCc-------------------------------------hhhhhhHHH-HHH----hhCC
Q 006272 331 ------MKASTNVRHIVLPCSS-------------------------------------SARSQVIPD-IIR----CYSS 362 (652)
Q Consensus 331 ------~~~~~~~~~~~~~~~~-------------------------------------~~~~~~l~~-ll~----~~~~ 362 (652)
...+..-++.++.+.. ..|...+.. |+. -..+
T Consensus 412 lK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~ 491 (689)
T KOG1000|consen 412 LKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAP 491 (689)
T ss_pred HHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCC
Confidence 0111112222222211 001111111 111 1124
Q ss_pred CCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCC-CceE-EEEccccccCCCCCCccEEEEcCC
Q 006272 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG-KFMT-LVATNVAARGLDINDVQLIIQCEP 436 (652)
Q Consensus 363 ~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g-~~~v-LvaT~~~~~Gldi~~v~~VI~~~~ 436 (652)
..+.+|||......+.+...+. ....+.|..++.+|....+.|..+ ++.| +++-.+++.||++...+.||+..+
T Consensus 492 ~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL 571 (689)
T KOG1000|consen 492 PRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAEL 571 (689)
T ss_pred CceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEe
Confidence 5789999999998888888776 445688999999999999999864 5555 556688899999999999999999
Q ss_pred CCCHHHHHHHhhhcccCCCcccceee
Q 006272 437 PRDVEAYIHRSGRTGRAGVEAAETIT 462 (652)
Q Consensus 437 p~s~~~y~qr~GR~gR~g~~~~~~i~ 462 (652)
++++.-.+|.--|+.|.|......|.
T Consensus 572 ~wnPgvLlQAEDRaHRiGQkssV~v~ 597 (689)
T KOG1000|consen 572 HWNPGVLLQAEDRAHRIGQKSSVFVQ 597 (689)
T ss_pred cCCCceEEechhhhhhccccceeeEE
Confidence 99999999999999999987655543
No 147
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.57 E-value=2.1e-13 Score=144.30 Aligned_cols=328 Identities=19% Similarity=0.231 Sum_probs=203.3
Q ss_pred ChHHHHHHHHHHh----cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHH
Q 006272 132 LFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (652)
Q Consensus 132 ~~~~Q~~~i~~~l----~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 207 (652)
+-++|.-.+.++. .+-+.|+....|-|||... +..+..|..... .+ .-|||||.-.| ..|.++|
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~---------~g-pHLVVvPsSTl-eNWlrEf 467 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGN---------PG-PHLVVVPSSTL-ENWLREF 467 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCC---------CC-CcEEEecchhH-HHHHHHH
Confidence 6789999988765 4456799999999999642 223333333221 11 25999999666 4577888
Q ss_pred HHHhcCCCceEEEEeCCcchHHHHHHhc----CCCcEEEeCcHHHHHHHH-hCCcCCCCceEEecCcchhhhhcCcHHHH
Q 006272 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLK----KGIDVVIGTPGRIKDHIE-RGNIDLSSLKFRVLDEADEMLRMGFVEDV 282 (652)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~----~~~~Ilv~Tp~rl~~~l~-~~~~~l~~~~~lViDEah~~l~~gf~~~~ 282 (652)
.++| ..+++...||....+.+.+... ..++|+++|+.....--. +..+.-.++.++|+||+|.+-++. ...+
T Consensus 468 ~kwC--Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy 544 (941)
T KOG0389|consen 468 AKWC--PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERY 544 (941)
T ss_pred HHhC--CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHH
Confidence 8888 5688999999887777665542 368999999876542211 122334567899999999876554 3444
Q ss_pred HHHHHhccCCCCceEEEEcccCC-hHHHH---------------------------------------------------
Q 006272 283 ELILGKVEDANKVQTLLFSATLP-SWVKH--------------------------------------------------- 310 (652)
Q Consensus 283 ~~i~~~~~~~~~~q~l~~SAT~~-~~~~~--------------------------------------------------- 310 (652)
..++..- .-+.|++|.|.- +.+..
T Consensus 545 ~~LM~I~----An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im 620 (941)
T KOG0389|consen 545 KHLMSIN----ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIM 620 (941)
T ss_pred HHhcccc----ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhh
Confidence 4444332 225677777710 00000
Q ss_pred -------HHHHhcccCCe---EEEEccCcc-----------------cccCCC---------------------ceEEE-
Q 006272 311 -------ISTKFLKSDKK---TIDLVGNEK-----------------MKASTN---------------------VRHIV- 341 (652)
Q Consensus 311 -------~~~~~~~~~~~---~i~~~~~~~-----------------~~~~~~---------------------~~~~~- 341 (652)
.-...+..-|. .|....-.. .....+ ++++|
T Consensus 621 ~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~ 700 (941)
T KOG0389|consen 621 KPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYT 700 (941)
T ss_pred hHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhcc
Confidence 00000100011 110000000 000000 00000
Q ss_pred ---------------------------------------------------c---cCCchhhhhhHHHHHHhhC-CCCeE
Q 006272 342 ---------------------------------------------------L---PCSSSARSQVIPDIIRCYS-SGGRT 366 (652)
Q Consensus 342 ---------------------------------------------------~---~~~~~~~~~~l~~ll~~~~-~~~~~ 366 (652)
+ ..-.+.|...|..+|.... .+.++
T Consensus 701 de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RV 780 (941)
T KOG0389|consen 701 DEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRV 780 (941)
T ss_pred HHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEE
Confidence 0 0001234444555554432 45799
Q ss_pred EEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCC--ceEEEEccccccCCCCCCccEEEEcCCCCCH
Q 006272 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK--FMTLVATNVAARGLDINDVQLIIQCEPPRDV 440 (652)
Q Consensus 367 iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~--~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~ 440 (652)
|||..-....+-|...|. ....|.|...-..|+.+++.|...+ .-+|++|.+.+-|||+-..++||.||+..+|
T Consensus 781 LiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP 860 (941)
T KOG0389|consen 781 LIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNP 860 (941)
T ss_pred EEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCC
Confidence 999988888777777765 4567889999999999999997653 3468999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCcccceee-ccCCcch-HHHHHHHHH
Q 006272 441 EAYIHRSGRTGRAGVEAAETIT-QVSDSVI-PAFKSAAEE 478 (652)
Q Consensus 441 ~~y~qr~GR~gR~g~~~~~~i~-~~~~~~~-~~~~~~~~~ 478 (652)
-.-.|.--|+.|.|..--+.|+ ++....+ +.+..+++.
T Consensus 861 ~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~ 900 (941)
T KOG0389|consen 861 YDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKT 900 (941)
T ss_pred cccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHH
Confidence 9999999999999976544443 4444433 333444333
No 148
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.51 E-value=4e-12 Score=131.42 Aligned_cols=267 Identities=20% Similarity=0.219 Sum_probs=188.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCC-Cce----EEEEeC---------------CcchHHHHHHhc----------
Q 006272 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLT----SCCLYG---------------GAPYHAQEFKLK---------- 235 (652)
Q Consensus 186 ~~~~~lil~PtreLa~q~~~~~~~~~~~~-~~~----~~~~~g---------------g~~~~~~~~~~~---------- 235 (652)
..|++|||+|+|..|.++.+.+-.+.... .+. ...-+| .....+......
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 56899999999999999998887765431 000 000011 000001111000
Q ss_pred --------------CCCcEEEeCcHHHHHHHHh------CCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCC--
Q 006272 236 --------------KGIDVVIGTPGRIKDHIER------GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN-- 293 (652)
Q Consensus 236 --------------~~~~Ilv~Tp~rl~~~l~~------~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~-- 293 (652)
...|||||+|=-|...+.. ..-.|+.|.++|+|.||.|+-. -++.+..++..+...+
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQ-NW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQ-NWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHh-hHHHHHHHHHHhccCCCC
Confidence 1379999999999888864 2334899999999999987643 4677777877775432
Q ss_pred --------------------CceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcc-----cccCCCceEEEcc--CCc
Q 006272 294 --------------------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK-----MKASTNVRHIVLP--CSS 346 (652)
Q Consensus 294 --------------------~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~--~~~ 346 (652)
-+|+|++|+...+.+..+....+.+....+.+..... ......+.|.+.. ++.
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 2699999999999999999987766666665544333 2445566776654 222
Q ss_pred -----hhhhh-----hHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceE
Q 006272 347 -----SARSQ-----VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412 (652)
Q Consensus 347 -----~~~~~-----~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~v 412 (652)
..++. ++..+.. ....+.+|||++|--+--+|...|+ ....+|-..++.+-.++-..|..|+.++
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~i 353 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPI 353 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceE
Confidence 22222 2333332 2356799999999999989999887 4567888889999999999999999999
Q ss_pred EEEcccc--ccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCC
Q 006272 413 LVATNVA--ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (652)
Q Consensus 413 LvaT~~~--~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g 454 (652)
|+.|.-+ -+=..|.+|++||.|++|..+.-|-..+.-.+...
T Consensus 354 LL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~ 397 (442)
T PF06862_consen 354 LLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESS 397 (442)
T ss_pred EEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccc
Confidence 9999754 46678899999999999999999988886555544
No 149
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.51 E-value=1.7e-12 Score=147.03 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=85.4
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCc--ccccccchHHHHHHHhhhcCCCc-eEEEEccccccCCCCCC--ccEEEEcCC
Q 006272 362 SGGRTIIFTETKESASQLADLLPGAR--ALHGDIQQSQREVTLAGFRSGKF-MTLVATNVAARGLDIND--VQLIIQCEP 436 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~~~~--~lh~~~~~~~R~~~~~~f~~g~~-~vLvaT~~~~~Gldi~~--v~~VI~~~~ 436 (652)
.++++|||++|....+.+++.+.... ..+-......+...++.|..+.- .++|+|..+..|||+|+ .+.||...+
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~l 557 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDEREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGL 557 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEec
Confidence 34699999999999999999987433 23444445556688888887655 89999999999999996 477888777
Q ss_pred CC------------------------------CHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHhc
Q 006272 437 PR------------------------------DVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNN 482 (652)
Q Consensus 437 p~------------------------------s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 482 (652)
|. -.....|-+||.=|.-.+-+.++++-..-....+...+-+.+..
T Consensus 558 Pfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~ 633 (654)
T COG1199 558 PFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPP 633 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCC
Confidence 63 23456799999999765544444443333334455555555443
No 150
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=4.2e-12 Score=128.89 Aligned_cols=324 Identities=19% Similarity=0.223 Sum_probs=206.4
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEccC-CCCc--hhhhHHHHHHHHhCCCCC--------Cccc----------CCCCCCC
Q 006272 130 ESLFPIQAMTFDMVLDGSDLVGRART-GQGK--TLAFVLPILESLTNGPTK--------ASKK----------TGYGRAP 188 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~~~dvl~~a~T-GsGK--Tl~~~lpil~~l~~~~~~--------~~~~----------~~~~~~~ 188 (652)
..+|+.|.+.+....+-+|++..-.| +.|+ +-.|++-+|+++++.... .+.+ ...-..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 46899999999999999998754333 3455 346888888887642211 1110 1113568
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCc-e--------EEEEeCCc----------------------c--------hHH
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGL-T--------SCCLYGGA----------------------P--------YHA 229 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~-~--------~~~~~gg~----------------------~--------~~~ 229 (652)
.+|||||+|+-|-.+.+.+..+..+..- + ..--|++. . +..
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999999999877433211 0 00111110 0 000
Q ss_pred HHHHh---cCCCcEEEeCcHHHHHHHHh------CCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCC-------
Q 006272 230 QEFKL---KKGIDVVIGTPGRIKDHIER------GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN------- 293 (652)
Q Consensus 230 ~~~~~---~~~~~Ilv~Tp~rl~~~l~~------~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~------- 293 (652)
....| -...||+||+|=-|.-.+.. ..-.|+.|.++|||-||-|+... ++.+..|+.++...+
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCCC
Confidence 00001 12479999999988887752 12237889999999999987555 677888888775422
Q ss_pred ---------------CceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcc----cccCCCceEEEcc--C-----Cch
Q 006272 294 ---------------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK----MKASTNVRHIVLP--C-----SSS 347 (652)
Q Consensus 294 ---------------~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~--~-----~~~ 347 (652)
-+|+++||+-..+....+...++.+....+....... ......+.|.+.. + ...
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 1589999998888787777777755444443321111 1111222222211 1 112
Q ss_pred hhhhh-HHHHHHhhC--CCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEcccc-
Q 006272 348 ARSQV-IPDIIRCYS--SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA- 419 (652)
Q Consensus 348 ~~~~~-l~~ll~~~~--~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~- 419 (652)
.++.. +..|+-.+. ....+|||.++--.--++..+|+ ....+|--.+...-.++-+.|-.|...||+-|.-+
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~h 613 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAH 613 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhh
Confidence 23322 222222221 13468999999999888888887 33345555555666677788999999999999765
Q ss_pred -ccCCCCCCccEEEEcCCCCCHHHH---HHHhhhcccCC
Q 006272 420 -ARGLDINDVQLIIQCEPPRDVEAY---IHRSGRTGRAG 454 (652)
Q Consensus 420 -~~Gldi~~v~~VI~~~~p~s~~~y---~qr~GR~gR~g 454 (652)
-|-.+|.+|..||.|.+|..|.-| +.+++|+.-.|
T Consensus 614 ffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~g 652 (698)
T KOG2340|consen 614 FFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQG 652 (698)
T ss_pred hhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccC
Confidence 477899999999999999998776 55666765555
No 151
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.46 E-value=7.5e-14 Score=112.61 Aligned_cols=70 Identities=47% Similarity=0.752 Sum_probs=67.7
Q ss_pred CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCC
Q 006272 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (652)
Q Consensus 385 ~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g 454 (652)
.+..+||.+++.+|..+++.|.++...|||+|+++++|+|+|.+++||.+++|.+...|.|++||++|.|
T Consensus 13 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 13 KVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 5678999999999999999999999999999999999999999999999999999999999999999986
No 152
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.45 E-value=4.8e-11 Score=134.23 Aligned_cols=102 Identities=22% Similarity=0.320 Sum_probs=72.4
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC----CcccccccchHHHHHHHhhhc----CCCceEEEEccccccCCCCCC--ccEE
Q 006272 362 SGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFR----SGKFMTLVATNVAARGLDIND--VQLI 431 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~~----~~~lh~~~~~~~R~~~~~~f~----~g~~~vLvaT~~~~~Gldi~~--v~~V 431 (652)
..+.+|||++|....+.++..|.. -...++. ..|..+++.|+ .+...||++|..+..|||+|+ +++|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 455689999999999999888751 2233443 35677887776 467789999999999999986 7889
Q ss_pred EEcCCCC----CH--------------------------HHHHHHhhhcccCCCcccceeeccCCc
Q 006272 432 IQCEPPR----DV--------------------------EAYIHRSGRTGRAGVEAAETITQVSDS 467 (652)
Q Consensus 432 I~~~~p~----s~--------------------------~~y~qr~GR~gR~g~~~~~~i~~~~~~ 467 (652)
|...+|. ++ ..+.|-+||.=|...+-+. |++.+..
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~-i~ilD~R 674 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGR-VTILDRR 674 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEE-EEEEccc
Confidence 9877663 21 1235788898888766544 4444443
No 153
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.43 E-value=7.5e-12 Score=138.04 Aligned_cols=135 Identities=15% Similarity=0.172 Sum_probs=94.5
Q ss_pred EccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHH
Q 006272 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231 (652)
Q Consensus 152 ~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 231 (652)
.+-+|||||.+|+-.+-+.+..+. ++|||+|...|..|+.+.|+..+. +..+..++++.+.....
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~Gk-------------~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~ 230 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRAGR-------------GALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRY 230 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHcCC-------------eEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHH
Confidence 334699999999988877776643 499999999999999999987753 24577777776654333
Q ss_pred ----HHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhh--h-cC---cHHHHHHHHHhccCCCCceEEEEc
Q 006272 232 ----FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML--R-MG---FVEDVELILGKVEDANKVQTLLFS 301 (652)
Q Consensus 232 ----~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l--~-~g---f~~~~~~i~~~~~~~~~~q~l~~S 301 (652)
......+.|+|+|-..+. .-+.++.+|||||=|.-. + .+ ...++........ +..+|+.|
T Consensus 231 ~~w~~~~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~---~~~lvLgS 300 (665)
T PRK14873 231 RRWLAVLRGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQH---GCALLIGG 300 (665)
T ss_pred HHHHHHhCCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHc---CCcEEEEC
Confidence 333456899999954442 247899999999999532 1 11 2334444444433 67899999
Q ss_pred ccCChHHHHH
Q 006272 302 ATLPSWVKHI 311 (652)
Q Consensus 302 AT~~~~~~~~ 311 (652)
||.+-+....
T Consensus 301 aTPSles~~~ 310 (665)
T PRK14873 301 HARTAEAQAL 310 (665)
T ss_pred CCCCHHHHHH
Confidence 9987655433
No 154
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.42 E-value=1.5e-11 Score=123.75 Aligned_cols=103 Identities=15% Similarity=0.243 Sum_probs=79.2
Q ss_pred CeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCC-CceE-EEEccccccCCCCCCccEEEEcCCC
Q 006272 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG-KFMT-LVATNVAARGLDINDVQLIIQCEPP 437 (652)
Q Consensus 364 ~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g-~~~v-LvaT~~~~~Gldi~~v~~VI~~~~p 437 (652)
-+.|||.+-....+.+.-.|. .+..|-|+|++..|..+++.|.+. .+.| |++-.+.+.-||+-..++|+..|+.
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 356777666666665555555 566789999999999999999876 5666 4555777888999999999999999
Q ss_pred CCHHHHHHHhhhcccCCCcc-cceeeccCC
Q 006272 438 RDVEAYIHRSGRTGRAGVEA-AETITQVSD 466 (652)
Q Consensus 438 ~s~~~y~qr~GR~gR~g~~~-~~~i~~~~~ 466 (652)
+++.--.|.--|..|.|+.. +.++.+.-+
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 99999999888999988643 344444333
No 155
>PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [].; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A.
Probab=99.42 E-value=3.2e-13 Score=110.16 Aligned_cols=97 Identities=46% Similarity=0.658 Sum_probs=60.9
Q ss_pred CCcccccccccccCCCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecChhhHHHHHhhccC
Q 006272 500 GYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADN 579 (652)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~~~a~~~~~~~~~ 579 (652)
|+++++.||++++.++|+|+.+.....+..++++|+.|++++++...+.|++|.++.|.++++||+|.+.++.+...+.+
T Consensus 1 G~t~~~~RSLLt~~~g~vTl~l~~~~~i~~~~y~~~~L~~~L~e~~~~~v~~m~l~~d~~GavFDvP~~~~~~~~~~~~~ 80 (97)
T PF08152_consen 1 GYTEIKQRSLLTSEEGFVTLQLTCSREIRSPGYAWRILRRQLSEEIADKVKGMTLLKDKMGAVFDVPSEIAEEFLAKWED 80 (97)
T ss_dssp S-S-------------EEEEEEE-SS--SSTHHHHHHHHHHS-HHHHTT-EEEEE-TTSSEEEEEEEHHHHHHHHHH--S
T ss_pred CCCCCCccccccCCCCCEEEEEEcCCcCCCchhHHHHHHHhcCHHHHHhhCcEEEecCCCEEEEEChHHHHHHHHHhCcc
Confidence 56678899999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeccCCCcchh
Q 006272 580 AANVSLEVLKQLPPLQE 596 (652)
Q Consensus 580 ~~~i~l~~~~~lp~~~~ 596 (652)
.+++.+++++++|++++
T Consensus 81 ~~~~~l~v~~~LPeL~e 97 (97)
T PF08152_consen 81 SRGWQLSVATELPELQE 97 (97)
T ss_dssp S-S-EEE----------
T ss_pred cCCcEEEEcccCcCccC
Confidence 99999999999999864
No 156
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=7.4e-12 Score=138.64 Aligned_cols=127 Identities=22% Similarity=0.264 Sum_probs=91.8
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.|+++|. |-.+.-.+--|+-+.||-||||++.+|++-..+.+.. +-||+.+--||..=++++..+
T Consensus 169 ~~yDVQl--iGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~Gkg-------------VHvVTVNDYLA~RDaewmgpl 233 (1112)
T PRK12901 169 VHYDVQL--IGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNG-------------VHVVTVNDYLAKRDSEWMGPL 233 (1112)
T ss_pred cccchHH--hhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCC-------------cEEEEechhhhhccHHHHHHH
Confidence 4566664 4333334455889999999999999998866665442 778888899999888888888
Q ss_pred hcCCCceEEEEeC-CcchHHHHHHhcCCCcEEEeCcHHH-HHHHHhC------CcCCCCceEEecCcchhhh
Q 006272 211 GGAVGLTSCCLYG-GAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEML 274 (652)
Q Consensus 211 ~~~~~~~~~~~~g-g~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~------~~~l~~~~~lViDEah~~l 274 (652)
...+|+++.++.. ..+.. .+.-.-.+||.++|..-| .++|+.+ ......+.+.||||+|.+|
T Consensus 234 y~fLGLsvg~i~~~~~~~~--~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 234 YEFHGLSVDCIDKHQPNSE--ARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred HHHhCCceeecCCCCCCHH--HHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 8889999998865 32333 333444589999998766 3333322 2234668899999999876
No 157
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.40 E-value=3.6e-11 Score=131.58 Aligned_cols=108 Identities=19% Similarity=0.329 Sum_probs=84.2
Q ss_pred hhhhhHHHHHHhh-CCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCC--ceEEEEccccc
Q 006272 348 ARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK--FMTLVATNVAA 420 (652)
Q Consensus 348 ~~~~~l~~ll~~~-~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~--~~vLvaT~~~~ 420 (652)
.|+..|.-||+.+ ..+.++|||+.-....+-|...|. ....|.|...-++|+..+++|.... ++.|++|-..+
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 3455555555544 357899999999999999988886 2334567888999999999998753 46788999999
Q ss_pred cCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCC
Q 006272 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455 (652)
Q Consensus 421 ~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~ 455 (652)
.|||+-+.+.||+||-.+++.--.|.--|+.|.|.
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGq 1374 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQ 1374 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcC
Confidence 99999999999999999987766655555555553
No 158
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.29 E-value=9.9e-11 Score=125.93 Aligned_cols=114 Identities=17% Similarity=0.237 Sum_probs=93.6
Q ss_pred hhhhhHHHHHHhh-CCCCeEEEEecchhHHHHHHHhcC--------------------------CCcccccccchHHHHH
Q 006272 348 ARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP--------------------------GARALHGDIQQSQREV 400 (652)
Q Consensus 348 ~~~~~l~~ll~~~-~~~~~~iVF~~s~~~~~~l~~~l~--------------------------~~~~lh~~~~~~~R~~ 400 (652)
.++-+|..||... ..+.++|||..+......+..+|. ..+.|.|..+..+|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 3445566666543 457899999999999888888774 2345789999999999
Q ss_pred HHhhhcCC----CceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCccccee
Q 006272 401 TLAGFRSG----KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETI 461 (652)
Q Consensus 401 ~~~~f~~g----~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i 461 (652)
....|.+- ....||+|.+.+-|||+-..+.||.||..|+|.--+|-+=|+-|.|..--++|
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceee
Confidence 99999763 22469999999999999999999999999999999999999999997655544
No 159
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=1.1e-09 Score=124.34 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=59.4
Q ss_pred CCCCChHHHHHHHHHH----hcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHH
Q 006272 128 GIESLFPIQAMTFDMV----LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (652)
Q Consensus 128 g~~~~~~~Q~~~i~~~----l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~ 203 (652)
-|..++|.|.+.+..+ ..++++++.+|||+|||++.+.|++....... ..+++++++.|..-..|+
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~----------~~~kIiy~sRThsQl~q~ 76 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP----------EVRKIIYASRTHSQLEQA 76 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc----------ccccEEEEcccchHHHHH
Confidence 4666799998877554 47889999999999999999999998765432 124689999999989999
Q ss_pred HHHHHHHh
Q 006272 204 HEDFDVYG 211 (652)
Q Consensus 204 ~~~~~~~~ 211 (652)
.++++++.
T Consensus 77 i~Elk~~~ 84 (705)
T TIGR00604 77 TEELRKLM 84 (705)
T ss_pred HHHHHhhh
Confidence 99998753
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.26 E-value=3e-10 Score=123.58 Aligned_cols=278 Identities=18% Similarity=0.189 Sum_probs=171.0
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCc
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~ 225 (652)
..-.++.||.|||||.+..-++-+.+... ..++|+|+-.+.|+.+.+..|+...- .++....-..+.
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~~~------------~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~ 115 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALKNP------------DKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDY 115 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhccCC------------CCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeeccccc
Confidence 34578999999999998766555444321 22599999999999999999976432 122211111111
Q ss_pred chHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHH------H-HHHhccCCCCceEE
Q 006272 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE------L-ILGKVEDANKVQTL 298 (652)
Q Consensus 226 ~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~------~-i~~~~~~~~~~q~l 298 (652)
.+. ....+-++++.+.|..+. .-.+.++++|||||+-..+..-|.+.+. . +...+.. ...+|
T Consensus 116 ~i~------~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI 184 (824)
T PF02399_consen 116 IID------GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN--AKTVI 184 (824)
T ss_pred ccc------ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh--CCeEE
Confidence 010 113567777777776653 2236778999999999887654332222 2 2222333 45899
Q ss_pred EEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEc-----------------------------------c
Q 006272 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL-----------------------------------P 343 (652)
Q Consensus 299 ~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------------------------------~ 343 (652)
++-||+.....+++..+.. ...|.++.++-......-+.-++ .
T Consensus 185 ~~DA~ln~~tvdFl~~~Rp--~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (824)
T PF02399_consen 185 VMDADLNDQTVDFLASCRP--DENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATA 262 (824)
T ss_pred EecCCCCHHHHHHHHHhCC--CCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccccc
Confidence 9999999999998888652 22233322210000000000000 0
Q ss_pred CCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEcccc
Q 006272 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (652)
Q Consensus 344 ~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~ 419 (652)
....+.......++..+..+.++-||+.|...++.+++... .+..+++.-...+ + +. -++.+|+|-|.++
T Consensus 263 ~~~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~i 336 (824)
T PF02399_consen 263 AISNDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVI 336 (824)
T ss_pred ccccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--ccceeEEEEeceE
Confidence 00122334566666777778889999999998888877665 5666766555542 2 22 3678999999999
Q ss_pred ccCCCCCCcc--EEEEcCCC----CCHHHHHHHhhhcccCCC
Q 006272 420 ARGLDINDVQ--LIIQCEPP----RDVEAYIHRSGRTGRAGV 455 (652)
Q Consensus 420 ~~Gldi~~v~--~VI~~~~p----~s~~~y~qr~GR~gR~g~ 455 (652)
..|+++.... -|+-|=-| .+..+..|++||.-.-..
T Consensus 337 tvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~ 378 (824)
T PF02399_consen 337 TVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD 378 (824)
T ss_pred EEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc
Confidence 9999997553 24434222 245678999999876653
No 161
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.23 E-value=4.2e-11 Score=130.24 Aligned_cols=112 Identities=20% Similarity=0.339 Sum_probs=93.5
Q ss_pred hhhhhhHHHHHHhh-CCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCC---ceEEEEccc
Q 006272 347 SARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK---FMTLVATNV 418 (652)
Q Consensus 347 ~~~~~~l~~ll~~~-~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~---~~vLvaT~~ 418 (652)
..|+.+|..++..+ ..++++|.||.-..-...+..+|. ....+.|.....+|...+..|.... +..|.+|.+
T Consensus 709 sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstra 788 (1157)
T KOG0386|consen 709 SGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRA 788 (1157)
T ss_pred ccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecc
Confidence 34566666666544 367899999999888888888886 4556788999999999999997643 356889999
Q ss_pred cccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCccc
Q 006272 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAA 458 (652)
Q Consensus 419 ~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~ 458 (652)
.+.|+|+...+.||.||.-+++-...|+--|+.|.|...-
T Consensus 789 gglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~e 828 (1157)
T KOG0386|consen 789 GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKE 828 (1157)
T ss_pred cccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhh
Confidence 9999999999999999999999999999999999996543
No 162
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.22 E-value=8e-11 Score=101.60 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=81.5
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCC
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg 224 (652)
+|+-.++...+|+|||.-.+--++...... +.++|||.|||.++..+++.++. .++++....-.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~------------~~rvLvL~PTRvva~em~~aL~~----~~~~~~t~~~~ 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR------------RLRVLVLAPTRVVAEEMYEALKG----LPVRFHTNARM 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT------------T--EEEEESSHHHHHHHHHHTTT----SSEEEESTTSS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc------------cCeEEEecccHHHHHHHHHHHhc----CCcccCceeee
Confidence 345568899999999987655555433322 33699999999999999988754 23333211111
Q ss_pred cchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC---cHHHHHHHHHhccCCCCceEEEEc
Q 006272 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG---FVEDVELILGKVEDANKVQTLLFS 301 (652)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g---f~~~~~~i~~~~~~~~~~q~l~~S 301 (652)
.....+.-|-|+|.+.+.+.+.+ ...+.++++||+||||.. |.. +...+... .......+|++|
T Consensus 67 -------~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~----~~~g~~~~i~mT 133 (148)
T PF07652_consen 67 -------RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPTSIAARGYLREL----AESGEAKVIFMT 133 (148)
T ss_dssp -----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHHHHHHHHHHHHH----HHTTS-EEEEEE
T ss_pred -------ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHHHHhhheeHHHh----hhccCeeEEEEe
Confidence 11234467889999998887766 555789999999999975 332 22222222 222246899999
Q ss_pred ccCChHH
Q 006272 302 ATLPSWV 308 (652)
Q Consensus 302 AT~~~~~ 308 (652)
||.|-..
T Consensus 134 ATPPG~~ 140 (148)
T PF07652_consen 134 ATPPGSE 140 (148)
T ss_dssp SS-TT--
T ss_pred CCCCCCC
Confidence 9988654
No 163
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.15 E-value=2e-09 Score=113.21 Aligned_cols=101 Identities=13% Similarity=0.172 Sum_probs=79.3
Q ss_pred CCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcC--CCceEE-EEccccccCCCCCCccEEEEc
Q 006272 362 SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS--GKFMTL-VATNVAARGLDINDVQLIIQC 434 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~--g~~~vL-vaT~~~~~Gldi~~v~~VI~~ 434 (652)
...+++|...-.....-+...|. ....+||.....+|..+++.|.. |..+|+ ++-.+.+.|||+-+.+|+|..
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 45566666555555555555555 35578999999999999999953 445654 555777899999999999999
Q ss_pred CCCCCHHHHHHHhhhcccCCCcccceee
Q 006272 435 EPPRDVEAYIHRSGRTGRAGVEAAETIT 462 (652)
Q Consensus 435 ~~p~s~~~y~qr~GR~gR~g~~~~~~i~ 462 (652)
|+-|++.-=-|..-|.-|.|..-..+|.
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 9999999999999999999987766664
No 164
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.12 E-value=1.8e-09 Score=113.33 Aligned_cols=115 Identities=17% Similarity=0.289 Sum_probs=96.7
Q ss_pred hhhhhhHHHHHHhh-CCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCce-EEEEccccc
Q 006272 347 SARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM-TLVATNVAA 420 (652)
Q Consensus 347 ~~~~~~l~~ll~~~-~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~-vLvaT~~~~ 420 (652)
+.|+..|..++..+ ..+.++|+|..-.+..+.+.++|. .-..|.|.....+|..++..|....+- .|++|.+.+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 45666677776655 356799999999999998888886 455678999999999999999987654 588999999
Q ss_pred cCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCccccee
Q 006272 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETI 461 (652)
Q Consensus 421 ~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i 461 (652)
-||++-..+.||+||..+++..-.|..-||.|-|..--..|
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtv 1147 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTV 1147 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceee
Confidence 99999999999999999999999999999999997654333
No 165
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.10 E-value=7.9e-10 Score=113.10 Aligned_cols=154 Identities=19% Similarity=0.155 Sum_probs=92.4
Q ss_pred HHHHHHHHHh-------------cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHH
Q 006272 135 IQAMTFDMVL-------------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (652)
Q Consensus 135 ~Q~~~i~~~l-------------~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~ 201 (652)
+|.+++..++ ..+.+|++..+|+|||+..+..+.......... ..-.+|||||. .+..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~--------~~~~~LIv~P~-~l~~ 71 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQR--------GEKKTLIVVPS-SLLS 71 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTS--------S-S-EEEEE-T-TTHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccc--------cccceeEeecc-chhh
Confidence 4777776663 235699999999999987665544222221110 11138999999 8889
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHH-----HHHHhCCcCCCCceEEecCcchhhhhc
Q 006272 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK-----DHIERGNIDLSSLKFRVLDEADEMLRM 276 (652)
Q Consensus 202 q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~-----~~l~~~~~~l~~~~~lViDEah~~l~~ 276 (652)
||..++.+++....+++....+...............+|+|+|++.+. .... .+.--++++||+||+|.+-+.
T Consensus 72 ~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~--~l~~~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 72 QWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKE--DLKQIKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTH--HHHTSEEEEEEETTGGGGTTT
T ss_pred hhhhhhccccccccccccccccccccccccccccccceeeecccccccccccccccc--ccccccceeEEEecccccccc
Confidence 999999999865566777666665222222333456899999999998 1111 111234889999999998433
Q ss_pred CcHHHHHHHHHhccCCCCceEEEEcccC
Q 006272 277 GFVEDVELILGKVEDANKVQTLLFSATL 304 (652)
Q Consensus 277 gf~~~~~~i~~~~~~~~~~q~l~~SAT~ 304 (652)
. ......+..+. ....+++|||+
T Consensus 150 ~--s~~~~~l~~l~---~~~~~lLSgTP 172 (299)
T PF00176_consen 150 D--SKRYKALRKLR---ARYRWLLSGTP 172 (299)
T ss_dssp T--SHHHHHHHCCC---ECEEEEE-SS-
T ss_pred c--ccccccccccc---cceEEeecccc
Confidence 3 22223333344 45789999995
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.09 E-value=1.1e-09 Score=110.13 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=56.9
Q ss_pred CChHHHHHHH----HHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 131 SLFPIQAMTF----DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 131 ~~~~~Q~~~i----~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.|+|.|.+.+ ..+..+.++++.||||+|||++|++|++..+...... ....+++|+++|..+..|...+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-------~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-------IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-------ccccceeEEeccHHHHHHHHHH
Confidence 3699999944 4556789999999999999999999998776643221 0123589999999999988777
Q ss_pred HHHH
Q 006272 207 FDVY 210 (652)
Q Consensus 207 ~~~~ 210 (652)
++++
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7665
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.09 E-value=1.1e-09 Score=110.13 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=56.9
Q ss_pred CChHHHHHHH----HHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 131 SLFPIQAMTF----DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 131 ~~~~~Q~~~i----~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.|+|.|.+.+ ..+..+.++++.||||+|||++|++|++..+...... ....+++|+++|..+..|...+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-------~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-------IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-------ccccceeEEeccHHHHHHHHHH
Confidence 3699999944 4556789999999999999999999998776643221 0123589999999999988777
Q ss_pred HHHH
Q 006272 207 FDVY 210 (652)
Q Consensus 207 ~~~~ 210 (652)
++++
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7665
No 168
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.06 E-value=6e-09 Score=114.45 Aligned_cols=127 Identities=24% Similarity=0.293 Sum_probs=95.4
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.|+.+| .|-.+.-...-|+-..||-||||+..+|+.-..+.+.. +.+|+..--||..-++++..+
T Consensus 80 ~~~dVQ--liG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkg-------------VhvVTvNdYLA~RDae~m~~l 144 (822)
T COG0653 80 RHFDVQ--LLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKG-------------VHVVTVNDYLARRDAEWMGPL 144 (822)
T ss_pred ChhhHH--HhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCC-------------cEEeeehHHhhhhCHHHHHHH
Confidence 345555 45455555667889999999999999998755544432 788899999999999999999
Q ss_pred hcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHH-HHHHHhC------CcCCCCceEEecCcchhhh
Q 006272 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEML 274 (652)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~------~~~l~~~~~lViDEah~~l 274 (652)
....++++.+...+.+......... +||..+|-..| .+.+..+ ...+..+.+.|+||+|.++
T Consensus 145 ~~~LGlsvG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 145 YEFLGLSVGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HHHcCCceeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 9999999999998887766555554 89999998776 2333221 2234568899999999875
No 169
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.04 E-value=5.2e-09 Score=123.52 Aligned_cols=115 Identities=17% Similarity=0.300 Sum_probs=95.5
Q ss_pred hhhhhHHHHH-H-hhCCCC--eEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCC--CceEEEEcc
Q 006272 348 ARSQVIPDII-R-CYSSGG--RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG--KFMTLVATN 417 (652)
Q Consensus 348 ~~~~~l~~ll-~-~~~~~~--~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g--~~~vLvaT~ 417 (652)
.+...+..++ . ....+. ++|||++......-+...|. ....++|.++...|...++.|.++ ...+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4556666666 2 333445 89999999999888887776 466789999999999999999985 455677889
Q ss_pred ccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceee
Q 006272 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETIT 462 (652)
Q Consensus 418 ~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~ 462 (652)
+.+.|||+-..++||+||+.+++....|...|+.|.|......|+
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999999999999999999999999977655554
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.95 E-value=1.5e-08 Score=98.93 Aligned_cols=130 Identities=23% Similarity=0.335 Sum_probs=98.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.|+ .|+++|..++-.+..|+ |+...||=|||++..+|++-..+.+. .+-|++.+..||..=+++
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~-------------~V~vvT~NdyLA~RD~~~ 137 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGK-------------GVHVVTSNDYLAKRDAEE 137 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS--------------EEEEESSHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcC-------------CcEEEeccHHHhhccHHH
Confidence 455 69999999887777766 99999999999998888776665543 388999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHH-HHHHhC----C--cCCCCceEEecCcchhhh
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK-DHIERG----N--IDLSSLKFRVLDEADEML 274 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~-~~l~~~----~--~~l~~~~~lViDEah~~l 274 (652)
+..+...+++++..++.+.+......... ++|+++|...+. ++|... . .....+.++||||||.|+
T Consensus 138 ~~~~y~~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 138 MRPFYEFLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHHTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHHHhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999999999999888654444443 689999999885 344332 1 124678999999999886
No 171
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.74 E-value=3.1e-06 Score=98.34 Aligned_cols=311 Identities=15% Similarity=0.167 Sum_probs=166.8
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcc
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~ 226 (652)
+.-+|.--||||||++....+ ..+... ...|.+++|+-.++|-.|+.+.|..+........ ...+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~----------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s 338 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL----------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAES 338 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc----------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccC
Confidence 458999999999999754333 223322 2346799999999999999999999875433222 3344
Q ss_pred hHHHHHHhcCC-CcEEEeCcHHHHHHHHhC-CcCC-CCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 227 YHAQEFKLKKG-IDVVIGTPGRIKDHIERG-NIDL-SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 227 ~~~~~~~~~~~-~~Ilv~Tp~rl~~~l~~~-~~~l-~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
.......+... -.|+|+|-..|-..+... ...+ .+=-+||+||||+- ..|+ .-..+-..++ +...+.||.|
T Consensus 339 ~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS-Q~G~--~~~~~~~~~~---~a~~~gFTGT 412 (962)
T COG0610 339 TSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS-QYGE--LAKLLKKALK---KAIFIGFTGT 412 (962)
T ss_pred HHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc-cccH--HHHHHHHHhc---cceEEEeeCC
Confidence 44444455533 489999999988877554 1111 22236789999974 3332 2233334443 3679999999
Q ss_pred CChHH-----HHHHHHhcc--------cCCeEEEEccCcc---cccCCCceEEEc------cCC----------------
Q 006272 304 LPSWV-----KHISTKFLK--------SDKKTIDLVGNEK---MKASTNVRHIVL------PCS---------------- 345 (652)
Q Consensus 304 ~~~~~-----~~~~~~~~~--------~~~~~i~~~~~~~---~~~~~~~~~~~~------~~~---------------- 345 (652)
+-..- ......++. .+...+.+..... ........+... ...
T Consensus 413 Pi~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 492 (962)
T COG0610 413 PIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLE 492 (962)
T ss_pred ccccccccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhh
Confidence 53211 111122221 0000111100000 000000000000 000
Q ss_pred -----chhhhhhHHHHHHh----hCCCCeEEEEecchhHHHHHHHhcC-------------C--------------Cccc
Q 006272 346 -----SSARSQVIPDIIRC----YSSGGRTIIFTETKESASQLADLLP-------------G--------------ARAL 389 (652)
Q Consensus 346 -----~~~~~~~l~~ll~~----~~~~~~~iVF~~s~~~~~~l~~~l~-------------~--------------~~~l 389 (652)
.........++... .....++.+.|.++..|..++.... . ....
T Consensus 493 ~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 572 (962)
T COG0610 493 FLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQS 572 (962)
T ss_pred HHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhh
Confidence 00000111111111 1234577777777775544443322 0 0001
Q ss_pred ccccchHHHHHHHhh--hcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCC---cccceeecc
Q 006272 390 HGDIQQSQREVTLAG--FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV---EAAETITQV 464 (652)
Q Consensus 390 h~~~~~~~R~~~~~~--f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~---~~~~~i~~~ 464 (652)
|..... .+...... +.....++||.+|++-.|.|-|.++.. -.|-|----..+|-+-||-|.-. +.+.+|.+.
T Consensus 573 ~~~~~~-~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~ 650 (962)
T COG0610 573 HAKLKD-EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFR 650 (962)
T ss_pred hHHHHH-HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceE-EeccccccchHHHHHHHhccCCCCCCCCcEEEECc
Confidence 222222 22333344 356788999999999999999976654 46777777788999999999743 344444444
Q ss_pred CCcchHHHHHHHHHHHhc
Q 006272 465 SDSVIPAFKSAAEELLNN 482 (652)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~ 482 (652)
. ....+..++..+.+.
T Consensus 651 g--l~e~l~~Al~~Y~~~ 666 (962)
T COG0610 651 G--LKEALKKALKLYSNE 666 (962)
T ss_pred c--hHHHHHHHHHHhhcc
Confidence 4 445555555554444
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.49 E-value=1.5e-08 Score=111.41 Aligned_cols=257 Identities=21% Similarity=0.247 Sum_probs=150.6
Q ss_pred CChHHHHHHHHHHh-cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l-~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
...|+|.+.+..+. ...++++-+|||+|||++|.+.++..+...+. .++++++|-.+|+..-.+.+..
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-----------~kvvyIap~kalvker~~Dw~~ 995 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-----------SKVVYIAPDKALVKERSDDWSK 995 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-----------ccEEEEcCCchhhcccccchhh
Confidence 45566776665544 34678999999999999999999887766443 3599999999999888877776
Q ss_pred HhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHh--CCcCCCCceEEecCcchhhhhcCcHHHHHHHHH
Q 006272 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER--GNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287 (652)
Q Consensus 210 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~--~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~ 287 (652)
.....++++.-+.|+..... ..+ ..++|+|+||++.-.+... ..-.+++++.+|+||.|++.+ +..+.++.+..
T Consensus 996 r~~~~g~k~ie~tgd~~pd~--~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivs 1071 (1230)
T KOG0952|consen 996 RDELPGIKVIELTGDVTPDV--KAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVS 1071 (1230)
T ss_pred hcccCCceeEeccCccCCCh--hhe-ecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEee
Confidence 55555889999988876652 222 2489999999999887763 334578899999999997753 33344443333
Q ss_pred hccC-----CCCceEEEEcccCChHHHHHHHHhcccCCe-----EEEEccCcccccCCCceEEEccCCc-hhhhhhHHHH
Q 006272 288 KVED-----ANKVQTLLFSATLPSWVKHISTKFLKSDKK-----TIDLVGNEKMKASTNVRHIVLPCSS-SARSQVIPDI 356 (652)
Q Consensus 288 ~~~~-----~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l 356 (652)
.... ...++.+.+|--+ .....++ .++..... .+.-+..+.........+ .|+. .....-....
T Consensus 1072 r~n~~s~~t~~~vr~~glsta~-~na~dla-~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~---~cprm~smnkpa~qa 1146 (1230)
T KOG0952|consen 1072 RMNYISSQTEEPVRYLGLSTAL-ANANDLA-DWLNIKDMYNFRPSVRPVPLEVHIDGFPGQH---YCPRMMSMNKPAFQA 1146 (1230)
T ss_pred ccccCccccCcchhhhhHhhhh-hccHHHH-HHhCCCCcCCCCcccccCCceEeecCCCchh---cchhhhhcccHHHHH
Confidence 2221 1134555544322 2222332 23321111 011010000000011111 1111 1122334556
Q ss_pred HHhhCCCCeEEEEecchhHHHHHHHhc----C----CCcccccccchHHHHHHHhhhcCCC
Q 006272 357 IRCYSSGGRTIIFTETKESASQLADLL----P----GARALHGDIQQSQREVTLAGFRSGK 409 (652)
Q Consensus 357 l~~~~~~~~~iVF~~s~~~~~~l~~~l----~----~~~~lh~~~~~~~R~~~~~~f~~g~ 409 (652)
++.+++..++|||+.++.+...-+..| . ....++.+ ..+-+.++..-++..
T Consensus 1147 ik~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~ 1205 (1230)
T KOG0952|consen 1147 IKTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTN 1205 (1230)
T ss_pred HhcCCCCCceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccc
Confidence 677788899999999887654333222 1 33344444 444445555554443
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.47 E-value=1e-06 Score=99.35 Aligned_cols=73 Identities=18% Similarity=0.095 Sum_probs=55.3
Q ss_pred CceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCC---------CcccceeeccCCcchHHHHHHHHHH
Q 006272 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG---------VEAAETITQVSDSVIPAFKSAAEEL 479 (652)
Q Consensus 409 ~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g---------~~~~~~i~~~~~~~~~~~~~~~~~~ 479 (652)
..+.|++-.++..|.|.|+|-.+.-+.-..|...-.|.+||.-|-- .... .+.++.+.....|...+..-
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~-~LTvianesy~dFa~~LQ~E 579 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEF-RLNYLIDYDEKDFASKLVGE 579 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccE-EEEEEeCccHHHHHHHHHHH
Confidence 6789999999999999999999998988889999999999999864 1122 45555555555565555554
Q ss_pred Hhc
Q 006272 480 LNN 482 (652)
Q Consensus 480 ~~~ 482 (652)
+++
T Consensus 580 I~~ 582 (986)
T PRK15483 580 INS 582 (986)
T ss_pred HHh
Confidence 444
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.31 E-value=3.8e-06 Score=94.84 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=36.2
Q ss_pred CCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC
Q 006272 237 GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277 (652)
Q Consensus 237 ~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g 277 (652)
...|+++||..|..-|..+.+++..+..|||||||++....
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~ 47 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESS 47 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccc
Confidence 36799999999998888899999999999999999986443
No 175
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.30 E-value=1.8e-06 Score=84.72 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=49.0
Q ss_pred CChHHHHHHHHHHhcCCc-EEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~d-vl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
++.+-|.+||..++.... .++.||+|||||.+..- ++..+..... ........++||++||..-+.++.+.+..
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~----~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFK----SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchh----hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367889999999999998 99999999999965433 3333311000 00012234699999999999999988876
No 176
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.29 E-value=4.2e-06 Score=79.33 Aligned_cols=122 Identities=22% Similarity=0.274 Sum_probs=72.3
Q ss_pred CChHHHHHHHHHHhcCC--cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGS--DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~--dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 208 (652)
++++-|.+++..++.+. -++++++.|||||.+. ..+...+... +.++++++||...+..+.+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~------------g~~v~~~apT~~Aa~~L~~~~- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA------------GKRVIGLAPTNKAAKELREKT- 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT------------T--EEEEESSHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC------------CCeEEEECCcHHHHHHHHHhh-
Confidence 47889999999997554 4788899999999753 3344444432 235999999998887766542
Q ss_pred HHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCC----cCCCCceEEecCcchhhhhcCcHHHHHH
Q 006272 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN----IDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (652)
Q Consensus 209 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~----~~l~~~~~lViDEah~~l~~gf~~~~~~ 284 (652)
++.+ .|-.+++....... ..+...++||||||-.+. ...+..
T Consensus 67 ------~~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ 112 (196)
T PF13604_consen 67 ------GIEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLAR 112 (196)
T ss_dssp ------TS-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHH
T ss_pred ------Ccch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHH
Confidence 1222 22111111111110 115566899999999775 566777
Q ss_pred HHHhccCCCCceEEEEc
Q 006272 285 ILGKVEDANKVQTLLFS 301 (652)
Q Consensus 285 i~~~~~~~~~~q~l~~S 301 (652)
++..++.. ..+++++-
T Consensus 113 ll~~~~~~-~~klilvG 128 (196)
T PF13604_consen 113 LLRLAKKS-GAKLILVG 128 (196)
T ss_dssp HHHHS-T--T-EEEEEE
T ss_pred HHHHHHhc-CCEEEEEC
Confidence 88777652 45666553
No 177
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.27 E-value=3.6e-05 Score=83.98 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=42.8
Q ss_pred CCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCC
Q 006272 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (652)
Q Consensus 408 g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g 454 (652)
...+.|++--++-.|.|=|+|=.++-.....|..+=.|.+||.-|--
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 34789999999999999999999999999999999999999999954
No 178
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.25 E-value=1.3e-06 Score=81.99 Aligned_cols=144 Identities=19% Similarity=0.287 Sum_probs=73.6
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHH-----
Q 006272 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV----- 203 (652)
Q Consensus 129 ~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~----- 203 (652)
+...++-|..++.+++..+-+++.+|.|||||+.++..+++.+..+.. -+++|+-|+.+....+
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~-----------~kiii~Rp~v~~~~~lGflpG 70 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEY-----------DKIIITRPPVEAGEDLGFLPG 70 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS------------SEEEEEE-S--TT----SS--
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC-----------cEEEEEecCCCCccccccCCC
Confidence 345688999999999988889999999999999999888888877432 2478888887542111
Q ss_pred --HHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHH
Q 006272 204 --HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281 (652)
Q Consensus 204 --~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~ 281 (652)
.+.+.-+....--....+.+... ...+.....|-+.++.-+ +-. .+++ .+||+|||+.+. ..+
T Consensus 71 ~~~eK~~p~~~p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~i----RGr--t~~~-~~iIvDEaQN~t----~~~ 135 (205)
T PF02562_consen 71 DLEEKMEPYLRPIYDALEELFGKEK----LEELIQNGKIEIEPLAFI----RGR--TFDN-AFIIVDEAQNLT----PEE 135 (205)
T ss_dssp -------TTTHHHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGG----TT----B-S-EEEEE-SGGG------HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhChHh----HHHHhhcCeEEEEehhhh----cCc--cccc-eEEEEecccCCC----HHH
Confidence 00000000000000000001111 122222344555554322 111 2333 799999999886 778
Q ss_pred HHHHHHhccCCCCceEEEE
Q 006272 282 VELILGKVEDANKVQTLLF 300 (652)
Q Consensus 282 ~~~i~~~~~~~~~~q~l~~ 300 (652)
+..++.++.. +.+++++
T Consensus 136 ~k~ilTR~g~--~skii~~ 152 (205)
T PF02562_consen 136 LKMILTRIGE--GSKIIIT 152 (205)
T ss_dssp HHHHHTTB-T--T-EEEEE
T ss_pred HHHHHcccCC--CcEEEEe
Confidence 8999998876 5667665
No 179
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.22 E-value=1.3e-05 Score=84.64 Aligned_cols=83 Identities=22% Similarity=0.211 Sum_probs=65.5
Q ss_pred HHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHH
Q 006272 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (652)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~ 203 (652)
+...++.++..-|..|+.++|...-.|+++|+|+|||.+..--+++..... ...+||++|+.--+.|+
T Consensus 403 ~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~------------~~~VLvcApSNiAVDqL 470 (935)
T KOG1802|consen 403 FSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQH------------AGPVLVCAPSNIAVDQL 470 (935)
T ss_pred hcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhc------------CCceEEEcccchhHHHH
Confidence 344577788999999999999999999999999999998766555544432 22489999999989999
Q ss_pred HHHHHHHhcCCCceEEEEe
Q 006272 204 HEDFDVYGGAVGLTSCCLY 222 (652)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ 222 (652)
++.+.+ ++++++.++
T Consensus 471 aeKIh~----tgLKVvRl~ 485 (935)
T KOG1802|consen 471 AEKIHK----TGLKVVRLC 485 (935)
T ss_pred HHHHHh----cCceEeeee
Confidence 988876 446666554
No 180
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.19 E-value=6.7e-05 Score=80.49 Aligned_cols=101 Identities=17% Similarity=0.253 Sum_probs=83.6
Q ss_pred CCeEEEEecchhHHHHHHHhcC----------------------CCcccccccchHHHHHHHhhhcCC--C-ceEEEEcc
Q 006272 363 GGRTIIFTETKESASQLADLLP----------------------GARALHGDIQQSQREVTLAGFRSG--K-FMTLVATN 417 (652)
Q Consensus 363 ~~~~iVF~~s~~~~~~l~~~l~----------------------~~~~lh~~~~~~~R~~~~~~f~~g--~-~~vLvaT~ 417 (652)
+.++|||..+.....-|.+.|. .-..+.|..+..+|++.+++|.+- - .-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 3588999998888877777775 122467888899999999999753 2 35788999
Q ss_pred ccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeec
Q 006272 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQ 463 (652)
Q Consensus 418 ~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~ 463 (652)
...-||++-..+-+|.||..+++.--.|.+-|.-|.|...-|+|+.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 9999999988889999999999999999999999999887777754
No 181
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.07 E-value=5.1e-05 Score=74.59 Aligned_cols=176 Identities=16% Similarity=0.126 Sum_probs=112.6
Q ss_pred CcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhc----------CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCC
Q 006272 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD----------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178 (652)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~----------~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~ 178 (652)
...-.+.|++.++. .| .++..|.+++-.+.+ ..-.++-..||.||--...--|++....+..
T Consensus 21 ~~~y~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~-- 92 (303)
T PF13872_consen 21 DPTYRLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK-- 92 (303)
T ss_pred CCCcccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC--
Confidence 33344566665543 33 367788888865542 2458899999999998777777787776542
Q ss_pred cccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCC--
Q 006272 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-- 256 (652)
Q Consensus 179 ~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-- 256 (652)
++|.++.+-.|-....+.++.++.. .+.+..+..- ... ....-...|+++|+..|...-..+.
T Consensus 93 ----------r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~ 157 (303)
T PF13872_consen 93 ----------RAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KYG---DIIRLKEGVLFSTYSTLISESQSGGKY 157 (303)
T ss_pred ----------ceEEEECChhhhhHHHHHHHHhCCC-cccceechhh-ccC---cCCCCCCCccchhHHHHHhHHhccCCc
Confidence 4899999999999999999988754 3333333221 000 0112235699999998877643211
Q ss_pred -cCC---------CCceEEecCcchhhhhcCc--------HHHHHHHHHhccCCCCceEEEEcccCChHHHH
Q 006272 257 -IDL---------SSLKFRVLDEADEMLRMGF--------VEDVELILGKVEDANKVQTLLFSATLPSWVKH 310 (652)
Q Consensus 257 -~~l---------~~~~~lViDEah~~l~~gf--------~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~ 310 (652)
..+ +.=.+|||||||.+-+..- ...+..+-..+| +.+++.+|||-..+..+
T Consensus 158 ~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP---~ARvvY~SATgasep~N 226 (303)
T PF13872_consen 158 RSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP---NARVVYASATGASEPRN 226 (303)
T ss_pred cchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC---CCcEEEecccccCCCce
Confidence 111 1124899999999876532 134444555565 45799999997665443
No 182
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.07 E-value=1.3e-05 Score=87.62 Aligned_cols=141 Identities=26% Similarity=0.348 Sum_probs=88.3
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEccCCCCchhhhHHHHH---HHHhCCCCCC----cc--------c--C-------
Q 006272 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPIL---ESLTNGPTKA----SK--------K--T------- 182 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l----~~~dvl~~a~TGsGKTl~~~lpil---~~l~~~~~~~----~~--------~--~------- 182 (652)
+|+|.|...+..++ ...+.++-.|||+||||+.+-..| +++....... .. . .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 67899988776555 567899999999999987554333 3332110000 00 0 0
Q ss_pred C-----CCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEe-----------------------------------
Q 006272 183 G-----YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY----------------------------------- 222 (652)
Q Consensus 183 ~-----~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~----------------------------------- 222 (652)
. +-.-|.+.+-+-|-.-..|+.+++++.+-.. +..++-
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~v--kmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRV--KMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCCC--ceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 0 0124677888888888889999998754221 111110
Q ss_pred ------------------------------CCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCC--cCCCCceEEecCcc
Q 006272 223 ------------------------------GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLDEA 270 (652)
Q Consensus 223 ------------------------------gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~--~~l~~~~~lViDEa 270 (652)
.+.++-. .+.+...++||+|-+.-|++-..+.. ++|.+ ..||||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfa-SR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEA 256 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFA-SRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEA 256 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchh-hhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEecc
Confidence 0011111 14555568999999999998877654 56655 78999999
Q ss_pred hhhhh
Q 006272 271 DEMLR 275 (652)
Q Consensus 271 h~~l~ 275 (652)
|.|.+
T Consensus 257 HNiEd 261 (945)
T KOG1132|consen 257 HNIED 261 (945)
T ss_pred ccHHH
Confidence 99853
No 183
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.05 E-value=3.1e-05 Score=71.39 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=72.9
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC------CcccccccchHHHHHHHhhhcCCCceEEEEcc--ccccCCCCCC--ccEE
Q 006272 362 SGGRTIIFTETKESASQLADLLPG------ARALHGDIQQSQREVTLAGFRSGKFMTLVATN--VAARGLDIND--VQLI 431 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~~------~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~--~~~~Gldi~~--v~~V 431 (652)
.++.+|||++|....+.+...+.. ...+.. ....+..+++.|+.+.-.||+|+. .+..|||+++ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 358999999999999999999873 233333 467889999999999999999998 9999999996 7789
Q ss_pred EEcCCCC----CH--------------------------HHHHHHhhhcccCCCcccceeeccCCc
Q 006272 432 IQCEPPR----DV--------------------------EAYIHRSGRTGRAGVEAAETITQVSDS 467 (652)
Q Consensus 432 I~~~~p~----s~--------------------------~~y~qr~GR~gR~g~~~~~~i~~~~~~ 467 (652)
|...+|. ++ ....|-+||+-|...+-.. +++.+..
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~-i~llD~R 150 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGV-IILLDSR 150 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEE-EEEESGG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEE-EEEEcCc
Confidence 9988874 11 1235889999999876444 4444444
No 184
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.04 E-value=2.9e-05 Score=81.84 Aligned_cols=64 Identities=23% Similarity=0.312 Sum_probs=53.3
Q ss_pred CChHHHHHHHHHHhcCCc-EEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~d-vl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 207 (652)
.+.+-|.+|+..+.+.++ .++++|+|+|||.+...-|.+.+..+. ++||..||.+-+..+.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k-------------~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKK-------------RVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCC-------------eEEEEcCchHHHHHHHHHh
Confidence 467889999999998866 689999999999987777777776543 5999999999888888854
No 185
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.89 E-value=0.00012 Score=69.31 Aligned_cols=127 Identities=19% Similarity=0.264 Sum_probs=80.9
Q ss_pred ccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhc---CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD---GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 111 ~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~---~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
|+.+..+..++=.+.. ++ -++|.|.+....+.+ +++.+.+.-+|.|||.+ .+|++..+..+...
T Consensus 5 w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~---------- 71 (229)
T PF12340_consen 5 WDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR---------- 71 (229)
T ss_pred CCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc----------
Confidence 4445555555544432 33 589999998888774 57999999999999986 57877777654321
Q ss_pred CeEEEEeccHHHHHHHHHHHHH-HhcCCCceEEE--EeCCcchHH--------HHHHhcCCCcEEEeCcHHHHHHH
Q 006272 188 PSVLVLLPTRELAKQVHEDFDV-YGGAVGLTSCC--LYGGAPYHA--------QEFKLKKGIDVVIGTPGRIKDHI 252 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~-~~~~~~~~~~~--~~gg~~~~~--------~~~~~~~~~~Ilv~Tp~rl~~~l 252 (652)
-+.+++| ++|..|..+.+.. ++.-.+-.+.. +.-...... ........-.|+++||+.++.+.
T Consensus 72 -LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 72 -LVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred -EEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 3667777 4899999998874 43333333332 222222211 11122334679999999987654
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.88 E-value=5.8e-05 Score=78.75 Aligned_cols=108 Identities=17% Similarity=0.199 Sum_probs=67.8
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcch
Q 006272 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~ 227 (652)
-++|.+..|||||+..+-. +..+... ..+..++++++...|...+...+.....
T Consensus 3 v~~I~G~aGTGKTvla~~l-~~~l~~~----------~~~~~~~~l~~n~~l~~~l~~~l~~~~~--------------- 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNL-AKELQNS----------EEGKKVLYLCGNHPLRNKLREQLAKKYN--------------- 56 (352)
T ss_pred EEEEEecCCcCHHHHHHHH-HHHhhcc----------ccCCceEEEEecchHHHHHHHHHhhhcc---------------
Confidence 4789999999999865433 3333111 1223589999999999988887754320
Q ss_pred HHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC-------cHHHHHHHHHh
Q 006272 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-------FVEDVELILGK 288 (652)
Q Consensus 228 ~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g-------f~~~~~~i~~~ 288 (652)
.......+..|..+...+.........+++|||||||+|.+.+ ....+..++..
T Consensus 57 -------~~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 -------PKLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -------cchhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0012234444555544433223346778999999999998732 24566666655
No 187
>PRK10536 hypothetical protein; Provisional
Probab=97.86 E-value=0.00014 Score=70.45 Aligned_cols=142 Identities=15% Similarity=0.133 Sum_probs=81.4
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHH------
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA------ 200 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa------ 200 (652)
.++...+..|...+.++.++..+++.+|+|||||+......++.+..... -+++|.=|+.+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~-----------~kIiI~RP~v~~ge~LGfL 123 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDV-----------DRIIVTRPVLQADEDLGFL 123 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCe-----------eEEEEeCCCCCchhhhCcC
Confidence 35566788999999999988889999999999999877777766644321 1356666664321
Q ss_pred -----HHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh-c-CCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhh
Q 006272 201 -----KQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL-K-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (652)
Q Consensus 201 -----~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~-~-~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~ 273 (652)
..+.-++.-+...+.. +.+.. ....+ . ..-.|-|.... +++-.. +.+ .+||||||+.+
T Consensus 124 PG~~~eK~~p~~~pi~D~L~~----~~~~~----~~~~~~~~~~~~Iei~~l~----ymRGrt--l~~-~~vIvDEaqn~ 188 (262)
T PRK10536 124 PGDIAEKFAPYFRPVYDVLVR----RLGAS----FMQYCLRPEIGKVEIAPFA----YMRGRT--FEN-AVVILDEAQNV 188 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHHH----HhChH----HHHHHHHhccCcEEEecHH----HhcCCc--ccC-CEEEEechhcC
Confidence 1111111111100000 01111 11111 1 12335555432 222223 333 79999999977
Q ss_pred hhcCcHHHHHHHHHhccCCCCceEEEE
Q 006272 274 LRMGFVEDVELILGKVEDANKVQTLLF 300 (652)
Q Consensus 274 l~~gf~~~~~~i~~~~~~~~~~q~l~~ 300 (652)
. ..++..++..+.. +.++++.
T Consensus 189 ~----~~~~k~~ltR~g~--~sk~v~~ 209 (262)
T PRK10536 189 T----AAQMKMFLTRLGE--NVTVIVN 209 (262)
T ss_pred C----HHHHHHHHhhcCC--CCEEEEe
Confidence 5 5788888888876 5566653
No 188
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.85 E-value=4.7e-05 Score=73.65 Aligned_cols=87 Identities=28% Similarity=0.375 Sum_probs=67.1
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCc-chHHHHHHhc-CCCcEEEeCcHHHHHHHHhCCcCCCCc
Q 006272 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA-PYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSL 262 (652)
Q Consensus 185 ~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~l~~~ 262 (652)
...|.+||||.+---|..+.+.++.+.. .+..+.-++.-. ...+|...+. ..++|.||||+||..+++.+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 4578899999987777788877777631 123344444443 5677777776 478999999999999999999999999
Q ss_pred eEEecCcchh
Q 006272 263 KFRVLDEADE 272 (652)
Q Consensus 263 ~~lViDEah~ 272 (652)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998663
No 189
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=97.81 E-value=4.1e-05 Score=59.63 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=47.9
Q ss_pred EEEEEecCCC-ccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecChhhHHHHHhhcc----CCCceeeee
Q 006272 517 VTVVLEAGKP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGAD----NAANVSLEV 587 (652)
Q Consensus 517 ~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~~~a~~~~~~~~----~~~~i~l~~ 587 (652)
++++++.|++ ...+.++.++|++..+... .+|++|++.+ .++||++|.+.++.++..++ .++.+.++.
T Consensus 1 vrl~in~Gr~dg~~~~~iv~~i~~~~gi~~-~~IG~I~I~~--~~S~vev~~~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 1 VRLFINVGRKDGLTPRDIVGAICNEAGIPG-RDIGRIDIFD--NFSFVEVPEEVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp -EEEES-SGGGT--HHHHHHHHHTCTTB-G-GGEEEEEE-S--S-EEEEE-TT-HHHHHHHHTT--SSS----EEE
T ss_pred CEEEEEcccccCCCHHHHHHHHHhccCCCH-HhEEEEEEee--eEEEEEECHHHHHHHHHHhcCCCCCCeeEEEEE
Confidence 5899999999 7899999999999876654 7999999999 89999999999999998877 445555443
No 190
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.80 E-value=0.00019 Score=79.25 Aligned_cols=141 Identities=18% Similarity=0.144 Sum_probs=83.6
Q ss_pred ChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006272 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (652)
Q Consensus 132 ~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 211 (652)
..++|+.|+-..+.++-+++.+++|||||.+..- ++..+..... ....++++++||..-|..+.+.+....
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~--------~~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQLAD--------GERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHhcC--------CCCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 3589999999999999999999999999986432 2222221100 112468999999998888887765433
Q ss_pred cCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHH------hCCcCCCCceEEecCcchhhhhcCcHHHHHHH
Q 006272 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE------RGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285 (652)
Q Consensus 212 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~------~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i 285 (652)
...++. ..+......-..|--+|+.... ...-+.-.+++||||||-.+ + ...+..+
T Consensus 224 ~~~~~~--------------~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~l 285 (615)
T PRK10875 224 RQLPLT--------------DEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARL 285 (615)
T ss_pred hccccc--------------hhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHH
Confidence 222110 0000001112233223322111 11112334689999999955 3 5667778
Q ss_pred HHhccCCCCceEEEEc
Q 006272 286 LGKVEDANKVQTLLFS 301 (652)
Q Consensus 286 ~~~~~~~~~~q~l~~S 301 (652)
+..++. ..++|++-
T Consensus 286 l~al~~--~~rlIlvG 299 (615)
T PRK10875 286 IDALPP--HARVIFLG 299 (615)
T ss_pred HHhccc--CCEEEEec
Confidence 888876 56777763
No 191
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.76 E-value=0.00021 Score=79.98 Aligned_cols=66 Identities=23% Similarity=0.258 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHHhcC-CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~-~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
.+++.|..|+..++.. ..+++.+|+|||||.+..-.+.+.+..+ .++|+++||..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g-------------~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRG-------------LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcC-------------CCEEEEcCcHHHHHHHHHHHHh
Confidence 5689999999998876 5688999999999976554444444332 2599999999999888888765
No 192
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.73 E-value=0.00018 Score=79.78 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=82.9
Q ss_pred CeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCC-ce-EEEEccccccCCCCCCccEEEEcCCC
Q 006272 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK-FM-TLVATNVAARGLDINDVQLIIQCEPP 437 (652)
Q Consensus 364 ~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~-~~-vLvaT~~~~~Gldi~~v~~VI~~~~p 437 (652)
.++|||++-..-+..++..|. ....+-|.|+...|...+..|..+. .. .|++..+..-|+++-...||+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 489999998888887777665 4556789999999999999998543 33 35677899999999999999999999
Q ss_pred CCHHHHHHHhhhcccCCCccccee
Q 006272 438 RDVEAYIHRSGRTGRAGVEAAETI 461 (652)
Q Consensus 438 ~s~~~y~qr~GR~gR~g~~~~~~i 461 (652)
+++..--|-+-|+.|-|..--..|
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999997765555
No 193
>PF13245 AAA_19: Part of AAA domain
Probab=97.72 E-value=0.0001 Score=57.65 Aligned_cols=60 Identities=30% Similarity=0.370 Sum_probs=40.4
Q ss_pred HHHHHhc-CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHH
Q 006272 139 TFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (652)
Q Consensus 139 ~i~~~l~-~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 207 (652)
+|...+. +.-+++.+|+|||||.+.+-.+...+..... . +-++||++||+..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~--------~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARAD--------P-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC--------C-CCeEEEECCCHHHHHHHHHHH
Confidence 4443344 4446669999999997665555555432110 1 236999999999999988877
No 194
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.68 E-value=0.00047 Score=76.12 Aligned_cols=140 Identities=16% Similarity=0.132 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006272 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (652)
Q Consensus 133 ~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 212 (652)
.++|+.|+..++.++-+++.++.|||||.+..- ++..+...... ...+++++++||---|..+.+.+.....
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~~~-------~~~~~I~l~APTGkAA~rL~e~~~~~~~ 218 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVAR-LLLALVKQSPK-------QGKLRIALAAPTGKAAARLAESLRKAVK 218 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHH-HHHHHHHhccc-------cCCCcEEEECCcHHHHHHHHHHHHhhhc
Confidence 379999999999999999999999999985332 22222211000 0124699999998888877776654322
Q ss_pred CCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHH------hCCcCCCCceEEecCcchhhhhcCcHHHHHHHH
Q 006272 213 AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE------RGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (652)
Q Consensus 213 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~------~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~ 286 (652)
..... . .......+-..|--+|+.... ...-+.-.+++||||||-.+- ...+..++
T Consensus 219 ~l~~~----------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll 280 (586)
T TIGR01447 219 NLAAA----------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLL 280 (586)
T ss_pred ccccc----------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHH
Confidence 11110 0 000011122344333332211 011123357899999999553 45677788
Q ss_pred HhccCCCCceEEEE
Q 006272 287 GKVEDANKVQTLLF 300 (652)
Q Consensus 287 ~~~~~~~~~q~l~~ 300 (652)
..++. ..++|++
T Consensus 281 ~al~~--~~rlIlv 292 (586)
T TIGR01447 281 KALPP--NTKLILL 292 (586)
T ss_pred HhcCC--CCEEEEE
Confidence 88876 5677766
No 195
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.58 E-value=0.00074 Score=76.77 Aligned_cols=131 Identities=23% Similarity=0.188 Sum_probs=77.3
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.++ .+++.|.+|+..+..++-+++.++.|||||.+. -.+++.+.... ....+++++||-.-|..+.+.
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~----------~~~~v~l~ApTg~AA~~L~e~ 387 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG----------GLLPVGLAAPTGRAAKRLGEV 387 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC----------CCceEEEEeCchHHHHHHHHh
Confidence 444 689999999999998899999999999999753 23333333211 012488899998777655432
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHH
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~ 286 (652)
. +....+ +. ..+... ++..... ..-.....++||||||+.+. ...+..++
T Consensus 388 ~-------g~~a~T------ih---~lL~~~-------~~~~~~~---~~~~~~~~~llIvDEaSMvd----~~~~~~Ll 437 (720)
T TIGR01448 388 T-------GLTAST------IH---RLLGYG-------PDTFRHN---HLEDPIDCDLLIVDESSMMD----TWLALSLL 437 (720)
T ss_pred c-------CCcccc------HH---HHhhcc-------CCccchh---hhhccccCCEEEEeccccCC----HHHHHHHH
Confidence 1 211111 00 001000 0000000 00012346899999999663 45567777
Q ss_pred HhccCCCCceEEEEc
Q 006272 287 GKVEDANKVQTLLFS 301 (652)
Q Consensus 287 ~~~~~~~~~q~l~~S 301 (652)
..++. ..++|++-
T Consensus 438 ~~~~~--~~rlilvG 450 (720)
T TIGR01448 438 AALPD--HARLLLVG 450 (720)
T ss_pred HhCCC--CCEEEEEC
Confidence 77765 56777763
No 196
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.40 E-value=0.0018 Score=75.15 Aligned_cols=127 Identities=24% Similarity=0.218 Sum_probs=77.1
Q ss_pred CCCCCChHHHHHHHHHHhcCCc-EEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~d-vl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~ 205 (652)
.|+ .+++-|.+++..++.+++ +++.+..|+|||++ +-.+.+.+... +.+++.++||---|..+.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~------------G~~V~~~ApTGkAA~~L~e 408 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA------------GYEVRGAALSGIAAENLEG 408 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc------------CCeEEEecCcHHHHHHHhh
Confidence 454 699999999999998655 78999999999985 33444444321 2358999999765544332
Q ss_pred HHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHH
Q 006272 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285 (652)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i 285 (652)
..++.. .|-.+|+.....+...+...++||||||-.+. ...+..+
T Consensus 409 -------~tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~L 453 (988)
T PRK13889 409 -------GSGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERV 453 (988)
T ss_pred -------ccCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHH
Confidence 122211 12122221112223346677899999999654 3455666
Q ss_pred HHhccCCCCceEEEEccc
Q 006272 286 LGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 286 ~~~~~~~~~~q~l~~SAT 303 (652)
+...... ..++|++-=+
T Consensus 454 L~~a~~~-garvVLVGD~ 470 (988)
T PRK13889 454 LSHAADA-GAKVVLVGDP 470 (988)
T ss_pred HHhhhhC-CCEEEEECCH
Confidence 6554322 4567766433
No 197
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.32 E-value=0.0032 Score=72.00 Aligned_cols=122 Identities=20% Similarity=0.176 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHhcC-CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~-~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
.+++-|.+|+..++.+ +-+++.+++|+|||...- .+++.+... +..+++++||--.|..+.+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~~------------g~~V~~~ApTg~Aa~~L~~~--- 415 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEAA------------GYRVIGAALSGKAAEGLQAE--- 415 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHhC------------CCeEEEEeCcHHHHHHHHhc---
Confidence 5899999999998874 668999999999997533 334333321 23589999997665544321
Q ss_pred HhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhc
Q 006272 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (652)
Q Consensus 210 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~ 289 (652)
.++... |-.+++..+..+...+...++||||||-.+. ...+..++...
T Consensus 416 ----~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~----~~~~~~Ll~~~ 463 (744)
T TIGR02768 416 ----SGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVG----SRQMARVLKEA 463 (744)
T ss_pred ----cCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCC----HHHHHHHHHHH
Confidence 222221 1112211122222335678999999999664 33444555543
Q ss_pred cCCCCceEEEEc
Q 006272 290 EDANKVQTLLFS 301 (652)
Q Consensus 290 ~~~~~~q~l~~S 301 (652)
... ..++|++-
T Consensus 464 ~~~-~~kliLVG 474 (744)
T TIGR02768 464 EEA-GAKVVLVG 474 (744)
T ss_pred Hhc-CCEEEEEC
Confidence 321 45666653
No 198
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.21 E-value=0.0011 Score=68.08 Aligned_cols=124 Identities=21% Similarity=0.126 Sum_probs=76.4
Q ss_pred ChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006272 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (652)
Q Consensus 132 ~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 211 (652)
+|+-|.++|.. ...+++|.|..|||||.+.+.-++..+..... ...++|+|++|+..|..+.+.+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~---------~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV---------PPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS---------TGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccC---------ChHHheecccCHHHHHHHHHHHHHhc
Confidence 57889999988 78899999999999999887777776665421 12359999999999999999888754
Q ss_pred cCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCC--CceEEecCcchh
Q 006272 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLS--SLKFRVLDEADE 272 (652)
Q Consensus 212 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~--~~~~lViDEah~ 272 (652)
....... ...............+.|+|-..+...+.+...... .-.+-++|+...
T Consensus 70 ~~~~~~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~~ 126 (315)
T PF00580_consen 70 EEEQQES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEEQ 126 (315)
T ss_dssp HHCCHCC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHHH
T ss_pred Ccccccc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchhc
Confidence 3211000 000011111222356888998777655533221111 124567777763
No 199
>PRK04296 thymidine kinase; Provisional
Probab=97.14 E-value=0.00054 Score=64.59 Aligned_cols=109 Identities=18% Similarity=0.181 Sum_probs=58.0
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEecc---HHHHHHHHHHHHHHhcCCCceEEEEeC
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT---RELAKQVHEDFDVYGGAVGLTSCCLYG 223 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt---reLa~q~~~~~~~~~~~~~~~~~~~~g 223 (652)
.-.++.+|+|+|||+..+-.+......+ .+++|+-|. +....++ ....++...
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g-------------~~v~i~k~~~d~~~~~~~i-------~~~lg~~~~---- 58 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERG-------------MKVLVFKPAIDDRYGEGKV-------VSRIGLSRE---- 58 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcC-------------CeEEEEeccccccccCCcE-------ecCCCCccc----
Confidence 4468999999999976554444333332 247877663 3221111 111121110
Q ss_pred CcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 224 g~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
.+.+..+..++..+.. .-.++++|||||||.+- .+++..++..+... . ..+++++-
T Consensus 59 ---------------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~-g-~~vi~tgl 114 (190)
T PRK04296 59 ---------------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDL-G-IPVICYGL 114 (190)
T ss_pred ---------------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHc-C-CeEEEEec
Confidence 1223455556665544 23567899999998652 23455566664432 2 34444443
No 200
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.14 E-value=0.0008 Score=59.16 Aligned_cols=22 Identities=27% Similarity=0.143 Sum_probs=14.0
Q ss_pred cCCcEEEEccCCCCchhhhHHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lp 166 (652)
+++-+++.|++|+|||.+....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~ 24 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRL 24 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHH
Confidence 3467899999999999865443
No 201
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.0022 Score=67.78 Aligned_cols=153 Identities=21% Similarity=0.217 Sum_probs=77.0
Q ss_pred EEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH-HhcCCCceEEEEeCCcchHH
Q 006272 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV-YGGAVGLTSCCLYGGAPYHA 229 (652)
Q Consensus 151 ~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~-~~~~~~~~~~~~~gg~~~~~ 229 (652)
..+.||||||++..-.||+....+-. ..|+.|..-.........|-. +....=.+-...+++..+.-
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr------------~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~i 69 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYR------------NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEI 69 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchh------------hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeee
Confidence 35789999999887777776655432 256666655444433332211 00000000011111111110
Q ss_pred H----HHHhcCCCcEEEeCcHHHHHHHHhC---Cc---CCCCceEE-ecCcchhhhhcC---------cHHHHHHH-HHh
Q 006272 230 Q----EFKLKKGIDVVIGTPGRIKDHIERG---NI---DLSSLKFR-VLDEADEMLRMG---------FVEDVELI-LGK 288 (652)
Q Consensus 230 ~----~~~~~~~~~Ilv~Tp~rl~~~l~~~---~~---~l~~~~~l-ViDEah~~l~~g---------f~~~~~~i-~~~ 288 (652)
. ...-.+...|+++|...|...+-+. .+ ++.+..+| +-||||++-... -...|+.. +-.
T Consensus 70 kkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la 149 (812)
T COG3421 70 KKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLA 149 (812)
T ss_pred eeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHH
Confidence 0 0112345789999999998776442 23 34444444 559999985321 12222222 222
Q ss_pred ccCCCCceEEEEcccCChHHHHHHHHhc
Q 006272 289 VEDANKVQTLLFSATLPSWVKHISTKFL 316 (652)
Q Consensus 289 ~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (652)
+...+.--++.||||+|. -.....+|-
T Consensus 150 ~~~nkd~~~lef~at~~k-~k~v~~ky~ 176 (812)
T COG3421 150 LEQNKDNLLLEFSATIPK-EKSVEDKYE 176 (812)
T ss_pred HhcCCCceeehhhhcCCc-cccHHHHhc
Confidence 322223346679999983 344444553
No 202
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.05 E-value=0.0085 Score=70.09 Aligned_cols=139 Identities=18% Similarity=0.153 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHhc-CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEE
Q 006272 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (652)
Q Consensus 115 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~-~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 193 (652)
.+++..+......++ .+++-|.+++..+.. ++-++++++.|+|||++. -++.+.+... +.+++.+
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~~------------G~~V~g~ 431 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEAA------------GYRVVGG 431 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHHc------------CCeEEEE
Confidence 344544444444443 699999999998864 566899999999999753 3344444321 2358999
Q ss_pred eccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhh
Q 006272 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (652)
Q Consensus 194 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~ 273 (652)
+||---|..+.+. .++...++ .+++.....+...+..-++||||||-.+
T Consensus 432 ApTgkAA~~L~e~-------~Gi~a~TI------------------------as~ll~~~~~~~~l~~~~vlVIDEAsMv 480 (1102)
T PRK13826 432 ALAGKAAEGLEKE-------AGIQSRTL------------------------SSWELRWNQGRDQLDNKTVFVLDEAGMV 480 (1102)
T ss_pred cCcHHHHHHHHHh-------hCCCeeeH------------------------HHHHhhhccCccCCCCCcEEEEECcccC
Confidence 9996665544321 23333221 1111111112234566789999999965
Q ss_pred hhcCcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 274 LRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 274 l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
. ..++..++...+.. ..++|++-=+
T Consensus 481 ~----~~~m~~Ll~~~~~~-garvVLVGD~ 505 (1102)
T PRK13826 481 A----SRQMALFVEAVTRA-GAKLVLVGDP 505 (1102)
T ss_pred C----HHHHHHHHHHHHhc-CCEEEEECCH
Confidence 4 45666677666532 4567766433
No 203
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.04 E-value=0.0011 Score=64.47 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=18.9
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 006272 118 VPLREKLKSKGIESLFPIQAMTFDMVLD 145 (652)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~~l~ 145 (652)
-.|++.|+.++|.-+-.-|...-.++..
T Consensus 6 ~~lvdslk~l~~qg~~~k~~~lsral~a 33 (465)
T KOG3973|consen 6 LYLVDSLKALSFQGHCQKQENLSRALMA 33 (465)
T ss_pred HHHHHHHHHhccCCcccchhhHHHHHHc
Confidence 3577888888888777666655555543
No 204
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.0052 Score=63.54 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=66.3
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCc
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~ 225 (652)
+..+++.+|||+|||++....+...+..... .++.+++ +...-.--.+.++.++...++.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-----------~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~------ 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA-----------SKVALLT-TDSYRIGGHEQLRIFGKILGVPVH------ 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-----------CeEEEEe-cccccccHHHHHHHHHHHcCCceE------
Confidence 5679999999999999765544433322110 0233332 322211123444444443444332
Q ss_pred chHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC-cHHHHHHHHHhccCCCCceEEEEcccC
Q 006272 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATL 304 (652)
Q Consensus 226 ~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g-f~~~~~~i~~~~~~~~~~q~l~~SAT~ 304 (652)
.+-+++.+...+. .+.+.++|+||.+-+..... ..+.+..+..... ....++++|||.
T Consensus 199 ---------------~~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~--~~~~lLVLsAts 257 (374)
T PRK14722 199 ---------------AVKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADT--PVQRLLLLNATS 257 (374)
T ss_pred ---------------ecCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCC--CCeEEEEecCcc
Confidence 3344444444443 24566889999997542111 2223333222111 123477889998
Q ss_pred ChHH-HHHHHHhc
Q 006272 305 PSWV-KHISTKFL 316 (652)
Q Consensus 305 ~~~~-~~~~~~~~ 316 (652)
.... ...+..|.
T Consensus 258 ~~~~l~evi~~f~ 270 (374)
T PRK14722 258 HGDTLNEVVQAYR 270 (374)
T ss_pred ChHHHHHHHHHHH
Confidence 6544 44555554
No 205
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.94 E-value=0.011 Score=52.49 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCchhhh
Q 006272 146 GSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~ 163 (652)
++.+++.+|+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999643
No 206
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.93 E-value=0.0019 Score=64.60 Aligned_cols=143 Identities=20% Similarity=0.282 Sum_probs=82.9
Q ss_pred CCCCCChHHHHHHHHHHhcC--CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~--~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~ 204 (652)
.|+....-.|.-|+..++.- .=|.+.++.|||||+.++.+.++.....+. .-++||.=|+..+...+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~----------y~KiiVtRp~vpvG~dI- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR----------YRKIIVTRPTVPVGEDI- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh----------hceEEEecCCcCccccc-
Confidence 47766677888899988854 347899999999999888777777665432 12467777776544221
Q ss_pred HHHHHHhcCCCceEEEEeCCcc--hHHHHHHhcCC----CcEEEeCcHHHHHHHHhCCcCCCCc----------eEEecC
Q 006272 205 EDFDVYGGAVGLTSCCLYGGAP--YHAQEFKLKKG----IDVVIGTPGRIKDHIERGNIDLSSL----------KFRVLD 268 (652)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~gg~~--~~~~~~~~~~~----~~Ilv~Tp~rl~~~l~~~~~~l~~~----------~~lViD 268 (652)
..+-|... ...+...+.++ ...-=++.+.|...+.+..+.+..+ .+||||
T Consensus 293 --------------GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIID 358 (436)
T COG1875 293 --------------GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIID 358 (436)
T ss_pred --------------CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEe
Confidence 11111100 00001111000 0111122344545554444332221 589999
Q ss_pred cchhhhhcCcHHHHHHHHHhccCCCCceEEEE
Q 006272 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLF 300 (652)
Q Consensus 269 Eah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~ 300 (652)
||+.+- ..+++.|+..+-. ..+++++
T Consensus 359 EaQNLT----pheikTiltR~G~--GsKIVl~ 384 (436)
T COG1875 359 EAQNLT----PHELKTILTRAGE--GSKIVLT 384 (436)
T ss_pred hhhccC----HHHHHHHHHhccC--CCEEEEc
Confidence 999885 7788999999876 5566654
No 207
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.90 E-value=0.032 Score=57.51 Aligned_cols=133 Identities=18% Similarity=0.216 Sum_probs=71.9
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCC
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg 224 (652)
.++.+.+.||||.|||++..-.+....+... +.-.+||.+-|--.+. +++++.++.-+++.+..++.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~----------~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv~~- 268 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKK----------KKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVVYS- 268 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhcc----------CcceEEEEeccchhhH--HHHHHHHHHHhCCceEEecC-
Confidence 3788999999999999875533333331111 1124677777654432 45666666666665554444
Q ss_pred cchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhh-hcCcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l-~~gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
|.-|...+. .+.++++|.+|=|-+=. |.-....+..++..... ---.+.+|||
T Consensus 269 --------------------~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~--i~~~Lvlsat 322 (407)
T COG1419 269 --------------------PKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHS--IEVYLVLSAT 322 (407)
T ss_pred --------------------HHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhcccc--ceEEEEEecC
Confidence 444444433 24445566666554311 11134455555555432 2345678888
Q ss_pred CCh-HHHHHHHHhc
Q 006272 304 LPS-WVKHISTKFL 316 (652)
Q Consensus 304 ~~~-~~~~~~~~~~ 316 (652)
.-. .+......|-
T Consensus 323 ~K~~dlkei~~~f~ 336 (407)
T COG1419 323 TKYEDLKEIIKQFS 336 (407)
T ss_pred cchHHHHHHHHHhc
Confidence 754 3445555554
No 208
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.88 E-value=0.0045 Score=69.09 Aligned_cols=124 Identities=20% Similarity=0.165 Sum_probs=77.6
Q ss_pred CCChHHHHHHHHHHhcCCc-EEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~~~d-vl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 208 (652)
..+...|++|+-.++.-+| .++.+=+|||||.+....+--.+..++ ++|+.+=|-.-+..+--.++
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gk-------------kVLLtsyThsAVDNILiKL~ 734 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGK-------------KVLLTSYTHSAVDNILIKLK 734 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCC-------------eEEEEehhhHHHHHHHHHHh
Confidence 3677889999988887766 789999999999865544332233322 48888888776666665555
Q ss_pred HHhcCCCceEEEEeCCcchHHHH-----------------HHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcch
Q 006272 209 VYGGAVGLTSCCLYGGAPYHAQE-----------------FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271 (652)
Q Consensus 209 ~~~~~~~~~~~~~~gg~~~~~~~-----------------~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah 271 (652)
.+. +.+..+-.+....++. ...-+.+.||.+|-=-+.+.| |....+++.|||||-
T Consensus 735 ~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEAS 806 (1100)
T KOG1805|consen 735 GFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEAS 806 (1100)
T ss_pred ccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEcccc
Confidence 432 2222222222222111 222345789888854444333 234558999999999
Q ss_pred hhh
Q 006272 272 EML 274 (652)
Q Consensus 272 ~~l 274 (652)
.++
T Consensus 807 QI~ 809 (1100)
T KOG1805|consen 807 QIL 809 (1100)
T ss_pred ccc
Confidence 876
No 209
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.83 E-value=0.0029 Score=66.20 Aligned_cols=60 Identities=25% Similarity=0.290 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHH------hcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHH
Q 006272 131 SLFPIQAMTFDMV------LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (652)
Q Consensus 131 ~~~~~Q~~~i~~~------l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~ 203 (652)
.+++-|+.++..+ ..+..+++.++-|+|||..+ -.+....... +..+++++||---|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~~~~~-----------~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDYLRSR-----------GKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHHhccc-----------cceEEEecchHHHHHhc
Confidence 3677899998887 57788999999999999743 3333333321 22489999997666554
No 210
>PRK08181 transposase; Validated
Probab=96.78 E-value=0.014 Score=57.95 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=18.0
Q ss_pred HhcCCcEEEEccCCCCchhhhH
Q 006272 143 VLDGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~ 164 (652)
+-.++++++.||+|+|||....
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAA 124 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHH
Confidence 4477899999999999996433
No 211
>PRK06526 transposase; Provisional
Probab=96.68 E-value=0.0072 Score=59.55 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=21.9
Q ss_pred HHHhcCCcEEEEccCCCCchhhhHHHHHHHH
Q 006272 141 DMVLDGSDLVGRARTGQGKTLAFVLPILESL 171 (652)
Q Consensus 141 ~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l 171 (652)
..+..+.++++.||+|+|||........+..
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 3444678999999999999975544333333
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.67 E-value=0.019 Score=56.13 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=25.3
Q ss_pred CCCceEEecCcchhhhhcCcHH-HHHHHHHhccCCCCceEEEEccc
Q 006272 259 LSSLKFRVLDEADEMLRMGFVE-DVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~-~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
+.++++|||||++......+.. .+..|+..... ....+++.|--
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~-~~~~tiitSNl 204 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSS-SKRPTGMLTNS 204 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCCEEEeCCC
Confidence 4578899999999865333333 34445554322 13456655544
No 213
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.66 E-value=0.0072 Score=69.37 Aligned_cols=157 Identities=13% Similarity=0.097 Sum_probs=93.6
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCC-----cccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEE
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA-----SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~-----~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~ 219 (652)
.|+++++.-..|+|||.+-+...+..+-...... ..+........+|||||. ++..||..++...+... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 4578899999999999986655543321110000 000111122358999997 88899999998876543 5666
Q ss_pred EEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCC--------------cCCC----Cce--EEecCcchhhhhcCcH
Q 006272 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN--------------IDLS----SLK--FRVLDEADEMLRMGFV 279 (652)
Q Consensus 220 ~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~--------------~~l~----~~~--~lViDEah~~l~~gf~ 279 (652)
...|-.............+|||++|+..|...+.... +++. .+. -|++|||+.+ ... .
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMv-ess-s 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMV-ESS-S 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhh-cch-H
Confidence 5555332221111222359999999999987664321 1111 111 2799999954 443 4
Q ss_pred HHHHHHHHhccCCCCceEEEEcccCChHH
Q 006272 280 EDVELILGKVEDANKVQTLLFSATLPSWV 308 (652)
Q Consensus 280 ~~~~~i~~~~~~~~~~q~l~~SAT~~~~~ 308 (652)
......+..++. ....+.|.|.-..+
T Consensus 529 S~~a~M~~rL~~---in~W~VTGTPiq~I 554 (1394)
T KOG0298|consen 529 SAAAEMVRRLHA---INRWCVTGTPIQKI 554 (1394)
T ss_pred HHHHHHHHHhhh---hceeeecCCchhhh
Confidence 555566666653 56899999953333
No 214
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.63 E-value=0.071 Score=67.30 Aligned_cols=210 Identities=12% Similarity=0.130 Sum_probs=111.7
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~--~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 208 (652)
.+++-|.+++..++.. +-.++.++.|+|||.+. -.+++.+... +.++++++||-.-+.++.+...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~~------------G~~V~~lAPTgrAA~~L~e~~g 495 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASEQ------------GYEIQIITAGSLSAQELRQKIP 495 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHhc------------CCeEEEEeCCHHHHHHHHHHhc
Confidence 5889999999998875 56899999999999753 3333333221 2369999999877766655432
Q ss_pred HHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHh
Q 006272 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (652)
Q Consensus 209 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~ 288 (652)
..+ .. +......+.. ..-..|...++ .....+..-++||||||-.+. ..++..++..
T Consensus 496 ~~A-------~T------i~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~ 552 (1960)
T TIGR02760 496 RLA-------ST------FITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDK 552 (1960)
T ss_pred chh-------hh------HHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHH
Confidence 111 00 0111111111 11122222222 122335567899999999664 5667777766
Q ss_pred ccCCCCceEEEEccc--CCh----HHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhH-HHHHHhhC
Q 006272 289 VEDANKVQTLLFSAT--LPS----WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI-PDIIRCYS 361 (652)
Q Consensus 289 ~~~~~~~q~l~~SAT--~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~~~ 361 (652)
.... ..++||+-=+ ++. .+..++.. .....+.+..... ....+ .+.......+...+ ...+....
T Consensus 553 a~~~-garvVlvGD~~QL~sV~aG~~f~~L~~---~gv~t~~l~~i~r--q~~~v--~i~~~~~~~r~~~ia~~y~~L~~ 624 (1960)
T TIGR02760 553 AEQH-NSKLILLNDSAQRQGMSAGSAIDLLKE---GGVTTYAWVDTKQ--QKASV--EISEAVDKLRVDYIASAWLDLTP 624 (1960)
T ss_pred Hhhc-CCEEEEEcChhhcCccccchHHHHHHH---CCCcEEEeecccc--cCcce--eeeccCchHHHHHHHHHHHhccc
Confidence 5432 5678877444 222 22222222 1222333322111 11111 12222222333233 33333333
Q ss_pred CCCeEEEEecchhHHHHHHHhcC
Q 006272 362 SGGRTIIFTETKESASQLADLLP 384 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~ 384 (652)
....++|+..+..+...|....+
T Consensus 625 ~r~~tliv~~t~~dr~~Ln~~iR 647 (1960)
T TIGR02760 625 DRQNSQVLATTHREQQDLTQIIR 647 (1960)
T ss_pred ccCceEEEcCCcHHHHHHHHHHH
Confidence 33468999999999888887765
No 215
>PRK14974 cell division protein FtsY; Provisional
Probab=96.63 E-value=0.021 Score=58.44 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=39.1
Q ss_pred CCceEEecCcchhhh-hcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhc
Q 006272 260 SSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (652)
Q Consensus 260 ~~~~~lViDEah~~l-~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (652)
.+.++|+||.|.++. +..+...+..+...+.. ...+++++||........+..|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p--d~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKP--DLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCC--ceEEEeeccccchhHHHHHHHHH
Confidence 456799999999875 33456777777766543 45678899998776666666654
No 216
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.036 Score=57.96 Aligned_cols=132 Identities=18% Similarity=0.184 Sum_probs=69.6
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEecc-HHHHHHHHHHHHHHhcCCCceEEEEeCCc
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT-RELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt-reLa~q~~~~~~~~~~~~~~~~~~~~gg~ 225 (652)
+.+++.+|||+|||++..-.+......... .....+||-+-| |.-+.. +++.++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~--------~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~----- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDD--------KSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKA----- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhcc--------CCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEe-----
Confidence 568999999999998765433322221100 001123444443 333332 255555444544322
Q ss_pred chHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC-cHHHHHHHHHhccCCCCceEEEEcccC
Q 006272 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATL 304 (652)
Q Consensus 226 ~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g-f~~~~~~i~~~~~~~~~~q~l~~SAT~ 304 (652)
+-++..+...+.. +.+.++|+||++.++.... ....+..++..+.. ..-.++.+|||.
T Consensus 239 ----------------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~-~~e~~LVlsat~ 297 (388)
T PRK12723 239 ----------------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR-DAEFHLAVSSTT 297 (388)
T ss_pred ----------------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCC-CCeEEEEEcCCC
Confidence 2244455554443 4678999999999875211 23344445544432 123568899998
Q ss_pred ChH-HHHHHHHh
Q 006272 305 PSW-VKHISTKF 315 (652)
Q Consensus 305 ~~~-~~~~~~~~ 315 (652)
... +...+..|
T Consensus 298 ~~~~~~~~~~~~ 309 (388)
T PRK12723 298 KTSDVKEIFHQF 309 (388)
T ss_pred CHHHHHHHHHHh
Confidence 643 34444555
No 217
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.59 E-value=0.003 Score=69.57 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=42.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCC
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~ 175 (652)
.|.-.-|.+-+..+..++.+.+++....|+||||....+.++++..+..
T Consensus 402 tgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er 450 (1282)
T KOG0921|consen 402 TGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANER 450 (1282)
T ss_pred ccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhh
Confidence 3555668888999999999999999999999999999999998887643
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.57 E-value=0.056 Score=55.87 Aligned_cols=130 Identities=18% Similarity=0.210 Sum_probs=67.4
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEe-ccH-HHHHHHHHHHHHHhcCCCceEEEEeCC
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL-PTR-ELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~-Ptr-eLa~q~~~~~~~~~~~~~~~~~~~~gg 224 (652)
+.+++.+|||+|||+.....+......+. ..++|-+ |.| ..+.|+. .++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~Gk------------kVglI~aDt~RiaAvEQLk----~yae~lgipv------ 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKK------------TVGFITTDHSRIGTVQQLQ----DYVKTIGFEV------ 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCC------------cEEEEecCCcchHHHHHHH----HHhhhcCCcE------
Confidence 56889999999999876554443322211 1234444 334 2333333 3322222221
Q ss_pred cchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhc-CcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~-gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
+++.+|..+.+.+..-.- ..++++|+||-+=+.... .....+..++..... ..-++.+|||
T Consensus 300 ---------------~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~P--devlLVLsAT 361 (436)
T PRK11889 300 ---------------IAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEP--DYICLTLSAS 361 (436)
T ss_pred ---------------EecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCC--CeEEEEECCc
Confidence 224467777666543110 125788999988765422 123334444443322 2345668998
Q ss_pred CCh-HHHHHHHHhc
Q 006272 304 LPS-WVKHISTKFL 316 (652)
Q Consensus 304 ~~~-~~~~~~~~~~ 316 (652)
... .+...+..|-
T Consensus 362 tk~~d~~~i~~~F~ 375 (436)
T PRK11889 362 MKSKDMIEIITNFK 375 (436)
T ss_pred cChHHHHHHHHHhc
Confidence 654 5566666654
No 219
>PHA02533 17 large terminase protein; Provisional
Probab=96.50 E-value=0.017 Score=63.16 Aligned_cols=150 Identities=11% Similarity=0.047 Sum_probs=86.9
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.|.|+|...+..+..++-.++..+=..|||.+....++....... +..+++++|++.-|..+.+.++.+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~-----------~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK-----------DKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC-----------CCEEEEEeCCHHHHHHHHHHHHHH
Confidence 578999999988766666778888889999977655544333221 236999999999999988888755
Q ss_pred hcCCCc--eEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHh
Q 006272 211 GGAVGL--TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (652)
Q Consensus 211 ~~~~~~--~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~ 288 (652)
....+. ....... ......+.++..|.+.|.. .+...=.++.++|+||+|.+-+ +...+..+...
T Consensus 128 ie~~P~l~~~~i~~~----~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~ 194 (534)
T PHA02533 128 IELLPDFLQPGIVEW----NKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPV 194 (534)
T ss_pred HHhCHHHhhcceeec----CccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHH
Confidence 432210 1000000 0011112345556555422 1112223467899999997643 33444444444
Q ss_pred ccCCCCceEEEEcccC
Q 006272 289 VEDANKVQTLLFSATL 304 (652)
Q Consensus 289 ~~~~~~~q~l~~SAT~ 304 (652)
+......+++++|..-
T Consensus 195 lasg~~~r~iiiSTp~ 210 (534)
T PHA02533 195 ISSGRSSKIIITSTPN 210 (534)
T ss_pred HHcCCCceEEEEECCC
Confidence 4432233565665553
No 220
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.42 E-value=0.0092 Score=56.38 Aligned_cols=132 Identities=19% Similarity=0.213 Sum_probs=68.9
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEecc-HHHHHHHHHHHHHHhcCCCceEEEEeCCcc
Q 006272 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT-RELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt-reLa~q~~~~~~~~~~~~~~~~~~~~gg~~ 226 (652)
-+++++|||+|||.+..-.+......+.. .+||-+-| |.=| .++++.++...++.+.......
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~------------v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~~~- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKK------------VALISADTYRIGA---VEQLKTYAEILGVPFYVARTES- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--------------EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESSTTS-
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhcccc------------ceeecCCCCCccH---HHHHHHHHHHhccccchhhcch-
Confidence 36899999999998765444443333211 23444433 3222 3444444444455444322111
Q ss_pred hHHHHHHhcCCCcEEEeCcHHHH-HHHHhCCcCCCCceEEecCcchhhh-hcCcHHHHHHHHHhccCCCCceEEEEcccC
Q 006272 227 YHAQEFKLKKGIDVVIGTPGRIK-DHIERGNIDLSSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATL 304 (652)
Q Consensus 227 ~~~~~~~~~~~~~Ilv~Tp~rl~-~~l~~~~~~l~~~~~lViDEah~~l-~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~ 304 (652)
.|..+. +.+.. +..+++++|+||=+-+.. +......+..++..+.. ..-++.+|||.
T Consensus 67 -----------------~~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~--~~~~LVlsa~~ 125 (196)
T PF00448_consen 67 -----------------DPAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNP--DEVHLVLSATM 125 (196)
T ss_dssp -----------------CHHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSS--SEEEEEEEGGG
T ss_pred -----------------hhHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCC--ccceEEEeccc
Confidence 122221 22221 123456788888886543 22245666677766643 44677899998
Q ss_pred ChHHHHHHHHhc
Q 006272 305 PSWVKHISTKFL 316 (652)
Q Consensus 305 ~~~~~~~~~~~~ 316 (652)
.......+..+.
T Consensus 126 ~~~~~~~~~~~~ 137 (196)
T PF00448_consen 126 GQEDLEQALAFY 137 (196)
T ss_dssp GGHHHHHHHHHH
T ss_pred ChHHHHHHHHHh
Confidence 776655555544
No 221
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.42 E-value=0.0026 Score=75.72 Aligned_cols=90 Identities=24% Similarity=0.416 Sum_probs=76.0
Q ss_pred eEEEEecchhHHHHHHHhcC-----CCcccccccc-----------hHHHHHHHhhhcCCCceEEEEccccccCCCCCCc
Q 006272 365 RTIIFTETKESASQLADLLP-----GARALHGDIQ-----------QSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428 (652)
Q Consensus 365 ~~iVF~~s~~~~~~l~~~l~-----~~~~lh~~~~-----------~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v 428 (652)
..|+||+....+..+++++. .+..+.|.+. +..+..++..|....+.+|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 56899999999988888876 2223333322 2346789999999999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHhhhcccCC
Q 006272 429 QLIIQCEPPRDVEAYIHRSGRTGRAG 454 (652)
Q Consensus 429 ~~VI~~~~p~s~~~y~qr~GR~gR~g 454 (652)
+.|+.++.|.....|+|+.||+-++.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999998887
No 222
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.41 E-value=0.013 Score=57.62 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=54.0
Q ss_pred HHHhhhcCCCceEEEEccccccCCCCCCc--------cEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccC
Q 006272 400 VTLAGFRSGKFMTLVATNVAARGLDINDV--------QLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS 465 (652)
Q Consensus 400 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~v--------~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~ 465 (652)
...+.|.+|+..|+|.|++++.||.+..- ++-|...+|+|+...+|..||+.|.+......+.++.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~ 125 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLV 125 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEee
Confidence 55678999999999999999999987642 3566789999999999999999999986555444333
No 223
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.37 E-value=0.0062 Score=53.76 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
+..+++.+|+|||||....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 4678999999999998544
No 224
>PRK06893 DNA replication initiation factor; Validated
Probab=96.31 E-value=0.02 Score=55.78 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCCceEEecCcchhhhhc-CcHHHHHHHHHhccCCCCceEEEEcccCChH
Q 006272 259 LSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPSW 307 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~-gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~ 307 (652)
+.+.++|||||+|.+... .+...+..++..+... ..+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~-~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ-GKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc-CCcEEEEeCCCChH
Confidence 346789999999987532 2344555556555432 34567788887554
No 225
>PRK05642 DNA replication initiation factor; Validated
Probab=96.31 E-value=0.013 Score=57.22 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=29.1
Q ss_pred CCCceEEecCcchhhhhc-CcHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 259 LSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~-gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
+.++++||||++|.+... .+...+-.++..+... . ..+++++|.++
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~-g-~~ilits~~~p 141 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDS-G-RRLLLAASKSP 141 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhc-C-CEEEEeCCCCH
Confidence 345678999999977432 3455577777666542 2 45666776554
No 226
>PRK06921 hypothetical protein; Provisional
Probab=96.30 E-value=0.07 Score=53.08 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=19.0
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
.+..+++.++||+|||.... .+...+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHh
Confidence 35779999999999996432 3344443
No 227
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.28 E-value=0.056 Score=50.69 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=34.2
Q ss_pred EEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006272 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (652)
Q Consensus 149 vl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 211 (652)
+++.+|+|+|||...+-.+.+.+.++. .+++++. .+...++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~-------------~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGE-------------PGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCC-------------cEEEEEC-CCCHHHHHHHHHHcC
Confidence 689999999999866555555554432 3777764 467777777777664
No 228
>PRK08727 hypothetical protein; Validated
Probab=96.28 E-value=0.021 Score=55.80 Aligned_cols=17 Identities=29% Similarity=0.145 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCchhhh
Q 006272 147 SDLVGRARTGQGKTLAF 163 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~ 163 (652)
..+++.|++|+|||-..
T Consensus 42 ~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34999999999999643
No 229
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.21 E-value=0.017 Score=66.47 Aligned_cols=71 Identities=18% Similarity=0.128 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
..|+|-|.+++.+. ...++|.|..|||||.+..--+...+..... ..-++|+|+.|+..|..+.+.+..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v---------~p~~IL~lTFTnkAA~em~~Rl~~ 71 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENA---------SPHSIMAVTFTNKAAAEMRHRIGA 71 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCC---------CHHHeEeeeccHHHHHHHHHHHHH
Confidence 46899999998653 4689999999999998866555554433211 122599999999999999998887
Q ss_pred Hh
Q 006272 210 YG 211 (652)
Q Consensus 210 ~~ 211 (652)
+.
T Consensus 72 ~~ 73 (715)
T TIGR01075 72 LL 73 (715)
T ss_pred Hh
Confidence 64
No 230
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.21 E-value=0.017 Score=65.48 Aligned_cols=70 Identities=20% Similarity=0.148 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.+++-|.+++.+. ...++|.|..|||||.+...-+...+..... ..-++|+|+.|+..|..+.+.+..+
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v---------~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---------QARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCC---------CHHHeeeEechHHHHHHHHHHHHHH
Confidence 4788999998753 5678999999999999866666655543211 1225999999999999999888765
Q ss_pred h
Q 006272 211 G 211 (652)
Q Consensus 211 ~ 211 (652)
.
T Consensus 71 l 71 (672)
T PRK10919 71 L 71 (672)
T ss_pred h
Confidence 4
No 231
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.20 E-value=0.0018 Score=59.32 Aligned_cols=124 Identities=19% Similarity=0.156 Sum_probs=56.6
Q ss_pred EEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHH
Q 006272 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229 (652)
Q Consensus 150 l~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 229 (652)
++.|+-|-|||.+..+.+...+.... .+++|.+|+.+-++.+++.+..-....+++....... ..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~------------~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~ 65 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGK------------IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQ 65 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----------------EEEE-SS--S-HHHHHCC----------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcC------------ceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---cc
Confidence 57899999999987776654443321 3599999999988888877655443333332000000 00
Q ss_pred HHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCC
Q 006272 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (652)
Q Consensus 230 ~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 305 (652)
..........|-+..|+.+... ....++||||||=.+- .+.+..++.. ...++||.|+.
T Consensus 66 ~~~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~------~~~vv~stTi~ 124 (177)
T PF05127_consen 66 IIKLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRR------FPRVVFSTTIH 124 (177)
T ss_dssp -------CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCC------SSEEEEEEEBS
T ss_pred ccccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhh------CCEEEEEeecc
Confidence 0001112467777788766442 2235889999999764 4455555432 34667788864
No 232
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.18 E-value=0.026 Score=51.34 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=15.8
Q ss_pred EEEEccCCCCchhhhHHHHHH
Q 006272 149 LVGRARTGQGKTLAFVLPILE 169 (652)
Q Consensus 149 vl~~a~TGsGKTl~~~lpil~ 169 (652)
+++.+++|+|||......+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999865444333
No 233
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.11 E-value=0.01 Score=58.16 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=27.1
Q ss_pred cCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 257 IDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 257 ~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
.....++.+||||||.|... -+..+.+++...+. ...+++..--
T Consensus 125 ~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~--~trFiLIcny 168 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSR--TTRFILICNY 168 (346)
T ss_pred CCCCcceEEEEechhhhhHH-HHHHHHHHHhcccc--ceEEEEEcCC
Confidence 34566799999999998633 24455555555433 4555555443
No 234
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.11 E-value=0.022 Score=57.12 Aligned_cols=122 Identities=11% Similarity=-0.035 Sum_probs=58.5
Q ss_pred HHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEE
Q 006272 141 DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220 (652)
Q Consensus 141 ~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~ 220 (652)
--+..|.-+++.|+||+|||...+..+.+..... +..+++++- -+-..++...+........+....
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~------------g~~vl~iS~-E~~~~~~~~r~~~~~~~~~~~~~~ 91 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQH------------GVRVGTISL-EEPVVRTARRLLGQYAGKRLHLPD 91 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc------------CceEEEEEc-ccCHHHHHHHHHHHHhCCCcccCC
Confidence 3455678899999999999975544444433321 123667653 233444554443332122221110
Q ss_pred EeCCcchHH---HHHHhcCCCcEE-Ee-----CcHHHHHHHHhCCcCCCCceEEecCcchhhhhc
Q 006272 221 LYGGAPYHA---QEFKLKKGIDVV-IG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276 (652)
Q Consensus 221 ~~gg~~~~~---~~~~~~~~~~Il-v~-----Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~ 276 (652)
..-...... ....+.....+. +- |+..+...+..-. .-.++++||||..+.+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~-~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 92 TVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA-VSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred ccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEECCHHHHhcc
Confidence 000011111 112222212222 21 4455555554211 1236889999999988643
No 235
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.04 E-value=0.049 Score=52.88 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCCCchhhhHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVL 165 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~l 165 (652)
....+++.||+|+|||.....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999975543
No 236
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.02 E-value=0.063 Score=52.45 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=25.8
Q ss_pred ceEEecCcchhhhhc-CcHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 262 LKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 262 ~~~lViDEah~~l~~-gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
+++|||||+|.+... .+...+..++..+....+.+ +++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~-li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTR-LLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCe-EEEeCCCCh
Confidence 468999999987532 24445555665554322234 555666554
No 237
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.01 E-value=0.039 Score=66.94 Aligned_cols=63 Identities=27% Similarity=0.330 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEccCCCCchhhh--HHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAF--VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~--~dvl~~a~TGsGKTl~~--~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~ 204 (652)
.+++-|.+|+..++.. +-+++++..|+|||.+. ++-++..+... .+..++.++||---+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~-----------~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES-----------ERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc-----------cCceEEEEechHHHHHHHH
Confidence 6899999999999965 66999999999999863 22233332211 1235888999976665543
No 238
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.99 E-value=0.021 Score=65.66 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=53.7
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
..++|-|.+++.+. ...++|.|..|||||.+..--+...+..... ..-++|+|+-|+..|..+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v---------~p~~IL~lTFT~kAA~Em~~Rl~~ 76 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENA---------SPYSIMAVTFTNKAAAEMRHRIEQ 76 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCC---------ChhHeEeeeccHHHHHHHHHHHHH
Confidence 35899999998753 4689999999999998866555544432211 122599999999999999999887
Q ss_pred Hh
Q 006272 210 YG 211 (652)
Q Consensus 210 ~~ 211 (652)
+.
T Consensus 77 ~~ 78 (721)
T PRK11773 77 LL 78 (721)
T ss_pred Hh
Confidence 64
No 239
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.33 Score=52.40 Aligned_cols=130 Identities=19% Similarity=0.234 Sum_probs=63.7
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeE-EEEec-cHHHHHHHHHHHHHHhcCCCceEEEEe
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV-LVLLP-TRELAKQVHEDFDVYGGAVGLTSCCLY 222 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~-lil~P-treLa~q~~~~~~~~~~~~~~~~~~~~ 222 (652)
.++.+++++|||+|||......+......... .++ ||-+- .|..+. +.+..++...++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~g-----------kkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~-- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAP-----------RDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE-- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCC-----------CceEEEecccccccHH---HHHHHhhcccCceeEe--
Confidence 45778899999999998654433332222100 013 33332 343332 2333443333332221
Q ss_pred CCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhc-CcHHHHHHHHHhccCCCCceEEEEc
Q 006272 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFS 301 (652)
Q Consensus 223 gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~-gf~~~~~~i~~~~~~~~~~q~l~~S 301 (652)
+.++..+...+.. +.+.++||||.+=+.-.. .....+..+.... . ...+++++
T Consensus 413 -------------------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~--~a~lLVLp 466 (559)
T PRK12727 413 -------------------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-Q--VTSLLVLP 466 (559)
T ss_pred -------------------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHhh-c--CCcEEEEE
Confidence 1234455555543 456789999999754211 1222333333222 2 23577788
Q ss_pred ccCCh-HHHHHHHHhc
Q 006272 302 ATLPS-WVKHISTKFL 316 (652)
Q Consensus 302 AT~~~-~~~~~~~~~~ 316 (652)
+|... .+...+..|-
T Consensus 467 Atss~~Dl~eii~~f~ 482 (559)
T PRK12727 467 ANAHFSDLDEVVRRFA 482 (559)
T ss_pred CCCChhHHHHHHHHHH
Confidence 88643 3444444443
No 240
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.93 E-value=0.031 Score=59.47 Aligned_cols=147 Identities=14% Similarity=0.287 Sum_probs=82.2
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHH-HHHHHHHHHHHHhcCCCceEEEEeCCcc
Q 006272 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE-LAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptre-La~q~~~~~~~~~~~~~~~~~~~~gg~~ 226 (652)
-.++.+..|||||.+..+-++..+.... .+.++||+-|+.. |..-++..+.......++....-....+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~----------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~ 72 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK----------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSS 72 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC----------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCc
Confidence 3688999999999988887777776531 1246899999987 6666777776554444432211111110
Q ss_pred hHHHHHHhcC-CCcEEEeCc-HHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccC
Q 006272 227 YHAQEFKLKK-GIDVVIGTP-GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (652)
Q Consensus 227 ~~~~~~~~~~-~~~Ilv~Tp-~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~ 304 (652)
. .. .+.. +..|++..- +...+ +. ....+.++.+|||..+.. ..+..++..+........+++|.|+
T Consensus 73 ~--~i-~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP 140 (396)
T TIGR01547 73 M--EI-KILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNP 140 (396)
T ss_pred c--EE-EecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCc
Confidence 0 00 0111 344555443 11111 11 123368999999998842 3555555555432232357888887
Q ss_pred ChHHHHHHHHhc
Q 006272 305 PSWVKHISTKFL 316 (652)
Q Consensus 305 ~~~~~~~~~~~~ 316 (652)
+....-+...|+
T Consensus 141 ~~~~~w~~~~f~ 152 (396)
T TIGR01547 141 ESPLHWVKKRFI 152 (396)
T ss_pred CCCccHHHHHHH
Confidence 643333344444
No 241
>PRK12377 putative replication protein; Provisional
Probab=95.86 E-value=0.081 Score=51.85 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=28.4
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
...+++.+++|+|||.... .+.+.+.... ..++.++..+|..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~-AIa~~l~~~g-------------~~v~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAA-AIGNRLLAKG-------------RSVIVVTVPDVMSRLHES 147 (248)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHcC-------------CCeEEEEHHHHHHHHHHH
Confidence 3679999999999996433 3334443321 123445556777665543
No 242
>PRK08116 hypothetical protein; Validated
Probab=95.85 E-value=0.22 Score=49.68 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=18.8
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhC
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTN 173 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~ 173 (652)
.-+++.|++|+|||.... .+.+.+..
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~ 140 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIE 140 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 349999999999997544 35555543
No 243
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.85 E-value=0.041 Score=56.46 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=27.7
Q ss_pred CChHHHHHHHHHHhcC----CcEEEEccCCCCchhhhHHH
Q 006272 131 SLFPIQAMTFDMVLDG----SDLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~----~dvl~~a~TGsGKTl~~~lp 166 (652)
.++|||...+..+... +-+++.+|.|.|||..+...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~ 42 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL 42 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH
Confidence 3579999999887744 24889999999999765443
No 244
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.84 E-value=0.035 Score=63.48 Aligned_cols=69 Identities=20% Similarity=0.133 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006272 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (652)
Q Consensus 132 ~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 211 (652)
++|-|.+++.. ...+++|.|..|||||.+..--+...+..... ...++|+|+.|+..|.++.+.+....
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~---------~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY---------KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC---------CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68889998865 35689999999999999876666665543211 12258999999999999998887654
No 245
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.84 E-value=0.03 Score=58.96 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHhcCCcEEEEccCCCCchhhhH
Q 006272 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 132 ~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~ 164 (652)
+-......+..+..++++++.+|+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444556667778889999999999999997654
No 246
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.83 E-value=0.069 Score=61.44 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=25.8
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
....+++||||||+|.... .+.|.+++...+. .+.+|| ..|-+.
T Consensus 118 ~~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~--~~~fIl-~tt~~~ 161 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQG-FNALLKIVEEPPE--HLKFIF-ATTEPD 161 (824)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHHhCCCC--CeEEEE-EeCChh
Confidence 3568999999999986433 3444445544443 334444 335443
No 247
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.81 E-value=0.08 Score=65.21 Aligned_cols=65 Identities=26% Similarity=0.328 Sum_probs=44.4
Q ss_pred CCChHHHHHHHHHHhcC--CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~~--~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~ 203 (652)
..+++.|.+|+..++.+ +-+++++..|+|||...- .++..+.... ...+..++.++||---|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~--------~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLP--------ESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhh--------cccCceEEEECCcHHHHHHH
Confidence 36899999999999975 468999999999998532 2333322100 01123588899997766544
No 248
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.81 E-value=0.027 Score=61.32 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=82.2
Q ss_pred HHHHHHHHHHh-----cC----CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHH
Q 006272 134 PIQAMTFDMVL-----DG----SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (652)
Q Consensus 134 ~~Q~~~i~~~l-----~~----~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~ 204 (652)
|+|.-.+-.++ .+ +.+++.-+=+.|||+.....++..+.-.. ..+..+++++++++-|..++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g---------~~~~~i~~~A~~~~QA~~~f 71 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG---------EPGAEIYCAANTRDQAKIVF 71 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC---------ccCceEEEEeCCHHHHHHHH
Confidence 67887777666 12 35888889999999865554444443321 23457999999999999999
Q ss_pred HHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHh--CCcCCCCceEEecCcchhhhhcCcHHHH
Q 006272 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER--GNIDLSSLKFRVLDEADEMLRMGFVEDV 282 (652)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~--~~~~l~~~~~lViDEah~~l~~gf~~~~ 282 (652)
+.+..+........... . . .... .....|..-..+.++..+.+ +..+=.+..++|+||+|.+-+......+
T Consensus 72 ~~~~~~i~~~~~l~~~~-~-~----~~~~-~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l 144 (477)
T PF03354_consen 72 DEAKKMIEASPELRKRK-K-P----KIIK-SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDAL 144 (477)
T ss_pred HHHHHHHHhChhhccch-h-h----hhhh-hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHH
Confidence 99988765422111000 0 0 0000 00122333222333222222 2233345789999999988654333343
Q ss_pred HHHHHhccCCCCceEEEE
Q 006272 283 ELILGKVEDANKVQTLLF 300 (652)
Q Consensus 283 ~~i~~~~~~~~~~q~l~~ 300 (652)
..-.... .+++++..
T Consensus 145 ~~g~~~r---~~pl~~~I 159 (477)
T PF03354_consen 145 ESGMGAR---PNPLIIII 159 (477)
T ss_pred HhhhccC---CCceEEEE
Confidence 3333332 34455544
No 249
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.75 E-value=0.058 Score=56.38 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=32.0
Q ss_pred CCCCChHHHHHHHHHHh----cCCcEEEEccCCCCchhhhHHHHHHHHhC
Q 006272 128 GIESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (652)
Q Consensus 128 g~~~~~~~Q~~~i~~~l----~~~dvl~~a~TGsGKTl~~~lpil~~l~~ 173 (652)
-|...+|-|.+-+-.+. .+-+.++-.|+|+|||.+.+-.++.....
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~ 62 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLH 62 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHh
Confidence 45566777876654332 45679999999999998876655554443
No 250
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.73 E-value=0.21 Score=53.28 Aligned_cols=130 Identities=22% Similarity=0.257 Sum_probs=66.3
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHH-hCCCCCCcccCCCCCCCeEEEEecc-HHHHHHHHHHHHHHhcCCCceEEEEeC
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESL-TNGPTKASKKTGYGRAPSVLVLLPT-RELAKQVHEDFDVYGGAVGLTSCCLYG 223 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l-~~~~~~~~~~~~~~~~~~~lil~Pt-reLa~q~~~~~~~~~~~~~~~~~~~~g 223 (652)
++.+++.+|||+|||++....+.... ..... ..++|-+-+ |.-+ .+.+..++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~-----------~V~li~~D~~r~~a---~eqL~~~a~~~~vp~----- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKK-----------KVALITLDTYRIGA---VEQLKTYAKIMGIPV----- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC-----------eEEEEECCccHHHH---HHHHHHHHHHhCCce-----
Confidence 45789999999999986554333332 22111 013333333 3222 233333333233322
Q ss_pred CcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhh-hcCcHHHHHHHHHhccCCCCceEEEEcc
Q 006272 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSA 302 (652)
Q Consensus 224 g~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l-~~gf~~~~~~i~~~~~~~~~~q~l~~SA 302 (652)
..+.++..+...+.. +.+.++|+||-+-+.. +......+..++..... .....+++||
T Consensus 282 ----------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~-~~~~~LVl~a 340 (424)
T PRK05703 282 ----------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGE-PIDVYLVLSA 340 (424)
T ss_pred ----------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCC-CCeEEEEEEC
Confidence 223455555555543 3467899999886532 11223445555552211 1245778999
Q ss_pred cCChH-HHHHHHHh
Q 006272 303 TLPSW-VKHISTKF 315 (652)
Q Consensus 303 T~~~~-~~~~~~~~ 315 (652)
|.... +......|
T Consensus 341 ~~~~~~l~~~~~~f 354 (424)
T PRK05703 341 TTKYEDLKDIYKHF 354 (424)
T ss_pred CCCHHHHHHHHHHh
Confidence 88653 44444444
No 251
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.70 E-value=0.083 Score=56.91 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=26.5
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChH
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~ 307 (652)
....+++||||+|.|... ....+++.+..++..-+++|.+|-+..
T Consensus 114 ~~~~KVvIIDEah~Ls~~----A~NaLLK~LEePp~~v~fIlatte~~K 158 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNS----AFNALLKTLEEPAPHVKFILATTEVKK 158 (491)
T ss_pred cCCceEEEEeChHhCCHH----HHHHHHHHHhCCCCCeEEEEEeCChHH
Confidence 457899999999988643 344455555443333344455554433
No 252
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.67 E-value=0.24 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.117 Sum_probs=18.3
Q ss_pred CCcEEEEccCCCCchhhhHHHHHH
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILE 169 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~ 169 (652)
++.+++++|||+|||....-.+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999865544443
No 253
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.66 E-value=0.076 Score=54.07 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=30.6
Q ss_pred CCCChHHHHHHHHHHh----cCC---cEEEEccCCCCchhhhHHHHHHHHh
Q 006272 129 IESLFPIQAMTFDMVL----DGS---DLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 129 ~~~~~~~Q~~~i~~~l----~~~---dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
+..++|||..++..+. .++ -+++.+|.|+||+..+.. +.+.+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~Ll 51 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVL 51 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHh
Confidence 3568899999887765 333 489999999999975443 334444
No 254
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.65 E-value=0.062 Score=65.34 Aligned_cols=123 Identities=20% Similarity=0.191 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006272 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (652)
Q Consensus 132 ~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 211 (652)
+|+-|.++|. ..+++++|.|..|||||.+..--++..+..+.. .-++|+|+=|+..|..+.+.+....
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~----------~~~il~~tFt~~aa~e~~~ri~~~l 69 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVD----------IDRLLVVTFTNAAAREMKERIEEAL 69 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC----------HhhEEEEeccHHHHHHHHHHHHHHH
Confidence 6889999997 468899999999999999877777776654311 1248999999999988887776533
Q ss_pred cCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCc--eEEecCcchh
Q 006272 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL--KFRVLDEADE 272 (652)
Q Consensus 212 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~--~~lViDEah~ 272 (652)
... +. .........+.+..-...-|+|--.+...+.+.....-+| .+=|+||...
T Consensus 70 ~~~-~~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 70 QKA-LQ-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHH-Hh-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 110 00 0001111122233335677999888876665543322222 5667898875
No 255
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.19 Score=56.75 Aligned_cols=23 Identities=30% Similarity=0.177 Sum_probs=17.6
Q ss_pred CCcEEEEccCCCCchhhhHHHHH
Q 006272 146 GSDLVGRARTGQGKTLAFVLPIL 168 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil 168 (652)
++-+.+++|||+|||+++...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 34578999999999987655443
No 256
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.63 E-value=0.053 Score=61.29 Aligned_cols=73 Identities=25% Similarity=0.201 Sum_probs=52.9
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHH
Q 006272 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (652)
Q Consensus 128 g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 207 (652)
--..+++-|.+++-. ...+++|.|..|||||.+..--+...+..... ..-++|+|+.|+..|..+.+.+
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~---------~~~~IL~ltft~~AA~em~eRL 261 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQA---------QPEQILLLAFGRQAAEEMDERI 261 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC---------CHHHeEEEeccHHHHHHHHHHH
Confidence 335799999999854 34568999999999998765554444433211 1236999999999999998888
Q ss_pred HHHh
Q 006272 208 DVYG 211 (652)
Q Consensus 208 ~~~~ 211 (652)
....
T Consensus 262 ~~~l 265 (684)
T PRK11054 262 RERL 265 (684)
T ss_pred HHhc
Confidence 7653
No 257
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.62 E-value=0.26 Score=48.96 Aligned_cols=132 Identities=16% Similarity=0.184 Sum_probs=69.0
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccH--HHHHHHHHHHHHHhcCCCceEEEEe
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR--ELAKQVHEDFDVYGGAVGLTSCCLY 222 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr--eLa~q~~~~~~~~~~~~~~~~~~~~ 222 (652)
.+..+++.+++|+|||..+.+-+........ ...+|-+.+. ..+.|+...... .++.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~------------~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~--- 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKK------------TVGFITTDHSRIGTVQQLQDYVKT----IGFEVI--- 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCC------------eEEEEecCCCCHHHHHHHHHHhhh----cCceEE---
Confidence 4467899999999999976654433221111 1234444232 344454433322 222221
Q ss_pred CCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhh-cCcHHHHHHHHHhccCCCCceEEEEc
Q 006272 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFS 301 (652)
Q Consensus 223 gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~-~gf~~~~~~i~~~~~~~~~~q~l~~S 301 (652)
...+|..+.+.+..-. ...++++||||-+=+... ......+..++..... ..-++.+|
T Consensus 135 ------------------~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~--~~~~LVl~ 193 (270)
T PRK06731 135 ------------------AVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEP--DYICLTLS 193 (270)
T ss_pred ------------------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCC--CeEEEEEc
Confidence 1235555555443210 124578999999876531 1223444444444322 23466799
Q ss_pred ccCC-hHHHHHHHHhc
Q 006272 302 ATLP-SWVKHISTKFL 316 (652)
Q Consensus 302 AT~~-~~~~~~~~~~~ 316 (652)
||.. ......++.|-
T Consensus 194 a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 194 ASMKSKDMIEIITNFK 209 (270)
T ss_pred CccCHHHHHHHHHHhC
Confidence 9865 46666666664
No 258
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.60 E-value=0.059 Score=60.13 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=94.0
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEe
Q 006272 117 SVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (652)
Q Consensus 117 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~--~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~ 194 (652)
++..-..+.....+....-|.+.+..++.. +-+++.|.=|=|||.+..|.+........ ..+++|.+
T Consensus 200 ~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-----------~~~iiVTA 268 (758)
T COG1444 200 DPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-----------SVRIIVTA 268 (758)
T ss_pred CCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-----------CceEEEeC
Confidence 333334466666666666666677777754 35899999999999998877743322211 23699999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh-cCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhh
Q 006272 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL-KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (652)
Q Consensus 195 PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~-~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~ 273 (652)
|+.+-++.+.+.+.+-....+++-........ ..... .+...|-+.+|.... .. -++||||||=-+
T Consensus 269 P~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~---------~~-~DllvVDEAAaI 335 (758)
T COG1444 269 PTPANVQTLFEFAGKGLEFLGYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ---------EE-ADLLVVDEAAAI 335 (758)
T ss_pred CCHHHHHHHHHHHHHhHHHhCCcccccccccc---ceeeecCCceeEEeeCcchhc---------cc-CCEEEEehhhcC
Confidence 99998888887776554444443222111100 00000 112335566665432 11 578999999876
Q ss_pred hhcCcHHHHHHHHHhccCCCCceEEEEcccCC
Q 006272 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (652)
Q Consensus 274 l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 305 (652)
- .+-+..++... +.++||.|+.
T Consensus 336 p----lplL~~l~~~~------~rv~~sTTIh 357 (758)
T COG1444 336 P----LPLLHKLLRRF------PRVLFSTTIH 357 (758)
T ss_pred C----hHHHHHHHhhc------CceEEEeeec
Confidence 4 55566666443 5789999974
No 259
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.58 E-value=0.25 Score=50.69 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=19.3
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
.+.++++.|+||+|||.... .+...+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~ 208 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELL 208 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHH
Confidence 35789999999999997433 3444444
No 260
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.066 Score=57.13 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=15.7
Q ss_pred cEEEEccCCCCchhhhHHH
Q 006272 148 DLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lp 166 (652)
-+|+.||.|+|||.++.+.
T Consensus 42 a~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3799999999999876544
No 261
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.12 Score=54.55 Aligned_cols=133 Identities=15% Similarity=0.198 Sum_probs=63.9
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCC
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg 224 (652)
.+.-+.+.+|||+|||+.....+-..+..... ....+|.+.+--.+ ..+.+..++...++.+..+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~----------~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v--- 254 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGA----------DKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSI--- 254 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----------CeEEEEecCCcchh--HHHHHHHHHHHcCCceecC---
Confidence 35568899999999998765443322222110 11256666663332 2233444444344443322
Q ss_pred cchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhh-cCcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~-~gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
-++..+...+. .+.+.++++||.+=+.-. ......+..+..... ....++++|||
T Consensus 255 ------------------~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~--~~~~~LVl~at 310 (420)
T PRK14721 255 ------------------KDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGT--QVKHLLLLNAT 310 (420)
T ss_pred ------------------CCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCC--CceEEEEEcCC
Confidence 23333333332 245667788887632210 111233333322111 12356779999
Q ss_pred CChH-HHHHHHHhc
Q 006272 304 LPSW-VKHISTKFL 316 (652)
Q Consensus 304 ~~~~-~~~~~~~~~ 316 (652)
.... +.+....|-
T Consensus 311 ~~~~~~~~~~~~f~ 324 (420)
T PRK14721 311 SSGDTLDEVISAYQ 324 (420)
T ss_pred CCHHHHHHHHHHhc
Confidence 7554 444444443
No 262
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.52 E-value=0.14 Score=55.02 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=17.8
Q ss_pred CCcEEEEccCCCCchhhhHHHHH
Q 006272 146 GSDLVGRARTGQGKTLAFVLPIL 168 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil 168 (652)
++-+++.+|||+|||++....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 45688999999999997655443
No 263
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.52 E-value=0.059 Score=53.57 Aligned_cols=122 Identities=13% Similarity=0.148 Sum_probs=63.2
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH-HHhcCCCceEEEEeCCc
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGAVGLTSCCLYGGA 225 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~-~~~~~~~~~~~~~~gg~ 225 (652)
.+++++++|+-|||... ++.......... .....-|.++|-+|...-....|..+- .++....- ..
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d-~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~-------~~ 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSD-EDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP-------RD 128 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCC-CCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC-------CC
Confidence 57999999999999843 222211111111 112234677888888766655555543 22211100 00
Q ss_pred chHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCc--HHHHHHHHHhccCCCCceEEEE
Q 006272 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF--VEDVELILGKVEDANKVQTLLF 300 (652)
Q Consensus 226 ~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf--~~~~~~i~~~~~~~~~~q~l~~ 300 (652)
+.... . .....++. --++++|||||+|.++.... ...+...++.+.+...+.++++
T Consensus 129 ~~~~~-~-------------~~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 129 RVAKL-E-------------QQVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred CHHHH-H-------------HHHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 00000 0 00122222 45689999999999986653 3334445555554334556654
No 264
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.50 E-value=0.13 Score=55.18 Aligned_cols=91 Identities=21% Similarity=0.170 Sum_probs=61.7
Q ss_pred CCCHH-HHHHHHHCCCCCChH----HHHHHHHHHh--cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 115 RISVP-LREKLKSKGIESLFP----IQAMTFDMVL--DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 115 ~l~~~-l~~~l~~~g~~~~~~----~Q~~~i~~~l--~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
++.++ |+..|.+.--..+.. +|.+==..|. .++-+||++..|||||.+++--+...++...... ..
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l-------~~ 260 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL-------QA 260 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc-------cc
Confidence 34444 556677765555543 3444334444 4566999999999999988776666666543322 12
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhc
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGG 212 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~ 212 (652)
-.+||+.|.+-+..-+.+.+-.++.
T Consensus 261 k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 261 KPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred CceEEEcCcHHHHHHHHHhchhhcc
Confidence 2399999999999999998888764
No 265
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.48 E-value=0.075 Score=67.06 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=44.2
Q ss_pred CCChHHHHHHHHHHhcC--CcEEEEccCCCCchhhhH---HHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFV---LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~~--~dvl~~a~TGsGKTl~~~---lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~ 203 (652)
..+++.|.+|+..++.+ +-+++++..|+|||.... -++.+.+... +..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~------------g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESE------------QLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhc------------CCeEEEEeChHHHHHHH
Confidence 36899999999999866 457889999999998641 2333333221 23588899997665544
No 266
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=95.47 E-value=0.059 Score=48.04 Aligned_cols=70 Identities=7% Similarity=-0.064 Sum_probs=44.4
Q ss_pred cEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCcee
Q 006272 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANVS 584 (652)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i~ 584 (652)
-.+|+|..-....+..+++.++.. ++ .|..+.+..| ..++||++.+ ++|+.++..++ +++.+.
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~-~G-----~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAH-FG-----DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhc-CC-----CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 346777765555566677666655 33 3444444322 4799999988 77777777665 566677
Q ss_pred eeeccCC
Q 006272 585 LEVLKQL 591 (652)
Q Consensus 585 l~~~~~l 591 (652)
++.+...
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 7766543
No 267
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.42 E-value=0.025 Score=62.45 Aligned_cols=126 Identities=20% Similarity=0.148 Sum_probs=74.6
Q ss_pred CCChHHHHHHHHHHhcC--CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHH-HH
Q 006272 130 ESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH-ED 206 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~~--~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~-~~ 206 (652)
+..+|+|.+.+.++... +.|+++.++-+|||.+.+..+...+...+. .+|++.||.++|.... ..
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~------------~~l~v~Pt~~~a~~~~~~r 82 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPG------------PMLYVQPTDDAAKDFSKER 82 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCC------------CEEEEEEcHHHHHHHHHHH
Confidence 36789999999888754 679999999999999665555444444332 3899999999999876 55
Q ss_pred HHHHhcCCCceEEEEeC----CcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhh
Q 006272 207 FDVYGGAVGLTSCCLYG----GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~g----g~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l 274 (652)
|.-+......-...+.. ..........+. +..|.++..+.- ..+.-..+++|++||+|.+-
T Consensus 83 l~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 83 LDPMIRASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHHHHhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 55444332211111111 000000111111 233444332111 22344568999999999984
No 268
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.41 E-value=0.056 Score=52.15 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=32.5
Q ss_pred CCCceEEecCcchhhhhcC-cHHHHHHHHHhccCCCCceEEEEcccCChHH
Q 006272 259 LSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWV 308 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~g-f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~ 308 (652)
+..+++||||.+|.+.... ....+-.++..+... ..++|+.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~-~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES-GKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT-TSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh-CCeEEEEeCCCCccc
Confidence 4578899999999886532 455666666666543 457777776766544
No 269
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.34 E-value=0.087 Score=56.49 Aligned_cols=52 Identities=10% Similarity=0.122 Sum_probs=30.4
Q ss_pred CCCceEEecCcchhhhhcC-cHHHHHHHHHhccCCCCceEEEEcccCChHHHHH
Q 006272 259 LSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWVKHI 311 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~g-f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~ 311 (652)
+.++++|+|||+|.+.... ....+..++..+... ..++++.|-+.|..+..+
T Consensus 200 ~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~-~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 200 YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTE-GKLIVISSTCAPQDLKAM 252 (445)
T ss_pred cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHC-CCcEEEecCCCHHHHhhh
Confidence 3467899999999876432 344555555544332 345555554555555443
No 270
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.26 E-value=0.12 Score=55.12 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=32.4
Q ss_pred ceEEecCcchhhh-hcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhc
Q 006272 262 LKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (652)
Q Consensus 262 ~~~lViDEah~~l-~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (652)
.++||||.|-++. +......+..+...+.. ..-++.++||........+..|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~p--devlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKP--DEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcc--cceeEEEeccccHHHHHHHHHHH
Confidence 3789999995442 22234555555555433 44577788888766655555543
No 271
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.24 E-value=0.053 Score=62.55 Aligned_cols=71 Identities=20% Similarity=0.184 Sum_probs=54.3
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
..++|-|.+++.+. ...++|.|..|||||.+..--+...+..... ..-++|+++-|+..|..+.+.+..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i---------~P~~IL~lTFT~kAA~em~~Rl~~ 71 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNV---------APWNILAITFTNKAAREMKERVEK 71 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCC---------CHHHeeeeeccHHHHHHHHHHHHH
Confidence 45899999999753 5689999999999999876666655543211 112599999999999999988877
Q ss_pred Hh
Q 006272 210 YG 211 (652)
Q Consensus 210 ~~ 211 (652)
+.
T Consensus 72 ~~ 73 (726)
T TIGR01073 72 LL 73 (726)
T ss_pred Hh
Confidence 64
No 272
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.37 Score=50.55 Aligned_cols=129 Identities=13% Similarity=0.129 Sum_probs=63.9
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEecc-HHHHHHHHHHHHHHhcCCCceEEEEeCCc
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT-RELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt-reLa~q~~~~~~~~~~~~~~~~~~~~gg~ 225 (652)
.-+++++|||+|||+...-.+......... ..+|+-+-+ |..+.. .+..++...++.+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-----------~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~----- 284 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-----------SVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP----- 284 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCC-----------eEEEecccchhhhHHH---HHHHHHHhcCCCeee-----
Confidence 447899999999998766555433222111 012333333 443432 334443333332211
Q ss_pred chHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhh-hcCcHHHHHHHHHhccCC-CCceEEEEccc
Q 006272 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML-RMGFVEDVELILGKVEDA-NKVQTLLFSAT 303 (652)
Q Consensus 226 ~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l-~~gf~~~~~~i~~~~~~~-~~~q~l~~SAT 303 (652)
+..+..+...+. ..+.++||||=+-++. +..-...+..++...... +.-.++.+|||
T Consensus 285 ----------------~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt 343 (432)
T PRK12724 285 ----------------VKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSST 343 (432)
T ss_pred ----------------hHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCC
Confidence 111223334333 2456789999665442 222234445555443221 12356788999
Q ss_pred CCh-HHHHHHHHh
Q 006272 304 LPS-WVKHISTKF 315 (652)
Q Consensus 304 ~~~-~~~~~~~~~ 315 (652)
... .+...+..|
T Consensus 344 ~~~~~~~~~~~~f 356 (432)
T PRK12724 344 SSYHHTLTVLKAY 356 (432)
T ss_pred CCHHHHHHHHHHh
Confidence 877 444555544
No 273
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.19 E-value=0.16 Score=55.20 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=17.0
Q ss_pred CcEEEEccCCCCchhhhHHHH
Q 006272 147 SDLVGRARTGQGKTLAFVLPI 167 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpi 167 (652)
+.+|++||.|+|||.++.+.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 369999999999998765543
No 274
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.17 E-value=0.14 Score=51.06 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=15.8
Q ss_pred CcEEEEccCCCCchhhhHH
Q 006272 147 SDLVGRARTGQGKTLAFVL 165 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~l 165 (652)
.++++.+|+|+|||..+-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4789999999999986543
No 275
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.04 E-value=0.26 Score=50.74 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHHhc--C---CcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 132 LFPIQAMTFDMVLD--G---SDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 132 ~~~~Q~~~i~~~l~--~---~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
++|||...+..+.. + +-+++.+|.|.||+..+...+ ..+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A-~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA-QGLL 46 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH-HHHc
Confidence 36788888776653 2 358899999999998654433 3343
No 276
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.056 Score=59.61 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=26.9
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
....++|||||||.|. ......++..+..+...-+++|.+|-+.
T Consensus 117 ~g~~kVIIIDEad~Lt----~~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 117 EGRYKVFIIDEAHMLT----REAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred cCCceEEEEEChHhCC----HHHHHHHHHHhhccCCCEEEEEecCChh
Confidence 3557899999999885 3344555666544323334556566544
No 277
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.99 E-value=0.084 Score=58.98 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=24.2
Q ss_pred CCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCC
Q 006272 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (652)
Q Consensus 260 ~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 305 (652)
...+++||||+|.|.... .+.+.+++..-+. + -+++|++|-+
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~--~-v~FILaTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPP--H-VKFILATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCC--C-eEEEEEECCh
Confidence 457899999999886543 3334444444332 2 3444555543
No 278
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.99 E-value=0.2 Score=54.27 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=25.9
Q ss_pred CCceEEecCcchhhhhcC-cHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 260 SSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 260 ~~~~~lViDEah~~l~~g-f~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
.++++|||||+|.+.... ....+..++..+... ..+++ ++++.++
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~-~~~ii-its~~~p 255 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA-GKQIV-LTSDRPP 255 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC-CCcEE-EECCCCH
Confidence 357799999999875432 234455555555432 34554 4555443
No 279
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.97 E-value=0.32 Score=51.61 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=26.0
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
....+++||||+|.|.. .....++..+..++..-+++|.+|
T Consensus 125 ~~~~kvvIIdea~~l~~----~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSI----AAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCH----HHHHHHHHHHhcCCCCeEEEEEeC
Confidence 46678999999999863 344455555555433344555555
No 280
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.96 E-value=0.094 Score=56.60 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=24.5
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccC
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~ 304 (652)
....++|||||+|+|.. .....++..+..++..-++++++|-
T Consensus 115 ~~~~kVvIIDE~h~Lt~----~a~~~LLk~LE~p~~~vv~Ilattn 156 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTK----EAFNALLKTLEEPPSHVVFVLATTN 156 (472)
T ss_pred cCCeEEEEEEChHHhHH----HHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 45678999999998853 3344555555443232333444453
No 281
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.95 E-value=0.079 Score=53.94 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=43.2
Q ss_pred HHHHHCCCCCChHHHHHHHHHHh-cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHH
Q 006272 122 EKLKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (652)
Q Consensus 122 ~~l~~~g~~~~~~~Q~~~i~~~l-~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 200 (652)
..+.+.|. +++.|.+.|..+. .++++|++++||||||.. +-.++..+.... ..-+++++-.+.||.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~----------~~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA----------PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC----------CCceEEEecCCcccc
Confidence 34445554 5677887775554 678999999999999974 344555543211 112578888788874
No 282
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.16 Score=52.87 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=27.9
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
....-+||+||+|.|.+..- ..+..|+...... ..++.++.-+...
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~-~~~v~vi~i~n~~ 166 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-EVLYSLLRAPGEN-KVKVSIIAVSNDD 166 (366)
T ss_pred cCCeEEEEEcchhhhccccc-hHHHHHHhhcccc-ceeEEEEEEeccH
Confidence 34456899999999987653 5555555554432 4455554444333
No 283
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.93 E-value=0.068 Score=54.56 Aligned_cols=67 Identities=21% Similarity=0.274 Sum_probs=44.1
Q ss_pred HHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHH
Q 006272 121 REKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (652)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~-~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 199 (652)
+..|.+.|+ +++.|.+.+.. +..+++++++++||||||. ++-.++..+.... ...+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~----------~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQD----------PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcC----------CCceEEEEcCCCcc
Confidence 445555565 56778888865 4577899999999999995 4445554432111 12257888888877
Q ss_pred H
Q 006272 200 A 200 (652)
Q Consensus 200 a 200 (652)
.
T Consensus 191 ~ 191 (319)
T PRK13894 191 Q 191 (319)
T ss_pred c
Confidence 3
No 284
>CHL00181 cbbX CbbX; Provisional
Probab=94.93 E-value=0.32 Score=48.97 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCCchhhhHHH
Q 006272 146 GSDLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lp 166 (652)
+.++++.+|+|+|||..+-.-
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456999999999999865543
No 285
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.88 E-value=0.31 Score=54.17 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=17.0
Q ss_pred CcEEEEccCCCCchhhhHHHH
Q 006272 147 SDLVGRARTGQGKTLAFVLPI 167 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpi 167 (652)
+.+|+++|.|+|||.++.+.+
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999998765544
No 286
>PLN03025 replication factor C subunit; Provisional
Probab=94.87 E-value=0.3 Score=50.20 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=15.5
Q ss_pred CcEEEEccCCCCchhhhHH
Q 006272 147 SDLVGRARTGQGKTLAFVL 165 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~l 165 (652)
.++++.||+|+|||.....
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999975443
No 287
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.84 E-value=0.094 Score=57.11 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=24.9
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
....++|||||+|.|. ...+..++..+..+...-++++.++
T Consensus 114 ~~~~kVVIIDEad~ls----~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 114 RGGRKVYILDEAHMMS----KSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred cCCCeEEEEECccccC----HHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 4567899999999875 3445556666654322223444444
No 288
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.81 E-value=0.41 Score=53.25 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=25.7
Q ss_pred CCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 260 ~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
..++++||||+|+|.... ...+++.+..++..-+++|.+|-+.
T Consensus 123 g~~KV~IIDEvh~Ls~~a----~NaLLKtLEEPP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTA----FNAMLKTLEEPPEYLKFVLATTDPQ 165 (618)
T ss_pred CCceEEEEEChhhCCHHH----HHHHHHhcccCCCCeEEEEEECCch
Confidence 467899999999886433 4445555544333334445555444
No 289
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.81 E-value=0.4 Score=47.87 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=31.7
Q ss_pred CCceEEecCcchhhh-hcCcHHHHHHHHHhcc----CCCCceEEEEcccCChHHHHHHHHhc
Q 006272 260 SSLKFRVLDEADEML-RMGFVEDVELILGKVE----DANKVQTLLFSATLPSWVKHISTKFL 316 (652)
Q Consensus 260 ~~~~~lViDEah~~l-~~gf~~~~~~i~~~~~----~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (652)
.++++||||=+-++. +......+..+...+. ..+.--++.++||........+..|.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 445677777665542 2223445555554443 11244677899997765555555554
No 290
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.80 E-value=0.15 Score=50.00 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=39.4
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 212 (652)
.|..+++.+++|+|||+..+..+.+.+.++. .+++++ +.+-..|+.+.+..++.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge-------------~~lyvs-~ee~~~~i~~~~~~~g~ 73 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-------------PGIYVA-LEEHPVQVRRNMAQFGW 73 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-------------cEEEEE-eeCCHHHHHHHHHHhCC
Confidence 4578999999999999876666666664432 377777 55777788887776653
No 291
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.78 E-value=0.072 Score=47.30 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=36.1
Q ss_pred ccchHHHHHHHhhhcCCC-ceEEEEccccccCCCCCC--ccEEEEcCCCC
Q 006272 392 DIQQSQREVTLAGFRSGK-FMTLVATNVAARGLDIND--VQLIIQCEPPR 438 (652)
Q Consensus 392 ~~~~~~R~~~~~~f~~g~-~~vLvaT~~~~~Gldi~~--v~~VI~~~~p~ 438 (652)
+....+...+++.|+... ..||++|.-+..|||+|+ ++.||...+|.
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344445677888887654 379999988999999997 56888888773
No 292
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.74 E-value=0.089 Score=58.26 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=25.8
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
....+++||||+|.|... ....++..+..++..-+++|.+|-+.
T Consensus 117 ~~~~kViIIDE~~~Lt~~----a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTG----AFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred cCCeEEEEEECcccCCHH----HHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 456889999999988643 34445555544333334444455443
No 293
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.73 E-value=0.16 Score=49.37 Aligned_cols=44 Identities=9% Similarity=0.119 Sum_probs=25.8
Q ss_pred CceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 261 ~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
+.++|||||+|.+... -...+..++..+... ...+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~-~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAH-GQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHc-CCcEEEEeCCCCH
Confidence 4678999999987432 234444555444331 2235677777554
No 294
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.71 E-value=0.26 Score=53.10 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=59.9
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcc
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~ 226 (652)
..+++.|++|+|||... ..+.+.+.... .+.+++++.+ .++...+...+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~----------~~~~v~yv~~-~~f~~~~~~~l~~~~--------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF----------SDLKVSYMSG-DEFARKAVDILQKTH--------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC----------CCCeEEEEEH-HHHHHHHHHHHHHhh---------------
Confidence 45899999999999532 33444443211 1224666555 566666555443200
Q ss_pred hHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhc-CcHHHHHHHHHhccCCCCceEEEEcccCC
Q 006272 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLP 305 (652)
Q Consensus 227 ~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~-gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 305 (652)
+.+..+.. .+.++++|||||+|.+... ...+.+..++..+... ..|+|+.|-..|
T Consensus 195 -------------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~-~k~iIltsd~~P 250 (450)
T PRK14087 195 -------------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN-DKQLFFSSDKSP 250 (450)
T ss_pred -------------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CCcEEEECCCCH
Confidence 11111111 1456789999999977532 2345566666665543 335555544444
Q ss_pred hHH
Q 006272 306 SWV 308 (652)
Q Consensus 306 ~~~ 308 (652)
...
T Consensus 251 ~~l 253 (450)
T PRK14087 251 ELL 253 (450)
T ss_pred HHH
Confidence 333
No 295
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.69 E-value=0.42 Score=44.19 Aligned_cols=105 Identities=19% Similarity=0.098 Sum_probs=60.2
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcc
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~ 226 (652)
+=.++.+|..||||...+.-+-.....+ -++++..|-.. .. .+...+.-.-|.
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g-------------~~v~vfkp~iD----------~R---~~~~~V~Sr~G~- 57 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAG-------------MKVLVFKPAID----------TR---YGVGKVSSRIGL- 57 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcC-------------CeEEEEecccc----------cc---cccceeeeccCC-
Confidence 3457899999999986554444333332 24888888421 00 011111111111
Q ss_pred hHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhc
Q 006272 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (652)
Q Consensus 227 ~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~ 289 (652)
...-++|-.+..+.+++.....+.. +++|.||||+-+ +......+..+...+
T Consensus 58 ---------~~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~-~~~~v~~l~~lad~l 109 (201)
T COG1435 58 ---------SSEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF-DEELVYVLNELADRL 109 (201)
T ss_pred ---------cccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC-CHHHHHHHHHHHhhc
Confidence 1145777788888888876544333 889999999955 333344444454443
No 296
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.63 E-value=0.22 Score=51.66 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.3
Q ss_pred cEEEEccCCCCchhhhHH
Q 006272 148 DLVGRARTGQGKTLAFVL 165 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~l 165 (652)
.+++.+|+|+|||.....
T Consensus 38 ~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 699999999999986443
No 297
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.63 E-value=0.74 Score=50.19 Aligned_cols=134 Identities=22% Similarity=0.195 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHhc-------CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHH
Q 006272 133 FPIQAMTFDMVLD-------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (652)
Q Consensus 133 ~~~Q~~~i~~~l~-------~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~ 205 (652)
|--|..|+-.+.. .--+-+.|.-|-||+.|..+.|...+..+-. .+.|.+|+-+=..-+++
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~Gys------------nIyvtSPspeNlkTlFe 322 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGYS------------NIYVTSPSPENLKTLFE 322 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCcc------------eEEEcCCChHHHHHHHH
Confidence 5568877755442 1346789999999999999999888876532 37888998876555554
Q ss_pred HHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHH-----------------hCCcCCCCceEEecC
Q 006272 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE-----------------RGNIDLSSLKFRVLD 268 (652)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~-----------------~~~~~l~~~~~lViD 268 (652)
.+-+=....++.-. -.++||-.|-.-+...+. .+...+....+||||
T Consensus 323 Fv~kGfDaL~Yqeh----------------~Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~D~~kl~q~eLlVID 386 (1011)
T KOG2036|consen 323 FVFKGFDALEYQEH----------------VDYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPHDHQKLGQAELLVID 386 (1011)
T ss_pred HHHcchhhhcchhh----------------cchhhhhhcChhhhhhEEEEEEeccccceeEeeccchhhhccCCcEEEec
Confidence 43221111111100 012222222222221111 122346778999999
Q ss_pred cchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCC
Q 006272 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (652)
Q Consensus 269 Eah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 305 (652)
||-.+- .+.+..++ .+.+++|+.|+.
T Consensus 387 EAAAIP----Lplvk~Li-------gPylVfmaSTin 412 (1011)
T KOG2036|consen 387 EAAAIP----LPLVKKLI-------GPYLVFMASTIN 412 (1011)
T ss_pred hhhcCC----HHHHHHhh-------cceeEEEeeccc
Confidence 999774 45555554 357899999974
No 298
>PRK09183 transposase/IS protein; Provisional
Probab=94.62 E-value=0.24 Score=49.18 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=18.6
Q ss_pred HhcCCcEEEEccCCCCchhhhHH
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVL 165 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~l 165 (652)
+..+.++++.+|+|+|||.....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHH
Confidence 44688999999999999975443
No 299
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.58 E-value=0.13 Score=52.79 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=24.0
Q ss_pred CceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 261 ~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
..++|||||+|.+........+..++...+. ..+++ ++++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~--~~~~I-lt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSK--NCSFI-ITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCC--CceEE-EEcC
Confidence 4679999999988333334555555555443 44444 4444
No 300
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.56 E-value=0.42 Score=53.35 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=25.7
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
....+++||||+|.|.. .....++..+..++..-+++|.+|
T Consensus 125 ~~~~KVvIIdEad~Lt~----~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 125 KGRYRVYIIDEVHMLST----AAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred cCCCEEEEEeChhhcCH----HHHHHHHHHHhCCCCCeEEEEEeC
Confidence 46678999999999863 334556666655433334444444
No 301
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.55 E-value=0.18 Score=53.08 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=27.3
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHH
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWV 308 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~ 308 (652)
....+++||||+|+|.... .. .+++.+..++..-++++.||-+..+
T Consensus 115 ~~~~kViiIDead~m~~~a-an---aLLk~LEep~~~~~fIL~a~~~~~l 160 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-AN---ALLKAVEEPPPRTVWLLCAPSPEDV 160 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HH---HHHHHhhcCCCCCeEEEEECChHHC
Confidence 3567899999999995332 23 3444444433445566666654433
No 302
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.55 E-value=0.27 Score=50.19 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHHh----cC---CcEEEEccCCCCchhhhHHHH
Q 006272 132 LFPIQAMTFDMVL----DG---SDLVGRARTGQGKTLAFVLPI 167 (652)
Q Consensus 132 ~~~~Q~~~i~~~l----~~---~dvl~~a~TGsGKTl~~~lpi 167 (652)
++|||...+..+. .+ +-.++.||.|.||+..+...+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A 45 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA 45 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH
Confidence 3577777666554 44 357899999999997654433
No 303
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.53 E-value=0.12 Score=47.11 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=24.1
Q ss_pred CCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 260 ~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
...+++|||+||.|... ....+.+++..-+. +. +++|.++-+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~--~~-~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPE--NT-YFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTT--TE-EEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCC--CE-EEEEEECChH
Confidence 56899999999998632 24444444444433 34 4444445333
No 304
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.50 E-value=0.4 Score=46.61 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=34.0
Q ss_pred HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 211 (652)
+..+.-+++.+++|+|||+..+..+...+.++ .++++++. -+-..+..+.+..++
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-------------~~~~yi~~-e~~~~~~~~~~~~~g 75 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNG-------------YSVSYVST-QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-------------CcEEEEeC-CCCHHHHHHHHHHhC
Confidence 34577899999999999986444444433332 13677774 344455555555443
No 305
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.48 E-value=0.13 Score=56.67 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=16.0
Q ss_pred cEEEEccCCCCchhhhHHHH
Q 006272 148 DLVGRARTGQGKTLAFVLPI 167 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpi 167 (652)
-+|++++.|+|||....+.+
T Consensus 40 A~LFtGP~GvGKTTLAriLA 59 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILA 59 (700)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46999999999998765543
No 306
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.48 E-value=0.17 Score=53.91 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.5
Q ss_pred CcEEEEccCCCCchhhhH
Q 006272 147 SDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~ 164 (652)
.++++.||+|+|||.+.-
T Consensus 56 ~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999998643
No 307
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.43 E-value=0.11 Score=46.19 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=32.7
Q ss_pred HHHHHHhhhcCCCc---eEEEEccc--cccCCCCCC--ccEEEEcCCCC
Q 006272 397 QREVTLAGFRSGKF---MTLVATNV--AARGLDIND--VQLIIQCEPPR 438 (652)
Q Consensus 397 ~R~~~~~~f~~g~~---~vLvaT~~--~~~Gldi~~--v~~VI~~~~p~ 438 (652)
+...+++.|+.... .||+++.- ++.|||+|+ ++.||...+|.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 44677888876543 68998877 999999997 57899888773
No 308
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.42 E-value=0.4 Score=48.83 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=25.5
Q ss_pred CChHHHHHHHHHHh----cCC---cEEEEccCCCCchhhhHHH
Q 006272 131 SLFPIQAMTFDMVL----DGS---DLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l----~~~---dvl~~a~TGsGKTl~~~lp 166 (652)
.++|||...+..+. .++ -+++.+|.|.||+..+...
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~ 45 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELF 45 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHH
Confidence 35677777776554 343 5899999999999754433
No 309
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.41 E-value=0.33 Score=53.34 Aligned_cols=134 Identities=17% Similarity=0.196 Sum_probs=83.7
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCC--CceEEEEeCC
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV--GLTSCCLYGG 224 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~--~~~~~~~~gg 224 (652)
+-.++..|==.|||.... +++..+... ..+.++++++|.+..+..+++++..+.... +-.+..+.|
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s----------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG- 322 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT----------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG- 322 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh----------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-
Confidence 567889999999998655 666544422 123469999999999999999998765421 111222222
Q ss_pred cchHHHHHHhcCC--CcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcc
Q 006272 225 APYHAQEFKLKKG--IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (652)
Q Consensus 225 ~~~~~~~~~~~~~--~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SA 302 (652)
..+ .....++ ..|.++|. -..+...=.++++||||||+.+-+ +.+..++-.+... +.++|++|.
T Consensus 323 e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~-n~k~I~ISS 388 (738)
T PHA03368 323 ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQT-NCKIIFVSS 388 (738)
T ss_pred cEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhcc-CccEEEEec
Confidence 111 0011112 24555531 112233445789999999998863 5666677666554 689999998
Q ss_pred cCCh
Q 006272 303 TLPS 306 (652)
Q Consensus 303 T~~~ 306 (652)
|-+.
T Consensus 389 ~Ns~ 392 (738)
T PHA03368 389 TNTG 392 (738)
T ss_pred CCCC
Confidence 8654
No 310
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.41 E-value=0.39 Score=41.76 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.4
Q ss_pred EEEEccCCCCchhhhH
Q 006272 149 LVGRARTGQGKTLAFV 164 (652)
Q Consensus 149 vl~~a~TGsGKTl~~~ 164 (652)
+++.+|+|+|||...-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 6899999999998543
No 311
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.38 E-value=0.13 Score=49.93 Aligned_cols=130 Identities=17% Similarity=0.176 Sum_probs=68.8
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhC-CCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCC-------Cc
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-------GL 216 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~-~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~-------~~ 216 (652)
.|..+++.+++|||||+..+-.+.+.+.+ +. .+++++- .+-..++.+.++.++... .+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge-------------~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l 83 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE-------------KVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKL 83 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT---------------EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC-------------cEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCE
Confidence 45789999999999998766666666665 43 2777773 455667777776654211 01
Q ss_pred eEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhc----CcHHHHHHHHHhccCC
Q 006272 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM----GFVEDVELILGKVEDA 292 (652)
Q Consensus 217 ~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~----gf~~~~~~i~~~~~~~ 292 (652)
.+.......... . -..+..+...+... +.-.+.+.+|||-...+... .++..+..+...+..
T Consensus 84 ~~~d~~~~~~~~----------~--~~~~~~l~~~i~~~-i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~- 149 (226)
T PF06745_consen 84 KIIDAFPERIGW----------S--PNDLEELLSKIREA-IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKS- 149 (226)
T ss_dssp EEEESSGGGST-----------T--SCCHHHHHHHHHHH-HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHH-
T ss_pred EEEecccccccc----------c--ccCHHHHHHHHHHH-HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHH-
Confidence 111111000000 0 12233344333221 11112378999999988221 255566667766655
Q ss_pred CCceEEEEccc
Q 006272 293 NKVQTLLFSAT 303 (652)
Q Consensus 293 ~~~q~l~~SAT 303 (652)
.-.+++++++
T Consensus 150 -~~~t~llt~~ 159 (226)
T PF06745_consen 150 -RGVTTLLTSE 159 (226)
T ss_dssp -TTEEEEEEEE
T ss_pred -CCCEEEEEEc
Confidence 2345566555
No 312
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.37 E-value=0.38 Score=51.68 Aligned_cols=50 Identities=10% Similarity=0.197 Sum_probs=28.4
Q ss_pred CceEEecCcchhhhhcC-cHHHHHHHHHhccCCCCceEEEEcccCChHHHHH
Q 006272 261 SLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWVKHI 311 (652)
Q Consensus 261 ~~~~lViDEah~~l~~g-f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~ 311 (652)
++++|+|||+|.+++.. ....+..++..+... ..++++.|-..|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~-~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS-GKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc-CCeEEEECCCCHHHHHHH
Confidence 56799999999886432 234455555555442 335555444445444443
No 313
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.36 E-value=0.62 Score=51.49 Aligned_cols=150 Identities=10% Similarity=0.031 Sum_probs=84.1
Q ss_pred CChHHHHHHHHHHh---cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVL---DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l---~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 207 (652)
-|.|.=.+-|..++ ..+-.++.+|=|.|||.+..+.+...+... +.+++|++|...-+.++.+.+
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~------------Gi~IlvTAH~~~ts~evF~rv 236 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFL------------EIDIVVQAQRKTMCLTLYNRV 236 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhc------------CCeEEEECCChhhHHHHHHHH
Confidence 34555555555444 556788999999999987765555433311 235999999999999988888
Q ss_pred HHHhcCCC--------ceEEEEeCCcc-hHHHH-HHhc-CCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhc
Q 006272 208 DVYGGAVG--------LTSCCLYGGAP-YHAQE-FKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276 (652)
Q Consensus 208 ~~~~~~~~--------~~~~~~~gg~~-~~~~~-~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~ 276 (652)
..+....+ -.+..+.|+.. ..-.. ...+ ....|.+++-. .+...-..+++||+|||..+-.
T Consensus 237 ~~~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~- 308 (752)
T PHA03333 237 ETVVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP- 308 (752)
T ss_pred HHHHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH-
Confidence 77664222 01111222210 00000 0000 00223332211 1223334568999999997753
Q ss_pred CcHHHHHHHHHhccCCCCceEEEEcccC
Q 006272 277 GFVEDVELILGKVEDANKVQTLLFSATL 304 (652)
Q Consensus 277 gf~~~~~~i~~~~~~~~~~q~l~~SAT~ 304 (652)
+.+..|+-.+... ..+++++|.+-
T Consensus 309 ---~~l~aIlP~l~~~-~~k~IiISS~~ 332 (752)
T PHA03333 309 ---GALLSVLPLMAVK-GTKQIHISSPV 332 (752)
T ss_pred ---HHHHHHHHHHccC-CCceEEEeCCC
Confidence 5566666666543 45666677765
No 314
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.31 E-value=0.3 Score=50.04 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHhc--C---CcEEEEccCCCCchhhhHHH
Q 006272 132 LFPIQAMTFDMVLD--G---SDLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 132 ~~~~Q~~~i~~~l~--~---~dvl~~a~TGsGKTl~~~lp 166 (652)
++|||...+..+.. + +-+++.+|.|.|||..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 36888888877763 2 24899999999999865543
No 315
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.31 E-value=0.33 Score=48.87 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
+.++++.+|+|||||+++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4589999999999998653
No 316
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.27 E-value=0.1 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCCchhhhHHHHH
Q 006272 146 GSDLVGRARTGQGKTLAFVLPIL 168 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil 168 (652)
++.+++++|||+|||++....+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999986554433
No 317
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.23 E-value=0.55 Score=52.56 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=24.8
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
+...++|||||+|.|.. ..+..++..+..+...-+++|.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~----~a~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLST----AAFNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCH----HHHHHHHHHHhcCCCCeEEEEEeC
Confidence 45678999999998863 334445555544333344445444
No 318
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.21 E-value=0.35 Score=51.61 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=25.0
Q ss_pred CceEEecCcchhhhhcC-cHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 261 SLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 261 ~~~~lViDEah~~l~~g-f~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
++++|||||+|.+.... ....+..++..+... ..++ ++|++.++
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~-~~~i-iits~~~p 243 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN-GKQI-VLTSDRPP 243 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC-CCCE-EEecCCCH
Confidence 46799999999875432 233444555544332 3455 45555544
No 319
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=94.14 E-value=0.33 Score=50.13 Aligned_cols=68 Identities=7% Similarity=0.016 Sum_probs=41.1
Q ss_pred EEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC------CceeeecCh-hhHHHHHhhccC----C--Cce
Q 006272 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPV-ADLDLFRSGADN----A--ANV 583 (652)
Q Consensus 517 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~------~~a~~dv~~-~~a~~~~~~~~~----~--~~i 583 (652)
.+|+|..-....+.+++..++.+ ++ .|..+.+..|. .++||++.. +.|+.++..++. + ..+
T Consensus 194 ~~lfV~nLp~~vtee~L~~~F~~-fG-----~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l 267 (346)
T TIGR01659 194 TNLYVTNLPRTITDDQLDTIFGK-YG-----QIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPL 267 (346)
T ss_pred ceeEEeCCCCcccHHHHHHHHHh-cC-----CEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeE
Confidence 46777665555566666655544 23 33344444332 589999988 888888887762 2 345
Q ss_pred eeeeccC
Q 006272 584 SLEVLKQ 590 (652)
Q Consensus 584 ~l~~~~~ 590 (652)
.+..++.
T Consensus 268 ~V~~a~~ 274 (346)
T TIGR01659 268 TVRLAEE 274 (346)
T ss_pred EEEECCc
Confidence 5555543
No 320
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.13 E-value=0.38 Score=52.99 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=16.2
Q ss_pred CcEEEEccCCCCchhhhHHH
Q 006272 147 SDLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lp 166 (652)
+-+|+.||.|+|||..+.+.
T Consensus 39 hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45899999999999865544
No 321
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.10 E-value=0.17 Score=50.66 Aligned_cols=34 Identities=12% Similarity=-0.004 Sum_probs=24.1
Q ss_pred CChHHHHHHHHHHh----cCC-cEEEEccCCCCchhhhH
Q 006272 131 SLFPIQAMTFDMVL----DGS-DLVGRARTGQGKTLAFV 164 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l----~~~-dvl~~a~TGsGKTl~~~ 164 (652)
.+++.+.+++..+. .+. .+++.||+|+|||+...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 45666667776553 223 58899999999998544
No 322
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=94.10 E-value=0.57 Score=51.55 Aligned_cols=71 Identities=10% Similarity=0.011 Sum_probs=46.5
Q ss_pred cEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeeccC
Q 006272 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVLKQ 590 (652)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~~~ 590 (652)
..+|+|..-....+.+++..++... ....|.++.+.. .++||++.+ +.|..++..++ .++.+.++.++.
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f----~~G~I~rV~~~r--gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEF----KPGKVERVKKIR--DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhc----CCCceEEEEeec--CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 3467777655455666666666552 112455555555 589999988 78888887776 677788887765
Q ss_pred CC
Q 006272 591 LP 592 (652)
Q Consensus 591 lp 592 (652)
.+
T Consensus 307 ~~ 308 (578)
T TIGR01648 307 VD 308 (578)
T ss_pred CC
Confidence 43
No 323
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.09 E-value=0.11 Score=48.92 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=21.3
Q ss_pred CCceEEecCcchhhhhcCcHHHHHHHHHhccC
Q 006272 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVED 291 (652)
Q Consensus 260 ~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~ 291 (652)
-.-+.||+||||.|. .|-...+...+....+
T Consensus 112 grhKIiILDEADSMT-~gAQQAlRRtMEiyS~ 142 (333)
T KOG0991|consen 112 GRHKIIILDEADSMT-AGAQQALRRTMEIYSN 142 (333)
T ss_pred CceeEEEeeccchhh-hHHHHHHHHHHHHHcc
Confidence 456789999999985 4445566666655544
No 324
>PRK04195 replication factor C large subunit; Provisional
Probab=94.08 E-value=0.37 Score=52.66 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=28.7
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhc---CCcEEEEccCCCCchhhhH
Q 006272 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD---GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~---~~dvl~~a~TGsGKTl~~~ 164 (652)
..|..++++-..+.....|... +..... .+.+++.||+|+|||....
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~------------l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREW------------IESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHH------------HHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 3455566666666555544332 111112 4679999999999997543
No 325
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.07 E-value=0.33 Score=54.20 Aligned_cols=19 Identities=26% Similarity=0.149 Sum_probs=15.6
Q ss_pred EEEEccCCCCchhhhHHHH
Q 006272 149 LVGRARTGQGKTLAFVLPI 167 (652)
Q Consensus 149 vl~~a~TGsGKTl~~~lpi 167 (652)
+|+.||.|+|||.+..+.+
T Consensus 41 yLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998765543
No 326
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.07 E-value=0.12 Score=56.48 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=15.6
Q ss_pred cEEEEccCCCCchhhhHHH
Q 006272 148 DLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lp 166 (652)
-+|+.||.|+|||.++.+.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~l 58 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRIL 58 (509)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4699999999999866543
No 327
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.97 E-value=0.17 Score=52.98 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=14.9
Q ss_pred cEEEEccCCCCchhhhHH
Q 006272 148 DLVGRARTGQGKTLAFVL 165 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~l 165 (652)
-+++.||.|+|||..+..
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 369999999999986554
No 328
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.97 E-value=0.22 Score=50.49 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=42.7
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHh-cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHH
Q 006272 121 REKLKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (652)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~~l-~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 199 (652)
++.|.+.|. +++-|.+.+..+. .+++++++++||||||.. +-.++..+.... ..-+++++-.+.||
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~----------~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND----------PTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC----------CCceEEEECCchhh
Confidence 445555554 4556666665544 668999999999999974 334444443211 11257888888887
Q ss_pred H
Q 006272 200 A 200 (652)
Q Consensus 200 a 200 (652)
.
T Consensus 175 ~ 175 (299)
T TIGR02782 175 Q 175 (299)
T ss_pred c
Confidence 4
No 329
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.94 E-value=0.37 Score=51.54 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=23.6
Q ss_pred CceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCC
Q 006272 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (652)
Q Consensus 261 ~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 305 (652)
.-.+|+|||+|++.. .....++..+.. ..++++.+|-.
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le~---~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVED---GTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhhc---CcEEEEEeCCC
Confidence 456899999998852 334445555543 34666666643
No 330
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.93 E-value=0.25 Score=56.41 Aligned_cols=18 Identities=28% Similarity=0.122 Sum_probs=15.0
Q ss_pred EEEEccCCCCchhhhHHH
Q 006272 149 LVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 149 vl~~a~TGsGKTl~~~lp 166 (652)
+|++||.|+|||.+..+.
T Consensus 41 yLFtGPpGtGKTTLARiL 58 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLF 58 (944)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 589999999999866543
No 331
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.91 E-value=0.16 Score=56.15 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=16.0
Q ss_pred cEEEEccCCCCchhhhHHHH
Q 006272 148 DLVGRARTGQGKTLAFVLPI 167 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpi 167 (652)
-+|++||.|+|||.++.+.+
T Consensus 39 AyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46999999999998765443
No 332
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.86 E-value=2.3 Score=44.83 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=48.0
Q ss_pred CCeE-EEEecchhHHHHHHHhcC--------CCcccccccchHHHHHHHhhhcCCCceEEEEcc------ccccCCCCCC
Q 006272 363 GGRT-IIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN------VAARGLDIND 427 (652)
Q Consensus 363 ~~~~-iVF~~s~~~~~~l~~~l~--------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gldi~~ 427 (652)
.+++ +|.|+|++.|.++....+ .+.++||+.+.-++..-|+ -..-++|||. +--.++|+..
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhccccee
Confidence 3454 667899998877765433 5678899999888776665 3467899996 2234688888
Q ss_pred ccEEEE
Q 006272 428 VQLIIQ 433 (652)
Q Consensus 428 v~~VI~ 433 (652)
|++.|.
T Consensus 371 vS~LV~ 376 (731)
T KOG0339|consen 371 VSYLVL 376 (731)
T ss_pred eeEEEE
Confidence 888664
No 333
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.82 E-value=0.4 Score=51.46 Aligned_cols=147 Identities=12% Similarity=0.025 Sum_probs=85.2
Q ss_pred CChHHHHHHHHHHhc------C----CcEEEEccCCCCchhhhH-HHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHH
Q 006272 131 SLFPIQAMTFDMVLD------G----SDLVGRARTGQGKTLAFV-LPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~------~----~dvl~~a~TGsGKTl~~~-lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 199 (652)
.+-|+|.=++-.++- + +..++..|-+-|||.... |.+...+.... .+-...|++|+.+-
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~----------~~~~~~i~A~s~~q 130 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR----------SGAGIYILAPSVEQ 130 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh----------cCCcEEEEeccHHH
Confidence 577999999988871 1 357899999999997544 33333333321 12358999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcH---HHHHHHH--hCCcCCCCceEEecCcchhhh
Q 006272 200 AKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG---RIKDHIE--RGNIDLSSLKFRVLDEADEML 274 (652)
Q Consensus 200 a~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~---rl~~~l~--~~~~~l~~~~~lViDEah~~l 274 (652)
+.+.+..++....... +.. .......+....+.. ..+..+. .+..+-.+..+.|+||.|...
T Consensus 131 a~~~F~~ar~mv~~~~----------~l~---~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~ 197 (546)
T COG4626 131 AANSFNPARDMVKRDD----------DLR---DLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFG 197 (546)
T ss_pred HHHhhHHHHHHHHhCc----------chh---hhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhc
Confidence 9999888876553322 000 011111222222222 2222222 234455567899999999876
Q ss_pred hcCcHHHHHHHHHhccCCCCceEEEEcc
Q 006272 275 RMGFVEDVELILGKVEDANKVQTLLFSA 302 (652)
Q Consensus 275 ~~gf~~~~~~i~~~~~~~~~~q~l~~SA 302 (652)
+.+ ..+..+..-+...++.+++..|-
T Consensus 198 ~~~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 198 KQE--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred CHH--HHHHHHHhhhccCcCceEEEEec
Confidence 543 45555555554444556665543
No 334
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.79 E-value=0.82 Score=47.02 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=27.3
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
....++|||||||.|.. +....++..+..++....++|++.-+.
T Consensus 107 ~~~~kviiidead~mt~----~A~nallk~lEep~~~~~~il~~n~~~ 150 (325)
T COG0470 107 EGGYKVVIIDEADKLTE----DAANALLKTLEEPPKNTRFILITNDPS 150 (325)
T ss_pred CCCceEEEeCcHHHHhH----HHHHHHHHHhccCCCCeEEEEEcCChh
Confidence 36789999999999963 334444444444434455666665443
No 335
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.78 E-value=0.33 Score=53.69 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=15.7
Q ss_pred EEEEccCCCCchhhhHHHH
Q 006272 149 LVGRARTGQGKTLAFVLPI 167 (652)
Q Consensus 149 vl~~a~TGsGKTl~~~lpi 167 (652)
+|+++|.|+|||.++.+.+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998766543
No 336
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=93.78 E-value=0.15 Score=58.22 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=66.2
Q ss_pred HHHHHHhhCCCCeEEEEecchhHHHHHHHhcC--------CCcccccccchHHHHHHHhhhcCCCceEEEEcc-ccccCC
Q 006272 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-VAARGL 423 (652)
Q Consensus 353 l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~--------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~-~~~~Gl 423 (652)
+..++.....+.+++|.++|+.-|.+.+..+. .+..+||+++..+|..++..+.+|...|+|+|. .+...+
T Consensus 300 ~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v 379 (681)
T PRK10917 300 ALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV 379 (681)
T ss_pred HHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc
Confidence 33444444567799999999999988877664 467899999999999999999999999999996 445567
Q ss_pred CCCCccEEEE
Q 006272 424 DINDVQLIIQ 433 (652)
Q Consensus 424 di~~v~~VI~ 433 (652)
.+.++.+||.
T Consensus 380 ~~~~l~lvVI 389 (681)
T PRK10917 380 EFHNLGLVII 389 (681)
T ss_pred hhcccceEEE
Confidence 8889998885
No 337
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.75 E-value=0.68 Score=43.41 Aligned_cols=41 Identities=12% Similarity=0.256 Sum_probs=24.8
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
....++|||||+|.|.. .....++..+..++..-+++|.++
T Consensus 94 ~~~~kviiide~~~l~~----~~~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE----AAANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCH----HHHHHHHHHhcCCCCCeEEEEEEC
Confidence 45678999999999863 334445555544333334445444
No 338
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.69 E-value=0.14 Score=51.57 Aligned_cols=61 Identities=20% Similarity=0.164 Sum_probs=43.3
Q ss_pred CCCCChHHHHHHHHHHhcCC-cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHH
Q 006272 128 GIESLFPIQAMTFDMVLDGS-DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (652)
Q Consensus 128 g~~~~~~~Q~~~i~~~l~~~-dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q 202 (652)
.|..+++-|...+..+...+ ++|+++.||||||+. + +.+...-. ..-|+|++--|.||-.+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--L---Nal~~~i~---------~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--L---NALSGFID---------SDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--H---HHHHhcCC---------CcccEEEEeehhhhccC
Confidence 56678999999998887665 999999999999973 2 22222111 11168999998888544
No 339
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.68 E-value=0.5 Score=49.01 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=24.7
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCC
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 305 (652)
....+++||||||.|.... .+.+.+++...+. +..++++| +-|
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~--~~~fiLit-~~~ 181 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPA--RALFILIS-HSS 181 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCC--CceEEEEE-CCh
Confidence 3567899999999985332 3444555544332 33444443 434
No 340
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.64 E-value=0.23 Score=54.66 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=29.5
Q ss_pred CCCceEEecCcchhhhhcC-cHHHHHHHHHhccCCCCceEEEEcccCChHH
Q 006272 259 LSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWV 308 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~g-f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~ 308 (652)
+.++++||||++|.+.... ....+-.++..+... ..++|+.|-..|..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~-gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA-NKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhc-CCCEEEecCCChHhh
Confidence 4457899999999875432 344555666665442 346665544444443
No 341
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.61 E-value=0.85 Score=48.28 Aligned_cols=54 Identities=6% Similarity=0.155 Sum_probs=29.4
Q ss_pred CceEEecCcchhhhh-cCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhc
Q 006272 261 SLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (652)
Q Consensus 261 ~~~~lViDEah~~l~-~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (652)
.+++||||=+-++-. ......+..+...... ..-++.++||........+..|.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p--~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQP--DNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCC--cEEEEEeccccChhHHHHHHHHH
Confidence 345666666644321 1123445555544432 34577789998766666666554
No 342
>PF13173 AAA_14: AAA domain
Probab=93.49 E-value=0.85 Score=39.68 Aligned_cols=37 Identities=11% Similarity=0.318 Sum_probs=24.1
Q ss_pred CceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcc
Q 006272 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (652)
Q Consensus 261 ~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SA 302 (652)
.-.+|+|||+|.+- .+...+..+....+ +.++++.+.
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~~---~~~ii~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNGP---NIKIILTGS 97 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhcc---CceEEEEcc
Confidence 45789999999884 35666666666542 355555433
No 343
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.44 E-value=0.82 Score=52.05 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=18.4
Q ss_pred CCceEEecCcchhhhhcCcHHHHHHHHHh
Q 006272 260 SSLKFRVLDEADEMLRMGFVEDVELILGK 288 (652)
Q Consensus 260 ~~~~~lViDEah~~l~~gf~~~~~~i~~~ 288 (652)
..+.+|||||+|.+.... ...+..++..
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHH
Confidence 346789999999987542 3444445544
No 344
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.42 E-value=0.33 Score=55.28 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=27.5
Q ss_pred CceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHH
Q 006272 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313 (652)
Q Consensus 261 ~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~ 313 (652)
+..+|||||+|++.. .....++..+. ..++++.+||-++....+..
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 456899999998752 22334444443 34677888876554433333
No 345
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.39 E-value=0.76 Score=48.88 Aligned_cols=22 Identities=18% Similarity=0.016 Sum_probs=17.0
Q ss_pred cEEEEccCCCCchhhhHHHHHH
Q 006272 148 DLVGRARTGQGKTLAFVLPILE 169 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpil~ 169 (652)
-+++++++|+|||++..-.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999876544443
No 346
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.36 E-value=0.29 Score=46.61 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=14.6
Q ss_pred cEEEEccCCCCchhhhH
Q 006272 148 DLVGRARTGQGKTLAFV 164 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~ 164 (652)
++|+.+|+|+|||..+.
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 69999999999997544
No 347
>PTZ00293 thymidine kinase; Provisional
Probab=93.32 E-value=0.53 Score=44.61 Aligned_cols=38 Identities=16% Similarity=0.021 Sum_probs=25.2
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEecc
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt 196 (652)
|+=.++.+|.+||||.-.+--+......+. .++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~-------------kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEK-------------KCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCC-------------ceEEEEec
Confidence 445688999999999755444443333322 37888885
No 348
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.28 E-value=0.26 Score=55.42 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=26.2
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
....+++||||||.|.. .....++..+..++..-+++|.+|-+.
T Consensus 116 ~g~~KV~IIDEa~~LT~----~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK----SAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred cCCCEEEEEEChhhCCH----HHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 35778999999998853 344455555544333334445555443
No 349
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.095 Score=53.88 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=19.5
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhC
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~ 173 (652)
...|+|+.+||||||||... -|.++.+
T Consensus 225 eKSNvLllGPtGsGKTllaq--TLAr~ld 251 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQ--TLARVLD 251 (564)
T ss_pred ecccEEEECCCCCchhHHHH--HHHHHhC
Confidence 44689999999999998543 3444444
No 350
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.20 E-value=0.93 Score=44.01 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=32.6
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 211 (652)
.|..+++.+++|+|||...+..+.+.+..+. .+++++- .+.+.++.+.+..++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~-------------~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGD-------------PVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCC-------------eEEEEEc-cCCHHHHHHHHHHhC
Confidence 4678999999999999765544444443321 3666653 344555555554443
No 351
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=93.20 E-value=0.2 Score=44.83 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=19.9
Q ss_pred hccccEE-eecCCCceeeecChhhHHHHHhhccCCCceeeeeccCCC
Q 006272 547 ELVKGMA-LTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLP 592 (652)
Q Consensus 547 ~~I~~i~-~~~d~~~a~~dv~~~~a~~~~~~~~~~~~i~l~~~~~lp 592 (652)
.+|++|+ |+.....++|.|...+..++ ..+..+..+.++..+-||
T Consensus 89 ~qIGKVDEIfG~i~d~~fsIK~~dgv~a-ssfk~g~k~fi~p~KllP 134 (215)
T KOG3262|consen 89 EQIGKVDEIFGPINDVHFSIKPSDGVQA-SSFKPGDKLFIDPDKLLP 134 (215)
T ss_pred hhhcchhhhcccccccEEEEecCCCcee-ecccCCCeEEecccccCc
Confidence 3455554 23333446666654332111 122344455555555444
No 352
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.15 E-value=0.72 Score=45.19 Aligned_cols=30 Identities=20% Similarity=0.070 Sum_probs=21.5
Q ss_pred hcCCcEEEEccCCCCchhhhHHHHHHHHhC
Q 006272 144 LDGSDLVGRARTGQGKTLAFVLPILESLTN 173 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~~~lpil~~l~~ 173 (652)
..|.-+++.|++|+|||...+-.+++.+..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~ 40 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK 40 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 356778999999999997555445554443
No 353
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.10 E-value=0.57 Score=52.19 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.1
Q ss_pred cEEEEccCCCCchhhhHH
Q 006272 148 DLVGRARTGQGKTLAFVL 165 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~l 165 (652)
-+|+.||.|+|||.+..+
T Consensus 40 ayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 40 AFLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999987655
No 354
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.05 E-value=0.23 Score=55.39 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=16.7
Q ss_pred CcEEEEccCCCCchhhhHHHH
Q 006272 147 SDLVGRARTGQGKTLAFVLPI 167 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpi 167 (652)
+.+|+++|.|+|||.+..+.+
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 358999999999998765543
No 355
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.04 E-value=0.79 Score=47.85 Aligned_cols=24 Identities=17% Similarity=-0.017 Sum_probs=17.2
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHh
Q 006272 148 DLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
-+|+.+|.|+||+..+... ...++
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~-A~~Ll 66 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRM-ARFLL 66 (365)
T ss_pred eEEEECCCCCCHHHHHHHH-HHHHh
Confidence 4899999999999764433 33443
No 356
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.01 E-value=0.42 Score=50.19 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCchhhh
Q 006272 147 SDLVGRARTGQGKTLAF 163 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~ 163 (652)
.++++.||+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999754
No 357
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=93.01 E-value=0.012 Score=64.86 Aligned_cols=74 Identities=23% Similarity=0.421 Sum_probs=55.8
Q ss_pred hhhhHHHHHHh-hCCCCeEEEEecchhHHHHHHHhcC---CCcccccccchHHHHHHHhhhcC---CCceEEEEcccccc
Q 006272 349 RSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRS---GKFMTLVATNVAAR 421 (652)
Q Consensus 349 ~~~~l~~ll~~-~~~~~~~iVF~~s~~~~~~l~~~l~---~~~~lh~~~~~~~R~~~~~~f~~---g~~~vLvaT~~~~~ 421 (652)
++.+|...+.. ...+.+++||..-+...+-|..++. ....+.|..+-..|..+++.|.. ..+..|++|.+.+.
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~ 695 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGL 695 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeecccccC
Confidence 33444444433 3467799999999999888888886 45578899999999999999973 46778999987665
Q ss_pred C
Q 006272 422 G 422 (652)
Q Consensus 422 G 422 (652)
|
T Consensus 696 g 696 (696)
T KOG0383|consen 696 G 696 (696)
T ss_pred C
Confidence 4
No 358
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.99 E-value=1.7 Score=40.52 Aligned_cols=147 Identities=17% Similarity=0.137 Sum_probs=73.3
Q ss_pred hcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeC
Q 006272 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~g 223 (652)
+....+++..++|.|||.+++--++..+..+. +++|+.=.+--. -+.+...+....++.... .
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~-------------~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~--~ 82 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGK-------------KVGVVQFIKGAW--STGERNLLEFGGGVEFHV--M 82 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCC-------------eEEEEEEecCCC--ccCHHHHHhcCCCcEEEE--C
Confidence 35678999999999999988777776665543 466665333210 011222222111222222 1
Q ss_pred CcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCc--HHHHHHHHHhccCCCCceEEEEc
Q 006272 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF--VEDVELILGKVEDANKVQTLLFS 301 (652)
Q Consensus 224 g~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf--~~~~~~i~~~~~~~~~~q~l~~S 301 (652)
+..+... ....+.-+......+..... .+.-..+++|||||+=..++.++ .+++..++...|. ..-+|+.-
T Consensus 83 g~~~~~~----~~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~--~~evVlTG 155 (191)
T PRK05986 83 GTGFTWE----TQDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPG--MQHVVITG 155 (191)
T ss_pred CCCCccc----CCCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCC--CCEEEEEC
Confidence 1111000 00000000111112222211 22235678999999999999885 4455555555443 34445444
Q ss_pred ccCChHHHHHHHH
Q 006272 302 ATLPSWVKHISTK 314 (652)
Q Consensus 302 AT~~~~~~~~~~~ 314 (652)
-..|+++...+..
T Consensus 156 R~~p~~Lie~ADl 168 (191)
T PRK05986 156 RGAPRELIEAADL 168 (191)
T ss_pred CCCCHHHHHhCch
Confidence 4566666555443
No 359
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.96 E-value=2 Score=43.87 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=32.4
Q ss_pred CCceEEecCcchhhhh-cCcHHHHHHHHHhc----cCCCCceEEEEcccCChHHHHHHHHhc
Q 006272 260 SSLKFRVLDEADEMLR-MGFVEDVELILGKV----EDANKVQTLLFSATLPSWVKHISTKFL 316 (652)
Q Consensus 260 ~~~~~lViDEah~~l~-~gf~~~~~~i~~~~----~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (652)
.++++||||=+-++.. ......+..+...+ +..+.-.++.++||........+..|.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 5567888888776532 22334555554432 222234578899997665544455554
No 360
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.95 E-value=0.44 Score=49.12 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHh----cCC---cEEEEccCCCCchhhhHHH
Q 006272 132 LFPIQAMTFDMVL----DGS---DLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 132 ~~~~Q~~~i~~~l----~~~---dvl~~a~TGsGKTl~~~lp 166 (652)
++|||...+..+. +++ -.++.+|.|+||+..+...
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~ 44 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHH
Confidence 5677777776654 343 5889999999999765443
No 361
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.91 E-value=0.59 Score=47.52 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
++.+++.|++|+|||....
T Consensus 156 ~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 362
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.89 E-value=0.65 Score=47.41 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=32.4
Q ss_pred EEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEc
Q 006272 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301 (652)
Q Consensus 240 Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~S 301 (652)
|-|-....+.+.+....+ ....+++|||+||.|.. .....+++.+..+++..+|++|
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~----~aaNaLLK~LEEPp~~~fILi~ 160 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNE----AAANALLKTLEEPGNGTLILIA 160 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCH----HHHHHHHHHHhCCCCCeEEEEE
Confidence 434444445555555444 35789999999999853 3344455555444344444443
No 363
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.86 E-value=0.43 Score=53.46 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=16.2
Q ss_pred CcEEEEccCCCCchhhhHHH
Q 006272 147 SDLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lp 166 (652)
+.+|+.||.|+|||.++...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred ceEEEECCCCCChHHHHHHH
Confidence 45799999999999865543
No 364
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.84 E-value=1.7 Score=40.06 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=30.0
Q ss_pred CCceEEecCcchhhh-hcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhc
Q 006272 260 SSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (652)
Q Consensus 260 ~~~~~lViDEah~~l-~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (652)
.+.+++|+|....+. +......+..+...... ..-++.++|+.+......+..+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~--~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKP--DEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCC--CeEEEEEECCCChHHHHHHHHHH
Confidence 456788999988652 22233334333333222 34566677776665555555554
No 365
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.78 E-value=0.45 Score=52.51 Aligned_cols=153 Identities=16% Similarity=0.124 Sum_probs=91.7
Q ss_pred CCChHHHHHHHHHHhcCCc----------EEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHH
Q 006272 130 ESLFPIQAMTFDMVLDGSD----------LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~~~d----------vl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 199 (652)
..+...|.++|-.+.+-++ .|+-...|.||--+..-.|++..+++.+ ++|.++-+..|
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRK------------rAlW~SVSsDL 330 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRK------------RALWFSVSSDL 330 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccc------------eeEEEEecccc
Confidence 3566778888866554322 5555566666655444445666655543 58999998888
Q ss_pred HHHHHHHHHHHhcCCCceEEEEeCC----cchHHHHHHhcCCCcEEEeCcHHHHHHHH---------------hCCcCCC
Q 006272 200 AKQVHEDFDVYGGAVGLTSCCLYGG----APYHAQEFKLKKGIDVVIGTPGRIKDHIE---------------RGNIDLS 260 (652)
Q Consensus 200 a~q~~~~~~~~~~~~~~~~~~~~gg----~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~---------------~~~~~l~ 260 (652)
--...+.+..++. +++.|..+..- .+.. ..-.-.-.|+++|+-.|+-.-. .-.-++
T Consensus 331 KfDAERDL~DigA-~~I~V~alnK~KYakIss~---en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~f- 405 (1300)
T KOG1513|consen 331 KFDAERDLRDIGA-TGIAVHALNKFKYAKISSK---ENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDF- 405 (1300)
T ss_pred ccchhhchhhcCC-CCccceehhhccccccccc---ccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhcc-
Confidence 8777777777664 44555443211 1100 0001124599999877654332 111112
Q ss_pred CceEEecCcchhhhhcC---------cHHHHHHHHHhccCCCCceEEEEccc
Q 006272 261 SLKFRVLDEADEMLRMG---------FVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 261 ~~~~lViDEah~~l~~g---------f~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
=.+|||||||+.-+.. ....+..+-..+| +.+++.-|||
T Consensus 406 -eGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP---~ARVVYASAT 453 (1300)
T KOG1513|consen 406 -EGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP---NARVVYASAT 453 (1300)
T ss_pred -ceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC---CceEEEeecc
Confidence 2579999999865421 3456666667776 4689999999
No 366
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.76 E-value=0.39 Score=54.71 Aligned_cols=89 Identities=17% Similarity=0.254 Sum_probs=67.3
Q ss_pred chhhhhhHHHHH-HhhCCCCeEEEEecchhHHHHHHHhcC-----CCcccccccchHHHHHHHhhhcCCCceEEEEcccc
Q 006272 346 SSARSQVIPDII-RCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (652)
Q Consensus 346 ~~~~~~~l~~ll-~~~~~~~~~iVF~~s~~~~~~l~~~l~-----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~ 419 (652)
...|......++ .....+.++||.++++..+.++.+.|. .+..+||+++..+|...+.....|..+|+|+|..+
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 344544433333 333456799999999999988887775 57789999999999999999999999999999744
Q ss_pred ccCCCCCCccEEEEcC
Q 006272 420 ARGLDINDVQLIIQCE 435 (652)
Q Consensus 420 ~~Gldi~~v~~VI~~~ 435 (652)
.. +.+.++.+||.-+
T Consensus 252 l~-~p~~~l~liVvDE 266 (679)
T PRK05580 252 LF-LPFKNLGLIIVDE 266 (679)
T ss_pred hc-ccccCCCEEEEEC
Confidence 32 5677888887543
No 367
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.76 E-value=0.72 Score=49.62 Aligned_cols=89 Identities=20% Similarity=0.189 Sum_probs=52.7
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCC
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg 224 (652)
.|.-+++.+++|+|||+..+..+.+....+ .++++++- .+-..|+...+.+++.... -
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g-------------~~vlYvs~-Ees~~qi~~ra~rlg~~~~--~------ 136 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAG-------------GKVLYVSG-EESASQIKLRAERLGLPSD--N------ 136 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcC-------------CeEEEEEc-cccHHHHHHHHHHcCCChh--c------
Confidence 456789999999999985444443333221 24788774 4666777777666542111 0
Q ss_pred cchHHHHHHhcCCCcEEEeC---cHHHHHHHHhCCcCCCCceEEecCcchhhhh
Q 006272 225 APYHAQEFKLKKGIDVVIGT---PGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275 (652)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~T---p~rl~~~l~~~~~~l~~~~~lViDEah~~l~ 275 (652)
+.+.. ...+...+.. .+.++||||+++.+..
T Consensus 137 ---------------l~~~~e~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 137 ---------------LYLLAETNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred ---------------EEEeCCCCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 22222 2233333322 3578999999998754
No 368
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.75 E-value=0.036 Score=49.17 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.8
Q ss_pred cEEEEccCCCCchhhh
Q 006272 148 DLVGRARTGQGKTLAF 163 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~ 163 (652)
+|++.+|+|+|||...
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5899999999999743
No 369
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.74 E-value=1.9 Score=46.29 Aligned_cols=98 Identities=21% Similarity=0.295 Sum_probs=76.3
Q ss_pred cCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHH
Q 006272 154 RTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233 (652)
Q Consensus 154 ~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 233 (652)
-.+.||+..-++.+.+.+..+ -.|.+||.+-+.+-|.|++.++. .+.++++..++|..+.......
T Consensus 365 lvF~gse~~K~lA~rq~v~~g-----------~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~ 430 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASG-----------FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDET 430 (593)
T ss_pred heeeecchhHHHHHHHHHhcc-----------CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHH
Confidence 358888888888887777654 34568999999999999999887 3477899999998776655544
Q ss_pred hc----CCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcch
Q 006272 234 LK----KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271 (652)
Q Consensus 234 ~~----~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah 271 (652)
+. ....|+||| +++.++ +++.++.+||-+..-
T Consensus 431 ~~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 431 MERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFP 466 (593)
T ss_pred HHHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCC
Confidence 42 458999999 566665 889999999997655
No 370
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.70 E-value=1.9 Score=41.98 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=34.2
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 211 (652)
.|.-+++.+++|+|||......+.+.+.++. +++++.= .+-..++.+.+..++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~-------------~~~y~~~-e~~~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGK-------------KVYVITT-ENTSKSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCC-------------EEEEEEc-CCCHHHHHHHHHHCC
Confidence 3567899999999999866555555554322 3566554 344556666666654
No 371
>PRK06904 replicative DNA helicase; Validated
Probab=92.68 E-value=1.1 Score=48.50 Aligned_cols=120 Identities=17% Similarity=0.086 Sum_probs=58.6
Q ss_pred HHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHh-CCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCce
Q 006272 139 TFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217 (652)
Q Consensus 139 ~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~-~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~ 217 (652)
.+.-+..|.=+|+.|.||.|||... +-+...+. ... ..+++++. -.-..|+...+-... .++.
T Consensus 214 ~t~Gl~~G~LiiIaarPg~GKTafa-lnia~~~a~~~g------------~~Vl~fSl-EMs~~ql~~Rlla~~--s~v~ 277 (472)
T PRK06904 214 KTAGLQPSDLIIVAARPSMGKTTFA-MNLCENAAMASE------------KPVLVFSL-EMPAEQIMMRMLASL--SRVD 277 (472)
T ss_pred HHhccCCCcEEEEEeCCCCChHHHH-HHHHHHHHHhcC------------CeEEEEec-cCCHHHHHHHHHHhh--CCCC
Confidence 3333445566889999999999744 33333332 211 13666654 244556665554332 2222
Q ss_pred EEEEeCC--cchHHH------HHHhcCCCcEEE-----eCcHHHHHHHHhCCcCCCCceEEecCcchhhh
Q 006272 218 SCCLYGG--APYHAQ------EFKLKKGIDVVI-----GTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (652)
Q Consensus 218 ~~~~~gg--~~~~~~------~~~~~~~~~Ilv-----~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l 274 (652)
...+..+ .+...+ ...+...+++.| .|+..+...+.+-......+++||||=.+.|.
T Consensus 278 ~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 278 QTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 2222222 121111 122323344666 34555544333211112357899999888774
No 372
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.68 E-value=0.27 Score=45.63 Aligned_cols=48 Identities=27% Similarity=0.391 Sum_probs=28.1
Q ss_pred HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHH
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~ 204 (652)
+-.++++++.+++|+|||..+...+-+.+..+. .+++ +++.+|...+.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~-------------~v~f-~~~~~L~~~l~ 91 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGY-------------SVLF-ITASDLLDELK 91 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT---------------EEE-EEHHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCc-------------ceeE-eecCceecccc
Confidence 346789999999999999865444434443321 2444 55667766543
No 373
>PRK04328 hypothetical protein; Provisional
Probab=92.64 E-value=0.82 Score=45.07 Aligned_cols=54 Identities=17% Similarity=0.205 Sum_probs=37.6
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 212 (652)
.|..+++.+++|+|||+..+..+.+.+.++. .+++++ +.+-..++.+.++.++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge-------------~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-------------PGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC-------------cEEEEE-eeCCHHHHHHHHHHcCC
Confidence 4577999999999999866655666555432 266666 55666677777776653
No 374
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.58 E-value=1.9 Score=39.00 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=37.9
Q ss_pred CCCceEEecCcchhhhhcCc--HHHHHHHHHhccCCCCceEEEEcccCChHHHHHHH
Q 006272 259 LSSLKFRVLDEADEMLRMGF--VEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf--~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~ 313 (652)
...+++|||||+=..++.++ .+.+..++...|. ..-+|+.+-.+|+++...+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~--~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPE--DLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCC--CCEEEEECCCCCHHHHHhCc
Confidence 45689999999999888874 4556666666554 55677777777877765544
No 375
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.58 E-value=0.15 Score=53.96 Aligned_cols=47 Identities=32% Similarity=0.316 Sum_probs=36.7
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
++++.|+||||||.++++|-+-.. . ..++|+=|--|+....+...+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~--~-------------~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW--P-------------GSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC--C-------------CCEEEEccchhHHHHHHHHHHH
Confidence 478999999999999999976432 1 1389999999999877766554
No 376
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.48 E-value=0.27 Score=53.73 Aligned_cols=85 Identities=16% Similarity=0.313 Sum_probs=65.1
Q ss_pred hhhhhHHHHH-HhhCCCCeEEEEecchhHHHHHHHhcC-----CCcccccccchHHHHHHHhhhcCCCceEEEEcccccc
Q 006272 348 ARSQVIPDII-RCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (652)
Q Consensus 348 ~~~~~l~~ll-~~~~~~~~~iVF~~s~~~~~~l~~~l~-----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 421 (652)
.|..+...++ .....++++||.++++.-+.++++.|+ .+..+||+++..+|..++....+|+.+|+|+|..+..
T Consensus 9 GKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf 88 (505)
T TIGR00595 9 GKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF 88 (505)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc
Confidence 3444333333 233456799999999999988887775 5788999999999999999999999999999965433
Q ss_pred CCCCCCccEEEE
Q 006272 422 GLDINDVQLIIQ 433 (652)
Q Consensus 422 Gldi~~v~~VI~ 433 (652)
+.++++.+||.
T Consensus 89 -~p~~~l~lIIV 99 (505)
T TIGR00595 89 -LPFKNLGLIIV 99 (505)
T ss_pred -CcccCCCEEEE
Confidence 45778888775
No 377
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=92.36 E-value=0.44 Score=48.88 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=24.0
Q ss_pred eEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCC
Q 006272 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (652)
Q Consensus 263 ~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 305 (652)
-+|+|||+|++. ..+-..++..+.+ -.++++-||--
T Consensus 106 tiLflDEIHRfn----K~QQD~lLp~vE~---G~iilIGATTE 141 (436)
T COG2256 106 TILFLDEIHRFN----KAQQDALLPHVEN---GTIILIGATTE 141 (436)
T ss_pred eEEEEehhhhcC----hhhhhhhhhhhcC---CeEEEEeccCC
Confidence 368999999985 3344445555543 46788888853
No 378
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.36 E-value=0.21 Score=54.55 Aligned_cols=50 Identities=30% Similarity=0.347 Sum_probs=39.4
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 211 (652)
.++++.||||||||..|.+|.+-. ... .+||+=|--||....+..++..+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~~~-------------s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--YPG-------------SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--ccC-------------CEEEEECCCcHHHHHHHHHHHCC
Confidence 579999999999999999997632 211 28999999999988777666643
No 379
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.35 E-value=0.51 Score=51.74 Aligned_cols=20 Identities=25% Similarity=0.082 Sum_probs=15.9
Q ss_pred cEEEEccCCCCchhhhHHHH
Q 006272 148 DLVGRARTGQGKTLAFVLPI 167 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpi 167 (652)
-+|+.||.|+|||..+.+.+
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999998665443
No 380
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.26 E-value=2.5 Score=44.00 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=63.5
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCc
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~ 225 (652)
.+-+.+.|+.|.|||+. +-++........+ .| +..-+.+.+++..+..+... ..
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~~~k----------~R----~HFh~Fm~~vh~~l~~~~~~----------~~ 115 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPIKRK----------RR----VHFHEFMLDVHSRLHQLRGQ----------DD 115 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCcccc----------cc----ccccHHHHHHHHHHHHHhCC----------Cc
Confidence 35699999999999973 3333222222111 01 13447777888887765400 00
Q ss_pred chHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCC
Q 006272 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (652)
Q Consensus 226 ~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 305 (652)
+.. .+.+.+ .....+|+|||.|- .|.+-.-.+..++..+-.. .+-+++.|-+.|
T Consensus 116 ~l~------------------~va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~-gvvlVaTSN~~P 169 (362)
T PF03969_consen 116 PLP------------------QVADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKR-GVVLVATSNRPP 169 (362)
T ss_pred cHH------------------HHHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHC-CCEEEecCCCCh
Confidence 000 111221 34567899999994 3555455566666666432 567777788877
Q ss_pred hHH
Q 006272 306 SWV 308 (652)
Q Consensus 306 ~~~ 308 (652)
..+
T Consensus 170 ~~L 172 (362)
T PF03969_consen 170 EDL 172 (362)
T ss_pred HHH
Confidence 644
No 381
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.22 E-value=0.22 Score=52.77 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHhcCCc--EEEEccCCCCchhhhHHHHHHHHhCC
Q 006272 133 FPIQAMTFDMVLDGSD--LVGRARTGQGKTLAFVLPILESLTNG 174 (652)
Q Consensus 133 ~~~Q~~~i~~~l~~~d--vl~~a~TGsGKTl~~~lpil~~l~~~ 174 (652)
++.|.+.+..+++... +|+.+|||||||++ +..+++.+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 6788888888876654 88999999999986 44556666543
No 382
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=92.19 E-value=0.29 Score=55.39 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=65.6
Q ss_pred HHHHHHhhCCCCeEEEEecchhHHHHHHHhcC--------CCcccccccchHHHHHHHhhhcCCCceEEEEcccc-ccCC
Q 006272 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA-ARGL 423 (652)
Q Consensus 353 l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~--------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~-~~Gl 423 (652)
+..++.....+.+++|.++|+.-|.+.++.+. .+..+||+++..+|..+++...+|+..|+|+|... ...+
T Consensus 274 ~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~ 353 (630)
T TIGR00643 274 ALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV 353 (630)
T ss_pred HHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc
Confidence 33445555567899999999999988876654 46789999999999999999999999999999644 4567
Q ss_pred CCCCccEEEE
Q 006272 424 DINDVQLIIQ 433 (652)
Q Consensus 424 di~~v~~VI~ 433 (652)
.+.++.+||.
T Consensus 354 ~~~~l~lvVI 363 (630)
T TIGR00643 354 EFKRLALVII 363 (630)
T ss_pred cccccceEEE
Confidence 8888898884
No 383
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=92.17 E-value=0.99 Score=47.38 Aligned_cols=47 Identities=11% Similarity=0.009 Sum_probs=22.2
Q ss_pred EEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC--CceeeecCh
Q 006272 519 VVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG--NGAVFDVPV 567 (652)
Q Consensus 519 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~--~~a~~dv~~ 567 (652)
+++..--.-..+..+..++.. +|..+...|.... ..+. .|+||++-.
T Consensus 291 i~V~nlP~da~~~~l~~~Fk~-FG~Ik~~~I~vr~-~~~~~~~fgFV~f~~ 339 (419)
T KOG0116|consen 291 IFVKNLPPDATPAELEEVFKQ-FGPIKEGGIQVRS-PGGKNPCFGFVEFEN 339 (419)
T ss_pred eEeecCCCCCCHHHHHHHHhh-cccccccceEEec-cCCCcCceEEEEEee
Confidence 444433333455556555555 4544433443322 1122 577887755
No 384
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.15 E-value=0.21 Score=51.54 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=30.4
Q ss_pred HHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHH
Q 006272 142 MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (652)
Q Consensus 142 ~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 200 (652)
++..+++++++++||||||+. +-.++..+... -+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~~-------------~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIPPQ-------------ERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccCCC-------------CCEEEECCCcccc
Confidence 344789999999999999974 33344333221 2477777888774
No 385
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=91.99 E-value=0.28 Score=57.44 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=64.0
Q ss_pred HHHhhCCCCeEEEEecchhHHHHHHHhcC--------CCcccccccchHHHHHHHhhhcCCCceEEEEcc-ccccCCCCC
Q 006272 356 IIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-VAARGLDIN 426 (652)
Q Consensus 356 ll~~~~~~~~~iVF~~s~~~~~~l~~~l~--------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~-~~~~Gldi~ 426 (652)
++.....+.+++|.++|..-|.+.+..+. .+..+++..+..++..++..+.+|..+|+|+|. .+...+.+.
T Consensus 493 ~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~ 572 (926)
T TIGR00580 493 AFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFK 572 (926)
T ss_pred HHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcc
Confidence 34444456899999999999999887665 356789999999999999999999999999995 555678888
Q ss_pred CccEEEE
Q 006272 427 DVQLIIQ 433 (652)
Q Consensus 427 ~v~~VI~ 433 (652)
++.+||.
T Consensus 573 ~L~llVI 579 (926)
T TIGR00580 573 DLGLLII 579 (926)
T ss_pred cCCEEEe
Confidence 9998885
No 386
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.93 E-value=1.9 Score=44.17 Aligned_cols=17 Identities=35% Similarity=0.385 Sum_probs=14.7
Q ss_pred cEEEEccCCCCchhhhH
Q 006272 148 DLVGRARTGQGKTLAFV 164 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~ 164 (652)
.+++.||+|+|||.+..
T Consensus 40 ~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL 56 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 59999999999998644
No 387
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=1.1 Score=45.99 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=15.1
Q ss_pred CcEEEEccCCCCchhhh
Q 006272 147 SDLVGRARTGQGKTLAF 163 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~ 163 (652)
+|++..+|+|+|||+++
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 68999999999999753
No 388
>PRK10867 signal recognition particle protein; Provisional
Probab=91.86 E-value=1.2 Score=47.46 Aligned_cols=21 Identities=19% Similarity=-0.007 Sum_probs=16.4
Q ss_pred cEEEEccCCCCchhhhHHHHH
Q 006272 148 DLVGRARTGQGKTLAFVLPIL 168 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpil 168 (652)
-+++++++|+|||++..-.+.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478999999999986554443
No 389
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.84 E-value=1.3 Score=46.34 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=51.3
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCC
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg 224 (652)
.|.-+++.+++|+|||+..+..+.+....+ ..++++.-. +-..|+.....+++... .-..++..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g-------------~~VlYvs~E-Es~~qi~~Ra~rlg~~~--~~l~l~~e 144 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRG-------------GKVLYVSGE-ESPEQIKLRADRLGIST--ENLYLLAE 144 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-------------CeEEEEECC-cCHHHHHHHHHHcCCCc--ccEEEEcc
Confidence 456789999999999985544433322221 147787654 45567766666554211 11111110
Q ss_pred cchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhh
Q 006272 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (652)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l 274 (652)
...+.+.+.+.. .+.++||||+++.+.
T Consensus 145 ------------------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 ------------------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred ------------------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 112334444432 357899999999875
No 390
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.81 E-value=0.43 Score=47.04 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=20.3
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHhCCC
Q 006272 148 DLVGRARTGQGKTLAFVLPILESLTNGP 175 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpil~~l~~~~ 175 (652)
=|+|.+|||||||++ +..++..+....
T Consensus 127 LILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 127 LILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred eEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 388999999999986 445667666543
No 391
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.73 E-value=2.2 Score=39.16 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=36.1
Q ss_pred CCCceEEecCcchhhhhcCc--HHHHHHHHHhccCCCCceEEEEcccCChHHHHHHH
Q 006272 259 LSSLKFRVLDEADEMLRMGF--VEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf--~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~ 313 (652)
-..+++||+||+=..++.++ .+++..++...|. ..-+|+.--..|+++..++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~--~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPG--HQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCC--CCEEEEECCCCCHHHHHhCc
Confidence 35689999999999998884 3455566665554 45566655567776665544
No 392
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.71 E-value=0.44 Score=49.02 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=29.2
Q ss_pred HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHH
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 200 (652)
+..+++++++++||||||.. +-.++..+... -+++++--+.||.
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~~-------------~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPAI-------------ERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCCC-------------CeEEEecCCCccc
Confidence 34678999999999999973 34444444322 2466666666654
No 393
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.69 E-value=0.97 Score=50.65 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=26.6
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCC
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 305 (652)
....+++||||||.|.. .....++..+..++..-+++|.+|-+
T Consensus 119 ~~~~KVvIIdea~~Ls~----~a~naLLK~LEepp~~tifIL~tt~~ 161 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ----AAFNAFLKTLEEPPSYAIFILATTEK 161 (614)
T ss_pred cCCcEEEEEECcccCCH----HHHHHHHHHHhCCCCCeEEEEEeCCc
Confidence 46789999999999853 33444555554433334555666643
No 394
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.68 E-value=1.5 Score=47.75 Aligned_cols=40 Identities=8% Similarity=0.013 Sum_probs=23.9
Q ss_pred hhHHHHHhhCChhhhhccccEEeecCCCceeeecChhhHH
Q 006272 532 FAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLD 571 (652)
Q Consensus 532 ~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~~~a~ 571 (652)
-++.-|.+..|......+.+..+..+.+..+|.|+....+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (486)
T PRK14953 390 KIILQIIKNEGKIISAILKNAEIKEEEGKITIKVEKSEED 429 (486)
T ss_pred HHHHHHHhhhhHHHHHHHhhhhhhhhcCceEEEecccHHH
Confidence 3556666666555555566666666667777776643333
No 395
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.68 E-value=0.92 Score=50.22 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=26.8
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCC
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 305 (652)
....+++||||+|.|.. .....++..+..++..-+++|.+|-+
T Consensus 117 ~~~~KVvIIDEa~~Ls~----~a~naLLK~LEepp~~~vfI~~tte~ 159 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSN----SAFNALLKTIEEPPPYIVFIFATTEV 159 (563)
T ss_pred cCCCEEEEEEChhhcCH----HHHHHHHHhhccCCCCEEEEEecCCh
Confidence 46788999999998853 34455566665543444444555543
No 396
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.58 E-value=0.61 Score=51.32 Aligned_cols=20 Identities=20% Similarity=0.110 Sum_probs=15.9
Q ss_pred cEEEEccCCCCchhhhHHHH
Q 006272 148 DLVGRARTGQGKTLAFVLPI 167 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpi 167 (652)
-+|+.||.|+|||+++.+.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lA 59 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILA 59 (527)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999998665543
No 397
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=91.53 E-value=0.34 Score=53.79 Aligned_cols=49 Identities=27% Similarity=0.123 Sum_probs=40.4
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.++++.||||||||..|.+|-+-.. .. .+||+=|--|+....+...++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~--~~-------------S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW--ED-------------SVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC--CC-------------CEEEEeCcHHHHHHHHHHHHHC
Confidence 5799999999999999999987542 11 2899999999998888777664
No 398
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.34 E-value=1.5 Score=47.40 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=16.0
Q ss_pred CcEEEEccCCCCchhhhHHH
Q 006272 147 SDLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lp 166 (652)
+.+|+.||.|+|||.++...
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~l 59 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIF 59 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 34789999999999865543
No 399
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.23 E-value=1.9 Score=51.99 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=66.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCc
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~ 262 (652)
+.+++|++|+++-+..+++.+.... .++.+..++|+.+.......+ ....+|+|||. .+ ...+++.++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~--p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Ii-erGIDIP~v 880 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----II-ETGIDIPTA 880 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hh-hcccccccC
Confidence 3479999999999999999888764 356788899998877655444 35789999993 33 346789999
Q ss_pred eEEecCcchhhhhcCcHHHHHHHHHhc
Q 006272 263 KFRVLDEADEMLRMGFVEDVELILGKV 289 (652)
Q Consensus 263 ~~lViDEah~~l~~gf~~~~~~i~~~~ 289 (652)
++||++.+|++ + ..++..+....
T Consensus 881 ~~VIi~~ad~f---g-laq~~Qr~GRv 903 (1147)
T PRK10689 881 NTIIIERADHF---G-LAQLHQLRGRV 903 (1147)
T ss_pred CEEEEecCCCC---C-HHHHHHHhhcc
Confidence 99999999864 2 23444444444
No 400
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=2.8 Score=44.67 Aligned_cols=69 Identities=23% Similarity=0.207 Sum_probs=44.1
Q ss_pred ccCCCHHHHHHHHHCCCCCChHHHHHHHHH----HhcC--------CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcc
Q 006272 113 RFRISVPLREKLKSKGIESLFPIQAMTFDM----VLDG--------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180 (652)
Q Consensus 113 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~----~l~~--------~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~ 180 (652)
.|+++++-++.....|+....|.=.+.+.. +.+- ..+++.+|.|||||..+.-.++.
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~----------- 561 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS----------- 561 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh-----------
Confidence 478999988888888776655544444321 1111 35999999999999643322221
Q ss_pred cCCCCCCCeEEEEecc
Q 006272 181 KTGYGRAPSVLVLLPT 196 (652)
Q Consensus 181 ~~~~~~~~~~lil~Pt 196 (652)
..-|.+=|++|.
T Consensus 562 ----S~FPFvKiiSpe 573 (744)
T KOG0741|consen 562 ----SDFPFVKIISPE 573 (744)
T ss_pred ----cCCCeEEEeChH
Confidence 234567788884
No 401
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.12 E-value=0.46 Score=53.35 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=38.1
Q ss_pred CCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 260 ~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
...=+||||..|++.+......+..++++.|. +.+.++.|=+-|+
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~--~l~lvv~SR~rP~ 172 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPE--NLTLVVTSRSRPQ 172 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCC--CeEEEEEeccCCC
Confidence 34468999999999988888899999999988 8889988887654
No 402
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.09 E-value=1.2 Score=44.32 Aligned_cols=29 Identities=14% Similarity=0.004 Sum_probs=21.5
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhC
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~ 173 (652)
.|.-+++.+++|+|||...+-.+.+.+.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~ 63 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR 63 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 45679999999999998665555555443
No 403
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=91.08 E-value=2.8 Score=45.75 Aligned_cols=128 Identities=17% Similarity=0.176 Sum_probs=83.9
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhc-CCCce-EEEEeCC
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG-AVGLT-SCCLYGG 224 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~-~~~~~-~~~~~gg 224 (652)
|-.+..-|=--|||. |+.||+..++.. -.+.++.+++.-|.-++-|.+++...+. ..+-+ +...
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s----------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~--- 268 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN----------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN--- 268 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh----------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee---
Confidence 456778899999997 688888877763 2355799999999988888877753221 11111 1111
Q ss_pred cchHHHHHHhcCCCcEEEeCcHHH-----HHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEE
Q 006272 225 APYHAQEFKLKKGIDVVIGTPGRI-----KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299 (652)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~rl-----~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~ 299 (652)
++-.|.+.-|+.= ......+.+.=+++.++++||||-+- .+.+..|+..+... +.++|+
T Consensus 269 -----------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~-~~KiIf 332 (668)
T PHA03372 269 -----------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQN-TTKIIF 332 (668)
T ss_pred -----------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhccc-CceEEE
Confidence 1123444444322 11223345556778999999999774 56677888887654 678888
Q ss_pred EcccC
Q 006272 300 FSATL 304 (652)
Q Consensus 300 ~SAT~ 304 (652)
.|.|-
T Consensus 333 ISS~N 337 (668)
T PHA03372 333 ISSTN 337 (668)
T ss_pred EeCCC
Confidence 88884
No 404
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.08 E-value=1.1 Score=51.34 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
..++|+.+|+|+|||...-
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999998644
No 405
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.07 E-value=0.3 Score=45.78 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=26.3
Q ss_pred CChHHHHHHHHHHh-cCCcEEEEccCCCCchhhh
Q 006272 131 SLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l-~~~dvl~~a~TGsGKTl~~ 163 (652)
.+++-|.+.+.... .+..+++++|||||||+.+
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 35677888886655 6789999999999999853
No 406
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=90.83 E-value=0.33 Score=52.87 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l----~~~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
+|+.||.+.+..+. .|+--|.-+|||+||||..+=..+..|.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 68899988876554 7898999999999999976656665553
No 407
>PRK08506 replicative DNA helicase; Provisional
Probab=90.83 E-value=1.3 Score=48.13 Aligned_cols=115 Identities=16% Similarity=0.094 Sum_probs=56.5
Q ss_pred HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEe
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~ 222 (652)
+..|.-+++.|+||.|||...+-.+.+.+..+ ..+++++. -.-..|+...+-... .++....+.
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~~~g-------------~~V~~fSl-EMs~~ql~~Rlla~~--s~v~~~~i~ 252 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKALNQD-------------KGVAFFSL-EMPAEQLMLRMLSAK--TSIPLQNLR 252 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHHhcC-------------CcEEEEeC-cCCHHHHHHHHHHHh--cCCCHHHHh
Confidence 33456688999999999975554444433221 12566643 244556665553322 222221111
Q ss_pred -CCcchHHH------HHHhcCCCcEEEe-----CcHHHHHHHHhCCcCCCCceEEecCcchhhh
Q 006272 223 -GGAPYHAQ------EFKLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (652)
Q Consensus 223 -gg~~~~~~------~~~~~~~~~Ilv~-----Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l 274 (652)
|..+.... ...+.. ..+.|- |+..+...+.+-......+++||||=.+.|.
T Consensus 253 ~~~l~~~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 253 TGDLDDDEWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred cCCCCHHHHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 22221111 122222 344442 3444544443211112357899999998774
No 408
>PHA00729 NTP-binding motif containing protein
Probab=90.80 E-value=2.2 Score=40.96 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=14.1
Q ss_pred cEEEEccCCCCchhhh
Q 006272 148 DLVGRARTGQGKTLAF 163 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~ 163 (652)
++++.+++|+|||..+
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999643
No 409
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.77 E-value=1.2 Score=47.70 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=26.1
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHH
Q 006272 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170 (652)
Q Consensus 128 g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~ 170 (652)
|+.+.++---..+.-+..|.-+++.|+||+|||...+--+.+.
T Consensus 176 gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~ 218 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENV 218 (421)
T ss_pred ceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 3433333333444444556778999999999997544444333
No 410
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=90.76 E-value=0.56 Score=46.27 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=35.2
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 208 (652)
.+.++++.|++|+|||..+..-. ..+.... .-++++++-+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~-~~l~~~g-------------~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIG-NELLKAG-------------ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHH-HHHHHcC-------------CeEEEEEHHHHHHHHHHHHh
Confidence 67899999999999997544333 3343321 14667778899988877654
No 411
>PF05729 NACHT: NACHT domain
Probab=90.68 E-value=1.9 Score=38.96 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=17.5
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHhC
Q 006272 148 DLVGRARTGQGKTLAFVLPILESLTN 173 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpil~~l~~ 173 (652)
-+++.|++|+|||.... -++..+..
T Consensus 2 ~l~I~G~~G~GKStll~-~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR-KLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHHH-HHHHHHHh
Confidence 47899999999998543 34444443
No 412
>PRK14873 primosome assembly protein PriA; Provisional
Probab=90.32 E-value=0.79 Score=51.69 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=69.0
Q ss_pred chhhhhhHHHHHHh-hCCCCeEEEEecchhHHHHHHHhcC------CCcccccccchHHHHHHHhhhcCCCceEEEEccc
Q 006272 346 SSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418 (652)
Q Consensus 346 ~~~~~~~l~~ll~~-~~~~~~~iVF~~s~~~~~~l~~~l~------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~ 418 (652)
.+.|.++...++.. +..++.+||.++.+..+.++...|+ .+..+|+++++.+|.+.+....+|+.+|+|.|-.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 34666666666644 4467799999999999888877775 4778999999999999999999999999999965
Q ss_pred cccCCCCCCccEEEEc
Q 006272 419 AARGLDINDVQLIIQC 434 (652)
Q Consensus 419 ~~~Gldi~~v~~VI~~ 434 (652)
+.- +-+++..+||..
T Consensus 250 AvF-aP~~~LgLIIvd 264 (665)
T PRK14873 250 AVF-APVEDLGLVAIW 264 (665)
T ss_pred eEE-eccCCCCEEEEE
Confidence 432 456677777753
No 413
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=3.3 Score=40.89 Aligned_cols=116 Identities=15% Similarity=0.189 Sum_probs=65.3
Q ss_pred HHHHhcCC-----cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCC
Q 006272 140 FDMVLDGS-----DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV 214 (652)
Q Consensus 140 i~~~l~~~-----dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~ 214 (652)
+|.+..|+ -+++-+|+|+||+. +.-++..-.+ ...+-+.+..|+..|.-+-+++-+
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSY--LAKAVATEAn---------------STFFSvSSSDLvSKWmGESEkLVk-- 215 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSY--LAKAVATEAN---------------STFFSVSSSDLVSKWMGESEKLVK-- 215 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHH--HHHHHHhhcC---------------CceEEeehHHHHHHHhccHHHHHH--
Confidence 46777775 49999999999995 3333322111 146666777787666544443321
Q ss_pred CceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC-------cHHHHHHHHH
Q 006272 215 GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-------FVEDVELILG 287 (652)
Q Consensus 215 ~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g-------f~~~~~~i~~ 287 (652)
.|..+-+ -+..+.|.|||+|.+.... -+..-..++-
T Consensus 216 --------------------------------nLFemAR-----e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLV 258 (439)
T KOG0739|consen 216 --------------------------------NLFEMAR-----ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLV 258 (439)
T ss_pred --------------------------------HHHHHHH-----hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHH
Confidence 0112211 2345789999999776322 1111122233
Q ss_pred hccC--CCCceEEEEcccCChHHHHH
Q 006272 288 KVED--ANKVQTLLFSATLPSWVKHI 311 (652)
Q Consensus 288 ~~~~--~~~~q~l~~SAT~~~~~~~~ 311 (652)
++.. ..+--++.+-||-.+|+...
T Consensus 259 QMqGVG~d~~gvLVLgATNiPw~LDs 284 (439)
T KOG0739|consen 259 QMQGVGNDNDGVLVLGATNIPWVLDS 284 (439)
T ss_pred hhhccccCCCceEEEecCCCchhHHH
Confidence 3321 12346889999988887543
No 414
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.02 E-value=1.3 Score=48.33 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=15.1
Q ss_pred cEEEEccCCCCchhhhHHH
Q 006272 148 DLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lp 166 (652)
-.|+.||.|+|||.++...
T Consensus 38 ayLf~Gp~G~GKTt~Ar~L 56 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARIF 56 (535)
T ss_pred eEEEECCCCCcHHHHHHHH
Confidence 3589999999999865543
No 415
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.95 E-value=2 Score=42.83 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=63.4
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCe-EEEEeccH-----------HHHHHHHHHHHHHhcC
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS-VLVLLPTR-----------ELAKQVHEDFDVYGGA 213 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~-~lil~Ptr-----------eLa~q~~~~~~~~~~~ 213 (652)
++-+++.+|+|+|||. .+-.+.+.|.-... .+... .||=...- -|+.++++.+..+...
T Consensus 177 NRliLlhGPPGTGKTS-LCKaLaQkLSIR~~--------~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTS-LCKALAQKLSIRTN--------DRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED 247 (423)
T ss_pred eeEEEEeCCCCCChhH-HHHHHHHhheeeec--------CccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 3568999999999995 23445555543211 11111 23333332 3666777777777777
Q ss_pred CCceEEEEeCCcc------------------------hHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCc
Q 006272 214 VGLTSCCLYGGAP------------------------YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (652)
Q Consensus 214 ~~~~~~~~~gg~~------------------------~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDE 269 (652)
.+.-+.+++.... .-.|.+.++..++++|-|...|.+. ++.-.+|-
T Consensus 248 ~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~s----------iD~AfVDR 317 (423)
T KOG0744|consen 248 RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDS----------IDVAFVDR 317 (423)
T ss_pred CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHH----------HHHHhhhH
Confidence 6766666654321 1124566666777877776655544 34455677
Q ss_pred chhhh
Q 006272 270 ADEML 274 (652)
Q Consensus 270 ah~~l 274 (652)
||-..
T Consensus 318 ADi~~ 322 (423)
T KOG0744|consen 318 ADIVF 322 (423)
T ss_pred hhhee
Confidence 77543
No 416
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=89.85 E-value=0.3 Score=47.59 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=15.8
Q ss_pred EEEccccccCCCCCCccEEEEcC
Q 006272 413 LVATNVAARGLDINDVQLIIQCE 435 (652)
Q Consensus 413 LvaT~~~~~Gldi~~v~~VI~~~ 435 (652)
-+.|---+.|+.++.|.+|+.-+
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~ 206 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSD 206 (234)
T ss_pred ceechHHcceEEeCCEEEEECCC
Confidence 35566667888888877666544
No 417
>PRK05973 replicative DNA helicase; Provisional
Probab=89.84 E-value=0.69 Score=44.92 Aligned_cols=83 Identities=20% Similarity=0.279 Sum_probs=50.4
Q ss_pred cCCCHHHHHHHHHCCCCC----------ChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCC
Q 006272 114 FRISVPLREKLKSKGIES----------LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183 (652)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~----------~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~ 183 (652)
.+++..+-+.-.+.||.. +|| ..+.+.-+..|.-+++.|++|+|||+..+-.+.+.+.++.
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge-------- 93 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGR-------- 93 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--------
Confidence 344555544445555543 445 2233444556778999999999999876666665554432
Q ss_pred CCCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006272 184 YGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (652)
Q Consensus 184 ~~~~~~~lil~PtreLa~q~~~~~~~~~ 211 (652)
.++|++- -+-..|+.+.+..++
T Consensus 94 -----~vlyfSl-Ees~~~i~~R~~s~g 115 (237)
T PRK05973 94 -----TGVFFTL-EYTEQDVRDRLRALG 115 (237)
T ss_pred -----eEEEEEE-eCCHHHHHHHHHHcC
Confidence 3666654 344667777777654
No 418
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.76 E-value=0.85 Score=47.56 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=17.2
Q ss_pred hcCCcEEEEccCCCCchhhh
Q 006272 144 LDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~~ 163 (652)
-.|+-+++.+|+|+|||...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred CCCCEEEEECCCCCChhHHH
Confidence 37889999999999999743
No 419
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=89.74 E-value=4.6 Score=45.73 Aligned_cols=118 Identities=14% Similarity=0.195 Sum_probs=74.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCc
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~ 262 (652)
+.++||+|+|+..+..+++.|... ++.+..++++.........+ ....+|+||| +. ....+++..+
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~-L~rGfDiP~v 511 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NL-LREGLDLPEV 511 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Ch-hcCCeeeCCC
Confidence 457999999999999999888764 56778888876654333222 3458899999 23 3356789999
Q ss_pred eEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHH
Q 006272 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314 (652)
Q Consensus 263 ~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~ 314 (652)
++||+-+++...-......+-.+........+-.++++--..+..+...+..
T Consensus 512 ~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 512 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred cEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHHH
Confidence 9999888886422212333333333332222345566655666655544443
No 420
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.69 E-value=0.22 Score=49.31 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=20.0
Q ss_pred hcCCcEEEEccCCCCchhhhHHHHHHHHhC
Q 006272 144 LDGSDLVGRARTGQGKTLAFVLPILESLTN 173 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~~~lpil~~l~~ 173 (652)
+...|+++.+|||||||+.+. .|..+++
T Consensus 95 L~KSNILLiGPTGsGKTlLAq--TLAk~Ln 122 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQ--TLAKILN 122 (408)
T ss_pred eeeccEEEECCCCCcHHHHHH--HHHHHhC
Confidence 345689999999999998544 3344444
No 421
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=89.64 E-value=1.8 Score=45.22 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=17.3
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
+.+++.||.|+|||.+... +...+.
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~-la~~l~ 61 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARI-FAKALN 61 (355)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHhc
Confidence 3579999999999975433 334443
No 422
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=89.63 E-value=0.9 Score=45.12 Aligned_cols=143 Identities=17% Similarity=0.103 Sum_probs=71.7
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCC
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg 224 (652)
.|.=+++.|+||.|||...+-.+.+.+.... ..+++++.= .-..++...+-... .++....+..+
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~------------~~vly~SlE-m~~~~l~~R~la~~--s~v~~~~i~~g 82 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGG------------YPVLYFSLE-MSEEELAARLLARL--SGVPYNKIRSG 82 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS------------SEEEEEESS-S-HHHHHHHHHHHH--HTSTHHHHHCC
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcC------------CeEEEEcCC-CCHHHHHHHHHHHh--hcchhhhhhcc
Confidence 4456899999999999876666666655421 247888752 11223333332222 12211112222
Q ss_pred cchHHHH-------HHhcCCCcEE-EeC----cHHHHHHHHhCCcCCCCceEEecCcchhhhhc----CcHHHHHHHHHh
Q 006272 225 APYHAQE-------FKLKKGIDVV-IGT----PGRIKDHIERGNIDLSSLKFRVLDEADEMLRM----GFVEDVELILGK 288 (652)
Q Consensus 225 ~~~~~~~-------~~~~~~~~Il-v~T----p~rl~~~l~~~~~~l~~~~~lViDEah~~l~~----gf~~~~~~i~~~ 288 (652)
.....+. ..+.. ..+. ..+ ++.+...+..-......+++||||=.|.|-.. .....+..+...
T Consensus 83 ~l~~~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~ 161 (259)
T PF03796_consen 83 DLSDEEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRE 161 (259)
T ss_dssp GCHHHHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHH
Confidence 2112211 12222 2343 343 44555555432222367899999999987653 234444444333
Q ss_pred c---cCCCCceEEEEccc
Q 006272 289 V---EDANKVQTLLFSAT 303 (652)
Q Consensus 289 ~---~~~~~~q~l~~SAT 303 (652)
+ ....++.++++|..
T Consensus 162 Lk~lA~~~~i~vi~~sQl 179 (259)
T PF03796_consen 162 LKALAKELNIPVIALSQL 179 (259)
T ss_dssp HHHHHHHHTSEEEEEEEB
T ss_pred HHHHHHHcCCeEEEcccc
Confidence 3 22235667776664
No 423
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=89.63 E-value=3.2 Score=42.79 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=25.8
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccC
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~ 304 (652)
....+++||||||+|.. .....+++.+..++..-+++|.++-
T Consensus 108 ~~~~kvviI~~a~~~~~----~a~NaLLK~LEEPp~~~~~Il~t~~ 149 (329)
T PRK08058 108 ESNKKVYIIEHADKMTA----SAANSLLKFLEEPSGGTTAILLTEN 149 (329)
T ss_pred ccCceEEEeehHhhhCH----HHHHHHHHHhcCCCCCceEEEEeCC
Confidence 45679999999999863 3344555555544333444555553
No 424
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.61 E-value=1.7 Score=45.65 Aligned_cols=41 Identities=15% Similarity=0.275 Sum_probs=23.7
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
+...++|||||+|.+.. ..+..++..+..++..-++++++|
T Consensus 106 ~~~~kiviIDE~~~l~~----~~~~~ll~~le~~~~~~~~Il~~~ 146 (367)
T PRK14970 106 TGKYKIYIIDEVHMLSS----AAFNAFLKTLEEPPAHAIFILATT 146 (367)
T ss_pred cCCcEEEEEeChhhcCH----HHHHHHHHHHhCCCCceEEEEEeC
Confidence 45678999999998853 234445554543222224445554
No 425
>PRK05748 replicative DNA helicase; Provisional
Probab=89.56 E-value=2.3 Score=46.05 Aligned_cols=145 Identities=15% Similarity=0.059 Sum_probs=67.2
Q ss_pred HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEe
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~ 222 (652)
+..|.-+++.|+||+|||...+-.+.+...... ..+++++. -.-..|+...+-... .++....+.
T Consensus 200 ~~~G~livIaarpg~GKT~~al~ia~~~a~~~g------------~~v~~fSl-Ems~~~l~~R~l~~~--~~v~~~~i~ 264 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVATKTD------------KNVAIFSL-EMGAESLVMRMLCAE--GNIDAQRLR 264 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHHHhCC------------CeEEEEeC-CCCHHHHHHHHHHHh--cCCCHHHhh
Confidence 344566899999999999754443333332211 12555543 344555555553221 122221111
Q ss_pred CCcchHHHH-------HHhcCCCcEEEe-----CcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC-----cHHHHHHH
Q 006272 223 GGAPYHAQE-------FKLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-----FVEDVELI 285 (652)
Q Consensus 223 gg~~~~~~~-------~~~~~~~~Ilv~-----Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g-----f~~~~~~i 285 (652)
.+.-...+. ..+.. .++.|. |+..+...+.+-.....++++||||=.+.|-..+ ....+..|
T Consensus 265 ~~~l~~~e~~~~~~a~~~l~~-~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i 343 (448)
T PRK05748 265 TGQLTDDDWPKLTIAMGSLSD-APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEI 343 (448)
T ss_pred cCCCCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHH
Confidence 222111111 12222 345543 3444444333211111258899999999774221 12233344
Q ss_pred HHhc---cCCCCceEEEEccc
Q 006272 286 LGKV---EDANKVQTLLFSAT 303 (652)
Q Consensus 286 ~~~~---~~~~~~q~l~~SAT 303 (652)
...+ ....++.++++|-.
T Consensus 344 ~~~LK~lAke~~i~vi~lsQl 364 (448)
T PRK05748 344 SRSLKALAKELKVPVIALSQL 364 (448)
T ss_pred HHHHHHHHHHhCCeEEEeccc
Confidence 3333 22225666666654
No 426
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=89.53 E-value=0.6 Score=52.54 Aligned_cols=49 Identities=24% Similarity=0.209 Sum_probs=39.1
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.++++.||||||||..|++|-+-.. .. .+||+=|--|+........+..
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~--~g-------------S~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF--KG-------------SVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC--CC-------------CEEEEeCCchHHHHHHHHHHhC
Confidence 5899999999999999999976432 11 3899999999988877766653
No 427
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.52 E-value=0.21 Score=46.20 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=29.6
Q ss_pred HHhcCCCcEEEeCcHHHHHHHHhCCcC--CCCceEEecCcchhhhh
Q 006272 232 FKLKKGIDVVIGTPGRIKDHIERGNID--LSSLKFRVLDEADEMLR 275 (652)
Q Consensus 232 ~~~~~~~~Ilv~Tp~rl~~~l~~~~~~--l~~~~~lViDEah~~l~ 275 (652)
+.....++|||++..-|++-..+..+. ..+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 444556999999999887655443221 23447899999998864
No 428
>PRK08840 replicative DNA helicase; Provisional
Probab=89.38 E-value=3.1 Score=45.01 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=23.9
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhH
Q 006272 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 128 g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~ 164 (652)
|+.+.++.--..+.-+..|.=+|+.|.||.|||...+
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafal 235 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAM 235 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHH
Confidence 4444444444444444556668899999999997543
No 429
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=89.34 E-value=2.1 Score=46.08 Aligned_cols=144 Identities=17% Similarity=0.067 Sum_probs=67.5
Q ss_pred HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEE-
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL- 221 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~- 221 (652)
+..|.-+++.|+||+|||...+-.+.+...... ..+++++. -.-..|+...+...... +....+
T Consensus 192 ~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g------------~~vl~~Sl-Em~~~~i~~R~~~~~~~--v~~~~~~ 256 (434)
T TIGR00665 192 LQPSDLIILAARPSMGKTAFALNIAENAAIKEG------------KPVAFFSL-EMSAEQLAMRMLSSESR--VDSQKLR 256 (434)
T ss_pred CCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCC------------CeEEEEeC-cCCHHHHHHHHHHHhcC--CCHHHhc
Confidence 334566899999999999754444444333211 12566653 33455555555443322 221111
Q ss_pred eCCcchHHH------HHHhcCCCcEEE-e----CcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC----cHHHHHHHH
Q 006272 222 YGGAPYHAQ------EFKLKKGIDVVI-G----TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG----FVEDVELIL 286 (652)
Q Consensus 222 ~gg~~~~~~------~~~~~~~~~Ilv-~----Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g----f~~~~~~i~ 286 (652)
.|....... ...+.. ..+.| . |+..+...+.+-.. -..+++||||=.+.|.... ....+..|.
T Consensus 257 ~g~l~~~~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~ 334 (434)
T TIGR00665 257 TGKLSDEDWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKR-EHGLGLIVIDYLQLMSGSGRSENRQQEVSEIS 334 (434)
T ss_pred cCCCCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCCCCCCCCHHHHHHHHH
Confidence 122221111 122222 33444 2 34445444332111 1347899999988774222 123344443
Q ss_pred Hhcc---CCCCceEEEEccc
Q 006272 287 GKVE---DANKVQTLLFSAT 303 (652)
Q Consensus 287 ~~~~---~~~~~q~l~~SAT 303 (652)
..+. ...++.++++|-.
T Consensus 335 ~~Lk~lA~e~~i~vi~lsql 354 (434)
T TIGR00665 335 RSLKALAKELNVPVIALSQL 354 (434)
T ss_pred HHHHHHHHHhCCeEEEEecc
Confidence 3332 2225566666643
No 430
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=89.22 E-value=4.2 Score=39.73 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=16.3
Q ss_pred cEEEEccCCCCchhhhHHHHHH
Q 006272 148 DLVGRARTGQGKTLAFVLPILE 169 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpil~ 169 (652)
-.++.||.|+|||+..+-.++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 3589999999999865544443
No 431
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=89.12 E-value=0.67 Score=52.97 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=50.3
Q ss_pred CCCeEEEEecchhHHHHHHHhcC---------CCc-ccccccchHHHHHHHhhhcCCCceEEEEccccc
Q 006272 362 SGGRTIIFTETKESASQLADLLP---------GAR-ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~---------~~~-~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~ 420 (652)
.+.++++.++|..-+.+.++.|. .+. .||+.|+..+++.++++|.+|.++|||+|..+-
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 56899999999998888888775 111 299999999999999999999999999997653
No 432
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=88.93 E-value=0.92 Score=46.86 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=40.9
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHh-cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHH
Q 006272 121 REKLKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (652)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~~l-~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 199 (652)
+..|.+.|+ +++.+.+.+..+. .+.+++++++||||||..+ -.++..+... .+.+++--+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~~~-------------~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVAPD-------------ERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCCCC-------------CcEEEECCccee
Confidence 455556665 4566777776555 5679999999999999743 2233332211 146777777777
Q ss_pred H
Q 006272 200 A 200 (652)
Q Consensus 200 a 200 (652)
.
T Consensus 218 ~ 218 (340)
T TIGR03819 218 R 218 (340)
T ss_pred c
Confidence 3
No 433
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.85 E-value=3 Score=45.54 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=43.0
Q ss_pred HHHHHHhc-----CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHh
Q 006272 138 MTFDMVLD-----GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (652)
Q Consensus 138 ~~i~~~l~-----~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~ 211 (652)
..+..++. |.-+++.+|+|+|||+..+..+.+.+.++. ++++++ +-|-..|+...++.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge-------------~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKE-------------RAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCC-------------eEEEEE-eeCCHHHHHHHHHHcC
Confidence 34555553 467999999999999876666665554432 477777 5688888888888775
No 434
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=88.82 E-value=1.6 Score=46.20 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.9
Q ss_pred CcEEEEccCCCCchhhh
Q 006272 147 SDLVGRARTGQGKTLAF 163 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~ 163 (652)
+.+++.+|+|+|||+..
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 57999999999999853
No 435
>PRK07004 replicative DNA helicase; Provisional
Probab=88.67 E-value=1.9 Score=46.59 Aligned_cols=26 Identities=19% Similarity=0.054 Sum_probs=18.5
Q ss_pred HhcCCcEEEEccCCCCchhhhHHHHH
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLPIL 168 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lpil 168 (652)
+..|.=+++.|.||+|||...+--+.
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~ 235 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGE 235 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHH
Confidence 44556688999999999975443333
No 436
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=88.63 E-value=5.6 Score=36.63 Aligned_cols=53 Identities=19% Similarity=0.339 Sum_probs=34.7
Q ss_pred CCceEEecCcchhhhhcCc--HHHHHHHHHhccCCCCceEEEEcc-cCChHHHHHHHHh
Q 006272 260 SSLKFRVLDEADEMLRMGF--VEDVELILGKVEDANKVQTLLFSA-TLPSWVKHISTKF 315 (652)
Q Consensus 260 ~~~~~lViDEah~~l~~gf--~~~~~~i~~~~~~~~~~q~l~~SA-T~~~~~~~~~~~~ 315 (652)
..+++||+||.-..+..++ .+.+..++..-|. -+-+++|. ..|+++...+...
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~---~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPE---HTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCC---CcEEEEECCCCCHHHHHHHHHH
Confidence 4688999999999998884 3445555554443 34555555 4677776665544
No 437
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=88.35 E-value=1.1 Score=50.68 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=70.5
Q ss_pred cCCchhhhhhHHHHHHh-hCCCCeEEEEecchhHHHHHHHhcC-----CCcccccccchHHHHHHHhhhcCCCceEEEEc
Q 006272 343 PCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (652)
Q Consensus 343 ~~~~~~~~~~l~~ll~~-~~~~~~~iVF~~s~~~~~~l~~~l~-----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT 416 (652)
-+..+.|.++...++.. +..+..+||-++.+....++...|+ .+..+|+++++.+|.....+..+|+.+|+|.|
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt 303 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT 303 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe
Confidence 34566677776666654 4567799999999888877777776 79999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEE
Q 006272 417 NVAARGLDINDVQLIIQ 433 (652)
Q Consensus 417 ~~~~~Gldi~~v~~VI~ 433 (652)
-.+- =.-++++-+||.
T Consensus 304 RSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 304 RSAL-FLPFKNLGLIIV 319 (730)
T ss_pred chhh-cCchhhccEEEE
Confidence 6532 234566777663
No 438
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=88.17 E-value=0.6 Score=51.58 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=58.0
Q ss_pred HhhhcCCCceEEEEccccccCCCCCCccEEE--------EcCCCCCHHHHHHHhhhcccCCCccc-ceeeccCCcc-hHH
Q 006272 402 LAGFRSGKFMTLVATNVAARGLDINDVQLII--------QCEPPRDVEAYIHRSGRTGRAGVEAA-ETITQVSDSV-IPA 471 (652)
Q Consensus 402 ~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI--------~~~~p~s~~~y~qr~GR~gR~g~~~~-~~i~~~~~~~-~~~ 471 (652)
-++|.+|+..|-|-+.+++-||-+..-+.|+ ...+|||.+..||..|||.|...-.. .+|+++.+-. ...
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 3579999999999999999999887655444 48899999999999999999986543 3343333322 234
Q ss_pred HHHHHHHHHh
Q 006272 472 FKSAAEELLN 481 (652)
Q Consensus 472 ~~~~~~~~~~ 481 (652)
|..+...-|+
T Consensus 930 FAS~VAKRLE 939 (1300)
T KOG1513|consen 930 FASIVAKRLE 939 (1300)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 439
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=88.06 E-value=0.87 Score=46.36 Aligned_cols=28 Identities=21% Similarity=0.130 Sum_probs=20.7
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
.|+-+.+.+|+|||||...+..+.+...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~ 81 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQK 81 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567899999999999865555554443
No 440
>PRK08760 replicative DNA helicase; Provisional
Probab=88.06 E-value=2.8 Score=45.51 Aligned_cols=114 Identities=19% Similarity=0.092 Sum_probs=55.7
Q ss_pred hcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeC
Q 006272 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~g 223 (652)
..|.=+++.|+||.|||...+-.+.+...... ..++|++. -.-..|+...+......... ..+..
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~g------------~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~--~~i~~ 291 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIKSK------------KGVAVFSM-EMSASQLAMRLISSNGRINA--QRLRT 291 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHhcC------------CceEEEec-cCCHHHHHHHHHHhhCCCcH--HHHhc
Confidence 34456889999999999755444433332211 12566644 23345666655443322221 11222
Q ss_pred CcchHHHH-------HHhcCCCcEEEe-----CcHHHHHHHHhCCcCCCCceEEecCcchhhh
Q 006272 224 GAPYHAQE-------FKLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (652)
Q Consensus 224 g~~~~~~~-------~~~~~~~~Ilv~-----Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l 274 (652)
+.-...+. ..+. ...+.|. |++.+...+.+-. .-..+++||||=.+.|.
T Consensus 292 g~l~~~e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 292 GALEDEDWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMS 352 (476)
T ss_pred CCCCHHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcC
Confidence 22111111 2222 2445443 3445544433211 12357899999998774
No 441
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=88.05 E-value=2.6 Score=44.71 Aligned_cols=70 Identities=19% Similarity=0.356 Sum_probs=55.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhc----CCCcEEEeCcHHHHHHHHhCCcCCCCc
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK----KGIDVVIGTPGRIKDHIERGNIDLSSL 262 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~----~~~~Ilv~Tp~rl~~~l~~~~~~l~~~ 262 (652)
.|.++|.+.++.=|.-+++.|.+. +++++.++|+.+.......|. ...+|+|||. .--..++..++
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------vAgRGIDIpnV 586 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD------VAGRGIDIPNV 586 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------ccccCCCCCcc
Confidence 456999999999998888888874 589999999999887766653 3689999994 22345778888
Q ss_pred eEEe
Q 006272 263 KFRV 266 (652)
Q Consensus 263 ~~lV 266 (652)
++||
T Consensus 587 SlVi 590 (673)
T KOG0333|consen 587 SLVI 590 (673)
T ss_pred ceee
Confidence 8875
No 442
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=88.04 E-value=1.7 Score=41.80 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=19.4
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHH
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESL 171 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l 171 (652)
|.-+++.+++|+|||...+..+.+..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46689999999999986555554443
No 443
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=87.97 E-value=1.3 Score=49.29 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCCCchhh
Q 006272 144 LDGSDLVGRARTGQGKTLA 162 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~ 162 (652)
..|+-+.+.+|+|||||+.
T Consensus 359 ~~G~~vaIvG~SGsGKSTL 377 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTL 377 (529)
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3678899999999999983
No 444
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=87.91 E-value=0.59 Score=43.39 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=30.1
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcc
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SA 302 (652)
+.+.+++++||...-+|......+..++..+... ..++++.|-
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH 156 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITL 156 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEEC
Confidence 3567899999999988887777776777665432 345555543
No 445
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=87.80 E-value=0.37 Score=42.94 Aligned_cols=117 Identities=24% Similarity=0.209 Sum_probs=60.1
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcc
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~ 226 (652)
..+++.+++|+|||+. ++-+.+.|....-+ ..=|++| +.+.=++-.++++..+..|..
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~g~k-----------vgGf~t~----------EVR~gGkR~GF~Ivdl~tg~~ 63 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREKGYK-----------VGGFITP----------EVREGGKRIGFKIVDLATGEE 63 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhcCce-----------eeeEEee----------eeecCCeEeeeEEEEccCCce
Confidence 3588999999999985 45566666654221 1234555 223334445666666654322
Q ss_pred hHHHHHHhcCCCcEEEeCcHHHHHHHHhC---Cc--CCCCceEEecCcchhhhh--cCcHHHHHHHHHh
Q 006272 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERG---NI--DLSSLKFRVLDEADEMLR--MGFVEDVELILGK 288 (652)
Q Consensus 227 ~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~---~~--~l~~~~~lViDEah~~l~--~gf~~~~~~i~~~ 288 (652)
..-... .....-|+-++...+.+.+- .+ -+..-+++||||.--|-- ..|...++.++..
T Consensus 64 ~~la~~---~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 64 GILARV---GFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred EEEEEc---CCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 110000 00112222222222222210 00 123357999999997742 3477778777744
No 446
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.79 E-value=6.3 Score=39.85 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=68.8
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEe-c-cHHHHH-HHHHHHHHHhcCCCceEEE-EeC
Q 006272 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL-P-TRELAK-QVHEDFDVYGGAVGLTSCC-LYG 223 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~-P-treLa~-q~~~~~~~~~~~~~~~~~~-~~g 223 (652)
-+++++-.|+|||++..-.+......+. ++++.+ - .|+=|. |+..+-++ .++.+.. -+|
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~-------------~VllaA~DTFRAaAiEQL~~w~er----~gv~vI~~~~G 203 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGK-------------SVLLAAGDTFRAAAIEQLEVWGER----LGVPVISGKEG 203 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCC-------------eEEEEecchHHHHHHHHHHHHHHH----hCCeEEccCCC
Confidence 3789999999999976544433333322 244443 2 344443 33333333 4454443 233
Q ss_pred CcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhc-CcHHHHHHHHHhccCC----CCceEE
Q 006272 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDA----NKVQTL 298 (652)
Q Consensus 224 g~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~-gf~~~~~~i~~~~~~~----~~~q~l 298 (652)
+.+... ..+-++.. .-+++++|++|=|-||-+. ..-..+++|.+-+... ++--++
T Consensus 204 ~DpAaV------------------afDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~ll 263 (340)
T COG0552 204 ADPAAV------------------AFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILL 263 (340)
T ss_pred CCcHHH------------------HHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEE
Confidence 332211 12222221 1345667777777776543 3566677776665432 122344
Q ss_pred EEcccCChHHHHHHHHhc
Q 006272 299 LFSATLPSWVKHISTKFL 316 (652)
Q Consensus 299 ~~SAT~~~~~~~~~~~~~ 316 (652)
.+=||....-..-++.|-
T Consensus 264 vlDAttGqnal~QAk~F~ 281 (340)
T COG0552 264 VLDATTGQNALSQAKIFN 281 (340)
T ss_pred EEEcccChhHHHHHHHHH
Confidence 458998876666566554
No 447
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=87.68 E-value=6.6 Score=41.00 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=61.4
Q ss_pred EEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHH-HHH---HHHHHhcC-CCceEEEEeCC
Q 006272 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ-VHE---DFDVYGGA-VGLTSCCLYGG 224 (652)
Q Consensus 150 l~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q-~~~---~~~~~~~~-~~~~~~~~~gg 224 (652)
|+.++.|+|||.+..+.++..+..... ...++++ ||..-+.+ +.. .+..+... ..+........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~----------~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP----------GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDR 69 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS------------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC----------CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCC
Confidence 578899999999888777777665432 1235555 66554444 222 33333322 12221111111
Q ss_pred cchHHHHHHhcCCCcEEEeCcHHH--HHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcc
Q 006272 225 APYHAQEFKLKKGIDVVIGTPGRI--KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (652)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~rl--~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SA 302 (652)
. ..+.++..|.+.+-..- ..-+. =..+.+|++||+-.+.+.-+...+...+.... ....+++|-
T Consensus 70 ~------~~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~ 135 (384)
T PF03237_consen 70 K------IILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWG---GSIRMYIST 135 (384)
T ss_dssp E------EEETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCST---T--EEEEEE
T ss_pred c------EEecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhccc---CcceEEeec
Confidence 0 00134455666663321 11111 24577999999987754433333333322221 222224444
Q ss_pred c--CChHHHHHHHHhc
Q 006272 303 T--LPSWVKHISTKFL 316 (652)
Q Consensus 303 T--~~~~~~~~~~~~~ 316 (652)
| ...+...+.....
T Consensus 136 p~~~~~~~~~~~~~~~ 151 (384)
T PF03237_consen 136 PPNPGGWFYEIFQRNL 151 (384)
T ss_dssp ---SSSHHHHHHHHHH
T ss_pred CCCCCCceeeeeehhh
Confidence 3 3345555666555
No 448
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=87.64 E-value=1.3 Score=51.44 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=38.0
Q ss_pred EEeCcHHHHHHHHhCCcCCCCceEEecCcchhh-------hhcCcHHHHHHHHHhccCC-CCceEEEEcccC
Q 006272 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM-------LRMGFVEDVELILGKVEDA-NKVQTLLFSATL 304 (652)
Q Consensus 241 lv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~-------l~~gf~~~~~~i~~~~~~~-~~~q~l~~SAT~ 304 (652)
-|+.++|=+.++....- -.....+.+||+|=+ .+.-....+..++..+... ..-|+++.+||.
T Consensus 344 wvgEaERqlrllFeeA~-k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 344 WVGEAERQLRLLFEEAQ-KTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred ccCcHHHHHHHHHHHHh-ccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 46777776666654322 345678999999932 2333344444555444322 256999999995
No 449
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=87.62 E-value=0.97 Score=50.74 Aligned_cols=50 Identities=30% Similarity=0.266 Sum_probs=38.4
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
..++++.||||||||..+.+|-+ +.... .++|+=|..|+...+....++.
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnL--L~~~g-------------S~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTA--LKWGG-------------PLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred CceEEEEeCCCCCccceEehhhh--hcCCC-------------CEEEEeCcHHHHHHHHHHHHHC
Confidence 35799999999999999999965 32211 2788889999988777766543
No 450
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=87.60 E-value=0.71 Score=46.19 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=33.6
Q ss_pred HHHHHHHH-HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHH
Q 006272 135 IQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (652)
Q Consensus 135 ~Q~~~i~~-~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 200 (652)
...+.+.. +..+.+++++|+||||||... -.++..+... ..+++++-.+.|+-
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~~~------------~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIPPE------------DERIVTIEDPPELR 168 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCHTT------------TSEEEEEESSS-S-
T ss_pred HHHHHHhhccccceEEEEECCCccccchHH-HHHhhhcccc------------ccceEEecccccee
Confidence 33444433 346789999999999999854 4455555443 12578888777763
No 451
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.59 E-value=2.7 Score=50.09 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=34.0
Q ss_pred CCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 260 ~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
..--+||||++|.+-+......+..++..++. ...+|+.|-+.|+
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~--~~~lv~~sR~~~~ 164 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPE--NLTLVVLSRNLPP 164 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCC--CeEEEEEeCCCCC
Confidence 34468999999988655566778888888766 6788888877654
No 452
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.44 E-value=1.1 Score=45.77 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=38.7
Q ss_pred CCCChHHHHHHHHHHh-cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHH
Q 006272 129 IESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (652)
Q Consensus 129 ~~~~~~~Q~~~i~~~l-~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 200 (652)
+..+++.|..-+..+. .+++++++++||||||.. +.+++..+-.. .+.+.+--|.|+.
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~-------------~rivtIEdt~E~~ 183 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPE-------------ERIVTIEDTPELK 183 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCch-------------hcEEEEecccccc
Confidence 4457777776665544 779999999999999973 44444443322 2467776766654
No 453
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.30 E-value=1.7 Score=42.29 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=26.9
Q ss_pred CceEEecCcchhhhhcCcHHHHHHHHHhccC
Q 006272 261 SLKFRVLDEADEMLRMGFVEDVELILGKVED 291 (652)
Q Consensus 261 ~~~~lViDEah~~l~~gf~~~~~~i~~~~~~ 291 (652)
+.+++|+||.=.++|..-...+..++..+..
T Consensus 156 ~P~iliLDEPta~LD~~~~~~l~~~l~~L~~ 186 (235)
T COG1122 156 GPEILLLDEPTAGLDPKGRRELLELLKKLKE 186 (235)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 3579999999999998888888888888876
No 454
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=87.30 E-value=4.8 Score=39.92 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=35.9
Q ss_pred CceEEecCcchhhhhcCcHHHHHHHHHhccC-----CCCceEEEEcccCChHHHHHHHHhc
Q 006272 261 SLKFRVLDEADEMLRMGFVEDVELILGKVED-----ANKVQTLLFSATLPSWVKHISTKFL 316 (652)
Q Consensus 261 ~~~~lViDEah~~l~~gf~~~~~~i~~~~~~-----~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (652)
.=+++|+||+|.| ..+..+.+.-.+.+.+. ..+.-.|++|-+-...+...+-.+.
T Consensus 178 ~rslFIFDE~DKm-p~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~ 237 (344)
T KOG2170|consen 178 QRSLFIFDEVDKL-PPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENA 237 (344)
T ss_pred CCceEEechhhhc-CHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHH
Confidence 3468999999988 45555666666654432 1245678899887766666555554
No 455
>PHA00350 putative assembly protein
Probab=87.27 E-value=2.1 Score=44.82 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=19.0
Q ss_pred EEEEccCCCCchhhhHH-HHHHHHhCC
Q 006272 149 LVGRARTGQGKTLAFVL-PILESLTNG 174 (652)
Q Consensus 149 vl~~a~TGsGKTl~~~l-pil~~l~~~ 174 (652)
.++.+..|||||+..+- -++..+..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC
Confidence 47899999999987664 455555544
No 456
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=87.27 E-value=0.66 Score=52.16 Aligned_cols=50 Identities=20% Similarity=0.108 Sum_probs=39.8
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
..++++.||||||||..+.+|-|-... . .+||+=|--|+........++.
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~~--~-------------S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTWP--G-------------SAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhCC--C-------------CEEEEeCcchHHHHHHHHHHhC
Confidence 368999999999999999999764331 1 2899999999988877766554
No 457
>PRK13764 ATPase; Provisional
Probab=87.16 E-value=1.2 Score=49.27 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=20.2
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
..+++++++|||||||+. +..++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 467899999999999974 344555553
No 458
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.16 E-value=3 Score=46.65 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=29.6
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHH---hcCCcEEEEccCCCCchhhhH
Q 006272 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMV---LDGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~---l~~~dvl~~a~TGsGKTl~~~ 164 (652)
...|..++++-..+..++.|... .-+.. ..++-+++.+|+|+|||.++-
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~-----------l~~~~~~~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETW-----------LKAQVLENAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHH-----------HHhcccccCCCcEEEEECCCCCCHHHHHH
Confidence 34556667777777665544322 11111 123448999999999998544
No 459
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=87.16 E-value=0.96 Score=50.94 Aligned_cols=46 Identities=26% Similarity=0.201 Sum_probs=36.5
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHH
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 207 (652)
.++++.||||||||..+++|-+-.. .. .+||+=|--|+....+...
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~--~~-------------S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW--GH-------------SSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC--CC-------------CEEEEeCcHHHHHHHHHHH
Confidence 6799999999999999999987432 11 3899999999987666554
No 460
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.11 E-value=3.1 Score=44.88 Aligned_cols=72 Identities=13% Similarity=0.291 Sum_probs=56.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhc----CCCcEEEeCcHHHHHHHHhCCcCCCC
Q 006272 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK----KGIDVVIGTPGRIKDHIERGNIDLSS 261 (652)
Q Consensus 186 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~----~~~~Ilv~Tp~rl~~~l~~~~~~l~~ 261 (652)
...++||.|-|+--|.++...++.. ++++.+++|+.+.......|+ ..+.|+|||. +-...+++.+
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------VAaRGLDi~d 409 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------VAARGLDVPD 409 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc------cccccCCCcc
Confidence 3457999999999999988888763 478999999999888777764 3689999993 3334677888
Q ss_pred ceEEec
Q 006272 262 LKFRVL 267 (652)
Q Consensus 262 ~~~lVi 267 (652)
+++||-
T Consensus 410 V~lVIn 415 (519)
T KOG0331|consen 410 VDLVIN 415 (519)
T ss_pred ccEEEe
Confidence 888864
No 461
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=87.07 E-value=3.7 Score=45.90 Aligned_cols=71 Identities=17% Similarity=0.316 Sum_probs=54.4
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCce
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~ 263 (652)
.++||.|+|+..+.++++.|... ++.+..++|+.+.......+ ....+|||||. .+. ..+++.+++
T Consensus 258 ~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~a-rGIDip~V~ 327 (572)
T PRK04537 258 ARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAA-RGLHIDGVK 327 (572)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhh-cCCCccCCC
Confidence 35899999999999999988764 57899999998876655444 24689999993 333 456788888
Q ss_pred EEecC
Q 006272 264 FRVLD 268 (652)
Q Consensus 264 ~lViD 268 (652)
+||.-
T Consensus 328 ~VIny 332 (572)
T PRK04537 328 YVYNY 332 (572)
T ss_pred EEEEc
Confidence 88753
No 462
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.00 E-value=1.2 Score=44.23 Aligned_cols=46 Identities=26% Similarity=0.383 Sum_probs=30.0
Q ss_pred HHHHCCCCCChHHHHHHHHHHhc--CCcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 123 KLKSKGIESLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 123 ~l~~~g~~~~~~~Q~~~i~~~l~--~~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
.|.++|+ .+.|.+.|..++. +.-+++.++||||||... ..++..+.
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~ 105 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELN 105 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhC
Confidence 3555664 4557777765553 345899999999999853 33444443
No 463
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=86.99 E-value=1.5 Score=43.00 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=15.5
Q ss_pred CcEEEEccCCCCchhhhHH
Q 006272 147 SDLVGRARTGQGKTLAFVL 165 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~l 165 (652)
.++++.+|+|.|||..+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 3699999999999975543
No 464
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=86.91 E-value=2.1 Score=43.36 Aligned_cols=108 Identities=18% Similarity=0.144 Sum_probs=58.3
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcc
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~ 226 (652)
..+|+.+|.|+|||..+-+.+. ... ....+.+=++-|.+-.+.+...|+.--.
T Consensus 163 pSmIlWGppG~GKTtlArlia~-----tsk--------~~SyrfvelSAt~a~t~dvR~ife~aq~-------------- 215 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIAS-----TSK--------KHSYRFVELSATNAKTNDVRDIFEQAQN-------------- 215 (554)
T ss_pred CceEEecCCCCchHHHHHHHHh-----hcC--------CCceEEEEEeccccchHHHHHHHHHHHH--------------
Confidence 3699999999999975433221 111 1223566666666655555554433110
Q ss_pred hHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 227 ~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
... ....=.+|.|||+|++-. .+-..++-.+. +--+++.-||--+
T Consensus 216 ---------------------~~~-------l~krkTilFiDEiHRFNk----sQQD~fLP~VE---~G~I~lIGATTEN 260 (554)
T KOG2028|consen 216 ---------------------EKS-------LTKRKTILFIDEIHRFNK----SQQDTFLPHVE---NGDITLIGATTEN 260 (554)
T ss_pred ---------------------HHh-------hhcceeEEEeHHhhhhhh----hhhhcccceec---cCceEEEecccCC
Confidence 000 122234688999999742 12222232332 2357778888655
Q ss_pred HHHHHHHHhc
Q 006272 307 WVKHISTKFL 316 (652)
Q Consensus 307 ~~~~~~~~~~ 316 (652)
.-.++....+
T Consensus 261 PSFqln~aLl 270 (554)
T KOG2028|consen 261 PSFQLNAALL 270 (554)
T ss_pred CccchhHHHH
Confidence 5555555555
No 465
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=86.90 E-value=0.99 Score=46.03 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=14.5
Q ss_pred CcEEEEccCCCCchhhh
Q 006272 147 SDLVGRARTGQGKTLAF 163 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~ 163 (652)
..+++.+|+|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999744
No 466
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=86.88 E-value=1.9 Score=45.39 Aligned_cols=150 Identities=15% Similarity=0.081 Sum_probs=79.4
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHH
Q 006272 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (652)
Q Consensus 120 l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 199 (652)
++..+++. +..+-..|.++.-..-.|+- .+.+=.|||||...++-+.+.-..+ ..-+++|.+=|+.|
T Consensus 152 ~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~kn-----------Pd~~I~~Tfftk~L 218 (660)
T COG3972 152 LLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKN-----------PDSRIAFTFFTKIL 218 (660)
T ss_pred HHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCC-----------CCceEEEEeehHHH
Confidence 44444442 33444567666544445554 6788999999986555444333332 23469999999999
Q ss_pred HHHHHHHHHHHhcC-----C---CceEEEEeCCcchHHH---HHHhcCCCcEEEeCcH----HHHHHHHhCCcCCCCceE
Q 006272 200 AKQVHEDFDVYGGA-----V---GLTSCCLYGGAPYHAQ---EFKLKKGIDVVIGTPG----RIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 200 a~q~~~~~~~~~~~-----~---~~~~~~~~gg~~~~~~---~~~~~~~~~Ilv~Tp~----rl~~~l~~~~~~l~~~~~ 264 (652)
+.++.....+++-. . .+.++.-.||...... -........+-++--| -+...+-...-+..-+++
T Consensus 219 ~s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ 298 (660)
T COG3972 219 ASTMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDY 298 (660)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccE
Confidence 99988877766521 1 2233333444432211 1111111222222111 112222222223667899
Q ss_pred EecCcchhhhhcCcHHHHH
Q 006272 265 RVLDEADEMLRMGFVEDVE 283 (652)
Q Consensus 265 lViDEah~~l~~gf~~~~~ 283 (652)
|.|||++-+- .+|.+...
T Consensus 299 ilIDE~QDFP-~~F~~Lcf 316 (660)
T COG3972 299 ILIDESQDFP-QSFIDLCF 316 (660)
T ss_pred EEecccccCC-HHHHHHHH
Confidence 9999999653 34444333
No 467
>PRK08006 replicative DNA helicase; Provisional
Probab=86.86 E-value=6.1 Score=42.87 Aligned_cols=145 Identities=14% Similarity=0.037 Sum_probs=67.5
Q ss_pred HHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEE
Q 006272 142 MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221 (652)
Q Consensus 142 ~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~ 221 (652)
-+..|.=+++.|.||.|||...+--+.+...... ..++|++. -.-..|+...+-... .++....+
T Consensus 220 Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g------------~~V~~fSl-EM~~~ql~~Rlla~~--~~v~~~~i 284 (471)
T PRK08006 220 GLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQD------------KPVLIFSL-EMPGEQIMMRMLASL--SRVDQTRI 284 (471)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcC------------CeEEEEec-cCCHHHHHHHHHHHh--cCCCHHHh
Confidence 3444556889999999999754433333332211 13566643 233455555543322 22222222
Q ss_pred e-CCcchHHHH------HHhcCCCcEEEe-----CcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC----cHHHHHHH
Q 006272 222 Y-GGAPYHAQE------FKLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG----FVEDVELI 285 (652)
Q Consensus 222 ~-gg~~~~~~~------~~~~~~~~Ilv~-----Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g----f~~~~~~i 285 (652)
. |..+...+. ..+.....+.|- |+..+...+.+-......+++||||=.+.|...+ ....+..|
T Consensus 285 ~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~i 364 (471)
T PRK08006 285 RTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEI 364 (471)
T ss_pred hcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHH
Confidence 2 222222211 122123445553 4444444443211112358899999999774221 22234444
Q ss_pred HHhc---cCCCCceEEEEc
Q 006272 286 LGKV---EDANKVQTLLFS 301 (652)
Q Consensus 286 ~~~~---~~~~~~q~l~~S 301 (652)
...+ ....++.+|++|
T Consensus 365 sr~LK~lAkel~ipVi~Ls 383 (471)
T PRK08006 365 SRSLKALAKELQVPVVALS 383 (471)
T ss_pred HHHHHHHHHHhCCeEEEEE
Confidence 3333 222355666665
No 468
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=86.80 E-value=8.3 Score=44.58 Aligned_cols=20 Identities=20% Similarity=0.051 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCCchhhhHH
Q 006272 146 GSDLVGRARTGQGKTLAFVL 165 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~l 165 (652)
..++|+.+|+|+|||...-.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 35899999999999986443
No 469
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.71 E-value=5.8 Score=40.78 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=32.7
Q ss_pred CCcccccCCCHHHHHHHHHC--------------CCCCChH-HHHHHH-H----HHhcC-----CcEEEEccCCCCchhh
Q 006272 108 PNAVSRFRISVPLREKLKSK--------------GIESLFP-IQAMTF-D----MVLDG-----SDLVGRARTGQGKTLA 162 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~--------------g~~~~~~-~Q~~~i-~----~~l~~-----~dvl~~a~TGsGKTl~ 162 (652)
...|+..+....|.+.|+.- |....-. .++.++ | .+.+| +-||+.+|+|||||+.
T Consensus 182 ~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 182 DKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLL 261 (491)
T ss_pred cCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHH
Confidence 34577777777787777541 1111111 122222 3 33344 6799999999999973
No 470
>PRK09087 hypothetical protein; Validated
Probab=86.68 E-value=2 Score=41.58 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=23.1
Q ss_pred EEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCCh
Q 006272 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (652)
Q Consensus 264 ~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 306 (652)
+|+||++|.+. .-...+-.++..+... ..+ ++++++.++
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~~~-g~~-ilits~~~p 128 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVRQA-GTS-LLMTSRLWP 128 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHHhC-CCe-EEEECCCCh
Confidence 78999999762 2245566666666542 234 555555433
No 471
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=86.68 E-value=11 Score=34.56 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=30.3
Q ss_pred CCCceEEecCcchhhhhcCc--HHHHHHHHHhccCCCCceEEEEcccCChHHHHHHH
Q 006272 259 LSSLKFRVLDEADEMLRMGF--VEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf--~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~ 313 (652)
-..+++||+||+=..++.++ .+++..++...|. ..-+|+.--.+|+++...+.
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~--~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPE--SLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-T--T-EEEEE-SS--HHHHHH-S
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCC--CeEEEEECCCCCHHHHHhCC
Confidence 45689999999999999885 3455555555443 44555554456666655443
No 472
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.29 E-value=5.9 Score=46.62 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=15.6
Q ss_pred CcEEEEccCCCCchhhhH
Q 006272 147 SDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~ 164 (652)
.++|+.+|+|+|||...-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 689999999999997654
No 473
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.25 E-value=1.6 Score=39.51 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=29.5
Q ss_pred CCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 260 ~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
....++++||...-+|......+..++..+... . ++++++.-
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~-~tii~~sh 138 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEE-G-RTVIIVTH 138 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-C-CEEEEEeC
Confidence 346899999999888877777787777776542 2 34444443
No 474
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=86.09 E-value=0.87 Score=50.83 Aligned_cols=49 Identities=29% Similarity=0.308 Sum_probs=38.4
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.++++.||||||||..+.+|-+ |.... .++|+=|.-|+...+...-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnL--L~~~g-------------S~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTA--LKYGG-------------PLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhh--hcCCC-------------CEEEEEChHHHHHHHHHHHHHc
Confidence 5899999999999999999964 32221 3899999999988777655544
No 475
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=86.07 E-value=2.1 Score=44.71 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=19.6
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
.+..+++++|||||||+.. -.++..+.
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 4456899999999999853 44555554
No 476
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=85.98 E-value=0.55 Score=45.45 Aligned_cols=57 Identities=11% Similarity=0.255 Sum_probs=30.8
Q ss_pred eCcHHHHHHHHhCCcCCCCceEEecCcchhhh-h----cCcHHHHHHHHHhccCCCCceEEEEcccC
Q 006272 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEML-R----MGFVEDVELILGKVEDANKVQTLLFSATL 304 (652)
Q Consensus 243 ~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l-~----~gf~~~~~~i~~~~~~~~~~q~l~~SAT~ 304 (652)
.+...++..+...... -+|||||+|.+. . ..+...+..++.......+ ..++++++.
T Consensus 104 ~~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~v~~~S~ 165 (234)
T PF01637_consen 104 SALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN-VSIVITGSS 165 (234)
T ss_dssp --HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT-EEEEEEESS
T ss_pred HHHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC-ceEEEECCc
Confidence 3344555555543222 689999999998 1 2356666666666443323 344566665
No 477
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.93 E-value=3.8 Score=48.02 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=14.2
Q ss_pred cEEEEccCCCCchhhhH
Q 006272 148 DLVGRARTGQGKTLAFV 164 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~ 164 (652)
.+++++|||+|||...-
T Consensus 598 ~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 598 VFLLVGPSGVGKTETAL 614 (852)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999997543
No 478
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=85.89 E-value=1 Score=45.82 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=28.8
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~ 201 (652)
.|+-+.+.+|+|||||...+..+.+....+ ..++++.+--.+-.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g-------------~~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLG-------------GTVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-------------CCEEEECccccHHH
Confidence 356788999999999976555454444332 23788876544443
No 479
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=85.87 E-value=11 Score=38.24 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=32.1
Q ss_pred HHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccC
Q 006272 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (652)
Q Consensus 248 l~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~ 304 (652)
|+..+..+.-.-+.--++|+||+|..........+..++...... ..++.++--|-
T Consensus 124 lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~-r~Piciig~Tt 179 (408)
T KOG2228|consen 124 LLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA-RAPICIIGVTT 179 (408)
T ss_pred HHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc-CCCeEEEEeec
Confidence 444555544433334578999999877666666666777665432 23344443343
No 480
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=85.85 E-value=3.8 Score=39.67 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=22.9
Q ss_pred HHHhcCC-cEEEEccCCCCchhhhHHHHHHHHhC
Q 006272 141 DMVLDGS-DLVGRARTGQGKTLAFVLPILESLTN 173 (652)
Q Consensus 141 ~~~l~~~-dvl~~a~TGsGKTl~~~lpil~~l~~ 173 (652)
+.+..++ -+.++++-|||||..-- .+++.+..
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~ 77 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRR-ALLASLNE 77 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHH-HHHHhcCC
Confidence 4455666 68899999999998766 45555443
No 481
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=85.85 E-value=4 Score=42.10 Aligned_cols=22 Identities=14% Similarity=-0.139 Sum_probs=15.8
Q ss_pred CcEEEEccCCCCchhhhHHHHH
Q 006272 147 SDLVGRARTGQGKTLAFVLPIL 168 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil 168 (652)
.-+.+.+++|||||...+..++
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav 148 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCV 148 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHH
Confidence 3467999999999974443333
No 482
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.84 E-value=4.7 Score=44.85 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=73.8
Q ss_pred HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEE-EEeccHHHHHHHHHHH-HHHhcCC-----C
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL-VLLPTRELAKQVHEDF-DVYGGAV-----G 215 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~l-il~PtreLa~q~~~~~-~~~~~~~-----~ 215 (652)
+..|+.+.+++|.|+|||.+. -++++++.... .+++ ==+|.+++=.++.+.- --.+... .
T Consensus 491 i~pGe~vALVGPSGsGKSTia--sLL~rfY~Pts-----------G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~s 557 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIA--SLLLRFYDPTS-----------GRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGS 557 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHH--HHHHHhcCCCC-----------CeEEECCeehhhcCHHHHHHHeeeeeccceeeccc
Confidence 346789999999999999954 46677776432 1121 1246666544433311 1111100 0
Q ss_pred ceEEEEeCCcchHH--------------HHHHhcCCCcEEEeCcHHHHHHHHhCC-----cCCCCceEEecCcchhhhhc
Q 006272 216 LTSCCLYGGAPYHA--------------QEFKLKKGIDVVIGTPGRIKDHIERGN-----IDLSSLKFRVLDEADEMLRM 276 (652)
Q Consensus 216 ~~~~~~~gg~~~~~--------------~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-----~~l~~~~~lViDEah~~l~~ 276 (652)
+.-...||-..... -+..+.++++=.|+.-|..+.==++.. --+.+.+++|+|||-.-||.
T Consensus 558 I~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDa 637 (716)
T KOG0058|consen 558 IRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDA 637 (716)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcch
Confidence 11111222221111 112222344445554443322111110 11677889999999999988
Q ss_pred CcHHHHHHHHHhccCCCCceEEEEcc
Q 006272 277 GFVEDVELILGKVEDANKVQTLLFSA 302 (652)
Q Consensus 277 gf~~~~~~i~~~~~~~~~~q~l~~SA 302 (652)
.-...+...+..+.. + ++++.=|
T Consensus 638 eSE~lVq~aL~~~~~--~-rTVlvIA 660 (716)
T KOG0058|consen 638 ESEYLVQEALDRLMQ--G-RTVLVIA 660 (716)
T ss_pred hhHHHHHHHHHHhhc--C-CeEEEEe
Confidence 777777777777665 3 4555433
No 483
>PF12846 AAA_10: AAA-like domain
Probab=85.72 E-value=1.1 Score=45.37 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=29.8
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHH
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~ 201 (652)
+.++++.|+||||||.+....+.+.+..+ ..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g-------------~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG-------------PRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC-------------CCEEEEcCCchHHH
Confidence 46799999999999987764444444332 35788877766554
No 484
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=85.67 E-value=6.4 Score=40.45 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCceEEecCcchhhhhcC--cHHHHHHHHHhccCCCCceEEEEcccCChHH
Q 006272 260 SSLKFRVLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWV 308 (652)
Q Consensus 260 ~~~~~lViDEah~~l~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~ 308 (652)
..--+||+|-||.+-|++ ....+-.+-..++. +.-.++||+++++..
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~--~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNE--PTIVIILSAPSCEKQ 162 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC--CceEEEEeccccHHH
Confidence 445689999999998877 33344444444444 345678999987643
No 485
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=85.65 E-value=8.3 Score=38.66 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=24.6
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCC
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 305 (652)
-...+++|||+||.|... ....+.+++.. ++..-++++.++-+
T Consensus 93 e~~~kv~ii~~ad~mt~~-AaNaLLK~LEE---Pp~~~~fiL~~~~~ 135 (290)
T PRK05917 93 ESPYKIYIIHEADRMTLD-AISAFLKVLED---PPQHGVIILTSAKP 135 (290)
T ss_pred CCCceEEEEechhhcCHH-HHHHHHHHhhc---CCCCeEEEEEeCCh
Confidence 356799999999999632 24444444444 33333444444433
No 486
>PRK10436 hypothetical protein; Provisional
Probab=85.62 E-value=0.99 Score=48.57 Aligned_cols=46 Identities=28% Similarity=0.451 Sum_probs=30.4
Q ss_pred HHHHCCCCCChHHHHHHHHHHh--cCCcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 123 KLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 123 ~l~~~g~~~~~~~Q~~~i~~~l--~~~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
.|..+|+ .+.|.+.+..++ .+.-+++++|||||||++. ..++..+.
T Consensus 196 ~L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 196 DLETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred CHHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 3455553 456677776655 3446899999999999864 34555553
No 487
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.60 E-value=0.25 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=9.0
Q ss_pred EecCcchhhhhcCcHHHHHHHHH
Q 006272 265 RVLDEADEMLRMGFVEDVELILG 287 (652)
Q Consensus 265 lViDEah~~l~~gf~~~~~~i~~ 287 (652)
+|+||+-.++..--......++.
T Consensus 178 ~i~~~ikkvL~DVTaeEF~l~m~ 200 (556)
T PF05918_consen 178 FIVDEIKKVLQDVTAEEFELFMS 200 (556)
T ss_dssp HHHHHHHHHCTT--HHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHH
Confidence 44455554444333333333333
No 488
>PRK09165 replicative DNA helicase; Provisional
Probab=85.55 E-value=5.4 Score=43.64 Aligned_cols=125 Identities=13% Similarity=0.031 Sum_probs=57.4
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCC-c-ccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEe
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA-S-KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~-~-~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~ 222 (652)
.|.-+++.|+||+|||...+-.+.+......... + ..+....+..++|++. -.-..|+...+-... .++....+.
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~--s~v~~~~i~ 292 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQ--SEISSSKIR 292 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHh--cCCCHHHHh
Confidence 4456889999999999754443333322211000 0 0000011234666643 344556666554433 222222222
Q ss_pred CCcchHHHH-------HHhcCCCcEEEe-----CcHHHHHHHHhCCcCCCCceEEecCcchhhh
Q 006272 223 GGAPYHAQE-------FKLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (652)
Q Consensus 223 gg~~~~~~~-------~~~~~~~~Ilv~-----Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l 274 (652)
.+.-...+. ..+. ..++.|- |+..+...+.+-.. -..+++||||=.+.|.
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~-~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQ-KLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHh-cCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 222111111 1222 2345543 34455444433111 2358899999999775
No 489
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=85.32 E-value=2.6 Score=40.77 Aligned_cols=27 Identities=22% Similarity=0.100 Sum_probs=19.7
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESL 171 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l 171 (652)
.|+-+.+.+++|+|||...+..+...+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 356789999999999986555444443
No 490
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=85.30 E-value=1.4 Score=45.53 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=15.4
Q ss_pred CcEEEEccCCCCchhhhH
Q 006272 147 SDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~ 164 (652)
..+++.+|+|+|||....
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 579999999999998544
No 491
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=85.12 E-value=2.9 Score=48.57 Aligned_cols=18 Identities=33% Similarity=0.176 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchhhh
Q 006272 146 GSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~ 163 (652)
+..+++.+|+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999754
No 492
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=85.12 E-value=1.1 Score=46.66 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=19.8
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
.+.-+++++|||||||+.. -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 5677999999999999854 33444443
No 493
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=84.77 E-value=3.3 Score=36.83 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=24.4
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhc
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~ 289 (652)
+.+.+++++||.-.-+|......+..++..+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 4567899999999888877777777777665
No 494
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=84.76 E-value=7.6 Score=36.70 Aligned_cols=48 Identities=23% Similarity=0.136 Sum_probs=32.2
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCC-CCceEEEEcccCCh
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA-NKVQTLLFSATLPS 306 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~-~~~q~l~~SAT~~~ 306 (652)
+.+.+++++||...-+|......+..++..+... ...+++++|.--..
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~ 177 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS 177 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc
Confidence 4678899999999988887777776666554321 13457777654333
No 495
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=84.67 E-value=3.6 Score=38.11 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=0.0
Q ss_pred HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEe
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~ 222 (652)
+..|.-+.+.+++|+|||+ ++-++.-+..... .=|...-..+... ...++....+..-....+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSt--Ll~~l~G~~~~~~-------------G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~ 88 (178)
T cd03247 25 LKQGEKIALLGRSGSGKST--LLQLLTGDLKPQQ-------------GEITLDGVPVSDL-EKALSSLISVLNQRPYLFD 88 (178)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhccCCCCC-------------CEEEECCEEHHHH-HHHHHhhEEEEccCCeeec
Q ss_pred CCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEc
Q 006272 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301 (652)
Q Consensus 223 gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~S 301 (652)
. +..... +---+.|.......-..+ +.+.+++++||.-.-+|......+..++..+.. ..-+++.|
T Consensus 89 ~--tv~~~i--------~~~LS~G~~qrv~laral-~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~s 154 (178)
T cd03247 89 T--TLRNNL--------GRRFSGGERQRLALARIL-LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK--DKTLIWIT 154 (178)
T ss_pred c--cHHHhh--------cccCCHHHHHHHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEe
No 496
>PHA00012 I assembly protein
Probab=84.65 E-value=7.7 Score=39.23 Aligned_cols=115 Identities=18% Similarity=0.126 Sum_probs=0.0
Q ss_pred EEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHH
Q 006272 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229 (652)
Q Consensus 150 l~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 229 (652)
++.+..|||||+....-|+..+..+ ..|++...-.. +.+...+....-.-..-.-+.+.-.
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~G---------------r~VaTNidL~l----e~~p~~g~~a~~~~~iripDkP~~~ 65 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKG---------------CIVATNLNLRL----HHLPQVGRFAKQPRVMRIPDKPTLE 65 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcC---------------CEEEeCCccch----hhccccCccccCcceEeccCCCcHH
Q ss_pred HHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCc------HHHHHHHHHhccCCCCceEEEEc
Q 006272 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF------VEDVELILGKVEDANKVQTLLFS 301 (652)
Q Consensus 230 ~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf------~~~~~~i~~~~~~~~~~q~l~~S 301 (652)
....+..+.+ .++...-.++|+||||..+..-- ...++.+...-.. ..-++++|
T Consensus 66 dl~~~G~~n~----------------~ydep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~--G~DvilIT 125 (361)
T PHA00012 66 DLEAIGRGNL----------------SYDESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKL--GWDIIFII 125 (361)
T ss_pred HHHhhccccc----------------cCCCCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccC--CceEEEEc
No 497
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.46 E-value=5 Score=46.47 Aligned_cols=97 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccH-------HHHHHHHHHHHHHhcCCCceE
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR-------ELAKQVHEDFDVYGGAVGLTS 218 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr-------eLa~q~~~~~~~~~~~~~~~~ 218 (652)
.+.+++.+|+|+|||+ ++-++....... .+.+.... +....+...|.......
T Consensus 212 ~~giLL~GppGtGKT~--laraia~~~~~~--------------~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~---- 271 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTL--LAKAVANEAGAY--------------FISINGPEIMSKYYGESEERLREIFKEAEENA---- 271 (733)
T ss_pred CceEEEECCCCCChHH--HHHHHHHHhCCe--------------EEEEecHHHhcccccHHHHHHHHHHHHHHhcC----
Q ss_pred EEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhh----------hcCcHHHHHHHHHh
Q 006272 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML----------RMGFVEDVELILGK 288 (652)
Q Consensus 219 ~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l----------~~gf~~~~~~i~~~ 288 (652)
..+|+|||+|.+. +......+..++..
T Consensus 272 -------------------------------------------p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~ 308 (733)
T TIGR01243 272 -------------------------------------------PSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDG 308 (733)
T ss_pred -------------------------------------------CcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhc
Q ss_pred ccCCCCceEEEEcccCChH
Q 006272 289 VEDANKVQTLLFSATLPSW 307 (652)
Q Consensus 289 ~~~~~~~q~l~~SAT~~~~ 307 (652)
+.. ...++++.||-.++
T Consensus 309 l~~--~~~vivI~atn~~~ 325 (733)
T TIGR01243 309 LKG--RGRVIVIGATNRPD 325 (733)
T ss_pred ccc--CCCEEEEeecCChh
No 498
>PRK09354 recA recombinase A; Provisional
Probab=84.40 E-value=1.5 Score=45.08 Aligned_cols=87 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEe
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY 222 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~ 222 (652)
+-.|+-+.+.+|+|||||...+..+.+....+.. ++++..-..+-...++.+---.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~-------------~~yId~E~s~~~~~a~~lGvdl----------- 112 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGT-------------AAFIDAEHALDPVYAKKLGVDI----------- 112 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCc-------------EEEECCccchHHHHHHHcCCCH-----------
Q ss_pred CCcchHHHHHHhcCCCcEEEeCcHHHHHHHHh--CCcCCCCceEEecC
Q 006272 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER--GNIDLSSLKFRVLD 268 (652)
Q Consensus 223 gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~--~~~~l~~~~~lViD 268 (652)
-++++..|...-+++.. ..+.-..+++||||
T Consensus 113 ---------------d~lli~qp~~~Eq~l~i~~~li~s~~~~lIVID 145 (349)
T PRK09354 113 ---------------DNLLVSQPDTGEQALEIADTLVRSGAVDLIVVD 145 (349)
T ss_pred ---------------HHeEEecCCCHHHHHHHHHHHhhcCCCCEEEEe
No 499
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=84.39 E-value=1.8 Score=45.00 Aligned_cols=107 Identities=18% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceE
Q 006272 139 TFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218 (652)
Q Consensus 139 ~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~ 218 (652)
++-.+-.|+..++.||.|+|||....- +.+.+....... .++++-..+-...+.+..+.+.. .+
T Consensus 162 ~l~PIGkGQR~lIvgppGvGKTTLaK~-Ian~I~~nhFDv-----------~~~VvLIgER~~EVtdiqrsIlg----~v 225 (416)
T PRK09376 162 LIAPIGKGQRGLIVAPPKAGKTVLLQN-IANSITTNHPEV-----------HLIVLLIDERPEEVTDMQRSVKG----EV 225 (416)
T ss_pred eecccccCceEEEeCCCCCChhHHHHH-HHHHHHhhcCCe-----------EEEEEEeCCchhHHHHHHHHhcC----cE
Q ss_pred EEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhh
Q 006272 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (652)
Q Consensus 219 ~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~ 273 (652)
+.-+-+.+...+... +..++.-.+++.+ ...=-+|++||.|++
T Consensus 226 v~st~d~~~~~~~~~----a~~~ie~Ae~~~e--------~G~dVlL~iDsItR~ 268 (416)
T PRK09376 226 VASTFDEPAERHVQV----AEMVIEKAKRLVE--------HGKDVVILLDSITRL 268 (416)
T ss_pred EEECCCCCHHHHHHH----HHHHHHHHHHHHH--------cCCCEEEEEEChHHH
No 500
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=84.37 E-value=3.2 Score=37.52 Aligned_cols=73 Identities=19% Similarity=0.160 Sum_probs=0.0
Q ss_pred hhhccccEEeecCC---CceeeecCh-hhHHHHHhhcc----CCCceeeeeccCCCcchhhcccCCCCCCCCCCCCCCCC
Q 006272 545 KVELVKGMALTADG---NGAVFDVPV-ADLDLFRSGAD----NAANVSLEVLKQLPPLQEREQSRGRFGGGGRGGFGGRG 616 (652)
Q Consensus 545 ~~~~I~~i~~~~d~---~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~ 616 (652)
+...|..|++.... .|+||++.. .+|+.++..-. ++-.+.++++ .+++.+..++++..+
T Consensus 29 Kyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp-------------rggr~s~~~~G~y~g 95 (241)
T KOG0105|consen 29 KYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP-------------RGGRSSSDRRGSYSG 95 (241)
T ss_pred hhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec-------------cCCCcccccccccCC
Q ss_pred CCCCCCCCCCCCCC
Q 006272 617 GNRFSGGRGGGFSD 630 (652)
Q Consensus 617 ~~~~~~~~~g~~~~ 630 (652)
++++++++++.+++
T Consensus 96 ggrgGgg~gg~rgp 109 (241)
T KOG0105|consen 96 GGRGGGGGGGRRGP 109 (241)
T ss_pred CCCCCCCCCcccCC
Done!