Query 006272
Match_columns 652
No_of_seqs 546 out of 4549
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 20:34:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006272.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006272hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.2E-61 4.2E-66 520.2 42.4 365 107-482 54-422 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 6.6E-57 2.3E-61 482.9 40.8 368 106-477 12-393 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 4.6E-56 1.6E-60 475.3 36.5 350 107-473 35-389 (410)
4 3fmp_B ATP-dependent RNA helic 100.0 1.3E-56 4.4E-61 488.8 21.8 353 108-480 91-459 (479)
5 1s2m_A Putative ATP-dependent 100.0 7.8E-54 2.7E-58 456.5 39.3 349 107-473 19-371 (400)
6 3sqw_A ATP-dependent RNA helic 100.0 7.9E-55 2.7E-59 484.8 32.6 361 106-474 14-405 (579)
7 1xti_A Probable ATP-dependent 100.0 7.6E-54 2.6E-58 455.1 38.4 356 108-479 7-369 (391)
8 3eiq_A Eukaryotic initiation f 100.0 3.6E-54 1.2E-58 461.2 36.2 358 106-481 37-400 (414)
9 3i5x_A ATP-dependent RNA helic 100.0 5.2E-54 1.8E-58 478.1 32.8 358 109-474 68-456 (563)
10 3fht_A ATP-dependent RNA helic 100.0 5.5E-53 1.9E-57 451.7 37.8 356 106-481 22-393 (412)
11 3pey_A ATP-dependent RNA helic 100.0 9.2E-53 3.2E-57 447.2 37.9 353 108-481 4-370 (395)
12 1hv8_A Putative ATP-dependent 100.0 6.7E-52 2.3E-56 436.0 39.2 342 108-473 5-351 (367)
13 1fuu_A Yeast initiation factor 100.0 3.1E-53 1E-57 450.9 23.5 344 108-469 20-368 (394)
14 2z0m_A 337AA long hypothetical 100.0 1.9E-51 6.7E-56 427.3 36.5 321 116-464 1-321 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 3.3E-51 1.1E-55 451.5 30.5 336 108-471 20-378 (591)
16 3l9o_A ATP-dependent RNA helic 100.0 8.6E-51 2.9E-55 475.3 29.2 329 107-466 160-597 (1108)
17 1oyw_A RECQ helicase, ATP-depe 100.0 4.3E-50 1.5E-54 438.5 27.3 340 109-476 2-352 (523)
18 3oiy_A Reverse gyrase helicase 100.0 7.2E-49 2.4E-53 419.8 28.0 310 119-463 9-362 (414)
19 3fho_A ATP-dependent RNA helic 100.0 9.1E-50 3.1E-54 436.1 19.5 351 110-481 120-484 (508)
20 1tf5_A Preprotein translocase 100.0 3.2E-48 1.1E-52 426.4 25.1 323 126-468 79-547 (844)
21 2va8_A SSO2462, SKI2-type heli 100.0 2.5E-45 8.6E-50 418.7 31.4 336 108-466 7-408 (715)
22 4a2p_A RIG-I, retinoic acid in 100.0 8.5E-46 2.9E-50 411.8 26.7 325 128-465 4-507 (556)
23 4ddu_A Reverse gyrase; topoiso 100.0 1.8E-45 6.3E-50 430.2 28.9 278 126-438 74-388 (1104)
24 2zj8_A DNA helicase, putative 100.0 7.1E-46 2.4E-50 423.0 24.4 330 110-466 2-387 (720)
25 2fsf_A Preprotein translocase 100.0 1.8E-45 6.3E-50 403.2 24.4 319 127-467 71-584 (853)
26 2p6r_A Afuhel308 helicase; pro 100.0 8.4E-46 2.9E-50 421.2 22.0 331 110-467 2-388 (702)
27 3tbk_A RIG-I helicase domain; 100.0 9.8E-45 3.3E-49 403.2 27.4 327 131-468 4-508 (555)
28 2ykg_A Probable ATP-dependent 100.0 1.9E-45 6.4E-50 419.7 20.0 338 121-469 3-518 (696)
29 2xgj_A ATP-dependent RNA helic 100.0 1.2E-43 4.2E-48 411.4 34.9 308 125-464 81-497 (1010)
30 1nkt_A Preprotein translocase 100.0 3.4E-44 1.1E-48 393.4 26.8 322 126-467 107-618 (922)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 9.1E-45 3.1E-49 425.0 23.6 277 125-437 52-352 (1054)
32 4a2q_A RIG-I, retinoic acid in 100.0 3.6E-44 1.2E-48 412.8 27.0 328 126-467 243-749 (797)
33 4a4z_A Antiviral helicase SKI2 100.0 7.7E-43 2.6E-47 404.9 27.7 301 127-457 36-481 (997)
34 4a2w_A RIG-I, retinoic acid in 100.0 3.2E-43 1.1E-47 408.8 23.9 332 124-466 241-748 (936)
35 4gl2_A Interferon-induced heli 100.0 2.8E-43 9.5E-48 402.0 16.6 316 131-454 7-509 (699)
36 1wp9_A ATP-dependent RNA helic 100.0 1.8E-41 6E-46 370.4 29.5 319 131-466 9-475 (494)
37 4f92_B U5 small nuclear ribonu 100.0 3.4E-41 1.2E-45 407.4 30.3 341 116-475 911-1316(1724)
38 1gm5_A RECG; helicase, replica 100.0 2.8E-41 9.5E-46 379.7 23.1 314 118-464 356-695 (780)
39 4f92_B U5 small nuclear ribonu 100.0 5E-41 1.7E-45 405.9 25.5 338 128-475 76-481 (1724)
40 2eyq_A TRCF, transcription-rep 100.0 2E-39 6.9E-44 381.8 35.0 319 114-466 586-922 (1151)
41 2jlq_A Serine protease subunit 100.0 3.6E-41 1.2E-45 362.1 18.0 282 128-463 1-308 (451)
42 2whx_A Serine protease/ntpase/ 100.0 1.1E-41 3.6E-46 376.7 12.8 297 114-465 155-476 (618)
43 3o8b_A HCV NS3 protease/helica 100.0 6.2E-40 2.1E-44 358.5 18.4 295 131-489 217-543 (666)
44 2wv9_A Flavivirin protease NS2 100.0 1.7E-41 5.9E-46 377.1 4.7 288 123-463 202-530 (673)
45 2xau_A PRE-mRNA-splicing facto 100.0 8.9E-39 3E-43 362.1 26.9 325 108-463 71-440 (773)
46 2fwr_A DNA repair protein RAD2 100.0 1.6E-39 5.3E-44 353.4 18.4 284 131-456 93-441 (472)
47 2oca_A DAR protein, ATP-depend 100.0 2.7E-39 9.2E-44 355.1 20.4 304 129-457 111-446 (510)
48 1yks_A Genome polyprotein [con 100.0 1.1E-40 3.6E-45 356.7 7.8 270 142-472 4-307 (440)
49 3fmo_B ATP-dependent RNA helic 100.0 2.5E-38 8.7E-43 320.9 23.2 203 107-325 90-297 (300)
50 3fe2_A Probable ATP-dependent 100.0 2.2E-37 7.7E-42 305.2 25.9 213 106-326 26-238 (242)
51 2z83_A Helicase/nucleoside tri 100.0 9E-38 3.1E-42 336.1 20.2 268 140-465 15-312 (459)
52 2v6i_A RNA helicase; membrane, 100.0 5.4E-37 1.8E-41 327.4 21.2 267 145-464 1-288 (431)
53 3iuy_A Probable ATP-dependent 100.0 4.1E-36 1.4E-40 293.5 23.8 210 106-323 16-226 (228)
54 3ber_A Probable ATP-dependent 100.0 4.5E-36 1.5E-40 296.5 23.6 204 108-324 42-246 (249)
55 1wrb_A DJVLGB; RNA helicase, D 100.0 8E-36 2.7E-40 296.3 23.4 218 107-326 21-240 (253)
56 1vec_A ATP-dependent RNA helic 100.0 2.3E-35 7.9E-40 283.5 25.9 197 109-317 3-200 (206)
57 3ly5_A ATP-dependent RNA helic 100.0 9.4E-36 3.2E-40 296.6 23.2 205 109-321 52-259 (262)
58 1q0u_A Bstdead; DEAD protein, 100.0 7.7E-36 2.6E-40 289.6 20.9 204 109-325 4-211 (219)
59 3rc3_A ATP-dependent RNA helic 100.0 2.1E-36 7.2E-41 335.1 19.1 282 141-475 150-452 (677)
60 3bor_A Human initiation factor 100.0 1.2E-35 4E-40 291.8 22.2 205 107-324 28-233 (237)
61 3h1t_A Type I site-specific re 100.0 2.3E-36 7.8E-41 337.3 19.0 304 131-455 178-545 (590)
62 2oxc_A Probable ATP-dependent 100.0 3.3E-35 1.1E-39 287.3 23.9 204 107-324 22-227 (230)
63 2pl3_A Probable ATP-dependent 100.0 6.7E-35 2.3E-39 286.5 25.7 208 108-325 24-232 (236)
64 1qde_A EIF4A, translation init 100.0 8.7E-35 3E-39 283.4 24.5 204 108-325 13-216 (224)
65 2gxq_A Heat resistant RNA depe 100.0 1.5E-34 5E-39 278.2 25.2 203 110-324 2-204 (207)
66 1t6n_A Probable ATP-dependent 100.0 2.9E-34 9.9E-39 278.8 23.0 206 105-323 10-218 (220)
67 3dkp_A Probable ATP-dependent 100.0 7.4E-34 2.5E-38 280.7 21.9 207 109-326 25-241 (245)
68 3i32_A Heat resistant RNA depe 100.0 2.3E-33 7.9E-38 281.9 19.2 244 336-600 2-293 (300)
69 3jux_A Protein translocase sub 100.0 3.1E-32 1.1E-36 292.4 28.4 315 127-467 72-588 (822)
70 3dmq_A RNA polymerase-associat 100.0 4.4E-33 1.5E-37 324.0 22.4 315 130-462 152-609 (968)
71 1z63_A Helicase of the SNF2/RA 100.0 1.2E-31 4.1E-36 293.5 24.6 303 130-461 36-446 (500)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 6.2E-31 2.1E-35 303.2 23.8 301 130-455 270-694 (1038)
73 1z3i_X Similar to RAD54-like; 100.0 3E-28 1E-32 272.6 33.1 316 131-461 55-521 (644)
74 3mwy_W Chromo domain-containin 100.0 2.1E-28 7E-33 280.8 27.4 311 131-461 236-677 (800)
75 2ipc_A Preprotein translocase 100.0 1.7E-27 6E-32 260.2 30.5 131 126-274 75-215 (997)
76 1c4o_A DNA nucleotide excision 100.0 5.3E-27 1.8E-31 262.0 28.9 190 294-502 380-578 (664)
77 2d7d_A Uvrabc system protein B 99.9 1.6E-25 5.4E-30 250.0 28.8 190 294-502 386-584 (661)
78 1t5i_A C_terminal domain of A 99.9 3.6E-25 1.2E-29 205.1 13.5 145 334-480 3-151 (172)
79 2hjv_A ATP-dependent RNA helic 99.9 1.2E-24 4.1E-29 199.9 15.5 140 332-473 5-148 (163)
80 2p6n_A ATP-dependent RNA helic 99.9 1E-24 3.4E-29 205.2 13.7 164 313-482 9-176 (191)
81 2rb4_A ATP-dependent RNA helic 99.9 2.2E-24 7.5E-29 200.7 14.6 138 333-472 4-152 (175)
82 3b6e_A Interferon-induced heli 99.9 9.9E-25 3.4E-29 210.8 10.6 169 127-303 29-216 (216)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 3.1E-24 1.1E-28 201.0 13.2 148 332-481 15-166 (185)
84 3eaq_A Heat resistant RNA depe 99.9 7.1E-24 2.4E-28 203.3 14.9 135 336-472 5-143 (212)
85 3llm_A ATP-dependent RNA helic 99.9 2.7E-23 9.2E-28 203.2 16.6 178 117-316 47-227 (235)
86 1fuk_A Eukaryotic initiation f 99.9 5.9E-24 2E-28 195.8 10.8 136 336-473 3-143 (165)
87 2vl7_A XPD; helicase, unknown 99.9 1.9E-22 6.5E-27 220.9 21.4 302 127-466 4-520 (540)
88 2yjt_D ATP-dependent RNA helic 99.8 5.7E-24 1.9E-28 196.9 0.0 127 336-463 3-134 (170)
89 1rif_A DAR protein, DNA helica 99.9 3.6E-22 1.2E-26 201.0 10.8 155 130-308 112-266 (282)
90 3crv_A XPD/RAD3 related DNA he 99.9 5.2E-20 1.8E-24 202.4 27.8 129 131-275 3-187 (551)
91 2fz4_A DNA repair protein RAD2 99.8 6.8E-19 2.3E-23 171.6 14.4 139 130-307 92-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.7 2E-16 6.9E-21 175.1 23.9 83 131-225 3-89 (620)
93 1z5z_A Helicase of the SNF2/RA 99.7 4.8E-17 1.6E-21 161.2 9.3 117 345-461 93-217 (271)
94 2e29_A ATP-dependent RNA helic 99.2 2E-11 6.9E-16 96.8 8.4 90 498-588 2-91 (92)
95 1w36_D RECD, exodeoxyribonucle 99.0 8.3E-10 2.9E-14 122.0 8.5 144 133-302 151-297 (608)
96 3upu_A ATP-dependent DNA helic 98.2 3.2E-05 1.1E-09 82.6 18.7 73 123-207 17-94 (459)
97 4b3f_X DNA-binding protein smu 98.1 5.5E-06 1.9E-10 92.5 9.5 67 131-210 189-256 (646)
98 3e1s_A Exodeoxyribonuclease V, 98.1 1.5E-05 5.1E-10 87.1 12.4 124 131-300 189-312 (574)
99 2gk6_A Regulator of nonsense t 98.0 3.2E-05 1.1E-09 85.8 13.0 70 129-210 178-247 (624)
100 2xzl_A ATP-dependent helicase 98.0 6.6E-05 2.2E-09 85.2 14.8 69 130-210 359-427 (802)
101 2wjy_A Regulator of nonsense t 97.8 7.5E-05 2.6E-09 84.6 12.3 68 131-210 356-423 (800)
102 3lfu_A DNA helicase II; SF1 he 97.7 0.00061 2.1E-08 76.1 17.8 72 130-212 8-79 (647)
103 2g0c_A ATP-dependent RNA helic 97.4 0.00024 8.1E-09 54.7 6.1 69 517-588 1-74 (76)
104 2o0j_A Terminase, DNA packagin 97.3 0.0023 7.9E-08 65.6 13.5 71 131-212 163-233 (385)
105 3cpe_A Terminase, DNA packagin 97.1 0.0047 1.6E-07 67.8 13.8 132 131-290 163-300 (592)
106 3ec2_A DNA replication protein 96.9 0.0048 1.6E-07 56.3 10.1 20 145-164 37-56 (180)
107 3hgt_A HDA1 complex subunit 3; 96.7 0.011 3.7E-07 58.6 11.7 130 346-480 107-250 (328)
108 2orw_A Thymidine kinase; TMTK, 96.6 0.0016 5.4E-08 59.8 4.9 40 145-197 2-41 (184)
109 3vkw_A Replicase large subunit 96.5 0.007 2.4E-07 62.9 9.4 87 148-277 163-249 (446)
110 1xx6_A Thymidine kinase; NESG, 96.5 0.0061 2.1E-07 56.1 7.6 39 146-197 8-46 (191)
111 1pjr_A PCRA; DNA repair, DNA r 96.4 0.0075 2.6E-07 68.0 9.5 71 130-211 10-80 (724)
112 2b8t_A Thymidine kinase; deoxy 96.4 0.0062 2.1E-07 57.4 7.5 91 145-273 11-101 (223)
113 1uaa_A REP helicase, protein ( 96.4 0.0034 1.2E-07 70.3 6.6 70 131-211 2-71 (673)
114 3i31_A Heat resistant RNA depe 96.2 0.011 3.9E-07 44.3 6.0 78 505-598 2-79 (88)
115 2zpa_A Uncharacterized protein 96.1 0.0067 2.3E-07 66.2 6.8 113 131-305 175-289 (671)
116 1l8q_A Chromosomal replication 95.9 0.038 1.3E-06 55.5 11.2 19 146-164 37-55 (324)
117 3q2s_C Cleavage and polyadenyl 95.8 0.0024 8E-08 60.9 1.4 71 515-589 67-148 (229)
118 2j9r_A Thymidine kinase; TK1, 95.8 0.015 5.2E-07 54.0 6.6 40 146-198 28-67 (214)
119 3e2i_A Thymidine kinase; Zn-bi 95.7 0.032 1.1E-06 51.7 8.5 99 145-286 27-125 (219)
120 3te6_A Regulatory protein SIR3 95.7 0.072 2.5E-06 53.0 11.6 27 145-172 44-70 (318)
121 1a5t_A Delta prime, HOLB; zinc 95.7 0.021 7.3E-07 57.7 8.0 40 132-172 3-49 (334)
122 2kjq_A DNAA-related protein; s 95.4 0.012 4.2E-07 51.7 4.4 19 145-163 35-53 (149)
123 1d2n_A N-ethylmaleimide-sensit 95.4 0.072 2.5E-06 51.9 10.4 18 147-164 65-82 (272)
124 3bos_A Putative DNA replicatio 95.3 0.022 7.5E-07 54.2 6.3 20 145-164 51-70 (242)
125 1w4r_A Thymidine kinase; type 95.3 0.029 9.9E-07 51.2 6.5 39 145-196 19-57 (195)
126 3u4q_A ATP-dependent helicase/ 95.2 0.026 8.8E-07 67.6 7.7 71 131-210 10-80 (1232)
127 3kl4_A SRP54, signal recogniti 95.2 0.066 2.3E-06 55.7 9.6 56 259-316 177-235 (433)
128 1h2v_Z 20 kDa nuclear CAP bind 95.1 0.056 1.9E-06 47.7 7.7 70 515-590 38-118 (156)
129 2orv_A Thymidine kinase; TP4A 95.0 0.084 2.9E-06 49.5 8.9 40 145-197 18-57 (234)
130 3pgw_S U1-70K; protein-RNA com 94.7 0.069 2.4E-06 55.9 8.5 71 515-591 101-182 (437)
131 2v1u_A Cell division control p 94.7 0.067 2.3E-06 55.0 8.4 30 261-290 130-160 (387)
132 2w58_A DNAI, primosome compone 94.6 0.2 6.7E-06 46.2 10.7 25 147-172 55-79 (202)
133 2z4s_A Chromosomal replication 94.5 0.14 4.8E-06 53.8 10.4 40 261-301 194-234 (440)
134 2chg_A Replication factor C sm 94.5 0.43 1.5E-05 44.1 13.0 17 147-163 39-55 (226)
135 2qby_B CDC6 homolog 3, cell di 94.3 0.13 4.4E-06 52.9 9.4 18 146-163 45-62 (384)
136 3u61_B DNA polymerase accessor 94.1 0.14 4.6E-06 51.4 8.9 41 260-303 104-144 (324)
137 1jbk_A CLPB protein; beta barr 93.9 0.76 2.6E-05 41.2 13.0 18 146-163 43-60 (195)
138 3syl_A Protein CBBX; photosynt 93.9 0.08 2.7E-06 52.6 6.7 19 146-164 67-85 (309)
139 3h4m_A Proteasome-activating n 93.9 0.2 6.8E-06 49.0 9.5 53 108-163 13-68 (285)
140 1sxj_E Activator 1 40 kDa subu 93.8 0.31 1.1E-05 49.3 11.0 41 259-302 132-172 (354)
141 3vfd_A Spastin; ATPase, microt 93.7 0.39 1.3E-05 49.4 11.6 19 146-164 148-166 (389)
142 2p65_A Hypothetical protein PF 93.7 0.32 1.1E-05 43.7 9.9 19 146-164 43-61 (187)
143 3pfi_A Holliday junction ATP-d 93.5 0.37 1.3E-05 48.4 11.0 47 106-164 23-73 (338)
144 2w0m_A SSO2452; RECA, SSPF, un 93.5 0.13 4.4E-06 48.5 7.0 21 145-165 22-42 (235)
145 2gno_A DNA polymerase III, gam 93.5 0.2 7E-06 49.6 8.6 43 259-305 80-122 (305)
146 2qgz_A Helicase loader, putati 93.5 0.13 4.6E-06 51.0 7.3 19 146-164 152-170 (308)
147 3dm5_A SRP54, signal recogniti 93.4 0.51 1.7E-05 49.0 11.6 132 147-316 101-236 (443)
148 2qby_A CDC6 homolog 1, cell di 92.9 0.2 6.9E-06 51.2 8.0 19 146-164 45-63 (386)
149 1fnn_A CDC6P, cell division co 92.8 0.19 6.4E-06 51.6 7.6 17 148-164 46-62 (389)
150 1njg_A DNA polymerase III subu 92.6 0.87 3E-05 42.6 11.6 16 148-163 47-62 (250)
151 2dgu_A Heterogeneous nuclear r 92.3 0.59 2E-05 37.6 8.5 70 514-591 9-83 (103)
152 1gm5_A RECG; helicase, replica 92.2 0.22 7.5E-06 56.1 7.5 82 354-435 408-498 (780)
153 1iqp_A RFCS; clamp loader, ext 92.1 0.46 1.6E-05 47.3 9.2 17 148-164 48-64 (327)
154 2dr3_A UPF0273 protein PH0284; 92.1 0.36 1.2E-05 45.9 8.0 51 145-209 22-72 (247)
155 1g5t_A COB(I)alamin adenosyltr 91.8 1.7 5.9E-05 39.5 11.7 141 146-312 28-171 (196)
156 2hjv_A ATP-dependent RNA helic 91.7 1.4 4.9E-05 38.7 11.1 72 189-270 37-112 (163)
157 1jr3_A DNA polymerase III subu 91.6 1.5 5.2E-05 44.4 12.6 17 148-164 40-56 (373)
158 1hqc_A RUVB; extended AAA-ATPa 91.3 1.4 4.7E-05 43.7 11.8 18 146-163 38-55 (324)
159 1fuk_A Eukaryotic initiation f 91.3 1.6 5.4E-05 38.5 10.9 71 189-269 32-106 (165)
160 3eie_A Vacuolar protein sortin 91.2 0.55 1.9E-05 46.9 8.6 51 108-164 14-69 (322)
161 3uk6_A RUVB-like 2; hexameric 91.0 0.93 3.2E-05 46.0 10.3 19 146-164 70-88 (368)
162 3d8b_A Fidgetin-like protein 1 90.8 0.57 1.9E-05 47.6 8.3 20 145-164 116-135 (357)
163 2p6n_A ATP-dependent RNA helic 90.8 1.2 4.2E-05 40.4 9.8 71 189-269 56-130 (191)
164 1sxj_A Activator 1 95 kDa subu 90.6 0.49 1.7E-05 50.7 8.0 41 260-304 147-189 (516)
165 3cf0_A Transitional endoplasmi 90.4 0.6 2E-05 46.1 7.9 56 108-164 11-67 (301)
166 1sxj_D Activator 1 41 kDa subu 90.2 1.3 4.5E-05 44.5 10.5 17 147-163 59-75 (353)
167 1cr0_A DNA primase/helicase; R 90.2 0.21 7.2E-06 49.3 4.3 24 143-166 32-55 (296)
168 2qz4_A Paraplegin; AAA+, SPG7, 90.1 0.94 3.2E-05 43.3 8.9 19 146-164 39-57 (262)
169 3lda_A DNA repair protein RAD5 90.0 2.7 9.2E-05 43.1 12.6 23 146-168 178-200 (400)
170 2ehv_A Hypothetical protein PH 89.7 0.29 9.9E-06 46.6 4.8 42 260-303 134-180 (251)
171 3eaq_A Heat resistant RNA depe 89.6 2.3 7.9E-05 39.3 10.8 69 189-267 33-105 (212)
172 2qp9_X Vacuolar protein sortin 89.4 0.41 1.4E-05 48.6 5.8 19 146-164 84-102 (355)
173 2rb4_A ATP-dependent RNA helic 89.3 1.2 4E-05 39.9 8.3 69 189-267 36-108 (175)
174 2q6t_A DNAB replication FORK h 89.3 0.66 2.3E-05 48.7 7.5 27 145-171 199-225 (444)
175 4a1f_A DNAB helicase, replicat 89.2 0.23 8E-06 49.8 3.7 51 143-207 43-93 (338)
176 2r6a_A DNAB helicase, replicat 89.1 0.38 1.3E-05 50.7 5.5 29 143-171 200-228 (454)
177 2chq_A Replication factor C sm 88.7 1.1 3.8E-05 44.2 8.4 16 148-163 40-55 (319)
178 1t5i_A C_terminal domain of A 88.6 1.7 5.7E-05 38.7 8.8 71 189-269 33-107 (172)
179 3pvs_A Replication-associated 88.4 0.34 1.2E-05 50.9 4.5 18 147-164 51-68 (447)
180 2l8b_A Protein TRAI, DNA helic 88.4 0.38 1.3E-05 43.0 4.0 121 133-303 36-158 (189)
181 3hjh_A Transcription-repair-co 88.0 2.2 7.6E-05 44.9 10.5 52 145-212 13-64 (483)
182 1sxj_C Activator 1 40 kDa subu 88.0 1.3 4.4E-05 44.5 8.5 41 260-304 109-149 (340)
183 3ex7_B RNA-binding protein 8A; 87.8 1.4 4.9E-05 36.7 7.4 70 515-590 21-101 (126)
184 1sxj_B Activator 1 37 kDa subu 87.6 0.87 3E-05 45.1 6.9 17 148-164 44-60 (323)
185 1n0w_A DNA repair protein RAD5 87.5 1.6 5.4E-05 41.1 8.3 24 145-168 23-46 (243)
186 3hu3_A Transitional endoplasmi 86.8 1.5 5.1E-05 46.5 8.4 20 145-164 237-256 (489)
187 2zan_A Vacuolar protein sortin 86.6 1.4 4.9E-05 46.0 8.0 54 108-164 130-185 (444)
188 1nlf_A Regulatory protein REPA 86.5 1.5 5.2E-05 42.5 7.7 26 142-167 26-51 (279)
189 2jgn_A DBX, DDX3, ATP-dependen 86.4 2.1 7.1E-05 38.6 8.1 69 189-267 48-120 (185)
190 1w5s_A Origin recognition comp 86.3 2.6 8.7E-05 43.3 9.8 18 147-164 51-70 (412)
191 2d7d_A Uvrabc system protein B 86.1 9.3 0.00032 42.1 14.6 76 188-273 446-525 (661)
192 1u6f_A Tcubp1, RNA-binding pro 86.0 3 0.0001 35.4 8.5 70 514-589 40-120 (139)
193 2eyq_A TRCF, transcription-rep 85.9 1.5 5.1E-05 51.8 8.5 76 358-433 647-731 (1151)
194 2z43_A DNA repair and recombin 85.6 1.9 6.5E-05 43.0 8.0 25 145-169 106-130 (324)
195 3co5_A Putative two-component 85.6 0.5 1.7E-05 40.7 3.3 22 142-163 23-44 (143)
196 3n70_A Transport activator; si 85.2 0.55 1.9E-05 40.5 3.4 22 143-164 21-42 (145)
197 2pk2_A Cyclin-T1, protein TAT; 85.2 0.17 5.8E-06 51.3 0.0 12 439-450 152-163 (358)
198 1c4o_A DNA nucleotide excision 84.9 10 0.00034 41.9 14.1 76 188-273 440-519 (664)
199 3bh0_A DNAB-like replicative h 84.8 1.7 5.9E-05 43.1 7.2 53 143-209 65-117 (315)
200 2zts_A Putative uncharacterize 84.7 0.67 2.3E-05 44.0 4.1 52 145-209 29-80 (251)
201 2fy1_A RNA-binding motif prote 84.7 6.7 0.00023 32.1 9.8 68 516-589 7-84 (116)
202 3i32_A Heat resistant RNA depe 84.7 4.1 0.00014 39.9 9.8 70 189-268 30-103 (300)
203 2cqd_A RNA-binding region cont 84.2 2.7 9.4E-05 34.3 7.2 70 514-589 15-94 (116)
204 4b4t_K 26S protease regulatory 83.1 4.5 0.00015 41.8 9.7 18 146-163 206-223 (428)
205 2i4i_A ATP-dependent RNA helic 82.9 4.8 0.00016 41.2 10.1 71 187-267 276-350 (417)
206 4ddu_A Reverse gyrase; topoiso 82.9 1.3 4.5E-05 52.0 6.2 79 356-435 114-204 (1104)
207 1x4c_A Splicing factor, argini 82.7 4.5 0.00015 32.6 7.8 68 516-590 15-92 (108)
208 2fna_A Conserved hypothetical 82.7 28 0.00095 34.3 15.6 42 245-289 124-168 (357)
209 1xp8_A RECA protein, recombina 82.3 1.3 4.6E-05 44.8 5.2 26 145-170 73-98 (366)
210 3oiy_A Reverse gyrase helicase 81.8 1.8 6.3E-05 44.6 6.3 77 357-433 58-145 (414)
211 1vma_A Cell division protein F 81.3 7.6 0.00026 38.1 10.2 19 146-164 104-122 (306)
212 3cmu_A Protein RECA, recombina 81.3 1.6 5.6E-05 53.7 6.3 28 146-173 1427-1454(2050)
213 1ls1_A Signal recognition part 80.7 10 0.00035 37.0 10.9 20 145-164 97-116 (295)
214 3pxi_A Negative regulator of g 80.7 1.6 5.4E-05 49.2 5.7 17 148-164 523-539 (758)
215 1x4g_A Nucleolysin TIAR; struc 80.5 5.3 0.00018 32.1 7.5 73 515-593 24-101 (109)
216 3i5x_A ATP-dependent RNA helic 80.5 10 0.00034 40.8 11.9 75 188-269 340-418 (563)
217 3bgw_A DNAB-like replicative h 80.3 1.7 5.7E-05 45.5 5.3 30 144-173 195-224 (444)
218 1x4d_A Matrin 3; structural ge 79.8 2.8 9.6E-05 33.6 5.4 74 516-595 15-96 (102)
219 3fht_A ATP-dependent RNA helic 79.5 5.9 0.0002 40.4 9.3 70 188-267 267-340 (412)
220 3sqw_A ATP-dependent RNA helic 79.3 6.7 0.00023 42.5 10.0 75 188-269 289-367 (579)
221 1e9r_A Conjugal transfer prote 79.1 1.1 3.7E-05 46.8 3.5 44 145-201 52-95 (437)
222 2dgx_A KIAA0430 protein; RRM d 79.0 5.6 0.00019 31.1 7.0 74 515-590 8-89 (96)
223 2db3_A ATP-dependent RNA helic 78.8 6.5 0.00022 40.8 9.4 68 190-267 303-374 (434)
224 1whw_A Hypothetical protein ri 78.5 10 0.00035 29.6 8.5 71 515-591 7-88 (99)
225 2dnq_A RNA-binding protein 4B; 78.4 9.3 0.00032 29.3 8.0 70 513-590 5-79 (90)
226 2v1x_A ATP-dependent DNA helic 78.2 6 0.0002 43.0 9.1 70 188-267 268-341 (591)
227 3pey_A ATP-dependent RNA helic 78.0 7.6 0.00026 39.2 9.5 75 188-272 244-322 (395)
228 1yks_A Genome polyprotein [con 77.9 3.4 0.00012 43.1 6.8 68 188-266 178-245 (440)
229 1x5t_A Splicing factor 3B subu 77.4 5 0.00017 31.2 6.3 69 515-589 4-84 (96)
230 1xti_A Probable ATP-dependent 77.1 7.3 0.00025 39.4 9.1 73 188-270 251-327 (391)
231 2kvi_A Nuclear polyadenylated 77.0 6.9 0.00024 30.6 6.9 70 514-591 8-83 (96)
232 2cpj_A Non-POU domain-containi 76.9 7.3 0.00025 30.5 7.2 70 515-590 14-88 (99)
233 3cmu_A Protein RECA, recombina 76.7 4.5 0.00015 49.9 8.1 48 143-204 1078-1125(2050)
234 1qvr_A CLPB protein; coiled co 76.4 5.8 0.0002 45.3 8.8 19 146-164 191-209 (854)
235 2oap_1 GSPE-2, type II secreti 76.4 2 7E-05 45.6 4.6 40 121-162 236-276 (511)
236 1sjq_A Polypyrimidine tract-bi 76.2 5.9 0.0002 31.9 6.3 71 514-590 14-91 (105)
237 1oyw_A RECQ helicase, ATP-depe 76.0 7.5 0.00026 41.5 9.0 69 189-267 238-310 (523)
238 1r6b_X CLPA protein; AAA+, N-t 75.8 11 0.00039 42.2 10.9 20 145-164 206-225 (758)
239 2i1q_A DNA repair and recombin 75.8 2.8 9.7E-05 41.6 5.3 25 145-169 97-121 (322)
240 2lxi_A RNA-binding protein 10; 75.5 5.8 0.0002 30.7 6.0 71 518-593 3-85 (91)
241 2j0s_A ATP-dependent RNA helic 75.4 8.7 0.0003 39.2 9.2 70 189-268 278-351 (410)
242 2hvz_A Splicing factor, argini 75.4 14 0.00048 28.9 8.5 68 518-591 2-75 (101)
243 1hv8_A Putative ATP-dependent 75.0 6.8 0.00023 39.1 8.1 72 188-269 239-314 (367)
244 1pzn_A RAD51, DNA repair and r 75.0 6 0.0002 39.7 7.4 22 145-166 130-151 (349)
245 2dnm_A SRP46 splicing factor; 74.8 5.9 0.0002 31.4 6.1 71 514-590 11-92 (103)
246 2cph_A RNA binding motif prote 74.8 9.4 0.00032 30.3 7.4 73 514-592 13-98 (107)
247 3b85_A Phosphate starvation-in 74.5 3.2 0.00011 38.2 4.9 32 132-163 8-39 (208)
248 1s2m_A Putative ATP-dependent 74.3 10 0.00034 38.5 9.2 71 188-268 259-333 (400)
249 3hr8_A Protein RECA; alpha and 74.1 1.2 4E-05 45.0 1.9 20 145-164 60-79 (356)
250 2yhs_A FTSY, cell division pro 74.0 7.7 0.00026 40.7 8.1 17 148-164 295-311 (503)
251 3e70_C DPA, signal recognition 73.8 11 0.00036 37.5 8.8 53 262-316 212-265 (328)
252 2dgo_A Cytotoxic granule-assoc 73.7 16 0.00054 29.5 8.6 74 514-593 13-97 (115)
253 1why_A Hypothetical protein ri 73.5 10 0.00035 29.5 7.1 71 515-591 16-93 (97)
254 3io5_A Recombination and repai 73.4 3.1 0.0001 41.0 4.6 41 148-199 30-70 (333)
255 3hws_A ATP-dependent CLP prote 73.3 3.9 0.00013 41.3 5.7 20 145-164 50-69 (363)
256 2cpd_A Apobec-1 stimulating pr 72.8 12 0.00043 29.1 7.5 70 514-589 13-87 (99)
257 1u0j_A DNA replication protein 72.5 6.1 0.00021 37.8 6.4 44 118-164 73-122 (267)
258 2wv9_A Flavivirin protease NS2 72.1 6.4 0.00022 43.4 7.4 68 187-266 410-478 (673)
259 2j37_W Signal recognition part 71.6 17 0.00057 38.5 10.1 20 148-167 103-122 (504)
260 1x5s_A Cold-inducible RNA-bind 71.1 9.7 0.00033 30.0 6.5 70 515-590 11-91 (102)
261 2yjt_D ATP-dependent RNA helic 73.6 0.86 2.9E-05 40.5 0.0 71 189-269 32-106 (170)
262 2dnz_A Probable RNA-binding pr 70.7 8.5 0.00029 29.8 6.0 68 516-589 5-83 (95)
263 1x4f_A Matrin 3; structural ge 70.1 14 0.00047 30.1 7.2 75 513-593 22-104 (112)
264 2px0_A Flagellar biosynthesis 70.0 2.7 9.3E-05 41.2 3.4 22 145-166 104-125 (296)
265 2dgt_A RNA-binding protein 30; 69.9 18 0.00063 27.6 7.8 68 514-589 8-80 (92)
266 2v6i_A RNA helicase; membrane, 69.8 6.2 0.00021 40.9 6.4 67 188-265 172-238 (431)
267 1p9r_A General secretion pathw 69.6 3.2 0.00011 42.8 4.0 28 135-162 154-183 (418)
268 2eyu_A Twitching motility prot 69.4 2 6.7E-05 41.3 2.2 21 143-163 22-42 (261)
269 3nbx_X ATPase RAVA; AAA+ ATPas 68.8 5.5 0.00019 42.2 5.7 31 133-163 28-58 (500)
270 2xau_A PRE-mRNA-splicing facto 68.7 11 0.00039 42.2 8.6 74 188-267 304-393 (773)
271 2gza_A Type IV secretion syste 68.5 2.6 9.1E-05 42.6 3.1 20 143-162 172-191 (361)
272 2bjv_A PSP operon transcriptio 68.5 3.3 0.00011 39.6 3.7 20 144-163 27-46 (265)
273 2cq3_A RNA-binding protein 9; 68.4 17 0.00059 28.5 7.5 72 514-591 13-93 (103)
274 2ffh_A Protein (FFH); SRP54, s 68.4 43 0.0015 34.3 12.2 21 145-165 97-117 (425)
275 3u4q_B ATP-dependent helicase/ 68.3 4.1 0.00014 48.4 5.1 38 150-197 5-42 (1166)
276 1x4a_A Splicing factor, argini 68.2 16 0.00055 29.1 7.4 69 515-589 21-97 (109)
277 3fe2_A Probable ATP-dependent 68.0 7.6 0.00026 36.4 6.1 52 362-417 101-160 (242)
278 1kgd_A CASK, peripheral plasma 68.0 2.6 9E-05 37.7 2.6 20 144-163 3-22 (180)
279 3beg_B Splicing factor, argini 67.8 12 0.00043 30.3 6.6 55 517-578 17-72 (115)
280 2jlq_A Serine protease subunit 67.4 11 0.00037 39.3 7.7 67 189-266 190-256 (451)
281 1x5u_A Splicing factor 3B subu 67.3 13 0.00043 29.4 6.5 69 515-589 14-93 (105)
282 3nwn_A Kinesin-like protein KI 67.2 3.2 0.00011 41.7 3.3 27 138-164 95-123 (359)
283 1wp9_A ATP-dependent RNA helic 67.1 11 0.00039 39.0 7.9 73 189-271 363-447 (494)
284 3mm4_A Histidine kinase homolo 67.0 58 0.002 29.2 11.8 67 144-210 18-84 (206)
285 1gku_B Reverse gyrase, TOP-RG; 67.0 7.3 0.00025 45.6 6.7 72 360-433 96-181 (1054)
286 4ag6_A VIRB4 ATPase, type IV s 66.8 5.6 0.00019 40.6 5.2 42 145-199 34-75 (392)
287 3ber_A Probable ATP-dependent 66.8 12 0.0004 35.4 7.1 68 362-433 110-192 (249)
288 3r27_A HnRNP L, heterogeneous 66.5 16 0.00055 28.9 6.7 69 516-590 21-96 (100)
289 1ofh_A ATP-dependent HSL prote 66.4 8.9 0.0003 37.3 6.5 19 146-164 50-68 (310)
290 2cpz_A CUG triplet repeat RNA- 66.2 14 0.00046 29.9 6.6 71 514-590 23-104 (115)
291 1q57_A DNA primase/helicase; d 66.0 6.3 0.00021 41.9 5.5 29 143-171 239-267 (503)
292 1bg2_A Kinesin; motor protein, 65.6 3.8 0.00013 40.6 3.4 26 139-164 69-96 (325)
293 1tue_A Replication protein E1; 65.3 7.1 0.00024 35.7 4.9 51 118-171 28-82 (212)
294 2lkz_A RNA-binding protein 5; 65.1 11 0.00036 29.6 5.4 73 513-589 6-93 (95)
295 4b4t_M 26S protease regulatory 64.8 2.5 8.5E-05 43.8 2.0 54 107-163 176-232 (434)
296 2pt7_A CAG-ALFA; ATPase, prote 64.7 3.1 0.0001 41.5 2.6 20 143-162 168-187 (330)
297 2cpx_A Hypothetical protein FL 64.4 15 0.00051 29.6 6.5 74 515-590 24-104 (115)
298 1wex_A Hypothetical protein (r 64.2 21 0.00071 28.4 7.1 71 514-590 13-90 (104)
299 2ad9_A Polypyrimidine tract-bi 64.1 17 0.0006 29.8 6.7 72 514-591 29-107 (119)
300 2cqb_A Peptidyl-prolyl CIS-tra 64.1 9.2 0.00031 30.1 5.0 70 515-590 11-91 (102)
301 2cq2_A Hypothetical protein LO 64.0 17 0.00057 29.7 6.5 76 515-596 24-111 (114)
302 1ojl_A Transcriptional regulat 63.7 3.8 0.00013 40.3 3.0 20 144-163 23-42 (304)
303 2h58_A Kinesin-like protein KI 63.6 4.3 0.00015 40.3 3.4 26 138-163 71-98 (330)
304 2diu_A KIAA0430 protein; struc 63.6 41 0.0014 26.3 8.3 77 515-596 8-89 (96)
305 1nu4_A U1A RNA binding domain; 63.6 13 0.00045 28.8 5.8 77 515-593 7-91 (97)
306 3tau_A Guanylate kinase, GMP k 63.5 3.6 0.00012 37.7 2.7 20 145-164 7-26 (208)
307 2dnp_A RNA-binding protein 14; 63.4 21 0.00072 27.1 6.9 67 515-589 8-79 (90)
308 1lv7_A FTSH; alpha/beta domain 63.2 5.3 0.00018 37.9 4.0 53 108-163 8-62 (257)
309 1t5c_A CENP-E protein, centrom 63.2 4.3 0.00015 40.7 3.3 25 139-163 69-95 (349)
310 2vvg_A Kinesin-2; motor protei 63.2 4.4 0.00015 40.6 3.4 25 139-163 81-107 (350)
311 1goj_A Kinesin, kinesin heavy 63.1 4.3 0.00015 40.7 3.4 25 139-163 72-98 (355)
312 2nr8_A Kinesin-like protein KI 63.1 4.3 0.00015 40.8 3.3 26 138-163 94-121 (358)
313 2gxq_A Heat resistant RNA depe 63.1 10 0.00036 34.2 5.9 52 362-417 71-128 (207)
314 3b6u_A Kinesin-like protein KI 63.0 4.3 0.00015 41.0 3.3 25 139-163 93-119 (372)
315 3dc4_A Kinesin-like protein NO 63.0 4.1 0.00014 40.7 3.2 25 139-163 86-112 (344)
316 1v8k_A Kinesin-like protein KI 62.9 4.5 0.00015 41.4 3.4 26 139-164 146-173 (410)
317 3cf2_A TER ATPase, transitiona 62.9 5.4 0.00018 44.8 4.4 99 147-303 512-623 (806)
318 3bor_A Human initiation factor 62.8 13 0.00046 34.6 6.7 68 362-432 97-178 (237)
319 2y65_A Kinesin, kinesin heavy 62.8 4.5 0.00016 40.8 3.4 25 139-163 76-102 (365)
320 2zfi_A Kinesin-like protein KI 62.8 4.5 0.00015 40.8 3.4 25 139-163 81-107 (366)
321 2cq1_A PTB-like protein L; RRM 62.7 16 0.00056 28.9 6.2 70 515-590 14-90 (101)
322 3gbj_A KIF13B protein; kinesin 62.7 4.4 0.00015 40.7 3.3 26 138-163 83-110 (354)
323 1x5p_A Negative elongation fac 62.6 26 0.0009 27.1 7.4 69 515-591 14-87 (97)
324 3t0q_A AGR253WP; kinesin, alph 62.5 4.5 0.00015 40.6 3.4 27 138-164 76-104 (349)
325 1x88_A Kinesin-like protein KI 62.5 4.3 0.00015 40.9 3.2 27 138-164 79-107 (359)
326 2r44_A Uncharacterized protein 62.4 2.9 9.9E-05 41.6 2.0 25 139-163 39-63 (331)
327 3bs9_A Nucleolysin TIA-1 isofo 62.3 5.4 0.00019 30.3 3.2 71 516-592 6-87 (87)
328 2oca_A DAR protein, ATP-depend 62.3 24 0.00081 37.2 9.3 74 189-271 349-426 (510)
329 1fj7_A Nucleolin RBD1, protein 62.3 35 0.0012 26.5 8.2 73 515-589 16-93 (101)
330 4a14_A Kinesin, kinesin-like p 62.2 4.8 0.00016 40.3 3.5 25 139-163 75-101 (344)
331 3lre_A Kinesin-like protein KI 62.2 4.6 0.00016 40.6 3.4 25 139-163 97-123 (355)
332 3a8t_A Adenylate isopentenyltr 62.1 3.5 0.00012 41.0 2.4 17 147-163 41-57 (339)
333 2whx_A Serine protease/ntpase/ 62.1 17 0.00059 39.6 8.2 68 188-266 356-423 (618)
334 1tf7_A KAIC; homohexamer, hexa 62.0 27 0.00093 37.1 9.7 43 259-303 369-416 (525)
335 4etp_A Kinesin-like protein KA 62.0 5 0.00017 41.1 3.6 26 139-164 132-159 (403)
336 2d9p_A Polyadenylate-binding p 61.8 13 0.00045 29.2 5.5 71 515-591 14-93 (103)
337 1j8m_F SRP54, signal recogniti 61.7 45 0.0015 32.3 10.4 20 146-165 98-117 (297)
338 2qmh_A HPR kinase/phosphorylas 61.6 3.9 0.00013 37.3 2.4 18 145-162 33-50 (205)
339 3vaa_A Shikimate kinase, SK; s 61.6 4.2 0.00014 37.0 2.7 20 145-164 24-43 (199)
340 3exa_A TRNA delta(2)-isopenten 61.5 3.5 0.00012 40.5 2.2 17 147-163 4-20 (322)
341 2wbe_C Bipolar kinesin KRP-130 61.3 4.5 0.00015 40.9 3.1 27 138-164 91-119 (373)
342 2pl3_A Probable ATP-dependent 61.2 17 0.00058 33.7 7.1 51 362-417 96-154 (236)
343 1lvg_A Guanylate kinase, GMP k 61.1 4.2 0.00014 37.0 2.7 20 145-164 3-22 (198)
344 3cob_A Kinesin heavy chain-lik 61.0 4.2 0.00015 41.0 2.9 25 139-163 71-97 (369)
345 3foz_A TRNA delta(2)-isopenten 60.9 3.8 0.00013 40.2 2.4 16 148-163 12-27 (316)
346 1f9v_A Kinesin-like protein KA 60.9 4.5 0.00016 40.5 3.0 27 138-164 75-103 (347)
347 1t6n_A Probable ATP-dependent 60.8 14 0.00049 33.7 6.4 52 363-417 82-142 (220)
348 2dgs_A DAZ-associated protein 60.5 13 0.00045 28.9 5.3 68 515-589 9-87 (99)
349 3ney_A 55 kDa erythrocyte memb 60.3 4.5 0.00015 36.8 2.6 20 144-163 17-36 (197)
350 2ewv_A Twitching motility prot 60.1 3.4 0.00012 42.0 2.0 21 143-163 133-153 (372)
351 3u06_A Protein claret segregat 60.1 5.3 0.00018 41.0 3.4 26 138-163 129-156 (412)
352 2dnh_A Bruno-like 5, RNA bindi 60.0 19 0.00064 28.4 6.2 72 515-592 14-98 (105)
353 2ytc_A PRE-mRNA-splicing facto 59.9 19 0.00065 26.9 6.0 57 515-577 11-68 (85)
354 3bfn_A Kinesin-like protein KI 59.8 4.6 0.00016 41.0 2.9 24 140-163 91-116 (388)
355 2la4_A Nuclear and cytoplasmic 59.7 23 0.00078 27.6 6.6 68 515-588 26-98 (101)
356 2heh_A KIF2C protein; kinesin, 59.7 5.4 0.00018 40.5 3.3 26 139-164 126-153 (387)
357 3jvv_A Twitching mobility prot 59.6 4 0.00014 41.2 2.4 19 145-163 122-140 (356)
358 2cpe_A RNA-binding protein EWS 59.4 15 0.0005 29.5 5.5 74 515-589 14-101 (113)
359 3iuy_A Probable ATP-dependent 59.2 19 0.00066 33.1 7.1 52 362-417 93-151 (228)
360 3iij_A Coilin-interacting nucl 59.0 3.1 0.00011 37.0 1.3 21 144-164 9-29 (180)
361 2z0m_A 337AA long hypothetical 58.9 18 0.0006 35.5 7.1 69 188-270 221-293 (337)
362 3trf_A Shikimate kinase, SK; a 58.8 4.9 0.00017 35.8 2.7 19 146-164 5-23 (185)
363 2ze6_A Isopentenyl transferase 58.7 4.4 0.00015 38.6 2.4 16 148-163 3-18 (253)
364 1zp6_A Hypothetical protein AT 58.7 2.9 0.0001 37.5 1.1 21 143-163 6-26 (191)
365 2owm_A Nckin3-434, related to 58.6 5.8 0.0002 41.1 3.4 25 139-163 128-154 (443)
366 1um8_A ATP-dependent CLP prote 58.3 12 0.00043 37.7 5.9 19 146-164 72-90 (376)
367 2err_A Ataxin-2-binding protei 58.2 32 0.0011 27.4 7.3 71 514-590 27-106 (109)
368 2cpf_A RNA binding motif prote 58.2 15 0.0005 28.6 5.2 68 516-589 5-86 (98)
369 2j41_A Guanylate kinase; GMP, 58.2 4.9 0.00017 36.5 2.6 20 144-163 4-23 (207)
370 2rep_A Kinesin-like protein KI 58.2 5.7 0.0002 40.2 3.2 26 139-164 107-134 (376)
371 2wbr_A GW182, gawky, LD47780P; 58.1 30 0.001 26.7 6.5 67 517-589 8-79 (89)
372 1qhx_A CPT, protein (chloramph 58.0 4.2 0.00014 35.9 2.0 19 146-164 3-21 (178)
373 3cmw_A Protein RECA, recombina 57.9 8.7 0.0003 46.8 5.2 90 146-274 1431-1522(1706)
374 3lw7_A Adenylate kinase relate 57.9 3.9 0.00013 35.8 1.8 17 148-164 3-19 (179)
375 2qor_A Guanylate kinase; phosp 57.4 4.1 0.00014 37.2 1.9 21 143-163 9-29 (204)
376 3b5x_A Lipid A export ATP-bind 57.3 14 0.00049 39.9 6.5 41 259-302 496-536 (582)
377 2ius_A DNA translocase FTSK; n 57.3 11 0.00039 39.7 5.5 28 145-172 166-193 (512)
378 2jrs_A RNA-binding protein 39; 57.3 39 0.0013 26.9 7.7 76 510-591 20-106 (108)
379 3b9p_A CG5977-PA, isoform A; A 57.3 4.1 0.00014 39.7 2.0 19 146-164 54-72 (297)
380 3tr0_A Guanylate kinase, GMP k 57.3 5.5 0.00019 36.1 2.7 19 145-163 6-24 (205)
381 3o8b_A HCV NS3 protease/helica 57.2 13 0.00045 40.7 6.1 66 187-266 396-461 (666)
382 1whx_A Hypothetical protein ri 57.2 30 0.001 27.7 7.0 69 516-590 10-83 (111)
383 3a00_A Guanylate kinase, GMP k 56.8 5.7 0.0002 35.6 2.8 17 147-163 2-18 (186)
384 1ixz_A ATP-dependent metallopr 56.8 3.5 0.00012 39.1 1.3 53 108-163 12-66 (254)
385 3md1_A Nuclear and cytoplasmic 56.4 21 0.00071 26.5 5.6 68 518-591 3-81 (83)
386 3tbk_A RIG-I helicase domain; 56.2 15 0.00052 39.0 6.6 73 189-267 391-476 (555)
387 3rc3_A ATP-dependent RNA helic 56.2 26 0.00088 38.5 8.3 73 190-273 323-401 (677)
388 2cqg_A TDP-43, TAR DNA-binding 56.1 31 0.001 27.0 6.8 71 515-591 14-93 (103)
389 1z6g_A Guanylate kinase; struc 55.9 6.2 0.00021 36.5 2.9 20 144-163 21-40 (218)
390 2fc9_A NCL protein; structure 55.9 31 0.0011 26.8 6.8 66 515-589 14-89 (101)
391 2jvr_A Nucleolar protein 3; RN 55.8 42 0.0014 27.0 7.6 74 515-593 27-107 (111)
392 1w36_B RECB, exodeoxyribonucle 55.8 17 0.00057 43.1 7.2 61 148-209 18-78 (1180)
393 2cqi_A Nucleolysin TIAR; RNA r 55.8 24 0.00082 27.6 6.1 71 514-590 13-92 (103)
394 1vec_A ATP-dependent RNA helic 55.8 15 0.00052 33.0 5.6 52 362-417 70-130 (206)
395 1wf1_A RNA-binding protein RAL 55.6 32 0.0011 27.3 7.0 65 517-589 28-98 (110)
396 2i2y_A Fusion protein consists 55.5 44 0.0015 28.3 8.2 71 514-590 71-147 (150)
397 4gp7_A Metallophosphoesterase; 55.5 4.2 0.00014 35.9 1.6 20 145-164 8-27 (171)
398 1p1t_A Cleavage stimulation fa 55.5 21 0.0007 28.0 5.7 71 517-593 9-90 (104)
399 1u94_A RECA protein, recombina 55.3 10 0.00034 38.2 4.5 28 145-172 62-89 (356)
400 1ex7_A Guanylate kinase; subst 55.2 5.3 0.00018 36.0 2.2 16 147-162 2-17 (186)
401 2do4_A Squamous cell carcinoma 55.1 36 0.0012 26.4 7.1 69 516-590 17-95 (100)
402 4gl2_A Interferon-induced heli 55.1 6.4 0.00022 43.7 3.4 74 188-267 401-488 (699)
403 2zr9_A Protein RECA, recombina 55.0 9.9 0.00034 38.1 4.4 28 145-172 60-87 (349)
404 1x4h_A RNA-binding protein 28; 54.9 23 0.00077 28.2 5.9 70 514-589 13-99 (111)
405 2dgw_A Probable RNA-binding pr 54.6 15 0.00052 28.0 4.6 69 515-591 9-87 (91)
406 3vkg_A Dynein heavy chain, cyt 54.5 9.7 0.00033 49.3 5.0 49 116-165 873-925 (3245)
407 4fxv_A ELAV-like protein 1; RN 54.4 8.5 0.00029 30.4 3.1 67 517-589 20-97 (99)
408 2dng_A Eukaryotic translation 54.2 11 0.00038 29.7 3.8 67 515-589 14-91 (103)
409 1y63_A LMAJ004144AAA protein; 54.2 5.5 0.00019 35.6 2.1 20 145-164 9-28 (184)
410 1wrb_A DJVLGB; RNA helicase, D 54.1 17 0.00058 34.1 5.8 51 363-417 100-158 (253)
411 2oxc_A Probable ATP-dependent 54.0 13 0.00044 34.4 4.9 51 362-417 91-150 (230)
412 3crm_A TRNA delta(2)-isopenten 54.0 5.8 0.0002 39.2 2.4 16 148-163 7-22 (323)
413 2dhg_A TRNA selenocysteine ass 53.9 30 0.001 27.1 6.4 59 515-578 8-72 (104)
414 1kht_A Adenylate kinase; phosp 53.8 5.4 0.00018 35.6 2.1 18 146-163 3-20 (192)
415 3eiq_A Eukaryotic initiation f 53.7 7.7 0.00026 39.6 3.5 70 189-268 282-355 (414)
416 1qde_A EIF4A, translation init 53.7 20 0.00069 32.7 6.2 51 362-417 81-139 (224)
417 1kag_A SKI, shikimate kinase I 53.7 7.1 0.00024 34.2 2.8 18 146-163 4-21 (173)
418 4b4t_J 26S protease regulatory 53.6 5.2 0.00018 40.9 2.0 52 109-163 145-199 (405)
419 2do0_A HnRNP M, heterogeneous 53.6 30 0.001 27.6 6.5 68 516-589 15-92 (114)
420 2a3j_A U1 small nuclear ribonu 53.3 38 0.0013 28.0 7.2 77 515-593 28-112 (127)
421 2ykg_A Probable ATP-dependent 53.2 8.9 0.00031 42.5 4.1 74 188-267 399-485 (696)
422 2hgn_A Heterogeneous nuclear r 53.2 11 0.00036 32.1 3.6 54 517-578 47-106 (139)
423 1ly1_A Polynucleotide kinase; 53.1 5.3 0.00018 35.3 1.8 16 148-163 4-19 (181)
424 1znw_A Guanylate kinase, GMP k 53.1 7.1 0.00024 35.6 2.8 22 142-163 16-37 (207)
425 1iy2_A ATP-dependent metallopr 52.9 4.5 0.00015 39.1 1.4 54 107-163 35-90 (278)
426 3ly5_A ATP-dependent RNA helic 52.9 19 0.00065 34.2 5.9 68 362-433 125-207 (262)
427 4eun_A Thermoresistant glucoki 52.8 5.9 0.0002 36.0 2.2 20 145-164 28-47 (200)
428 2dis_A Unnamed protein product 52.5 50 0.0017 26.0 7.7 74 515-593 7-94 (109)
429 1xwi_A SKD1 protein; VPS4B, AA 52.4 5.2 0.00018 39.6 1.8 49 109-163 9-62 (322)
430 2e5j_A Methenyltetrahydrofolat 52.3 67 0.0023 24.6 8.2 73 514-591 17-94 (97)
431 4b4t_H 26S protease regulatory 52.3 5.9 0.0002 41.2 2.2 52 109-163 206-260 (467)
432 2iut_A DNA translocase FTSK; n 52.2 15 0.00053 39.2 5.5 27 147-173 215-241 (574)
433 3t15_A Ribulose bisphosphate c 52.1 5.2 0.00018 39.0 1.7 17 147-163 37-53 (293)
434 2va8_A SSO2462, SKI2-type heli 51.7 36 0.0012 37.7 8.8 74 189-268 254-363 (715)
435 1p27_B RNA-binding protein 8A; 51.7 34 0.0012 26.8 6.5 71 515-591 22-103 (106)
436 4akg_A Glutathione S-transfera 51.6 15 0.00051 47.1 6.0 50 116-166 890-943 (2695)
437 3d3q_A TRNA delta(2)-isopenten 51.6 6.7 0.00023 39.0 2.4 16 148-163 9-24 (340)
438 2dgp_A Bruno-like 4, RNA bindi 51.4 41 0.0014 26.3 6.9 59 514-578 11-76 (106)
439 1x4b_A Heterogeneous nuclear r 51.3 17 0.00058 29.3 4.6 67 516-589 27-104 (116)
440 3kb2_A SPBC2 prophage-derived 51.2 5.8 0.0002 34.6 1.8 17 148-164 3-19 (173)
441 4fcw_A Chaperone protein CLPB; 50.9 7 0.00024 38.2 2.5 18 147-164 48-65 (311)
442 1ry6_A Internal kinesin; kines 50.8 8.9 0.0003 38.5 3.2 20 145-164 82-103 (360)
443 1knq_A Gluconate kinase; ALFA/ 50.4 5.7 0.00019 35.0 1.6 19 146-164 8-26 (175)
444 4b4t_L 26S protease subunit RP 50.2 6.1 0.00021 40.9 1.9 18 146-163 215-232 (437)
445 1wf0_A TDP-43, TAR DNA-binding 50.0 30 0.001 26.1 5.6 51 516-572 5-57 (88)
446 2xnq_A Nuclear polyadenylated 49.8 47 0.0016 25.7 6.9 70 512-589 18-93 (97)
447 3nwj_A ATSK2; P loop, shikimat 49.8 9.3 0.00032 36.2 3.1 21 144-164 46-66 (250)
448 1s96_A Guanylate kinase, GMP k 49.6 8.6 0.00029 35.6 2.7 21 143-163 13-33 (219)
449 2cvh_A DNA repair and recombin 49.6 7.3 0.00025 35.6 2.3 22 145-166 19-40 (220)
450 1rk8_A CG8781-PA, CG8781-PA pr 49.5 26 0.00088 30.5 5.8 72 515-592 71-153 (165)
451 2x1f_A MRNA 3'-END-processing 49.5 22 0.00075 27.4 4.8 71 518-594 4-85 (96)
452 3lnc_A Guanylate kinase, GMP k 49.4 7.5 0.00025 36.2 2.3 20 144-163 25-44 (231)
453 3eph_A TRNA isopentenyltransfe 49.3 7.2 0.00025 39.8 2.3 16 148-163 4-19 (409)
454 1wi8_A EIF-4B, eukaryotic tran 49.1 27 0.00093 27.4 5.4 67 515-589 14-92 (104)
455 3p32_A Probable GTPase RV1496/ 48.9 1.1E+02 0.0037 30.3 11.1 17 148-164 81-97 (355)
456 3euj_A Chromosome partition pr 48.4 12 0.00043 39.1 4.0 37 260-301 413-449 (483)
457 2r8r_A Sensor protein; KDPD, P 48.3 18 0.00063 33.5 4.7 26 148-173 8-33 (228)
458 3mdf_A Peptidyl-prolyl CIS-tra 48.2 17 0.00059 27.2 3.9 68 515-588 6-84 (85)
459 2c9o_A RUVB-like 1; hexameric 48.1 7 0.00024 40.9 2.1 19 146-164 63-81 (456)
460 1g8p_A Magnesium-chelatase 38 48.1 9.1 0.00031 38.0 2.9 18 146-163 45-62 (350)
461 2bdt_A BH3686; alpha-beta prot 48.1 7.1 0.00024 34.9 1.8 18 147-164 3-20 (189)
462 4f25_A Polyadenylate-binding p 47.9 18 0.00063 29.2 4.3 70 516-591 5-83 (115)
463 2cqp_A RNA-binding protein 12; 47.0 24 0.00081 27.3 4.7 74 513-589 12-93 (98)
464 1f2t_A RAD50 ABC-ATPase; DNA d 47.0 7.7 0.00026 33.4 1.8 15 148-162 25-39 (149)
465 2la6_A RNA-binding protein FUS 46.8 76 0.0026 24.3 7.8 70 513-588 10-98 (99)
466 1m7g_A Adenylylsulfate kinase; 46.5 9.5 0.00032 34.9 2.5 31 133-164 13-43 (211)
467 2z83_A Helicase/nucleoside tri 46.5 17 0.00059 37.8 4.8 68 188-266 191-258 (459)
468 3t61_A Gluconokinase; PSI-biol 46.4 7.6 0.00026 35.2 1.8 18 147-164 19-36 (202)
469 2fc8_A NCL protein; structure 46.4 30 0.001 27.0 5.2 66 515-589 14-90 (102)
470 2lea_A Serine/arginine-rich sp 46.1 27 0.00092 29.2 5.2 70 515-590 46-126 (135)
471 2e5h_A Zinc finger CCHC-type a 46.0 20 0.00068 27.5 4.0 68 515-588 15-93 (94)
472 2bz2_A Negative elongation fac 45.9 63 0.0022 26.3 7.3 70 515-592 38-112 (121)
473 1gvn_B Zeta; postsegregational 45.8 8.1 0.00028 37.5 2.0 18 147-164 34-51 (287)
474 4b4t_I 26S protease regulatory 45.7 7.9 0.00027 39.8 1.9 18 146-163 216-233 (437)
475 2jvo_A Nucleolar protein 3; nu 45.6 46 0.0016 26.4 6.3 69 514-590 29-102 (108)
476 2hzc_A Splicing factor U2AF 65 45.6 41 0.0014 25.0 5.8 61 517-578 7-73 (87)
477 2ki2_A SS-DNA binding protein 45.5 17 0.0006 27.6 3.6 69 517-591 2-80 (90)
478 2r2a_A Uncharacterized protein 45.5 11 0.00038 34.2 2.8 18 148-165 7-24 (199)
479 3cm0_A Adenylate kinase; ATP-b 45.4 7.9 0.00027 34.4 1.7 19 146-164 4-22 (186)
480 2lcw_A RNA-binding protein FUS 51.2 4.4 0.00015 33.0 0.0 31 559-589 58-93 (116)
481 3c8u_A Fructokinase; YP_612366 45.1 9.9 0.00034 34.7 2.4 18 145-162 21-38 (208)
482 3qf7_A RAD50; ABC-ATPase, ATPa 45.1 7.9 0.00027 39.1 1.8 16 148-163 25-40 (365)
483 2x8a_A Nuclear valosin-contain 45.0 8.1 0.00028 37.2 1.8 52 109-163 7-61 (274)
484 3p5t_L Cleavage and polyadenyl 45.0 10 0.00036 29.0 2.2 71 518-592 3-84 (90)
485 3uie_A Adenylyl-sulfate kinase 44.9 9.6 0.00033 34.5 2.3 20 145-164 24-43 (200)
486 1ye8_A Protein THEP1, hypothet 44.9 11 0.00037 33.6 2.5 30 259-288 97-128 (178)
487 1oo0_B CG8781-PA, drosophila Y 44.9 27 0.00093 27.7 4.8 70 515-590 25-105 (110)
488 1tev_A UMP-CMP kinase; ploop, 44.7 7.8 0.00027 34.6 1.6 19 146-164 3-21 (196)
489 2r62_A Cell division protease 44.6 4.3 0.00015 38.8 -0.2 19 146-164 44-62 (268)
490 4a74_A DNA repair and recombin 44.4 7.9 0.00027 35.7 1.6 20 145-164 24-43 (231)
491 1in4_A RUVB, holliday junction 44.4 11 0.00037 37.5 2.7 18 147-164 52-69 (334)
492 3dkp_A Probable ATP-dependent 44.3 19 0.00066 33.5 4.4 53 362-417 97-157 (245)
493 3pxg_A Negative regulator of g 44.3 13 0.00043 39.0 3.3 27 145-172 200-226 (468)
494 2rhm_A Putative kinase; P-loop 44.1 8.5 0.00029 34.3 1.8 19 146-164 5-23 (193)
495 1nij_A Hypothetical protein YJ 44.0 18 0.0006 35.7 4.2 15 148-162 6-20 (318)
496 2cq0_A Eukaryotic translation 44.0 16 0.00055 28.7 3.2 71 514-590 13-94 (103)
497 3tif_A Uncharacterized ABC tra 43.8 8.5 0.00029 36.1 1.7 17 145-161 30-46 (235)
498 2i3b_A HCR-ntpase, human cance 43.7 13 0.00043 33.5 2.8 42 259-305 103-146 (189)
499 2kn4_A Immunoglobulin G-bindin 43.4 44 0.0015 28.5 6.3 89 511-599 65-158 (158)
500 2v9p_A Replication protein E1; 43.4 11 0.00037 37.0 2.4 25 143-167 123-147 (305)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-61 Score=520.19 Aligned_cols=365 Identities=33% Similarity=0.506 Sum_probs=318.6
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
....|++++|++.+++.|.+.||..|||+|.++||.+++++|++++||||||||++|++|+++.+...... ....
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-----~~~~ 128 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-----LELG 128 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-----CCTT
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-----cccC
Confidence 34579999999999999999999999999999999999999999999999999999999999998764321 1134
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEe
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lV 266 (652)
++++|||+|||+||.|+++++++++...++++..++|+.....+...+..+++|+|+||++|++++.+..+.+.++++||
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lV 208 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVV 208 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEE
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEE
Confidence 67899999999999999999999998888999999999999999888888999999999999999999888899999999
Q ss_pred cCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCc
Q 006272 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (652)
Q Consensus 267 iDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (652)
|||||+|++++|...+..|+..+......|+++||||+|..+..++..++ .++..+.+... ......+.+.++.+..
T Consensus 209 lDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l-~~~~~i~~~~~--~~~~~~i~~~~~~~~~ 285 (434)
T 2db3_A 209 LDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFL-KNYVFVAIGIV--GGACSDVKQTIYEVNK 285 (434)
T ss_dssp EETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTC-SSCEEEEESST--TCCCTTEEEEEEECCG
T ss_pred EccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhc-cCCEEEEeccc--cccccccceEEEEeCc
Confidence 99999999999999999999987544478999999999999999999988 45555555432 2445678888888888
Q ss_pred hhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccC
Q 006272 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (652)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 422 (652)
..+...+..++.... .++||||+++..|+.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 286 ~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rG 363 (434)
T 2db3_A 286 YAKRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRG 363 (434)
T ss_dssp GGHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSS
T ss_pred HHHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCC
Confidence 888888888887763 349999999999999999996 67899999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHhc
Q 006272 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNN 482 (652)
Q Consensus 423 ldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 482 (652)
||+|+|++|||||+|.++++|+||+|||||+|..+.+++++....... +...+.+++..
T Consensus 364 lDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~-~~~~l~~~l~~ 422 (434)
T 2db3_A 364 LDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRA-IAADLVKILEG 422 (434)
T ss_dssp CCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGG-GHHHHHHHHHH
T ss_pred CCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHH-HHHHHHHHHHH
Confidence 999999999999999999999999999999999877666654344433 33334444443
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.6e-57 Score=482.94 Aligned_cols=368 Identities=34% Similarity=0.505 Sum_probs=312.5
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCC-------
Q 006272 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA------- 178 (652)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~------- 178 (652)
.....|++++|++.+.+.|...||..|||+|.++|+.++.++|++++||||||||++|++|+++.+.......
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 3345699999999999999999999999999999999999999999999999999999999999876432110
Q ss_pred -cccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCc
Q 006272 179 -SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI 257 (652)
Q Consensus 179 -~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~ 257 (652)
.........+++|||+||++|+.|+++.++.++...++.+..++|+.....+...+..+++|+|+||++|.+++..+.+
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~ 171 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKI 171 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSB
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCc
Confidence 0000112346799999999999999999999998889999999999999988888888899999999999999999888
Q ss_pred CCCCceEEecCcchhhhhcCcHHHHHHHHHhcc--CCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCC
Q 006272 258 DLSSLKFRVLDEADEMLRMGFVEDVELILGKVE--DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335 (652)
Q Consensus 258 ~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~--~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 335 (652)
.+.++++|||||||++++++|...+..++.... .....|+++||||++..+..+...++ ..+..+.+.. ......
T Consensus 172 ~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~ 248 (417)
T 2i4i_A 172 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL-DEYIFLAVGR--VGSTSE 248 (417)
T ss_dssp CCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC-SSCEEEEEC------CCS
T ss_pred ChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc-CCCEEEEeCC--CCCCcc
Confidence 899999999999999999999999999998543 22367999999999999998888888 4454444432 224456
Q ss_pred CceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCce
Q 006272 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411 (652)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~ 411 (652)
++.+.++.+....+...+..++.....++++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 328 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred CceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC
Confidence 7788888888888888899999887678899999999999999999986 678999999999999999999999999
Q ss_pred EEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHH
Q 006272 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAE 477 (652)
Q Consensus 412 vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~ 477 (652)
|||||+++++|||+|++++||+|++|.++.+|+||+||+||.|..+.+++ ++.+.+...+..+.+
T Consensus 329 vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~-~~~~~~~~~~~~l~~ 393 (417)
T 2i4i_A 329 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS-FFNERNINITKDLLD 393 (417)
T ss_dssp EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEE-EECGGGGGGHHHHHH
T ss_pred EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEE-EEccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765544 455555555554443
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4.6e-56 Score=475.27 Aligned_cols=350 Identities=30% Similarity=0.469 Sum_probs=304.5
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
....|+++++++.+.+.|.+.||..|+|+|.++|+.++.++|+++++|||||||++|++|+++.+... ..
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~----------~~ 104 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ----------VR 104 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT----------SC
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc----------cC
Confidence 34579999999999999999999999999999999999999999999999999999999999887532 12
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEe
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lV 266 (652)
.+++|||+||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++.+..+.+.++++||
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV 184 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEE
Confidence 35799999999999999999999998899999999999999988888888899999999999999999888899999999
Q ss_pred cCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCc
Q 006272 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (652)
Q Consensus 267 iDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (652)
|||||++++++|...+..++..++. ..|+++||||++..+..+...++ ..+..+.+. ........+.+.+..+..
T Consensus 185 iDEah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 259 (410)
T 2j0s_A 185 LDEADEMLNKGFKEQIYDVYRYLPP--ATQVVLISATLPHEILEMTNKFM-TDPIRILVK--RDELTLEGIKQFFVAVER 259 (410)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTSCT--TCEEEEEESCCCHHHHTTGGGTC-SSCEEECCC--GGGCSCTTEEEEEEEESS
T ss_pred EccHHHHHhhhhHHHHHHHHHhCcc--CceEEEEEcCCCHHHHHHHHHHc-CCCEEEEec--CccccCCCceEEEEEeCc
Confidence 9999999999999999999988876 78999999999998887777777 344443322 223444566776665554
Q ss_pred hh-hhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEcccccc
Q 006272 347 SA-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (652)
Q Consensus 347 ~~-~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 421 (652)
.. +...+..++... ..+++||||++++.++.++..|. .+..+||++++.+|..+++.|++|..+|||||+++++
T Consensus 260 ~~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 338 (410)
T 2j0s_A 260 EEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 338 (410)
T ss_dssp TTHHHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSS
T ss_pred HHhHHHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhC
Confidence 43 777788888776 45799999999999999999986 6889999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHH
Q 006272 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFK 473 (652)
Q Consensus 422 Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~ 473 (652)
|||+|++++||+||+|.++..|+||+||+||.|..+.+++ ++.+.+...+.
T Consensus 339 Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~-~~~~~~~~~~~ 389 (410)
T 2j0s_A 339 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAIN-FVKNDDIRILR 389 (410)
T ss_dssp SCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEE-EEEGGGHHHHH
T ss_pred cCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEE-EecHHHHHHHH
Confidence 9999999999999999999999999999999998876554 44445444443
No 4
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.3e-56 Score=488.83 Aligned_cols=353 Identities=30% Similarity=0.428 Sum_probs=174.4
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~--~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 185 (652)
...|.+++|++.+++.|.++||..|+|+|.++|+.++.+ +|+|++||||||||++|++|+++.+... .
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~----------~ 160 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA----------N 160 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT----------S
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc----------C
Confidence 457999999999999999999999999999999999987 9999999999999999999999887543 2
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCcCCCCce
Q 006272 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLK 263 (652)
Q Consensus 186 ~~~~~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~-~~~~l~~~~ 263 (652)
..+++|||+||++|+.|+++.++.+.... ++.+....++...... ....++|+|+||++|++++.+ ..+.+.+++
T Consensus 161 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~ 237 (479)
T 3fmp_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIK 237 (479)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCC
T ss_pred CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCC
Confidence 34579999999999999999999988753 6777777777655422 234579999999999999966 556789999
Q ss_pred EEecCcchhhhh-cCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEc
Q 006272 264 FRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (652)
Q Consensus 264 ~lViDEah~~l~-~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (652)
+|||||||++++ .+|...+..++..++. .+|+++||||++..+..++..++ ..+..+.+.... .....+.+.++
T Consensus 238 ~iViDEah~~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~~~~~~~ 312 (479)
T 3fmp_B 238 VFVLDEADVMIATQGHQDQSIRIQRMLPR--NCQMLLFSATFEDSVWKFAQKVV-PDPNVIKLKREE--ETLDTIKQYYV 312 (479)
T ss_dssp EEEECCHHHHHTSTTHHHHHHHHHTTSCT--TSEEEEEESCCCHHHHHHHHHHS-SSEEEEEEC----------------
T ss_pred EEEEECHHHHhhcCCcHHHHHHHHhhCCc--cceEEEEeCCCCHHHHHHHHHHc-CCCeEEeccccc--cCcCCceEEEE
Confidence 999999999997 6888888888888876 78999999999999999998888 566666654332 34445666666
Q ss_pred cCCc-hhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEcc
Q 006272 343 PCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (652)
Q Consensus 343 ~~~~-~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~ 417 (652)
.+.. ..+...+..++... ...++||||+++..|+.++..|. .+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 313 ~~~~~~~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~ 391 (479)
T 3fmp_B 313 LCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCCHHHHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc
Confidence 5544 45666666666654 45799999999999999999997 688999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEcCCCC------CHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHH
Q 006272 418 VAARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELL 480 (652)
Q Consensus 418 ~~~~Gldi~~v~~VI~~~~p~------s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~ 480 (652)
++++|||+|+|++||+||+|. +..+|+||+|||||.|..|.+++++...... .+...+++.+
T Consensus 392 ~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~-~~~~~i~~~~ 459 (479)
T 3fmp_B 392 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSM-NILNRIQEHF 459 (479)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchH-HHHHHHHHHh
Confidence 999999999999999999994 6789999999999999887766655444333 3333444443
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.8e-54 Score=456.46 Aligned_cols=349 Identities=29% Similarity=0.440 Sum_probs=304.7
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
....|++++|++.+.+.|.+.||..|+|+|.++++.++.++++++++|||||||++|++|++..+.... .
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~----------~ 88 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL----------N 88 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS----------C
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc----------C
Confidence 346799999999999999999999999999999999999999999999999999999999998875431 2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEe
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lV 266 (652)
++++||++||++|+.|+++.++.++...++.+..++|+.....+...+...++|+|+||++|.+++.+....+.++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEE
Confidence 34699999999999999999999998889999999999998888777888899999999999999988878899999999
Q ss_pred cCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCc
Q 006272 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (652)
Q Consensus 267 iDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (652)
|||||++++.+|...+..++..++. ..|+++||||++..+......++. .+..+.+.. ......+.+++..+..
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~ 242 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLPP--THQSLLFSATFPLTVKEFMVKHLH-KPYEINLME---ELTLKGITQYYAFVEE 242 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSCS--SCEEEEEESCCCHHHHHHHHHHCS-SCEEESCCS---SCBCTTEEEEEEECCG
T ss_pred EeCchHhhhhchHHHHHHHHHhCCc--CceEEEEEecCCHHHHHHHHHHcC-CCeEEEecc---ccccCCceeEEEEech
Confidence 9999999998899999999988876 689999999999999888888873 343333221 2344567777777777
Q ss_pred hhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccC
Q 006272 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (652)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 422 (652)
..+...+..++... ..+++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 243 ~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 321 (400)
T 1s2m_A 243 RQKLHCLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRG 321 (400)
T ss_dssp GGHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSS
T ss_pred hhHHHHHHHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccC
Confidence 78888888888776 56899999999999999999986 67889999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHH
Q 006272 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFK 473 (652)
Q Consensus 423 ldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~ 473 (652)
||+|++++||+|++|.++.+|+||+||+||.|..+.++++ +.+.+...+.
T Consensus 322 idip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l-~~~~~~~~~~ 371 (400)
T 1s2m_A 322 IDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINL-INWNDRFNLY 371 (400)
T ss_dssp CCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEE-ECGGGHHHHH
T ss_pred CCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEE-eccchHHHHH
Confidence 9999999999999999999999999999999988765554 4555444433
No 6
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=7.9e-55 Score=484.83 Aligned_cols=361 Identities=28% Similarity=0.468 Sum_probs=292.3
Q ss_pred CCCCcccccC----CCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCc
Q 006272 106 EHPNAVSRFR----ISVPLREKLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179 (652)
Q Consensus 106 ~~~~~~~~~~----l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l--~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~ 179 (652)
..+..|.+|. |++.++++|..+||..|+|+|.++|+.++ .++|+|++||||||||++|++|+++.+......
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~-- 91 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-- 91 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc--
Confidence 3444566664 99999999999999999999999999999 789999999999999999999999998765421
Q ss_pred ccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhc----CCCceEEEEeCCcchHHHHHHhc-CCCcEEEeCcHHHHHHHHh
Q 006272 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG----AVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIER 254 (652)
Q Consensus 180 ~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~ 254 (652)
....+++|||+||++|+.|+++++..+.. ...+.+..++|+.....+...+. .+++|+|+||++|++++.+
T Consensus 92 ----~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~ 167 (579)
T 3sqw_A 92 ----SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK 167 (579)
T ss_dssp ----STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred ----ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHh
Confidence 12356799999999999999999998763 24577889999999888877774 4799999999999999876
Q ss_pred C-CcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCC-----CCceEEEEcccCChHHHHHHHHhcccCCeEEEEcc-
Q 006272 255 G-NIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA-----NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG- 327 (652)
Q Consensus 255 ~-~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~-----~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~- 327 (652)
. ...++++++|||||||+|++++|..++..|+..++.. ..+|+++||||+++.+..++..++. .+..+.+..
T Consensus 168 ~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~-~~~~~~~~~~ 246 (579)
T 3sqw_A 168 YSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN-KKECLFLDTV 246 (579)
T ss_dssp HHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCC-SSEEEEEESS
T ss_pred ccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcC-CCceEEEeec
Confidence 4 4468889999999999999999999999999887542 2679999999999999988888884 444443322
Q ss_pred -CcccccCCCceEEEccCCc--hhhhhhH---HHHHHhhCCCCeEEEEecchhHHHHHHHhcC-------CCcccccccc
Q 006272 328 -NEKMKASTNVRHIVLPCSS--SARSQVI---PDIIRCYSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQ 394 (652)
Q Consensus 328 -~~~~~~~~~~~~~~~~~~~--~~~~~~l---~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~-------~~~~lh~~~~ 394 (652)
.........+.+.+..+.. ......+ ...+.....+.++||||+|+..|+.++..|. .+..+||+|+
T Consensus 247 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~ 326 (579)
T 3sqw_A 247 DKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKIT 326 (579)
T ss_dssp CSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSC
T ss_pred CccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 2223344455555544432 2222222 3333333467899999999999999998885 4677999999
Q ss_pred hHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHH
Q 006272 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS 474 (652)
Q Consensus 395 ~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~ 474 (652)
+.+|..+++.|++|+.+|||||+++++|||+|+|++||+|++|.+++.|+||+|||||+|..+.++++ +.+.+...+..
T Consensus 327 ~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~-~~~~e~~~~~~ 405 (579)
T 3sqw_A 327 QNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF-ICKDELPFVRE 405 (579)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEE-EEGGGHHHHHH
T ss_pred HHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEE-EcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987766554 44455544443
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7.6e-54 Score=455.08 Aligned_cols=356 Identities=26% Similarity=0.400 Sum_probs=304.7
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
...|++++|++.+++.|.++||..|+|+|.++|+.++.++|+++++|||+|||++|++|++..+.... ..
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----------~~ 76 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT----------GQ 76 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT----------TC
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC----------CC
Confidence 35699999999999999999999999999999999999999999999999999999999998875432 23
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCC-CceEEEEeCCcchHHHHHHhcC-CCcEEEeCcHHHHHHHHhCCcCCCCceEE
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKK-GIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~l 265 (652)
+++||++||++|+.|+++.+..+.... ++++..++|+.....+...+.. .++|+|+||++|..++....+.+.++++|
T Consensus 77 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~v 156 (391)
T 1xti_A 77 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHF 156 (391)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEE
T ss_pred eeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEE
Confidence 469999999999999999999998765 7899999999988777666653 47999999999999999888889999999
Q ss_pred ecCcchhhhhc-CcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccC
Q 006272 266 VLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (652)
Q Consensus 266 ViDEah~~l~~-gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 344 (652)
||||||+++++ +|...+..++..++. ..|+++||||++..+..+...++ ..+..+.+... .......+.+.+..+
T Consensus 157 ViDEaH~~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 232 (391)
T 1xti_A 157 ILDECDKMLEQLDMRRDVQEIFRMTPH--EKQVMMFSATLSKEIRPVCRKFM-QDPMEIFVDDE-TKLTLHGLQQYYVKL 232 (391)
T ss_dssp EECSHHHHTSSHHHHHHHHHHHHTSCS--SSEEEEEESSCCSTHHHHHHHHC-SSCEEEECCCC-CCCCCTTCEEEEEEC
T ss_pred EEeCHHHHhhccchHHHHHHHHhhCCC--CceEEEEEeeCCHHHHHHHHHHc-CCCeEEEecCc-cccCcccceEEEEEc
Confidence 99999999884 788889999888876 78999999999999988888888 44554444322 223445677788888
Q ss_pred CchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccc
Q 006272 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (652)
Q Consensus 345 ~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~ 420 (652)
....+...+..++... ..+++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 233 ~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 311 (391)
T 1xti_A 233 KDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFG 311 (391)
T ss_dssp CGGGHHHHHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCS
T ss_pred CchhHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhh
Confidence 8888888888888876 67899999999999999999996 577899999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHH
Q 006272 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEEL 479 (652)
Q Consensus 421 ~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~ 479 (652)
+|||+|++++||+|++|.|+..|+||+||+||.|..+.+++++...+ ...+...+.+.
T Consensus 312 ~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~-~~~~~~~~~~~ 369 (391)
T 1xti_A 312 RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN-DAKILNDVQDR 369 (391)
T ss_dssp SCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHH-HHHHHHHHHHH
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccc-hHHHHHHHHHH
Confidence 99999999999999999999999999999999998776655544433 33333333333
No 8
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.6e-54 Score=461.18 Aligned_cols=358 Identities=30% Similarity=0.485 Sum_probs=292.2
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCC
Q 006272 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (652)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 185 (652)
.....|.++++++.+.+.|.++||..|+|+|.++|+.++.++|+++++|||||||++|++|+++.+....
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~---------- 106 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL---------- 106 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS----------
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC----------
Confidence 3346789999999999999999999999999999999999999999999999999999999999876432
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhc-CCCcEEEeCcHHHHHHHHhCCcCCCCceE
Q 006272 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 186 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~ 264 (652)
...++||++||++|+.|+++.+..++...++.+..++|+.....+...+. ..++|+|+||++|++++.++.+.+.++++
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~ 186 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKM 186 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCE
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcE
Confidence 23469999999999999999999999888999999999998888777766 67899999999999999998888999999
Q ss_pred EecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccC
Q 006272 265 RVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (652)
Q Consensus 265 lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 344 (652)
|||||||++++++|...+..++..++. ..|+++||||++..+..+...++ ..+..+... ........+.+.++.+
T Consensus 187 vViDEah~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~ 261 (414)
T 3eiq_A 187 FVLDEADEMLSRGFKDQIYDIFQKLNS--NTQVVLLSATMPSDVLEVTKKFM-RDPIRILVK--KEELTLEGIRQFYINV 261 (414)
T ss_dssp EEECSHHHHHHTTTHHHHHHHHTTSCT--TCEEEEECSCCCHHHHHHHTTTC-SSCEEECCC--CCCCCTTSCCEEEEEC
T ss_pred EEEECHHHhhccCcHHHHHHHHHhCCC--CCeEEEEEEecCHHHHHHHHHHc-CCCEEEEec--CCccCCCCceEEEEEe
Confidence 999999999999999999999999876 78999999999999988888887 344444332 2234445566666655
Q ss_pred Cch-hhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEcccc
Q 006272 345 SSS-ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (652)
Q Consensus 345 ~~~-~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~ 419 (652)
... .+...+..++... ..+++||||++++.++.++..|. .+..+||+|++.+|..+++.|++|..+|||||+++
T Consensus 262 ~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 340 (414)
T 3eiq_A 262 EREEWKLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 340 (414)
T ss_dssp SSSTTHHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSC
T ss_pred ChHHhHHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcc
Confidence 444 4777777777766 56799999999999999999986 68899999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHh
Q 006272 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLN 481 (652)
Q Consensus 420 ~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~ 481 (652)
++|||+|++++||+|++|.++.+|+||+||+||.|..+.++++ +.+.+...+. .+.++++
T Consensus 341 ~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~-~~~~~~~~~~-~~~~~~~ 400 (414)
T 3eiq_A 341 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINM-VTEEDKRTLR-DIETFYN 400 (414)
T ss_dssp C--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEE-ECSTHHHHHH-HHHHHTT
T ss_pred ccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEE-EcHHHHHHHH-HHHHHHc
Confidence 9999999999999999999999999999999999988765554 4444444333 3334433
No 9
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=5.2e-54 Score=478.05 Aligned_cols=358 Identities=29% Similarity=0.471 Sum_probs=288.2
Q ss_pred CcccccC----CCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccC
Q 006272 109 NAVSRFR----ISVPLREKLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182 (652)
Q Consensus 109 ~~~~~~~----l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l--~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~ 182 (652)
..|.++. |++.+++.|.++||..|+|+|.++|+.++ .++|+|++||||||||++|++|+++.+.......
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~---- 143 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS---- 143 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS----
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccc----
Confidence 3455553 99999999999999999999999999999 6789999999999999999999999987654221
Q ss_pred CCCCCCeEEEEeccHHHHHHHHHHHHHHhcC----CCceEEEEeCCcchHHHHHHh-cCCCcEEEeCcHHHHHHHHhC-C
Q 006272 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGA----VGLTSCCLYGGAPYHAQEFKL-KKGIDVVIGTPGRIKDHIERG-N 256 (652)
Q Consensus 183 ~~~~~~~~lil~PtreLa~q~~~~~~~~~~~----~~~~~~~~~gg~~~~~~~~~~-~~~~~Ilv~Tp~rl~~~l~~~-~ 256 (652)
...+++|||+||++||.|++++++.+... ..+.+..++|+.....+...+ ..+++|+|+||++|++++.+. .
T Consensus 144 --~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~ 221 (563)
T 3i5x_A 144 --QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSN 221 (563)
T ss_dssp --TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHH
T ss_pred --cCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccc
Confidence 23467999999999999999999987532 356788899999888777766 447999999999999998764 3
Q ss_pred cCCCCceEEecCcchhhhhcCcHHHHHHHHHhccC-----CCCceEEEEcccCChHHHHHHHHhcccCCeEEEEcc--Cc
Q 006272 257 IDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED-----ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG--NE 329 (652)
Q Consensus 257 ~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~-----~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~--~~ 329 (652)
..++++++|||||||+|++++|...+..|+..++. ...+|+++||||+++.+..++..++. .+..+.+.. ..
T Consensus 222 ~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~-~~~~~~~~~~~~~ 300 (563)
T 3i5x_A 222 KFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN-KKECLFLDTVDKN 300 (563)
T ss_dssp HHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCC-SSEEEEEESSCSS
T ss_pred cccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcC-CCceEEEeccCCC
Confidence 45788999999999999999999999999888743 22679999999999999888888874 444443322 22
Q ss_pred ccccCCCceEEEccCCch--hhhhhH---HHHHHhhCCCCeEEEEecchhHHHHHHHhcC-------CCcccccccchHH
Q 006272 330 KMKASTNVRHIVLPCSSS--ARSQVI---PDIIRCYSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQ 397 (652)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~--~~~~~l---~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~-------~~~~lh~~~~~~~ 397 (652)
.......+.+.+..+... .....+ ...+.....+.++||||+|+..|+.++..|. .+..+||+|++.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~ 380 (563)
T 3i5x_A 301 EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 380 (563)
T ss_dssp SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred CccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHH
Confidence 233344555555443321 222222 2333333567899999999999999999885 4677999999999
Q ss_pred HHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHH
Q 006272 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKS 474 (652)
Q Consensus 398 R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~ 474 (652)
|..+++.|++|+.+|||||+++++|||+|+|++||+|++|.++.+|+||+|||||+|..+.+++++ .+.+...+..
T Consensus 381 R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~-~~~e~~~~~~ 456 (563)
T 3i5x_A 381 RTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFI-CKDELPFVRE 456 (563)
T ss_dssp HHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEE-EGGGHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEE-chhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887665544 4455544443
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=5.5e-53 Score=451.66 Aligned_cols=356 Identities=29% Similarity=0.415 Sum_probs=297.2
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCC
Q 006272 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183 (652)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~--~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~ 183 (652)
.....|+++++++.+++.|.+.||..|+|+|.++|+.++.+ +++++++|||||||++|++|+++.+....
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-------- 93 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-------- 93 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS--------
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC--------
Confidence 34567999999999999999999999999999999999987 99999999999999999999999886532
Q ss_pred CCCCCeEEEEeccHHHHHHHHHHHHHHhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCcCCCC
Q 006272 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSS 261 (652)
Q Consensus 184 ~~~~~~~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~-~~~~l~~ 261 (652)
..+++||++||++|+.|+++.++.++... ++.+....++...... ....++|+|+||++|.+++.+ ..+.+.+
T Consensus 94 --~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~ 168 (412)
T 3fht_A 94 --KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKK 168 (412)
T ss_dssp --CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGG
T ss_pred --CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhh
Confidence 34579999999999999999999988754 6788888887665432 244689999999999999866 5667889
Q ss_pred ceEEecCcchhhhh-cCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEE
Q 006272 262 LKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340 (652)
Q Consensus 262 ~~~lViDEah~~l~-~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 340 (652)
+++|||||||++++ .+|...+..++..++. ..|+++||||++..+..+...++ ..+..+.+.. .......+.+.
T Consensus 169 ~~~iViDEah~~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~ 243 (412)
T 3fht_A 169 IKVFVLDEADVMIATQGHQDQSIRIQRMLPR--NCQMLLFSATFEDSVWKFAQKVV-PDPNVIKLKR--EEETLDTIKQY 243 (412)
T ss_dssp CCEEEEETHHHHHSTTTTHHHHHHHHHTSCT--TCEEEEEESCCCHHHHHHHHHHS-SSCEEECCCG--GGSSCTTEEEE
T ss_pred CcEEEEeCHHHHhhcCCcHHHHHHHHhhCCC--CceEEEEEeecCHHHHHHHHHhc-CCCeEEeecc--ccccccCceEE
Confidence 99999999999987 6888899999888876 78999999999999999988888 4555554432 23445566666
Q ss_pred EccCCc-hhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEE
Q 006272 341 VLPCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415 (652)
Q Consensus 341 ~~~~~~-~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLva 415 (652)
++.+.. ..+...+..++... ..+++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+.+||||
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 322 (412)
T 3fht_A 244 YVLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 322 (412)
T ss_dssp EEECSSHHHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred EEEcCChHHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEE
Confidence 665544 55677777777766 56799999999999999999996 6889999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEcCCC------CCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHh
Q 006272 416 TNVAARGLDINDVQLIIQCEPP------RDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLN 481 (652)
Q Consensus 416 T~~~~~Gldi~~v~~VI~~~~p------~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~ 481 (652)
|+++++|||+|++++||+|++| .+..+|+||+||+||.|..+.+++++ .+.....+...+++.++
T Consensus 323 T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~-~~~~~~~~~~~i~~~~~ 393 (412)
T 3fht_A 323 TNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV-DSKHSMNILNRIQEHFN 393 (412)
T ss_dssp CGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEE-CSHHHHHHHHHHHHHHT
T ss_pred cCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEE-cChhhHHHHHHHHHHHC
Confidence 9999999999999999999999 57799999999999999877665554 44433344444555444
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=9.2e-53 Score=447.22 Aligned_cols=353 Identities=27% Similarity=0.442 Sum_probs=298.7
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~--~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 185 (652)
..+|++++|++.+++.|.+.||..|+|+|.++++.++.+ +++++++|||||||++|++|+++.+....
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~---------- 73 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED---------- 73 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC----------
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC----------
Confidence 467999999999999999999999999999999999988 99999999999999999999998876432
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEE
Q 006272 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (652)
Q Consensus 186 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~l 265 (652)
.++++||++||++|+.|+++.++.++...++.+..++++..... ....++|+|+||++|.+++.+..+.+.++++|
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 149 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIF 149 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEE
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEE
Confidence 34579999999999999999999999888888888887754332 23368999999999999999888889999999
Q ss_pred ecCcchhhhh-cCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccC
Q 006272 266 VLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (652)
Q Consensus 266 ViDEah~~l~-~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 344 (652)
|+||||++++ .+|...+..+...++. ..|+++||||+++.+..+...++ ..+..+.... .......+.+.+..+
T Consensus 150 IiDEah~~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~ 224 (395)
T 3pey_A 150 VLDEADNMLDQQGLGDQCIRVKRFLPK--DTQLVLFSATFADAVRQYAKKIV-PNANTLELQT--NEVNVDAIKQLYMDC 224 (395)
T ss_dssp EEETHHHHHHSTTHHHHHHHHHHTSCT--TCEEEEEESCCCHHHHHHHHHHS-CSCEEECCCG--GGCSCTTEEEEEEEC
T ss_pred EEEChhhhcCccccHHHHHHHHHhCCC--CcEEEEEEecCCHHHHHHHHHhC-CCCeEEEccc--cccccccccEEEEEc
Confidence 9999999998 6888999999888876 78999999999999998888887 4444444332 234445566666655
Q ss_pred C-chhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEcccc
Q 006272 345 S-SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (652)
Q Consensus 345 ~-~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~ 419 (652)
. ...+...+..++... ..+++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 225 ~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 303 (395)
T 3pey_A 225 KNEADKFDVLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVL 303 (395)
T ss_dssp SSHHHHHHHHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGG
T ss_pred CchHHHHHHHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChh
Confidence 3 445666676666655 56899999999999999999986 68899999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEEcCCCC------CHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHh
Q 006272 420 ARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLN 481 (652)
Q Consensus 420 ~~Gldi~~v~~VI~~~~p~------s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~ 481 (652)
++|||+|++++||+||+|. |+.+|+||+||+||.|..+.+++++ .+.....+...+++.+.
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~-~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV-HDKNSFNILSAIQKYFG 370 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEE-CSHHHHHHHHHHHHHTT
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEE-echHHHHHHHHHHHHhC
Confidence 9999999999999999999 9999999999999999877665554 44444445555555554
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.7e-52 Score=436.03 Aligned_cols=342 Identities=35% Similarity=0.582 Sum_probs=298.6
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~-~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
...|++++|++.+++.|.+.||..|+|+|.++|+.++.+ +++++.+|||||||++|++|+++.+... .
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-----------~ 73 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-----------N 73 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-----------S
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-----------C
Confidence 356999999999999999999999999999999999988 7999999999999999999999877542 2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEe
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lV 266 (652)
+.++||++||++|+.|+++.+..+....++.+..++|+.....+...+. .++|+|+||++|.+++....+.+.++++||
T Consensus 74 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 152 (367)
T 1hv8_A 74 GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFI 152 (367)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEE
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEE
Confidence 3469999999999999999999999888899999999998877766665 589999999999999998888899999999
Q ss_pred cCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCc
Q 006272 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (652)
Q Consensus 267 iDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (652)
+||||++.+++|...+..++..++. ..++++||||++.........++ ..+..+.. .....+.+.++.+..
T Consensus 153 iDEah~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~ 223 (367)
T 1hv8_A 153 LDEADEMLNMGFIKDVEKILNACNK--DKRILLFSATMPREILNLAKKYM-GDYSFIKA------KINANIEQSYVEVNE 223 (367)
T ss_dssp EETHHHHHTTTTHHHHHHHHHTSCS--SCEEEEECSSCCHHHHHHHHHHC-CSEEEEEC------CSSSSSEEEEEECCG
T ss_pred EeCchHhhhhchHHHHHHHHHhCCC--CceEEEEeeccCHHHHHHHHHHc-CCCeEEEe------cCCCCceEEEEEeCh
Confidence 9999999999999999999988866 78999999999999888888887 34343332 223366777777788
Q ss_pred hhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccC
Q 006272 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (652)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 422 (652)
..+...+..++. ....++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 224 ~~~~~~l~~~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 301 (367)
T 1hv8_A 224 NERFEALCRLLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRG 301 (367)
T ss_dssp GGHHHHHHHHHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHH
T ss_pred HHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcC
Confidence 888877777776 356799999999999999999996 67899999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHH
Q 006272 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFK 473 (652)
Q Consensus 423 ldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~ 473 (652)
+|+|++++||+|++|.|+.+|+||+||+||.|..+.+++++ .+.+...+.
T Consensus 302 id~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~-~~~~~~~~~ 351 (367)
T 1hv8_A 302 IDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISII-NRREYKKLR 351 (367)
T ss_dssp CCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEE-CTTSHHHHH
T ss_pred CCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEE-cHHHHHHHH
Confidence 99999999999999999999999999999999887665554 444444433
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.1e-53 Score=450.88 Aligned_cols=344 Identities=28% Similarity=0.457 Sum_probs=183.1
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
...|++++|++.+.+.|..+||..|+|+|.++++.++.++++++++|||+|||++|++|+++.+... ..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~----------~~~ 89 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS----------VKA 89 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT----------CCS
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc----------CCC
Confidence 4569999999999999999999999999999999999999999999999999999999999887643 234
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEec
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lVi 267 (652)
+++||++||++|+.|+++.+..++...++.+..++|+.....+...+. .++|+|+||++|.+.+.+..+.+.++++||+
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 579999999999999999999999888999999999998776665554 5899999999999999988888899999999
Q ss_pred CcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCch
Q 006272 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (652)
Q Consensus 268 DEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (652)
||||++++++|...+..++..++. ..|+++||||++..+..+...++ ..+..+..... ......+.+.+..+...
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 243 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPP--TTQVVLLSATMPNDVLEVTTKFM-RNPVRILVKKD--ELTLEGIKQFYVNVEEE 243 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCT--TCEEEEECSSCCHHHHHHHHHHC-CSCEEEEECC--------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCC--CceEEEEEEecCHHHHHHHHHhc-CCCeEEEecCc--cccCCCceEEEEEcCch
Confidence 999999999999999999999876 78999999999999888888887 44554444322 22334455555544443
Q ss_pred h-hhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccC
Q 006272 348 A-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (652)
Q Consensus 348 ~-~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 422 (652)
. +...+..++... ..+++||||+++..++.++..|. .+..+||++++.+|..+++.|++|..+|||||+++++|
T Consensus 244 ~~~~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 322 (394)
T 1fuu_A 244 EYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 322 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcC
Confidence 3 556666666654 56799999999999999999997 58899999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcch
Q 006272 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVI 469 (652)
Q Consensus 423 ldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~ 469 (652)
||+|++++||+|++|.++.+|+||+||+||.|..+.+++++ .+.+.
T Consensus 323 ldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~-~~~~~ 368 (394)
T 1fuu_A 323 IDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV-TNEDV 368 (394)
T ss_dssp -----------------------------------------------
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEE-chhHH
Confidence 99999999999999999999999999999999887665544 44433
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.9e-51 Score=427.31 Aligned_cols=321 Identities=35% Similarity=0.603 Sum_probs=278.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEec
Q 006272 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (652)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 195 (652)
|++.+.+.|.++||..|+|+|.++++.+++++++++++|||+|||++|++|+++. +.++||++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----------------~~~~liv~P 64 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----------------GMKSLVVTP 64 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----------------TCCEEEECS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----------------cCCEEEEeC
Confidence 5789999999999999999999999999999999999999999999999999864 124899999
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhh
Q 006272 196 TRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275 (652)
Q Consensus 196 treLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~ 275 (652)
|++|+.|+++.++.++...++.+..++|+.....+...+.. ++|+|+||++|.+++....+.+.++++||+||||++.+
T Consensus 65 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 65 TRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc
Confidence 99999999999999998889999999999988877666654 89999999999999988888889999999999999999
Q ss_pred cCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHH
Q 006272 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355 (652)
Q Consensus 276 ~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (652)
++|...+..++..++. ..++++||||++..+......++. .+..+... ....++.+.++.+....+. ...
T Consensus 144 ~~~~~~~~~~~~~~~~--~~~~~~~SAT~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~ 213 (337)
T 2z0m_A 144 MGFIDDIKIILAQTSN--RKITGLFSATIPEEIRKVVKDFIT-NYEEIEAC-----IGLANVEHKFVHVKDDWRS--KVQ 213 (337)
T ss_dssp TTCHHHHHHHHHHCTT--CSEEEEEESCCCHHHHHHHHHHSC-SCEEEECS-----GGGGGEEEEEEECSSSSHH--HHH
T ss_pred cccHHHHHHHHhhCCc--ccEEEEEeCcCCHHHHHHHHHhcC-Cceeeecc-----cccCCceEEEEEeChHHHH--HHH
Confidence 9999999999998876 678999999999999888888873 44444221 2233455555544433222 123
Q ss_pred HHHhhCCCCeEEEEecchhHHHHHHHhcCCCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcC
Q 006272 356 IIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE 435 (652)
Q Consensus 356 ll~~~~~~~~~iVF~~s~~~~~~l~~~l~~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~ 435 (652)
.+.. ...+++||||++++.++.++..|..+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+|+
T Consensus 214 ~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 214 ALRE-NKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFD 292 (337)
T ss_dssp HHHT-CCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESS
T ss_pred HHHh-CCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEec
Confidence 3333 367899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhcccCCCcccceeecc
Q 006272 436 PPRDVEAYIHRSGRTGRAGVEAAETITQV 464 (652)
Q Consensus 436 ~p~s~~~y~qr~GR~gR~g~~~~~~i~~~ 464 (652)
+|.|+.+|+||+||+||.|..+.+.+++.
T Consensus 293 ~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 293 APQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp CCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred CCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 99999999999999999998877666655
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.3e-51 Score=451.48 Aligned_cols=336 Identities=20% Similarity=0.252 Sum_probs=268.2
Q ss_pred CCcccccCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
.+.+.+|++++.+.+.|++ +||..|+|+|.++|+.++.++|+++.+|||+|||++|++|++..
T Consensus 20 ~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~---------------- 83 (591)
T 2v1x_A 20 AWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS---------------- 83 (591)
T ss_dssp GGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS----------------
T ss_pred ccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc----------------
Confidence 3445678999999999998 69999999999999999999999999999999999999999742
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh------cCCCcEEEeCcHHHH------HHHHh
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL------KKGIDVVIGTPGRIK------DHIER 254 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~------~~~~~Ilv~Tp~rl~------~~l~~ 254 (652)
..++|||+|+++|+.|+++.+..+ ++.+..+.++.........+ ...++|+|+||++|. +++..
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~ 159 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK 159 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh
Confidence 126999999999999999999986 57888899888766554322 457899999999874 23332
Q ss_pred CCcCCCCceEEecCcchhhhhcC--cHHHHHHH--HHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcc
Q 006272 255 GNIDLSSLKFRVLDEADEMLRMG--FVEDVELI--LGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK 330 (652)
Q Consensus 255 ~~~~l~~~~~lViDEah~~l~~g--f~~~~~~i--~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~ 330 (652)
.+.+.++++|||||||++++|| |.+.+..+ +... .+.+++++||||+++.+...+..++......+....
T Consensus 160 -~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~--~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~--- 233 (591)
T 2v1x_A 160 -AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ--FPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS--- 233 (591)
T ss_dssp -HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH--CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC---
T ss_pred -hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHh--CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC---
Confidence 3457889999999999999998 87777652 2222 226899999999999998888888754433322221
Q ss_pred cccCCCceEEEccCC--chhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhh
Q 006272 331 MKASTNVRHIVLPCS--SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAG 404 (652)
Q Consensus 331 ~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~ 404 (652)
....++...+.... ...+...+..++.....+.++||||+|++.++.++..|. .+..|||+|++.+|..+++.
T Consensus 234 -~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~ 312 (591)
T 2v1x_A 234 -FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRK 312 (591)
T ss_dssp -CCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred -CCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHH
Confidence 22234443333322 223444555555444467899999999999999999996 68899999999999999999
Q ss_pred hcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHH
Q 006272 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPA 471 (652)
Q Consensus 405 f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~ 471 (652)
|++|+.+|||||+++++|||+|+|++||||++|.|+++|+||+|||||.|..+.++++ +...+...
T Consensus 313 F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l-~~~~D~~~ 378 (591)
T 2v1x_A 313 WSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY-YGFGDIFR 378 (591)
T ss_dssp HHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE-ECHHHHHH
T ss_pred HHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE-EChHHHHH
Confidence 9999999999999999999999999999999999999999999999999988776655 44444333
No 16
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-51 Score=475.33 Aligned_cols=329 Identities=20% Similarity=0.209 Sum_probs=258.0
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
.+..|..+++++.+...+...++..|+|+|.++|+.++.++|+|++||||||||++|++|+++.+..+
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g------------ 227 (1108)
T 3l9o_A 160 LPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK------------ 227 (1108)
T ss_dssp CSSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT------------
T ss_pred CCCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC------------
Confidence 34567777888877777777788889999999999999999999999999999999999999988543
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEe
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lV 266 (652)
.++||++||++|+.|+++.|..++. .+..++|+.... ..++|+|+||++|++++.++...+.++++||
T Consensus 228 -~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVV 295 (1108)
T 3l9o_A 228 -QRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVI 295 (1108)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEE
T ss_pred -CeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEE
Confidence 3699999999999999999998865 567788887643 4589999999999999999887789999999
Q ss_pred cCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHH--HHHHHHhcccCCeEEEEccCcccccCCCceEEEccC
Q 006272 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWV--KHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (652)
Q Consensus 267 iDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 344 (652)
|||||+|++++|...+..++..++. .+|+++||||+|... ..+...+.. .+..+.... .....+.++++..
T Consensus 296 IDEaH~l~d~~rg~~~e~ii~~l~~--~~qvl~lSATipn~~e~a~~l~~~~~-~~~~vi~~~----~rp~pl~~~~~~~ 368 (1108)
T 3l9o_A 296 FDEVHYMRDKERGVVWEETIILLPD--KVRYVFLSATIPNAMEFAEWICKIHS-QPCHIVYTN----FRPTPLQHYLFPA 368 (1108)
T ss_dssp EETGGGTTSHHHHHHHHHHHHHSCT--TSEEEEEECSCSSCHHHHHHHHHHTC-SCEEEEEEC----CCSSCEEEEEEET
T ss_pred EhhhhhccccchHHHHHHHHHhcCC--CceEEEEcCCCCCHHHHHHHHHhhcC-CCeEEEecC----CCcccceEEEeec
Confidence 9999999999999999999999986 789999999998753 344444442 222222211 1112223333211
Q ss_pred Cch-------------------------------------------------hh---hhhHHHHHHhh--CCCCeEEEEe
Q 006272 345 SSS-------------------------------------------------AR---SQVIPDIIRCY--SSGGRTIIFT 370 (652)
Q Consensus 345 ~~~-------------------------------------------------~~---~~~l~~ll~~~--~~~~~~iVF~ 370 (652)
... .+ ...+..++..+ ....++||||
T Consensus 369 ~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~ 448 (1108)
T 3l9o_A 369 HGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFS 448 (1108)
T ss_dssp TSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEe
Confidence 100 00 12222233222 2456999999
Q ss_pred cchhHHHHHHHhcCC-------------------------------------------CcccccccchHHHHHHHhhhcC
Q 006272 371 ETKESASQLADLLPG-------------------------------------------ARALHGDIQQSQREVTLAGFRS 407 (652)
Q Consensus 371 ~s~~~~~~l~~~l~~-------------------------------------------~~~lh~~~~~~~R~~~~~~f~~ 407 (652)
+++..|+.++..|.. +..+||+|++.+|..+++.|++
T Consensus 449 ~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~ 528 (1108)
T 3l9o_A 449 FSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQE 528 (1108)
T ss_dssp SCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhC
Confidence 999999999998863 6789999999999999999999
Q ss_pred CCceEEEEccccccCCCCCCccEEEEcCC--------CCCHHHHHHHhhhcccCC--CcccceeeccCC
Q 006272 408 GKFMTLVATNVAARGLDINDVQLIIQCEP--------PRDVEAYIHRSGRTGRAG--VEAAETITQVSD 466 (652)
Q Consensus 408 g~~~vLvaT~~~~~Gldi~~v~~VI~~~~--------p~s~~~y~qr~GR~gR~g--~~~~~~i~~~~~ 466 (652)
|.++|||||+++++|||+|++++||+++. |.|+.+|+||+|||||.| ..+.++++..+.
T Consensus 529 G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 529 GFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp TCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999999999999999999999998776 347888999999999999 455555544443
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.3e-50 Score=438.48 Aligned_cols=340 Identities=19% Similarity=0.270 Sum_probs=269.0
Q ss_pred CcccccCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 109 NAVSRFRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
..|++++|++.+.+.|++ +||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. .
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--~-------------- 65 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--N-------------- 65 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--S--------------
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--C--------------
Confidence 368899999999999998 89999999999999999999999999999999999999999842 1
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHH----HhcCCCcEEEeCcHHHHHHHHhCCcCCCCce
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF----KLKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~----~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~ 263 (652)
..+|||+|+++|+.|+.+.+..+ ++.+..+.++........ .....++|+|+||++|........+...+++
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 25899999999999999999875 577888888877654432 2245689999999999644333334457899
Q ss_pred EEecCcchhhhhcC--cHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEE
Q 006272 264 FRVLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341 (652)
Q Consensus 264 ~lViDEah~~l~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 341 (652)
+|||||||++++|| |.+.+..+.......+..++++||||+++.+...+...+......+..... ...++...+
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~----~r~~l~~~v 217 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF----DRPNIRYML 217 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCC----CCTTEEEEE
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCC----CCCceEEEE
Confidence 99999999999988 777766554333333368999999999998876665555333333333222 223444333
Q ss_pred ccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEcc
Q 006272 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (652)
Q Consensus 342 ~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~ 417 (652)
.. ...+...+..++... .+.++||||+|++.++.++..|. .+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 218 ~~--~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~ 294 (523)
T 1oyw_A 218 ME--KFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 294 (523)
T ss_dssp EE--CSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT
T ss_pred Ee--CCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 32 234445566666554 56799999999999999999997 678999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHH
Q 006272 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAA 476 (652)
Q Consensus 418 ~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~ 476 (652)
++++|||+|+|++||||++|.|+++|+||+|||||.|..+.+++ ++.+.+...+...+
T Consensus 295 a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l-~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML-FYDPADMAWLRRCL 352 (523)
T ss_dssp TSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE-EECHHHHHHHHHHH
T ss_pred hhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE-EeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998876655 44555444444333
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=7.2e-49 Score=419.80 Aligned_cols=310 Identities=19% Similarity=0.315 Sum_probs=248.8
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccH
Q 006272 119 PLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (652)
Q Consensus 119 ~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 197 (652)
.+.+.+++ +|| .|+|+|.++|+.++.++|+++++|||||||++|++|++..+.. ++++|||+||+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~-------------~~~~lil~Pt~ 74 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------------GKKSALVFPTV 74 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT-------------TCCEEEEESSH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC-------------CCEEEEEECCH
Confidence 34555655 466 7999999999999999999999999999999999998887632 34699999999
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEeCCcch---HHHHHHhcCC-CcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhh
Q 006272 198 ELAKQVHEDFDVYGGAVGLTSCCLYGGAPY---HAQEFKLKKG-IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (652)
Q Consensus 198 eLa~q~~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~ 273 (652)
+|+.|+++.++.++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++
T Consensus 75 ~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~ 151 (414)
T 3oiy_A 75 TLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAV 151 (414)
T ss_dssp HHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhh
Confidence 999999999999987 88999999999988 5555666555 99999999999998875 66789999999999865
Q ss_pred h----------h-cCcHHH-HHHHHHhcc---------CCCCceEEEEccc-CChHHH-HHHHHhcccCCeEEEEccCcc
Q 006272 274 L----------R-MGFVED-VELILGKVE---------DANKVQTLLFSAT-LPSWVK-HISTKFLKSDKKTIDLVGNEK 330 (652)
Q Consensus 274 l----------~-~gf~~~-~~~i~~~~~---------~~~~~q~l~~SAT-~~~~~~-~~~~~~~~~~~~~i~~~~~~~ 330 (652)
+ + ++|... +..++..++ .....|+++|||| .|..+. .+...++. +.+ ...
T Consensus 152 ~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-----~~~--~~~ 224 (414)
T 3oiy_A 152 LKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTV--GRL 224 (414)
T ss_dssp HHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-----CCS--SCC
T ss_pred hhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-----cCc--Ccc
Confidence 5 4 778888 788888775 1137899999999 565543 33333332 111 112
Q ss_pred cccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCc-ccccccchHHHHHHHhhh
Q 006272 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GAR-ALHGDIQQSQREVTLAGF 405 (652)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~-~lh~~~~~~~R~~~~~~f 405 (652)
.....++.+.++.+. +...+..++... +.++||||+++..|+.++..|. .+. .+||. +|. ++.|
T Consensus 225 ~~~~~~i~~~~~~~~---~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f 293 (414)
T 3oiy_A 225 VSVARNITHVRISSR---SKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDF 293 (414)
T ss_dssp CCCCCSEEEEEESSC---CHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHH
T ss_pred ccccccchheeeccC---HHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHH
Confidence 234456777776663 445566666664 4899999999999999999996 565 88885 444 9999
Q ss_pred cCCCceEEEE----ccccccCCCCCC-ccEEEEcCCC--CCHHHHHHHhhhcccCCC----cccceeec
Q 006272 406 RSGKFMTLVA----TNVAARGLDIND-VQLIIQCEPP--RDVEAYIHRSGRTGRAGV----EAAETITQ 463 (652)
Q Consensus 406 ~~g~~~vLva----T~~~~~Gldi~~-v~~VI~~~~p--~s~~~y~qr~GR~gR~g~----~~~~~i~~ 463 (652)
++|+++|||| |+++++|||+|+ |++||+||+| .++.+|+||+|||||.|. .+.++++.
T Consensus 294 ~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 294 KVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp HTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred hCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 9999999999 999999999999 9999999999 999999999999999984 45544444
No 19
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.1e-50 Score=436.14 Aligned_cols=351 Identities=26% Similarity=0.449 Sum_probs=246.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~--~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
.+...++++.+.+.|.+.||..|+++|.++|+.++.+ +++|+++|||||||++|++|+++.+.... .+
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~----------~~ 189 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV----------PK 189 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC----------CS
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC----------CC
Confidence 3555678899999999999999999999999999988 99999999999999999999999886532 24
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEec
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lVi 267 (652)
+++|||+|+++|+.|+++.++.++...++.+...+++..... ....++|+|+||++|.+++.+..+.+.++++|||
T Consensus 190 ~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 190 PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 579999999999999999999998877777766666543322 2346899999999999999988888999999999
Q ss_pred Ccchhhhh-cCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccC-C
Q 006272 268 DEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC-S 345 (652)
Q Consensus 268 DEah~~l~-~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~ 345 (652)
||||++.+ .+|...+..++..++. ..|+++||||++..+..+...++ ..+..+.+... ......+.+.+..+ .
T Consensus 266 DEaH~~~~~~~~~~~~~~i~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~-~~~~~i~~~~~--~~~~~~~~~~~~~~~~ 340 (508)
T 3fho_A 266 DEADNMLDQQGLGDQSMRIKHLLPR--NTQIVLFSATFSERVEKYAERFA-PNANEIRLKTE--ELSVEGIKQLYMDCQS 340 (508)
T ss_dssp CCHHHHTTC--CHHHHHHHHHHSCT--TCEEEEEESCCSTHHHHHHHHHS-TTCEEECCCCC--C----CCCCEEEEC--
T ss_pred echhhhcccCCcHHHHHHHHHhCCc--CCeEEEEeCCCCHHHHHHHHHhc-CCCeEEEeccc--cCCcccceEEEEECCc
Confidence 99999988 6799999999999876 78999999999998988888887 44554444322 22333444444444 4
Q ss_pred chhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEcccccc
Q 006272 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (652)
Q Consensus 346 ~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 421 (652)
...+...+..++... ..+++||||+++..|+.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 341 ~~~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~ 419 (508)
T 3fho_A 341 EEHKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIAR 419 (508)
T ss_dssp CHHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC----
T ss_pred hHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhc
Confidence 455666676666655 56899999999999999999987 6889999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCC------CCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHh
Q 006272 422 GLDINDVQLIIQCEPP------RDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLN 481 (652)
Q Consensus 422 Gldi~~v~~VI~~~~p------~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~ 481 (652)
|||+|++++||+|++| .|+..|+||+||+||.|..+.+++++........+ ..+++.+.
T Consensus 420 GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~-~~i~~~~~ 484 (508)
T 3fho_A 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEM-NAIQEYFQ 484 (508)
T ss_dssp -CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSH-HHHHHHSC
T ss_pred CCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHH-HHHHHHHC
Confidence 9999999999999999 78999999999999999888777776655544333 33444444
No 20
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.2e-48 Score=426.45 Aligned_cols=323 Identities=19% Similarity=0.245 Sum_probs=249.8
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHH
Q 006272 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (652)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~ 205 (652)
.+|| .|||+|..++|.++.|+ |+.++||+|||++|++|++...+.+ +.++||+|||+||.|+++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g-------------~~vlVltptreLA~qd~e 142 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTG-------------KGVHVVTVNEYLASRDAE 142 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTS-------------SCEEEEESSHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcC-------------CCEEEEeCCHHHHHHHHH
Confidence 5799 99999999999999999 9999999999999999998544332 259999999999999999
Q ss_pred HHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHH-HHHHHhC------CcCCCCceEEecCcchhhh-hcC
Q 006272 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEML-RMG 277 (652)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~------~~~l~~~~~lViDEah~~l-~~g 277 (652)
++..+...+++++.+++||.+...+. ...+++|+|+||++| .++|... .+.++.+.++||||||+|| |.+
T Consensus 143 ~~~~l~~~lgl~v~~i~gg~~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea 220 (844)
T 1tf5_A 143 QMGKIFEFLGLTVGLNLNSMSKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA 220 (844)
T ss_dssp HHHHHHHHTTCCEEECCTTSCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTT
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcc
Confidence 99999999999999999998865443 334699999999999 6666543 4668899999999999998 664
Q ss_pred ---------------cHHHHHHHHHhccC-------CCCceEE-----------------EEcccCChHHHHH-----HH
Q 006272 278 ---------------FVEDVELILGKVED-------ANKVQTL-----------------LFSATLPSWVKHI-----ST 313 (652)
Q Consensus 278 ---------------f~~~~~~i~~~~~~-------~~~~q~l-----------------~~SAT~~~~~~~~-----~~ 313 (652)
|...+..|+..++. ....|++ +||||++.++..+ +.
T Consensus 221 ~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~ 300 (844)
T 1tf5_A 221 RTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAH 300 (844)
T ss_dssp TCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHH
T ss_pred ccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHH
Confidence 78899999999863 1356887 9999987544333 22
Q ss_pred HhcccCCeEEE------EccCc----------------------------ccccCCCce---------------------
Q 006272 314 KFLKSDKKTID------LVGNE----------------------------KMKASTNVR--------------------- 338 (652)
Q Consensus 314 ~~~~~~~~~i~------~~~~~----------------------------~~~~~~~~~--------------------- 338 (652)
.++..+...+. ++... ...+...+.
T Consensus 301 ~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te 380 (844)
T 1tf5_A 301 VAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTE 380 (844)
T ss_dssp HTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchh
Confidence 33333322221 00000 000000000
Q ss_pred --------------------------EEEccCCchhhhhhHHHHHHh-hCCCCeEEEEecchhHHHHHHHhcC----CCc
Q 006272 339 --------------------------HIVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP----GAR 387 (652)
Q Consensus 339 --------------------------~~~~~~~~~~~~~~l~~ll~~-~~~~~~~iVF~~s~~~~~~l~~~l~----~~~ 387 (652)
+.++.+....|...+..++.. +..+.++||||+|++.++.|+..|. .+.
T Consensus 381 ~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~ 460 (844)
T 1tf5_A 381 EEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQ 460 (844)
T ss_dssp HHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCE
T ss_pred HHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 002223456677777776654 3456789999999999999999997 577
Q ss_pred ccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCC--------CccEEEEcCCCCCHHHHHHHhhhcccCCCcccc
Q 006272 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN--------DVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAE 459 (652)
Q Consensus 388 ~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~--------~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~ 459 (652)
+|||++.+.+|..+...|+.| .|+||||+|+||+||+ ++.|||||++|.|.+.|+||+|||||+|.+|.+
T Consensus 461 vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 461 VLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp EECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred EeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 899999988888777777666 6999999999999999 788999999999999999999999999999877
Q ss_pred eeeccCCcc
Q 006272 460 TITQVSDSV 468 (652)
Q Consensus 460 ~i~~~~~~~ 468 (652)
..++...+.
T Consensus 539 ~~~vs~eD~ 547 (844)
T 1tf5_A 539 QFYLSMEDE 547 (844)
T ss_dssp EEEEETTSS
T ss_pred EEEecHHHH
Confidence 655544443
No 21
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.5e-45 Score=418.66 Aligned_cols=336 Identities=21% Similarity=0.294 Sum_probs=256.6
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
+..|++++|++.+.+.+.+.||..|+|+|.++|+. ++++++++++||||||||++|.+|+++.+...
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------ 74 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN------------ 74 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------------
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC------------
Confidence 35699999999999999999999999999999999 78999999999999999999999999887632
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEe
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lV 266 (652)
+.++||++|+|+||.|+++.++.+. ..++++..++|+...... .+ ..++|+|+||++|..++.++...++++++||
T Consensus 75 ~~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vI 150 (715)
T 2va8_A 75 GGKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFV 150 (715)
T ss_dssp CSEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEE
Confidence 2369999999999999999996554 358889999998765542 12 3689999999999999988776689999999
Q ss_pred cCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccc-------cCC--Cc
Q 006272 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMK-------AST--NV 337 (652)
Q Consensus 267 iDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~--~~ 337 (652)
|||||++.+..+...++.++..++ ++|+++||||+++. ..+.. ++.. ..+......... ... .+
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~---~~~ii~lSATl~n~-~~~~~-~l~~--~~~~~~~r~~~l~~~~~~~~~~~~~~ 223 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK---RRNLLALSATISNY-KQIAK-WLGA--EPVATNWRPVPLIEGVIYPERKKKEY 223 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH---TSEEEEEESCCTTH-HHHHH-HHTC--EEEECCCCSSCEEEEEEEECSSTTEE
T ss_pred EechhhcCCcccchHHHHHHHhcc---cCcEEEEcCCCCCH-HHHHH-HhCC--CccCCCCCCCCceEEEEecCCcccce
Confidence 999999988889999999998887 57999999999863 34433 4421 111111000000 000 00
Q ss_pred eEEEccCCchh---hhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC------------------------------
Q 006272 338 RHIVLPCSSSA---RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------------------------------ 384 (652)
Q Consensus 338 ~~~~~~~~~~~---~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~------------------------------ 384 (652)
...+....... ....+..+......++++||||++++.++.++..|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 303 (715)
T 2va8_A 224 NVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDE 303 (715)
T ss_dssp EEEETTSCEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHH
T ss_pred eeecCcchhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccc
Confidence 01111000000 012233333344567999999999999998887764
Q ss_pred ----------CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEE----cC-------CCCCHHHH
Q 006272 385 ----------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE-------PPRDVEAY 443 (652)
Q Consensus 385 ----------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~-------~p~s~~~y 443 (652)
.+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|
T Consensus 304 ~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~ 383 (715)
T 2va8_A 304 KELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEY 383 (715)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHH
T ss_pred cHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHH
Confidence 2678999999999999999999999999999999999999999999999 99 89999999
Q ss_pred HHHhhhcccCCC--cccceeeccCC
Q 006272 444 IHRSGRTGRAGV--EAAETITQVSD 466 (652)
Q Consensus 444 ~qr~GR~gR~g~--~~~~~i~~~~~ 466 (652)
+||+|||||.|. .|.++++....
T Consensus 384 ~Qr~GRaGR~g~~~~G~~~~l~~~~ 408 (715)
T 2va8_A 384 KQMSGRAGRPGFDQIGESIVVVRDK 408 (715)
T ss_dssp HHHHTTBCCTTTCSCEEEEEECSCG
T ss_pred HHHhhhcCCCCCCCCceEEEEeCCc
Confidence 999999999985 44444444333
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=8.5e-46 Score=411.84 Aligned_cols=325 Identities=20% Similarity=0.243 Sum_probs=198.4
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHH
Q 006272 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (652)
Q Consensus 128 g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 207 (652)
+..+|+|+|.++|+.++.++|+|+++|||||||++|++|+++.+..... ..++++|||+||++|+.|+++++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------~~~~~~lil~P~~~L~~q~~~~~ 75 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQKNVF 75 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc--------cCCCeEEEEeCCHHHHHHHHHHH
Confidence 4558999999999999999999999999999999999999999876432 22457999999999999999999
Q ss_pred HHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCc-CCCCceEEecCcchhhhhcCcHHHHH-HH
Q 006272 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFVEDVE-LI 285 (652)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~-~l~~~~~lViDEah~~l~~gf~~~~~-~i 285 (652)
..++...++.+..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++.++++...+. .+
T Consensus 76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~ 155 (556)
T 4a2p_A 76 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRY 155 (556)
T ss_dssp HHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHH
T ss_pred HHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHH
Confidence 99998889999999999987777667767799999999999999988877 79999999999999999887544432 22
Q ss_pred HHh-ccC-CCCceEEEEcccCChH--------HH---HHHHHhcccCCeEEEEccCcc-----cccCCCceEEEcc----
Q 006272 286 LGK-VED-ANKVQTLLFSATLPSW--------VK---HISTKFLKSDKKTIDLVGNEK-----MKASTNVRHIVLP---- 343 (652)
Q Consensus 286 ~~~-~~~-~~~~q~l~~SAT~~~~--------~~---~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~---- 343 (652)
+.. +.. .+.+|+++||||++.. .. .+... + +...+....... ...........+.
T Consensus 156 ~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~-l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (556)
T 4a2p_A 156 LEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSY-L--DIQAISTVRENIQELQRFMNKPEIDVRLVKRRIH 232 (556)
T ss_dssp HHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHH-H--TCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSC
T ss_pred HHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHh-c--CCeEecchhcchHHHHhcCCCCceEEEEcCCCcC
Confidence 222 111 2357999999998531 11 11111 1 111111110000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 006272 344 -------------------------------------------------------------------------------- 343 (652)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (652)
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (556)
T 4a2p_A 233 NPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN 312 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------CCchhhhhhHHHHHHhh---CCCCe
Q 006272 344 -------------------------------------------------------CSSSARSQVIPDIIRCY---SSGGR 365 (652)
Q Consensus 344 -------------------------------------------------------~~~~~~~~~l~~ll~~~---~~~~~ 365 (652)
.....|...|..++... ..+.+
T Consensus 313 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k 392 (556)
T 4a2p_A 313 DALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTR 392 (556)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCce
Confidence 00123444455555432 46789
Q ss_pred EEEEecchhHHHHHHHhcCC----------------CcccccccchHHHHHHHhhhcC-CCceEEEEccccccCCCCCCc
Q 006272 366 TIIFTETKESASQLADLLPG----------------ARALHGDIQQSQREVTLAGFRS-GKFMTLVATNVAARGLDINDV 428 (652)
Q Consensus 366 ~iVF~~s~~~~~~l~~~l~~----------------~~~lh~~~~~~~R~~~~~~f~~-g~~~vLvaT~~~~~Gldi~~v 428 (652)
+||||+++..++.|+..|.. ...+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|
T Consensus 393 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v 472 (556)
T 4a2p_A 393 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 472 (556)
T ss_dssp EEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------
T ss_pred EEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhC
Confidence 99999999999999999852 3456889999999999999999 999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccC
Q 006272 429 QLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVS 465 (652)
Q Consensus 429 ~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~ 465 (652)
++|||||+|+|+..|+||+|| ||. ..+.+++++..
T Consensus 473 ~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~ 507 (556)
T 4a2p_A 473 NLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSK 507 (556)
T ss_dssp CEEEEETCCSCHHHHHHC----------CCEEEEESC
T ss_pred CEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeC
Confidence 999999999999999999999 999 55555444333
No 23
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.8e-45 Score=430.20 Aligned_cols=278 Identities=17% Similarity=0.287 Sum_probs=228.8
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHH
Q 006272 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (652)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~ 205 (652)
..|| .|||+|.++|+.++.|+|++++||||||||++|++|++..+.. ++++|||+|||+||.|+++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-------------~~~~Lil~PtreLa~Q~~~ 139 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------------GKKSALVFPTVTLVKQTLE 139 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-------------TCCEEEEESSHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-------------CCeEEEEechHHHHHHHHH
Confidence 4688 6999999999999999999999999999999998888887733 3469999999999999999
Q ss_pred HHHHHhcCCCceEEEEeCCcch---HHHHHHhcCC-CcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchh---------
Q 006272 206 DFDVYGGAVGLTSCCLYGGAPY---HAQEFKLKKG-IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE--------- 272 (652)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~--------- 272 (652)
.++.++ ..++++..++|+.+. ..+...+..+ ++|+|+||++|++++.. +.+.++++|||||||+
T Consensus 140 ~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~D 216 (1104)
T 4ddu_A 140 RLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNID 216 (1104)
T ss_dssp HHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHH
T ss_pred HHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccch
Confidence 999987 778999999999988 6666777665 99999999999998875 6788999999999965
Q ss_pred -hhh-cCcHHH-HHHHHHhcc---------CCCCceEEEEccc-CChHHH-HHHHHhcccCCeEEEEccCcccccCCCce
Q 006272 273 -MLR-MGFVED-VELILGKVE---------DANKVQTLLFSAT-LPSWVK-HISTKFLKSDKKTIDLVGNEKMKASTNVR 338 (652)
Q Consensus 273 -~l~-~gf~~~-~~~i~~~~~---------~~~~~q~l~~SAT-~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 338 (652)
|++ +||..+ +..++..++ .....|+++|||| .|..+. .+...++. +.+. .......++.
T Consensus 217 r~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-----i~v~--~~~~~~~~i~ 289 (1104)
T 4ddu_A 217 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTVG--RLVSVARNIT 289 (1104)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-----CCCC--BCCCCCCCEE
T ss_pred hhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-----EEec--cCCCCcCCce
Confidence 555 898888 899998876 1127899999999 565544 23333332 1121 2234456778
Q ss_pred EEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCc-ccccccchHHHHHHHhhhcCCCceEE
Q 006272 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GAR-ALHGDIQQSQREVTLAGFRSGKFMTL 413 (652)
Q Consensus 339 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~-~lh~~~~~~~R~~~~~~f~~g~~~vL 413 (652)
+.++.+ .+...+..++... ++++||||+++..|+.++..|. .+. .+||. |.+ ++.|++|+++||
T Consensus 290 ~~~~~~---~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VL 358 (1104)
T 4ddu_A 290 HVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINIL 358 (1104)
T ss_dssp EEEESC---CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEE
T ss_pred eEEEec---CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEE
Confidence 888776 3455566677664 4899999999999999999986 566 88983 555 999999999999
Q ss_pred EE----ccccccCCCCCC-ccEEEEcCCCC
Q 006272 414 VA----TNVAARGLDIND-VQLIIQCEPPR 438 (652)
Q Consensus 414 va----T~~~~~Gldi~~-v~~VI~~~~p~ 438 (652)
|| |++++||||+|+ |++|||||+|.
T Consensus 359 Vatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 359 IGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp EEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred EEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 99 999999999999 99999999998
No 24
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=7.1e-46 Score=422.97 Aligned_cols=330 Identities=21% Similarity=0.298 Sum_probs=260.7
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCC
Q 006272 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (652)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (652)
.|++++|++.+.+.|.+.||..|+|+|.++|+. ++.++++++++|||||||++|.+|+++.+... +.
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------~~ 69 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ------------GG 69 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH------------CS
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC------------CC
Confidence 588999999999999999999999999999998 88999999999999999999999999887632 23
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecC
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViD 268 (652)
++||++|+++||.|+++.++.+.. .++++..++|+...... ....++|+|+||++|..++.+....++++++||||
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEE
Confidence 699999999999999999976554 58899999998765432 12368999999999999998876668899999999
Q ss_pred cchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEE-------
Q 006272 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV------- 341 (652)
Q Consensus 269 Eah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------- 341 (652)
|||++.++.+...+..++..++. .+|+++||||+++. ..+ ..++.. ..+.... .+..+...+
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~~--~~~ii~lSATl~n~-~~~-~~~l~~--~~~~~~~-----rp~~l~~~~~~~~~~~ 214 (720)
T 2zj8_A 146 EIHLIGSRDRGATLEVILAHMLG--KAQIIGLSATIGNP-EEL-AEWLNA--ELIVSDW-----RPVKLRRGVFYQGFVT 214 (720)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHBT--TBEEEEEECCCSCH-HHH-HHHTTE--EEEECCC-----CSSEEEEEEEETTEEE
T ss_pred CCcccCCCcccHHHHHHHHHhhc--CCeEEEEcCCcCCH-HHH-HHHhCC--cccCCCC-----CCCcceEEEEeCCeee
Confidence 99999988999999999999875 78999999999863 333 344421 1111110 001111111
Q ss_pred ccCC-chhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC------------------------------------
Q 006272 342 LPCS-SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------------------------------------ 384 (652)
Q Consensus 342 ~~~~-~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~------------------------------------ 384 (652)
+... .......+..+......++++||||++++.|+.++..|.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 294 (720)
T 2zj8_A 215 WEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR 294 (720)
T ss_dssp ETTSCEEECSSTTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHT
T ss_pred ccccchhhhhHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 1100 000111222233333467899999999999998887764
Q ss_pred -CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEE----cC----CCCCHHHHHHHhhhcccCCC
Q 006272 385 -GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE----PPRDVEAYIHRSGRTGRAGV 455 (652)
Q Consensus 385 -~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~----~p~s~~~y~qr~GR~gR~g~ 455 (652)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|+||+|||||.|.
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~ 374 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKY 374 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTT
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCC
Confidence 2778999999999999999999999999999999999999999999999 77 68999999999999999984
Q ss_pred --cccceeeccCC
Q 006272 456 --EAAETITQVSD 466 (652)
Q Consensus 456 --~~~~~i~~~~~ 466 (652)
.|.++++....
T Consensus 375 ~~~G~~~~l~~~~ 387 (720)
T 2zj8_A 375 DEVGEGIIVSTSD 387 (720)
T ss_dssp CSEEEEEEECSSS
T ss_pred CCCceEEEEecCc
Confidence 44444444333
No 25
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.8e-45 Score=403.23 Aligned_cols=319 Identities=20% Similarity=0.236 Sum_probs=222.0
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
+|. .|||+|..++|.++.|+ |+.++||||||++|++|++.....+ ++++||+|||+||.|++++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g-------------~~vlVltPTreLA~Q~~e~ 134 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTG-------------KGVHVVTVNDYLAQRDAEN 134 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTS-------------SCCEEEESSHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcC-------------CcEEEEcCCHHHHHHHHHH
Confidence 575 89999999999999998 9999999999999999998655432 2599999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHH-HHHHHhC------CcCCCCceEEecCcchhhh-hc--
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEML-RM-- 276 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~------~~~l~~~~~lViDEah~~l-~~-- 276 (652)
+..++..+++++.+++||.+.. .+.+..+++|+|+||++| .++|..+ .+.++++.++||||||+|| +.
T Consensus 135 ~~~l~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~ 212 (853)
T 2fsf_A 135 NRPLFEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEAR 212 (853)
T ss_dssp HHHHHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTT
T ss_pred HHHHHHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCc
Confidence 9999999999999999998865 334444699999999999 7888764 2667999999999999999 54
Q ss_pred -------------CcHHHHHHHHHhccCC------------------CCceEE------------------------EEc
Q 006272 277 -------------GFVEDVELILGKVEDA------------------NKVQTL------------------------LFS 301 (652)
Q Consensus 277 -------------gf~~~~~~i~~~~~~~------------------~~~q~l------------------------~~S 301 (652)
+|...+..|+..++.. ...|++ +||
T Consensus 213 tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfs 292 (853)
T 2fsf_A 213 TPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 292 (853)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred ccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccC
Confidence 3678888888888631 134543 899
Q ss_pred ccCChHHHHH-----HHHhcccCCe------------------------------------EEEEccCcccccCCCceE-
Q 006272 302 ATLPSWVKHI-----STKFLKSDKK------------------------------------TIDLVGNEKMKASTNVRH- 339 (652)
Q Consensus 302 AT~~~~~~~~-----~~~~~~~~~~------------------------------------~i~~~~~~~~~~~~~~~~- 339 (652)
||++..+..+ +..++..+.. .+.+... ..+...+.+
T Consensus 293 at~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e--~~tla~It~q 370 (853)
T 2fsf_A 293 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNE--NQTLASITFQ 370 (853)
T ss_dssp ----------------------------------------------------------------CCCC--CEEEEEEEHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceeccc--ccccceeehH
Confidence 9987533222 1111111110 0110000 000011110
Q ss_pred ----------------------------------------------EEccCCchhhhhhHHHHHHh-hCCCCeEEEEecc
Q 006272 340 ----------------------------------------------IVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTET 372 (652)
Q Consensus 340 ----------------------------------------------~~~~~~~~~~~~~l~~ll~~-~~~~~~~iVF~~s 372 (652)
.++.+....|...+..++.. ...+.++||||+|
T Consensus 371 nyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~s 450 (853)
T 2fsf_A 371 NYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTIS 450 (853)
T ss_dssp HHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred HHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 01234556778777777754 4466799999999
Q ss_pred hhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCC---------------------
Q 006272 373 KESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND--------------------- 427 (652)
Q Consensus 373 ~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~--------------------- 427 (652)
++.++.|+..|. .+.+|||++.+.++..+.+.|+.| .|+||||+|+||+||+.
T Consensus 451 ie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~ 528 (853)
T 2fsf_A 451 IEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEK 528 (853)
T ss_dssp HHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHH
Confidence 999999999997 678999999999998899999988 69999999999999997
Q ss_pred -----------c-----cEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCc
Q 006272 428 -----------V-----QLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDS 467 (652)
Q Consensus 428 -----------v-----~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~ 467 (652)
| .|||+|++|.|.+.|+||+|||||+|.+|....++..++
T Consensus 529 ~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 529 IKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 3 699999999999999999999999999987655544333
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=8.4e-46 Score=421.16 Aligned_cols=331 Identities=24% Similarity=0.331 Sum_probs=255.9
Q ss_pred cccccC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 110 AVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 110 ~~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
.|++++ |++.+.+.|++.||..|+|+|.++++.++++++++++||||||||++|.+|+++.+..+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------- 68 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG------------- 68 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT-------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------------
Confidence 477888 99999999999999999999999999999999999999999999999999999887642
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEec
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lVi 267 (652)
.++||++|+|+||.|+++.++.+. ..++++..++|+...... ....++|+|+||++|..++.+....++++++|||
T Consensus 69 ~~~l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 69 GKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 259999999999999999996554 358899999998765432 2236899999999999999887666889999999
Q ss_pred CcchhhhhcCcHHHHHHHHHhccC-CCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccC--
Q 006272 268 DEADEMLRMGFVEDVELILGKVED-ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC-- 344 (652)
Q Consensus 268 DEah~~l~~gf~~~~~~i~~~~~~-~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-- 344 (652)
||||++.++++...++.++..+.. .+.+|+++||||+++ ...+. .++. ...+..... +..+...+...
T Consensus 145 DE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~-~~l~--~~~~~~~~r-----~~~l~~~~~~~~~ 215 (702)
T 2p6r_A 145 DEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIA-EWLD--ADYYVSDWR-----PVPLVEGVLCEGT 215 (702)
T ss_dssp TTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHH-HHTT--CEEEECCCC-----SSCEEEEEECSSE
T ss_pred eeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHH-HHhC--CCcccCCCC-----CccceEEEeeCCe
Confidence 999999988888888888777642 126899999999986 34444 4442 122221111 11111111100
Q ss_pred ---Cc-h----hhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC--------------------------------
Q 006272 345 ---SS-S----ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-------------------------------- 384 (652)
Q Consensus 345 ---~~-~----~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~-------------------------------- 384 (652)
.. . .....+..+......++++||||++++.++.++..|.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 295 (702)
T 2p6r_A 216 LELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECV 295 (702)
T ss_dssp EEEEETTEEEEEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHH
T ss_pred eeccCcchhhhhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHH
Confidence 00 0 0011222333333467899999999999998887663
Q ss_pred --CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEE----cC---CCCCHHHHHHHhhhcccCCC
Q 006272 385 --GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE---PPRDVEAYIHRSGRTGRAGV 455 (652)
Q Consensus 385 --~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~---~p~s~~~y~qr~GR~gR~g~ 455 (652)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|+||+|||||.|.
T Consensus 296 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~ 375 (702)
T 2p6r_A 296 RKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGM 375 (702)
T ss_dssp HTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTT
T ss_pred hcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCC
Confidence 3788999999999999999999999999999999999999999999999 76 78999999999999999995
Q ss_pred --cccceeeccCCc
Q 006272 456 --EAAETITQVSDS 467 (652)
Q Consensus 456 --~~~~~i~~~~~~ 467 (652)
.|.+++ ++...
T Consensus 376 ~~~G~~~~-l~~~~ 388 (702)
T 2p6r_A 376 DERGEAII-IVGKR 388 (702)
T ss_dssp CSCEEEEE-ECCGG
T ss_pred CCCceEEE-EecCc
Confidence 344444 44433
No 27
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=9.8e-45 Score=403.15 Aligned_cols=327 Identities=20% Similarity=0.230 Sum_probs=222.3
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
+|+|+|.++|+.++.++|+|+++|||||||++|++|+++.+..... ..++++|||+||++|+.|+++++..+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------~~~~~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC--------GQKGKVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--------CCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999886532 22457999999999999999999999
Q ss_pred hcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCc-CCCCceEEecCcchhhhhcCcHHH-HHHHHHh
Q 006272 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFVED-VELILGK 288 (652)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~-~l~~~~~lViDEah~~l~~gf~~~-~~~i~~~ 288 (652)
+...++.+..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++.+.+.... +..++..
T Consensus 76 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 155 (555)
T 3tbk_A 76 FERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDH 155 (555)
T ss_dssp HHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHH
T ss_pred hccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHh
Confidence 98889999999999987777666767799999999999999988777 788999999999999988763332 2233332
Q ss_pred c-cC--CCCceEEEEcccCChH--------HHHHHHHhcccCCeEEEEccCc-----ccccCCCceEEEccC--------
Q 006272 289 V-ED--ANKVQTLLFSATLPSW--------VKHISTKFLKSDKKTIDLVGNE-----KMKASTNVRHIVLPC-------- 344 (652)
Q Consensus 289 ~-~~--~~~~q~l~~SAT~~~~--------~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~-------- 344 (652)
. .. ...+|+++||||++.. ...+.......+...+...... ............+..
T Consensus 156 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
T 3tbk_A 156 KLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKC 235 (555)
T ss_dssp HTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHH
T ss_pred hhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHH
Confidence 2 11 1357999999998542 1111111100111112111100 000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 006272 345 -------------------------------------------------------------------------------- 344 (652)
Q Consensus 345 -------------------------------------------------------------------------------- 344 (652)
T Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 315 (555)
T 3tbk_A 236 IISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALI 315 (555)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred ----------------------------------------------------CchhhhhhHHHHHHhh---CCCCeEEEE
Q 006272 345 ----------------------------------------------------SSSARSQVIPDIIRCY---SSGGRTIIF 369 (652)
Q Consensus 345 ----------------------------------------------------~~~~~~~~l~~ll~~~---~~~~~~iVF 369 (652)
....+...+..++... ....++|||
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF 395 (555)
T 3tbk_A 316 ISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILF 395 (555)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEE
Confidence 0123444445555432 356899999
Q ss_pred ecchhHHHHHHHhcC----------------CCcccccccchHHHHHHHhhhcC-CCceEEEEccccccCCCCCCccEEE
Q 006272 370 TETKESASQLADLLP----------------GARALHGDIQQSQREVTLAGFRS-GKFMTLVATNVAARGLDINDVQLII 432 (652)
Q Consensus 370 ~~s~~~~~~l~~~l~----------------~~~~lh~~~~~~~R~~~~~~f~~-g~~~vLvaT~~~~~Gldi~~v~~VI 432 (652)
|+++..++.|+..|. ....+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||
T Consensus 396 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI 475 (555)
T 3tbk_A 396 VKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVI 475 (555)
T ss_dssp CSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEE
T ss_pred eCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEE
Confidence 999999999999885 23456789999999999999999 9999999999999999999999999
Q ss_pred EcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcc
Q 006272 433 QCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSV 468 (652)
Q Consensus 433 ~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~ 468 (652)
|||+|+|+..|+||+|| ||. ..+.+ +.++.+..
T Consensus 476 ~~d~p~s~~~~~Qr~GR-gR~-~~g~~-~~l~~~~~ 508 (555)
T 3tbk_A 476 LYEYVGNVIKMIQTRGR-GRA-RDSKC-FLLTSSAD 508 (555)
T ss_dssp EESCCSSCCCEECSSCC-CTT-TSCEE-EEEESCHH
T ss_pred EeCCCCCHHHHHHhcCc-CcC-CCceE-EEEEcCCC
Confidence 99999999999999999 998 55444 44444443
No 28
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.9e-45 Score=419.67 Aligned_cols=338 Identities=19% Similarity=0.206 Sum_probs=212.7
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHH
Q 006272 121 REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (652)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa 200 (652)
...|..+||..|+|+|.++|+.++.++|+|+++|||||||++|++|+++.+..... ....++|||+||++|+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~~lvl~Pt~~L~ 74 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ--------GQKGKVVFFANQIPVY 74 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT--------TCCCCEEEECSSHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc--------CCCCeEEEEECCHHHH
Confidence 45677889999999999999999999999999999999999999999998865431 1234699999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCc-CCCCceEEecCcchhhhhcC-c
Q 006272 201 KQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMG-F 278 (652)
Q Consensus 201 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~-~l~~~~~lViDEah~~l~~g-f 278 (652)
.|++++++.++...++++..++|+.....+...+...++|+|+||++|.+++..+.+ .+.++++|||||||++.+.. +
T Consensus 75 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~ 154 (696)
T 2ykg_A 75 EQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY 154 (696)
T ss_dssp HHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHH
T ss_pred HHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccH
Confidence 999999999998789999999999887666666666799999999999999998776 78999999999999987655 2
Q ss_pred HHHHHHHHHh-cc--CCCCceEEEEcccCC-------hH-HHHHHHHhcccCCeEEEEc---------------------
Q 006272 279 VEDVELILGK-VE--DANKVQTLLFSATLP-------SW-VKHISTKFLKSDKKTIDLV--------------------- 326 (652)
Q Consensus 279 ~~~~~~i~~~-~~--~~~~~q~l~~SAT~~-------~~-~~~~~~~~~~~~~~~i~~~--------------------- 326 (652)
...+...+.. +. ....+++++||||+. .. +..+....-..+...+...
T Consensus 155 ~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~ 234 (696)
T 2ykg_A 155 NMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKV 234 (696)
T ss_dssp HHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEEC
T ss_pred HHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEec
Confidence 2222222222 10 113679999999986 11 1222111100000000000
Q ss_pred cCccc---------------------------------------------------------------------------
Q 006272 327 GNEKM--------------------------------------------------------------------------- 331 (652)
Q Consensus 327 ~~~~~--------------------------------------------------------------------------- 331 (652)
.....
T Consensus 235 ~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (696)
T 2ykg_A 235 ESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTS 314 (696)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHH
T ss_pred CcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Confidence 00000
Q ss_pred ---------------------------------ccCCCceEEEcc---------------C-CchhhhhhHHHHHHhh--
Q 006272 332 ---------------------------------KASTNVRHIVLP---------------C-SSSARSQVIPDIIRCY-- 360 (652)
Q Consensus 332 ---------------------------------~~~~~~~~~~~~---------------~-~~~~~~~~l~~ll~~~-- 360 (652)
.....+.+.++. + ....+...+..++...
T Consensus 315 ~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~ 394 (696)
T 2ykg_A 315 HLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYH 394 (696)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence 000000000000 0 1234555666666554
Q ss_pred -CCCCeEEEEecchhHHHHHHHhcC--------CCccc--------ccccchHHHHHHHhhhcC-CCceEEEEccccccC
Q 006272 361 -SSGGRTIIFTETKESASQLADLLP--------GARAL--------HGDIQQSQREVTLAGFRS-GKFMTLVATNVAARG 422 (652)
Q Consensus 361 -~~~~~~iVF~~s~~~~~~l~~~l~--------~~~~l--------h~~~~~~~R~~~~~~f~~-g~~~vLvaT~~~~~G 422 (652)
..+.++||||+++..++.|+..|. .+..+ |++|++.+|..+++.|++ |.++|||||+++++|
T Consensus 395 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~G 474 (696)
T 2ykg_A 395 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 474 (696)
T ss_dssp TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC
T ss_pred cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcC
Confidence 356799999999999999999885 34455 679999999999999998 999999999999999
Q ss_pred CCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcch
Q 006272 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVI 469 (652)
Q Consensus 423 ldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~ 469 (652)
||+|+|++||+||+|.|+++|+||+|| ||+ ..+.+ +.++.....
T Consensus 475 iDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~-~~l~~~~~~ 518 (696)
T 2ykg_A 475 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKC-FLLTSNAGV 518 (696)
T ss_dssp ---CCCSEEEEESCC--CCCC-----------CCCEE-EEEESCHHH
T ss_pred CcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceE-EEEecCCCH
Confidence 999999999999999999999999999 998 44444 444444433
No 29
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-43 Score=411.45 Aligned_cols=308 Identities=21% Similarity=0.244 Sum_probs=242.9
Q ss_pred HHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHH
Q 006272 125 KSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (652)
Q Consensus 125 ~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~ 204 (652)
..++|. |+|+|.++|+.++.++++++++|||||||++|.+|++..+..+ .++||++||++|+.|++
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g-------------~rvL~l~PtkaLa~Q~~ 146 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-------------QRVIYTSPIKALSNQKY 146 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT-------------CEEEEEESSHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccC-------------CeEEEECChHHHHHHHH
Confidence 345675 9999999999999999999999999999999999999887543 36999999999999999
Q ss_pred HHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHH
Q 006272 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (652)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~ 284 (652)
+.|..++. .+..++|+.... ..++|+|+||++|.+++.++...+.++++|||||||+|.++++...++.
T Consensus 147 ~~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~ 215 (1010)
T 2xgj_A 147 RELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEE 215 (1010)
T ss_dssp HHHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHH
T ss_pred HHHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHH
Confidence 99998764 577788887654 3589999999999999988878889999999999999999999999999
Q ss_pred HHHhccCCCCceEEEEcccCChHHH--HHHHHhcccCCeEEEEccCcccccCCCceEEEccCC---------chh-----
Q 006272 285 ILGKVEDANKVQTLLFSATLPSWVK--HISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS---------SSA----- 348 (652)
Q Consensus 285 i~~~~~~~~~~q~l~~SAT~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~----- 348 (652)
++..++. .+|+++||||+|+... ....... ..+..+.... ..+..+.++++... ...
T Consensus 216 il~~l~~--~~~il~LSATi~n~~e~a~~l~~~~-~~~~~vi~~~----~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (1010)
T 2xgj_A 216 TIILLPD--KVRYVFLSATIPNAMEFAEWICKIH-SQPCHIVYTN----FRPTPLQHYLFPAHGDGIYLVVDEKSTFREE 288 (1010)
T ss_dssp HHHHSCT--TCEEEEEECCCTTHHHHHHHHHHHH-TSCEEEEEEC----CCSSCEEEEEEETTSSCCEEEECTTCCBCHH
T ss_pred HHHhcCC--CCeEEEEcCCCCCHHHHHHHHHhhc-CCCeEEEecC----CCcccceEEEEecCCcceeeeeccccccchH
Confidence 9999976 7899999999987532 2222222 2222222211 11122333332211 000
Q ss_pred ------------------------------h--------hhhHHHHHHhhC--CCCeEEEEecchhHHHHHHHhcCC---
Q 006272 349 ------------------------------R--------SQVIPDIIRCYS--SGGRTIIFTETKESASQLADLLPG--- 385 (652)
Q Consensus 349 ------------------------------~--------~~~l~~ll~~~~--~~~~~iVF~~s~~~~~~l~~~l~~--- 385 (652)
+ ...+..++..+. ...++||||+++..|+.++..|..
T Consensus 289 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~ 368 (1010)
T 2xgj_A 289 NFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDF 368 (1010)
T ss_dssp HHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCC
Confidence 0 122233333221 345899999999999999988863
Q ss_pred ----------------------------------------CcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCC
Q 006272 386 ----------------------------------------ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425 (652)
Q Consensus 386 ----------------------------------------~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi 425 (652)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+
T Consensus 369 ~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDi 448 (1010)
T 2xgj_A 369 NSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNM 448 (1010)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTC
T ss_pred CChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCC
Confidence 5568999999999999999999999999999999999999
Q ss_pred CCccEEEE----cCC----CCCHHHHHHHhhhcccCCCc--ccceeecc
Q 006272 426 NDVQLIIQ----CEP----PRDVEAYIHRSGRTGRAGVE--AAETITQV 464 (652)
Q Consensus 426 ~~v~~VI~----~~~----p~s~~~y~qr~GR~gR~g~~--~~~~i~~~ 464 (652)
|++++||+ ||. |.|+.+|+||+|||||.|.+ |.++++..
T Consensus 449 P~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~ 497 (1010)
T 2xgj_A 449 PAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 497 (1010)
T ss_dssp CBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEEC
T ss_pred CCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEEC
Confidence 99999999 999 89999999999999999974 54444443
No 30
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.4e-44 Score=393.35 Aligned_cols=322 Identities=20% Similarity=0.243 Sum_probs=249.9
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHH
Q 006272 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (652)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~ 205 (652)
.+|+ .|||+|..++|.++.|+ |+.++||+|||++|.+|++...+.+ ..++||+||++||.|+++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g-------------~~v~VvTpTreLA~Qdae 170 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAG-------------NGVHIVTVNDYLAKRDSE 170 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTT-------------SCEEEEESSHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhC-------------CCeEEEeCCHHHHHHHHH
Confidence 4698 99999999999999998 9999999999999999997554432 249999999999999999
Q ss_pred HHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHH-HHHHHhC------CcCCCCceEEecCcchhhh-h--
Q 006272 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEML-R-- 275 (652)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~------~~~l~~~~~lViDEah~~l-~-- 275 (652)
++..+...+++++.+++||.+.... ....+++|+|+||++| .++|..+ .+.++.+.++||||||+|| |
T Consensus 171 ~m~~l~~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDea 248 (922)
T 1nkt_A 171 WMGRVHRFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEA 248 (922)
T ss_dssp HHHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGG
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcC
Confidence 9999999999999999999886533 3334599999999999 7887654 4668899999999999999 4
Q ss_pred -------------cCcHHHHHHHHHhccC-------CCCceEE-----------------EEcccCChHHHHH-----HH
Q 006272 276 -------------MGFVEDVELILGKVED-------ANKVQTL-----------------LFSATLPSWVKHI-----ST 313 (652)
Q Consensus 276 -------------~gf~~~~~~i~~~~~~-------~~~~q~l-----------------~~SAT~~~~~~~~-----~~ 313 (652)
++|...+..|+..++. ....|++ +||||++..+..+ +.
T Consensus 249 rtPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~ 328 (922)
T 1nkt_A 249 RTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAK 328 (922)
T ss_dssp GSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHH
T ss_pred ccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHH
Confidence 3588999999999972 1367888 9999988644332 22
Q ss_pred HhcccCCeEEE------EccCc----------------------------ccccCCCce---------------------
Q 006272 314 KFLKSDKKTID------LVGNE----------------------------KMKASTNVR--------------------- 338 (652)
Q Consensus 314 ~~~~~~~~~i~------~~~~~----------------------------~~~~~~~~~--------------------- 338 (652)
.++..+...+- ++... ...+...+.
T Consensus 329 ~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te 408 (922)
T 1nkt_A 329 ELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTE 408 (922)
T ss_dssp HHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhH
Confidence 23322221110 00000 000000000
Q ss_pred --------------------------EEEccCCchhhhhhHHHHHHh-hCCCCeEEEEecchhHHHHHHHhcC----CCc
Q 006272 339 --------------------------HIVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP----GAR 387 (652)
Q Consensus 339 --------------------------~~~~~~~~~~~~~~l~~ll~~-~~~~~~~iVF~~s~~~~~~l~~~l~----~~~ 387 (652)
..++.+....|...+...+.. ...+.++||||+|++.++.|+..|. .+.
T Consensus 409 ~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~ 488 (922)
T 1nkt_A 409 AAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHN 488 (922)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 001223455677777666643 3456789999999999999999997 678
Q ss_pred ccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCc---------------------------------------
Q 006272 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV--------------------------------------- 428 (652)
Q Consensus 388 ~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v--------------------------------------- 428 (652)
+|||++.+.++..+.+.|+.| .|+||||+++||+||+.+
T Consensus 489 vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (922)
T 1nkt_A 489 VLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEE 566 (922)
T ss_dssp EECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred EecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 999999888888888899888 699999999999999975
Q ss_pred -------------cEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCc
Q 006272 429 -------------QLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDS 467 (652)
Q Consensus 429 -------------~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~ 467 (652)
.|||+|+.|.|.+.|+||+|||||.|.+|....++..++
T Consensus 567 ~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD 618 (922)
T 1nkt_A 567 ASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGD 618 (922)
T ss_dssp TTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTS
T ss_pred HHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhH
Confidence 599999999999999999999999999987766554444
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=9.1e-45 Score=424.98 Aligned_cols=277 Identities=21% Similarity=0.292 Sum_probs=219.7
Q ss_pred HHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHH
Q 006272 125 KSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (652)
Q Consensus 125 ~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~ 204 (652)
..+||. | |+|.++|+.++.|+|+|++||||||||+ |++|++..+... ++++|||+||++||.|++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~------------~~~~lil~PtreLa~Q~~ 116 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK------------GKRCYVIFPTSLLVIQAA 116 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT------------SCCEEEEESCHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc------------CCeEEEEeccHHHHHHHH
Confidence 447999 9 9999999999999999999999999998 999999887642 346999999999999999
Q ss_pred HHHHHHhcCCCc----eEEEEeCCcchHHH---HHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC
Q 006272 205 EDFDVYGGAVGL----TSCCLYGGAPYHAQ---EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277 (652)
Q Consensus 205 ~~~~~~~~~~~~----~~~~~~gg~~~~~~---~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g 277 (652)
+.++.++...++ .+..++|+.+...+ ...+.. ++|+|+||++|++++.+ ++++++|||||||+|++
T Consensus 117 ~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~-- 189 (1054)
T 1gku_B 117 ETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK-- 189 (1054)
T ss_dssp HHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--
T ss_pred HHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--
Confidence 999999988888 89999999988764 344455 99999999999998775 67999999999999998
Q ss_pred cHHHHHHHHHhccC---------CCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchh
Q 006272 278 FVEDVELILGKVED---------ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348 (652)
Q Consensus 278 f~~~~~~i~~~~~~---------~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (652)
|...+..++..+.. ....|+++||||++.. ..+...++. .+..+.+. .......++.+.++. ..
T Consensus 190 ~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~-~~~~i~v~--~~~~~~~~i~~~~~~---~~ 262 (1054)
T 1gku_B 190 ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFR-QLLNFDIG--SSRITVRNVEDVAVN---DE 262 (1054)
T ss_dssp STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHH-HHHCCCCS--CCEECCCCEEEEEES---CC
T ss_pred ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhh-cceEEEcc--CcccCcCCceEEEec---hh
Confidence 45777777776631 1257899999999886 433333331 11112221 122334556666662 45
Q ss_pred hhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC---CCcccccccchHHHHHHHhhhcCCCceEEEE----cccccc
Q 006272 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVA----TNVAAR 421 (652)
Q Consensus 349 ~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~---~~~~lh~~~~~~~R~~~~~~f~~g~~~vLva----T~~~~~ 421 (652)
+...+..++... ++++||||+|+..|+.++..|. .+..+||++ ..+++.|++|+++|||| |+++++
T Consensus 263 k~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~r 335 (1054)
T 1gku_B 263 SISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVR 335 (1054)
T ss_dssp CTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------C
T ss_pred HHHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEe
Confidence 566777777655 5789999999999999999997 468899998 37889999999999999 999999
Q ss_pred CCCCCCc-cEEEEcCCC
Q 006272 422 GLDINDV-QLIIQCEPP 437 (652)
Q Consensus 422 Gldi~~v-~~VI~~~~p 437 (652)
|||+|+| ++|||||+|
T Consensus 336 GIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 336 GLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp CSCCTTTCCEEEEESCC
T ss_pred ccccCCcccEEEEeCCC
Confidence 9999996 999999999
No 32
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3.6e-44 Score=412.80 Aligned_cols=328 Identities=20% Similarity=0.249 Sum_probs=204.3
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHH
Q 006272 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (652)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~ 205 (652)
-+|+..|+|+|.++|+.++.++|+|+++|||||||++|++|+++.+..... ..+.++|||+||++|+.|+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~~Lvl~Pt~~L~~Q~~~ 314 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQKN 314 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--------cCCCeEEEEeCCHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999876431 224579999999999999999
Q ss_pred HHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCc-CCCCceEEecCcchhhhhcCcHHHH-H
Q 006272 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFVEDV-E 283 (652)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~-~l~~~~~lViDEah~~l~~gf~~~~-~ 283 (652)
+|+.++...++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++...+....+ .
T Consensus 315 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~ 394 (797)
T 4a2q_A 315 VFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (797)
T ss_dssp HHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHH
T ss_pred HHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHH
Confidence 9999998789999999999988777777777899999999999999988777 7889999999999999876643333 2
Q ss_pred HHHHhc-c-CCCCceEEEEcccCCh-----------HHHHHHHHhcccCCeEEEEccCcc-----cccCCCceEEEcc--
Q 006272 284 LILGKV-E-DANKVQTLLFSATLPS-----------WVKHISTKFLKSDKKTIDLVGNEK-----MKASTNVRHIVLP-- 343 (652)
Q Consensus 284 ~i~~~~-~-~~~~~q~l~~SAT~~~-----------~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~-- 343 (652)
.++... . ....+|+++||||++. .+..+... + +...+....... ...........+.
T Consensus 395 ~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~-L--~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~ 471 (797)
T 4a2q_A 395 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSY-L--DIQAISTVRENIQELQRFMNKPEIDVRLVKRR 471 (797)
T ss_dssp HHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHH-H--TCSEEECCCTTHHHHHHHSCCCCCEEEECCCC
T ss_pred HHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHh-c--CCcEEecccccHHHHHHhcCCCceEEEecCCC
Confidence 222221 1 1235799999999852 12221111 1 111111110000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 006272 344 -------------------------------------------------------------------------------- 343 (652)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (652)
T Consensus 472 ~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 551 (797)
T 4a2q_A 472 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 551 (797)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------------CCchhhhhhHHHHHHhh---CCC
Q 006272 344 ---------------------------------------------------------CSSSARSQVIPDIIRCY---SSG 363 (652)
Q Consensus 344 ---------------------------------------------------------~~~~~~~~~l~~ll~~~---~~~ 363 (652)
.....|...|..++... ..+
T Consensus 552 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~ 631 (797)
T 4a2q_A 552 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 631 (797)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCC
Confidence 00122444455555431 466
Q ss_pred CeEEEEecchhHHHHHHHhcC----------------CCcccccccchHHHHHHHhhhcC-CCceEEEEccccccCCCCC
Q 006272 364 GRTIIFTETKESASQLADLLP----------------GARALHGDIQQSQREVTLAGFRS-GKFMTLVATNVAARGLDIN 426 (652)
Q Consensus 364 ~~~iVF~~s~~~~~~l~~~l~----------------~~~~lh~~~~~~~R~~~~~~f~~-g~~~vLvaT~~~~~Gldi~ 426 (652)
.++||||+++..++.|+..|. ....+||+|++.+|..+++.|++ |.++|||||+++++|||+|
T Consensus 632 ~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp 711 (797)
T 4a2q_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711 (797)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------C
T ss_pred CeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCch
Confidence 899999999999999999884 34567899999999999999999 9999999999999999999
Q ss_pred CccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCc
Q 006272 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDS 467 (652)
Q Consensus 427 ~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~ 467 (652)
+|++|||||+|+|+..|+||+|| ||. ..+.++++ +...
T Consensus 712 ~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l-~~~~ 749 (797)
T 4a2q_A 712 QCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILV-TSKT 749 (797)
T ss_dssp CCSEEEEESCCSCHHHHHTC---------CCCEEEE-ECCH
T ss_pred hCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEE-EeCC
Confidence 99999999999999999999999 999 55555444 4443
No 33
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=7.7e-43 Score=404.91 Aligned_cols=301 Identities=20% Similarity=0.222 Sum_probs=233.5
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
++| .|+|+|.++|+.++.++|+++++|||||||++|++|+...+..+ .++||++||++|+.|+++.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g-------------~~vlvl~PtraLa~Q~~~~ 101 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM-------------TKTIYTSPIKALSNQKFRD 101 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT-------------CEEEEEESCGGGHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC-------------CeEEEEeCCHHHHHHHHHH
Confidence 455 48999999999999999999999999999999999998876542 3699999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHH
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~ 286 (652)
+..+. .++.+..++|+.... ..++|+|+||++|.+++......+.++++|||||||++.+++|...+..++
T Consensus 102 l~~~~--~~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii 172 (997)
T 4a4z_A 102 FKETF--DDVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVI 172 (997)
T ss_dssp HHTTC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHH
T ss_pred HHHHc--CCCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHH
Confidence 98865 367888899987644 348999999999999998888788999999999999999999999999999
Q ss_pred HhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEE-------------------------
Q 006272 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV------------------------- 341 (652)
Q Consensus 287 ~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------------------- 341 (652)
..++. .+|+|+||||+++.. .+...+.......+.+.... .....+.+++
T Consensus 173 ~~l~~--~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~--~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (997)
T 4a4z_A 173 IMLPQ--HVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTP--KRPVPLEINIWAKKELIPVINQNSEFLEANFRKHK 247 (997)
T ss_dssp HHSCT--TCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECS--SCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHH
T ss_pred Hhccc--CCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecC--CCCccceEEEecCCcchhcccchhhhhHHHHHHHH
Confidence 99976 789999999998654 33333221100111111000 0011111111
Q ss_pred --------------------------------------------------------------------ccCCchhhhhhH
Q 006272 342 --------------------------------------------------------------------LPCSSSARSQVI 353 (652)
Q Consensus 342 --------------------------------------------------------------------~~~~~~~~~~~l 353 (652)
..+........+
T Consensus 248 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (997)
T 4a4z_A 248 EILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEI 327 (997)
T ss_dssp HHHC-----------------------------------------------------------------CCCCTTHHHHH
T ss_pred HHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHH
Confidence 111122223334
Q ss_pred HHHHHhhCCCCeEEEEecchhHHHHHHHhcCC-------------------------------------------Ccccc
Q 006272 354 PDIIRCYSSGGRTIIFTETKESASQLADLLPG-------------------------------------------ARALH 390 (652)
Q Consensus 354 ~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~~-------------------------------------------~~~lh 390 (652)
...+... ...++||||+|+..|+.++..|.. +..+|
T Consensus 328 i~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H 406 (997)
T 4a4z_A 328 VNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHH 406 (997)
T ss_dssp HHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeec
Confidence 4444443 457999999999999999998852 57899
Q ss_pred cccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCC---------CHHHHHHHhhhcccCCCcc
Q 006272 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR---------DVEAYIHRSGRTGRAGVEA 457 (652)
Q Consensus 391 ~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~---------s~~~y~qr~GR~gR~g~~~ 457 (652)
|+|++.+|..+++.|++|.++|||||+++++|||+|+ ..||++++|. |+.+|+||+|||||.|.+.
T Consensus 407 ~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~ 481 (997)
T 4a4z_A 407 GGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDS 481 (997)
T ss_dssp TTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCS
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCc
Confidence 9999999999999999999999999999999999999 5555555555 9999999999999999443
No 34
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.2e-43 Score=408.79 Aligned_cols=332 Identities=20% Similarity=0.240 Sum_probs=202.0
Q ss_pred HHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHH
Q 006272 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (652)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~ 203 (652)
..-.|+..|+|+|.++|+.++.|+|+|+++|||||||++|++|+++.+..... ..+.++|||+||++|+.|+
T Consensus 241 ~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~vLvl~Pt~~L~~Q~ 312 (936)
T 4a2w_A 241 PPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQ 312 (936)
T ss_dssp -------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS--------SCCCCEEEECSSHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc--------cCCCeEEEEeCCHHHHHHH
Confidence 33457889999999999999999999999999999999999999988765421 1245699999999999999
Q ss_pred HHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCc-CCCCceEEecCcchhhhhcCcHHH-
Q 006272 204 HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFVED- 281 (652)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~-~l~~~~~lViDEah~~l~~gf~~~- 281 (652)
+++++.++...++++..++|+.....+...+..+++|+|+||++|.+++....+ .+.++++|||||||++...+....
T Consensus 313 ~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i 392 (936)
T 4a2w_A 313 KNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVL 392 (936)
T ss_dssp HHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred HHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHH
Confidence 999999988789999999999977766666666799999999999999988776 788999999999999987753322
Q ss_pred HHHHHHhc-c-CCCCceEEEEcccCCh-----------HHHHHHH------------------HhcccCCeEEEEccCcc
Q 006272 282 VELILGKV-E-DANKVQTLLFSATLPS-----------WVKHIST------------------KFLKSDKKTIDLVGNEK 330 (652)
Q Consensus 282 ~~~i~~~~-~-~~~~~q~l~~SAT~~~-----------~~~~~~~------------------~~~~~~~~~i~~~~~~~ 330 (652)
+..++... . ....+|+++||||++. .+..+.. .++..............
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 472 (936)
T 4a2w_A 393 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRI 472 (936)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCS
T ss_pred HHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEeccccc
Confidence 22333221 1 1235799999999852 1111111 11111111111100000
Q ss_pred ccc---------------------CCC---ceEEEc--------------------------------------------
Q 006272 331 MKA---------------------STN---VRHIVL-------------------------------------------- 342 (652)
Q Consensus 331 ~~~---------------------~~~---~~~~~~-------------------------------------------- 342 (652)
... ... +....+
T Consensus 473 ~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~ 552 (936)
T 4a2w_A 473 HNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 552 (936)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 000 000 000000
Q ss_pred -------------------------------------------------------cCCchhhhhhHHHHHHhh---CCCC
Q 006272 343 -------------------------------------------------------PCSSSARSQVIPDIIRCY---SSGG 364 (652)
Q Consensus 343 -------------------------------------------------------~~~~~~~~~~l~~ll~~~---~~~~ 364 (652)
......|...|..++... ..+.
T Consensus 553 ~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~ 632 (936)
T 4a2w_A 553 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 632 (936)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTC
T ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCC
Confidence 000122344445555442 3568
Q ss_pred eEEEEecchhHHHHHHHhcC----------------CCcccccccchHHHHHHHhhhcC-CCceEEEEccccccCCCCCC
Q 006272 365 RTIIFTETKESASQLADLLP----------------GARALHGDIQQSQREVTLAGFRS-GKFMTLVATNVAARGLDIND 427 (652)
Q Consensus 365 ~~iVF~~s~~~~~~l~~~l~----------------~~~~lh~~~~~~~R~~~~~~f~~-g~~~vLvaT~~~~~Gldi~~ 427 (652)
++||||+++..++.|+..|. ....+||+|++.+|..+++.|++ |.++|||||+++++|||+|+
T Consensus 633 rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~ 712 (936)
T 4a2w_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 712 (936)
T ss_dssp CEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCC
T ss_pred eEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchh
Confidence 99999999999999999885 23457999999999999999999 99999999999999999999
Q ss_pred ccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCC
Q 006272 428 VQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSD 466 (652)
Q Consensus 428 v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~ 466 (652)
|++|||||+|+|+..|+||+|| ||. ..+.++++ +..
T Consensus 713 v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~L-i~~ 748 (936)
T 4a2w_A 713 CNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILV-TSK 748 (936)
T ss_dssp CSEEEEESCCSCSHHHHCC---------CCCEEEE-ESC
T ss_pred CCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEE-EeC
Confidence 9999999999999999999999 999 45444444 444
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.8e-43 Score=401.97 Aligned_cols=316 Identities=21% Similarity=0.271 Sum_probs=220.4
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHH-HHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV-HEDFDV 209 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~-~~~~~~ 209 (652)
.|+|+|.++|+.++.++|+|+++|||+|||++|++|+++.+..... .....++|||+||++|+.|+ +++++.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-------~~~~~~vlvl~P~~~L~~Q~~~~~l~~ 79 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK-------ASEPGKVIVLVNKVLLVEQLFRKEFQP 79 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH-------HTCCCCBCCEESCSHHHHHHHHHTHHH
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-------cCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999988765321 01124589999999999999 999999
Q ss_pred HhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHH------HhCCcCCCCceEEecCcchhhhhcCcHHH-H
Q 006272 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI------ERGNIDLSSLKFRVLDEADEMLRMGFVED-V 282 (652)
Q Consensus 210 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l------~~~~~~l~~~~~lViDEah~~l~~gf~~~-~ 282 (652)
++.. ++.+..++|+.....+...+...++|+|+||++|.+++ ....+.+.++++|||||||++....+... +
T Consensus 80 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 80 FLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp HHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred HcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 8864 58899999998877666666678999999999999988 44557788999999999999865443222 2
Q ss_pred HHHHHhc----c-------CCCCceEEEEcccCChH-----------HHHHHHHhcc------------------cCCeE
Q 006272 283 ELILGKV----E-------DANKVQTLLFSATLPSW-----------VKHISTKFLK------------------SDKKT 322 (652)
Q Consensus 283 ~~i~~~~----~-------~~~~~q~l~~SAT~~~~-----------~~~~~~~~~~------------------~~~~~ 322 (652)
..++... . ..+.+++++||||++.. +..+...+.. .+...
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~ 238 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKK 238 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEE
T ss_pred HHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceE
Confidence 2222211 0 00257999999999862 1222111110 00011
Q ss_pred EEEccCcccc--------------------cCCCce--------------------------------------------
Q 006272 323 IDLVGNEKMK--------------------ASTNVR-------------------------------------------- 338 (652)
Q Consensus 323 i~~~~~~~~~--------------------~~~~~~-------------------------------------------- 338 (652)
+......... ......
T Consensus 239 ~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (699)
T 4gl2_A 239 FAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIR 318 (699)
T ss_dssp EEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1110000000 000000
Q ss_pred ----------------------------------------------------EEEcc-CCchhhhhhHHHHHHhh-C--C
Q 006272 339 ----------------------------------------------------HIVLP-CSSSARSQVIPDIIRCY-S--S 362 (652)
Q Consensus 339 ----------------------------------------------------~~~~~-~~~~~~~~~l~~ll~~~-~--~ 362 (652)
..... .....+...|..++... . .
T Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~ 398 (699)
T 4gl2_A 319 MIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTE 398 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCC
Confidence 00000 00112333344444332 1 2
Q ss_pred -CCeEEEEecchhHHHHHHHhcC----------CCcccccc--------cchHHHHHHHhhhcCCCceEEEEccccccCC
Q 006272 363 -GGRTIIFTETKESASQLADLLP----------GARALHGD--------IQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (652)
Q Consensus 363 -~~~~iVF~~s~~~~~~l~~~l~----------~~~~lh~~--------~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gl 423 (652)
+.++||||+++..++.|+..|. .+..+||+ |++.+|..+++.|++|+++|||||+++++||
T Consensus 399 ~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GI 478 (699)
T 4gl2_A 399 ESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGL 478 (699)
T ss_dssp SCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTS
T ss_pred CCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Confidence 6899999999999999999874 46689999 9999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHHHHHHHhhhcccCC
Q 006272 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (652)
Q Consensus 424 di~~v~~VI~~~~p~s~~~y~qr~GR~gR~g 454 (652)
|+|+|++|||||+|+|+.+|+||+||+||.|
T Consensus 479 Dip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 479 DIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp CCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred ccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 9999999999999999999999999987766
No 36
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-41 Score=370.44 Aligned_cols=319 Identities=22% Similarity=0.255 Sum_probs=237.4
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.|+|+|.++++.++.+ ++|+.+|||+|||++++++++..+... ..++|||+||++|+.|+++++.++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKY------------GGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHS------------CSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcC------------CCeEEEEECCHHHHHHHHHHHHHH
Confidence 6999999999999998 999999999999999999999887621 235999999999999999999998
Q ss_pred hcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhcc
Q 006272 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (652)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~ 290 (652)
.......+..++|+........ +...++|+|+||++|...+....+.+.++++|||||||++.+......+...+....
T Consensus 76 ~~~~~~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~ 154 (494)
T 1wp9_A 76 FNLPPEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA 154 (494)
T ss_dssp BCSCGGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC
T ss_pred hCcchhheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC
Confidence 7545568888888887665433 334589999999999999988888899999999999999986654455555554443
Q ss_pred CCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccc-----cCCCceEEEcc----------------------
Q 006272 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMK-----ASTNVRHIVLP---------------------- 343 (652)
Q Consensus 291 ~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~---------------------- 343 (652)
. ..++++||||++.....+...+-......+......... ...........
T Consensus 155 ~--~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (494)
T 1wp9_A 155 K--NPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKP 232 (494)
T ss_dssp S--SCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3 678999999997433222221111111111111100000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 006272 344 -------------------------------------------------------------------------------- 343 (652)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (652)
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 312 (494)
T 1wp9_A 233 LAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGS 312 (494)
T ss_dssp HHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhcccc
Confidence
Q ss_pred --------------------------CCchhhhhhHHHHHHhh---CCCCeEEEEecchhHHHHHHHhcC----CCcccc
Q 006272 344 --------------------------CSSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP----GARALH 390 (652)
Q Consensus 344 --------------------------~~~~~~~~~l~~ll~~~---~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh 390 (652)
.....+...+..++... ..+.++||||+++..++.++..|. .+..+|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~ 392 (494)
T 1wp9_A 313 TKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFV 392 (494)
T ss_dssp CHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEe
Confidence 02233445556666553 467899999999999999999997 567899
Q ss_pred c--------ccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceee
Q 006272 391 G--------DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETIT 462 (652)
Q Consensus 391 ~--------~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~ 462 (652)
| +|++.+|..+++.|++|.++|||||+++++|||+|++++||+||+|+++..|+||+||+||.|. +..+++
T Consensus 393 g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l 471 (494)
T 1wp9_A 393 GQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIIL 471 (494)
T ss_dssp CSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEE
T ss_pred ccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEE
Confidence 9 9999999999999999999999999999999999999999999999999999999999999997 544444
Q ss_pred ccCC
Q 006272 463 QVSD 466 (652)
Q Consensus 463 ~~~~ 466 (652)
+...
T Consensus 472 ~~~~ 475 (494)
T 1wp9_A 472 MAKG 475 (494)
T ss_dssp EETT
T ss_pred EecC
Confidence 4333
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.4e-41 Score=407.39 Aligned_cols=341 Identities=18% Similarity=0.211 Sum_probs=253.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhc-CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEe
Q 006272 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (652)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~-~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~ 194 (652)
|.+...+.|...+|..++|+|.++|+.++. ++|++++||||||||++|.+||++.+.... +.++||++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-----------~~kavyi~ 979 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-----------EGRCVYIT 979 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-----------TCCEEEEC
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-----------CCEEEEEc
Confidence 445677888888999999999999999975 578999999999999999999999987532 23599999
Q ss_pred ccHHHHHHHHHHHHH-HhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhC--CcCCCCceEEecCcch
Q 006272 195 PTRELAKQVHEDFDV-YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG--NIDLSSLKFRVLDEAD 271 (652)
Q Consensus 195 PtreLa~q~~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~--~~~l~~~~~lViDEah 271 (652)
|||+||.|+++.|.. ++...++++..++|+...+.. ....++|+|||||+|..++.+. ...++++++||+||+|
T Consensus 980 P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 980 PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG
T ss_pred ChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh
Confidence 999999999999975 666689999999998765433 2234899999999997777542 2347889999999999
Q ss_pred hhhhcCcHHHHHHHHHhcc-----CCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEc--cC
Q 006272 272 EMLRMGFVEDVELILGKVE-----DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL--PC 344 (652)
Q Consensus 272 ~~l~~gf~~~~~~i~~~~~-----~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~ 344 (652)
++.+. ....++.++..+. ...++|+|+||||+++. ..++. ++......+...... ..+..+...+. ..
T Consensus 1057 ~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~-WL~~~~~~~~~~~~~--~RPvpL~~~i~~~~~ 1131 (1724)
T 4f92_B 1057 LIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAH-WLGCSATSTFNFHPN--VRPVPLELHIQGFNI 1131 (1724)
T ss_dssp GGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHH-HHTCCSTTEEECCGG--GCSSCEEEEEEEECC
T ss_pred hcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHH-HhCCCCCCeEEeCCC--CCCCCeEEEEEeccC
Confidence 88764 5666666655442 12378999999999873 44444 443333222222211 11222333222 11
Q ss_pred Cc-hhh----hhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC-----------------------------------
Q 006272 345 SS-SAR----SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----------------------------------- 384 (652)
Q Consensus 345 ~~-~~~----~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----------------------------------- 384 (652)
.. ..+ ...+...+......+++||||+|+..|+.++..|.
T Consensus 1132 ~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~ 1211 (1724)
T 4f92_B 1132 SHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKET 1211 (1724)
T ss_dssp CSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHH
T ss_pred CCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHH
Confidence 11 111 12244555666678899999999999988775541
Q ss_pred ---CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEE----------cCCCCCHHHHHHHhhhcc
Q 006272 385 ---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----------CEPPRDVEAYIHRSGRTG 451 (652)
Q Consensus 385 ---~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----------~~~p~s~~~y~qr~GR~g 451 (652)
++..+|++|++.+|..+++.|++|.++|||||+++++|||+|++++||. ...|.++.+|+||+||||
T Consensus 1212 l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAG 1291 (1724)
T 4f92_B 1212 LLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHAN 1291 (1724)
T ss_dssp HHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBC
T ss_pred HhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhcccc
Confidence 4678999999999999999999999999999999999999999999993 334679999999999999
Q ss_pred cCCCcc-cceeeccCCcchHHHHHH
Q 006272 452 RAGVEA-AETITQVSDSVIPAFKSA 475 (652)
Q Consensus 452 R~g~~~-~~~i~~~~~~~~~~~~~~ 475 (652)
|.|.+. +.+++++.+.....+...
T Consensus 1292 R~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1292 RPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp CTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred CCCCCCceEEEEEecchHHHHHHHH
Confidence 999753 344555555555555544
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.8e-41 Score=379.75 Aligned_cols=314 Identities=23% Similarity=0.295 Sum_probs=236.0
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcC------CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEE
Q 006272 118 VPLREKLKSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191 (652)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~------~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~l 191 (652)
..+...+..++| .||++|.++|+.++.+ .++++++|||||||++|++|+++.+..+ .+++
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-------------~qvl 421 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-------------FQTA 421 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-------------SCEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-------------CeEE
Confidence 455566788999 8999999999999865 5999999999999999999999988643 3599
Q ss_pred EEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHH---HhcC-CCcEEEeCcHHHHHHHHhCCcCCCCceEEec
Q 006272 192 VLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KLKK-GIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (652)
Q Consensus 192 il~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~~~~-~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lVi 267 (652)
|++||++||.|+++.+..++...++++..++|+........ .+.. .++|+|+||+.|.+ .+.+.++++|||
T Consensus 422 vlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVI 496 (780)
T 1gm5_A 422 FMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVII 496 (780)
T ss_dssp EECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEE
T ss_pred EEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEe
Confidence 99999999999999999999888999999999988765433 3333 59999999998754 456889999999
Q ss_pred CcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCch
Q 006272 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (652)
Q Consensus 268 DEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (652)
||+|++. +.. ...+ ......+++++||||+++....+.. +...+...+.. .......+...++ ...
T Consensus 497 DEaHr~g---~~q--r~~l--~~~~~~~~vL~mSATp~p~tl~~~~-~g~~~~s~i~~----~p~~r~~i~~~~~--~~~ 562 (780)
T 1gm5_A 497 DEQHRFG---VKQ--REAL--MNKGKMVDTLVMSATPIPRSMALAF-YGDLDVTVIDE----MPPGRKEVQTMLV--PMD 562 (780)
T ss_dssp ESCCCC----------CCC--CSSSSCCCEEEEESSCCCHHHHHHH-TCCSSCEEECC----CCSSCCCCEECCC--CSS
T ss_pred cccchhh---HHH--HHHH--HHhCCCCCEEEEeCCCCHHHHHHHH-hCCcceeeeec----cCCCCcceEEEEe--ccc
Confidence 9999863 111 1111 1112368999999998765443322 11111111111 1111123333322 222
Q ss_pred hhhhhHHHHHHhhCCCCeEEEEecchh--------HHHHHHHhcC-------CCcccccccchHHHHHHHhhhcCCCceE
Q 006272 348 ARSQVIPDIIRCYSSGGRTIIFTETKE--------SASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMT 412 (652)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~iVF~~s~~--------~~~~l~~~l~-------~~~~lh~~~~~~~R~~~~~~f~~g~~~v 412 (652)
....++..+......+.+++|||++.+ .++.+++.|. .+..+||+|++.+|..+++.|++|+++|
T Consensus 563 ~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~I 642 (780)
T 1gm5_A 563 RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDI 642 (780)
T ss_dssp THHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSB
T ss_pred hHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeE
Confidence 233344444445567789999999764 4667776664 4778999999999999999999999999
Q ss_pred EEEccccccCCCCCCccEEEEcCCCC-CHHHHHHHhhhcccCCCcccceeecc
Q 006272 413 LVATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGVEAAETITQV 464 (652)
Q Consensus 413 LvaT~~~~~Gldi~~v~~VI~~~~p~-s~~~y~qr~GR~gR~g~~~~~~i~~~ 464 (652)
||||+++++|||+|++++||+|++|. +...|.||+||+||.|..+.++++..
T Consensus 643 LVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 643 LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred EEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 99999999999999999999999996 78999999999999998887766544
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5e-41 Score=405.95 Aligned_cols=338 Identities=19% Similarity=0.267 Sum_probs=247.4
Q ss_pred CCCCChHHHHHHHHHHh-cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 128 GIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 128 g~~~~~~~Q~~~i~~~l-~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
||.+|+++|.+++|.++ .++|++++||||||||++|.+|+++.+....... ......+.++|||+|+++||.|+++.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~--~~~~~~~~k~lyiaP~kALa~e~~~~ 153 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMD--GTINVDDFKIIYIAPMRSLVQEMVGS 153 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTT--SSCCTTSCEEEEECSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhcccc--ccccCCCCEEEEECCHHHHHHHHHHH
Confidence 89999999999999987 5789999999999999999999999987543211 11123456899999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCC--cCCCCceEEecCcchhhhhcCcHHHHHH
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~--~~l~~~~~lViDEah~~l~~gf~~~~~~ 284 (652)
|.+.....+++|..++|+.....+. ...++|+|+||+++..++.+.. ..++++++|||||+|.+-+ ..+..++.
T Consensus 154 l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~ 229 (1724)
T 4f92_B 154 FGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEA 229 (1724)
T ss_dssp HHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHH
T ss_pred HHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHH
Confidence 9988888899999999998765421 2458999999999865554432 2378899999999997754 56666666
Q ss_pred HHHhcc-----CCCCceEEEEcccCChHHHHHHHHhcccCC-eEEEEccCcccccCCCceEEEccCCchh---hh----h
Q 006272 285 ILGKVE-----DANKVQTLLFSATLPSWVKHISTKFLKSDK-KTIDLVGNEKMKASTNVRHIVLPCSSSA---RS----Q 351 (652)
Q Consensus 285 i~~~~~-----~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~ 351 (652)
++..+. ...++|+|+||||+|+. ..+ ..|+...+ ..+.+.... ..+..+.+.++...... .. .
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl~N~-~dv-A~wL~~~~~~~~~~~~~~--~RPvpL~~~~~~~~~~~~~~~~~~~~~ 305 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATLPNY-EDV-ATFLRVDPAKGLFYFDNS--FRPVPLEQTYVGITEKKAIKRFQIMNE 305 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSCTTH-HHH-HHHTTCCHHHHEEECCGG--GCSSCEEEECCEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEEEecccCCH-HHH-HHHhCCCCCCCeEEECCC--CccCccEEEEeccCCcchhhhhHHHHH
Confidence 654321 12378999999999873 334 34553221 122222211 22334555544332221 11 2
Q ss_pred hHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC-----------------------------------------CCcccc
Q 006272 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----------------------------------------GARALH 390 (652)
Q Consensus 352 ~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~-----------------------------------------~~~~lh 390 (652)
.+...+.....++++||||+|++.|+.++..|. ++.++|
T Consensus 306 ~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HH 385 (1724)
T 4f92_B 306 IVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHH 385 (1724)
T ss_dssp HHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEEC
T ss_pred HHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEc
Confidence 233334444466899999999999888776552 366799
Q ss_pred cccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEE----cC------CCCCHHHHHHHhhhcccCCCc-ccc
Q 006272 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE------PPRDVEAYIHRSGRTGRAGVE-AAE 459 (652)
Q Consensus 391 ~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~------~p~s~~~y~qr~GR~gR~g~~-~~~ 459 (652)
|+|++.+|..+.+.|++|.++|||||+++++|||+|++++||. |+ .|.++.+|.||+|||||.|.+ .+.
T Consensus 386 agL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~ 465 (1724)
T 4f92_B 386 AGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGE 465 (1724)
T ss_dssp SSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccE
Confidence 9999999999999999999999999999999999999999996 44 356899999999999999854 333
Q ss_pred eeeccCCcchHHHHHH
Q 006272 460 TITQVSDSVIPAFKSA 475 (652)
Q Consensus 460 ~i~~~~~~~~~~~~~~ 475 (652)
.|++...++...+...
T Consensus 466 ~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 466 GILITSHGELQYYLSL 481 (1724)
T ss_dssp EEEEEESTTCCHHHHH
T ss_pred EEEEecchhHHHHHHH
Confidence 4444555555555443
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2e-39 Score=381.81 Aligned_cols=319 Identities=21% Similarity=0.233 Sum_probs=248.1
Q ss_pred cCCCHHHHHHH-HHCCCCCChHHHHHHHHHHhc----CC--cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 114 FRISVPLREKL-KSKGIESLFPIQAMTFDMVLD----GS--DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 114 ~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~l~----~~--dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
++++....+.+ ..++|. +||+|.++|+.++. ++ |+|++++||||||++|+++++..+..+
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g------------ 652 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH------------ 652 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT------------
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC------------
Confidence 55667777666 456775 79999999999986 66 999999999999999999998776542
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHH---HhcC-CCcEEEeCcHHHHHHHHhCCcCCCCc
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KLKK-GIDVVIGTPGRIKDHIERGNIDLSSL 262 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~~~~-~~~Ilv~Tp~rl~~~l~~~~~~l~~~ 262 (652)
.++||++||++||.|+++.+..+....++++..+++......... .+.. .++|+|+||+.|. ..+.+.++
T Consensus 653 -~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l 726 (1151)
T 2eyq_A 653 -KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDL 726 (1151)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSE
T ss_pred -CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCcccccc
Confidence 369999999999999999999888777889998888766554432 3333 5999999997663 35678999
Q ss_pred eEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEc
Q 006272 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (652)
Q Consensus 263 ~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (652)
++|||||||++. .....++..+.. .+++++||||+++....+....+. + ..+... .......+..++.
T Consensus 727 ~lvIiDEaH~~g-----~~~~~~l~~l~~--~~~vl~lSATp~p~~l~~~~~~~~-~---~~~i~~-~~~~r~~i~~~~~ 794 (1151)
T 2eyq_A 727 GLLIVDEEHRFG-----VRHKERIKAMRA--NVDILTLTATPIPRTLNMAMSGMR-D---LSIIAT-PPARRLAVKTFVR 794 (1151)
T ss_dssp EEEEEESGGGSC-----HHHHHHHHHHHT--TSEEEEEESSCCCHHHHHHHTTTS-E---EEECCC-CCCBCBCEEEEEE
T ss_pred ceEEEechHhcC-----hHHHHHHHHhcC--CCCEEEEcCCCChhhHHHHHhcCC-C---ceEEec-CCCCccccEEEEe
Confidence 999999999952 334455555554 679999999987766655554441 1 222211 1112233444444
Q ss_pred cCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC------CCcccccccchHHHHHHHhhhcCCCceEEEEc
Q 006272 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (652)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT 416 (652)
.... ......++.....+++++|||++++.++.++..|. .+..+||+|++.+|+.+++.|++|+++|||||
T Consensus 795 ~~~~---~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT 871 (1151)
T 2eyq_A 795 EYDS---MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 871 (1151)
T ss_dssp ECCH---HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEES
T ss_pred cCCH---HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEC
Confidence 3322 33445555666678999999999999999998875 57789999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEcCC-CCCHHHHHHHhhhcccCCCcccceeeccCC
Q 006272 417 NVAARGLDINDVQLIIQCEP-PRDVEAYIHRSGRTGRAGVEAAETITQVSD 466 (652)
Q Consensus 417 ~~~~~Gldi~~v~~VI~~~~-p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~ 466 (652)
+++++|||+|++++||+++. +.++.+|+||+||+||.|..+.++++...+
T Consensus 872 ~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 872 TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp STTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999999999999998 569999999999999999888877665443
No 41
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3.6e-41 Score=362.08 Aligned_cols=282 Identities=18% Similarity=0.181 Sum_probs=207.0
Q ss_pred CCCCChHHHHHHHHHHhcCCcE-EEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 128 GIESLFPIQAMTFDMVLDGSDL-VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 128 g~~~~~~~Q~~~i~~~l~~~dv-l~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
|+..|+|+|+ +||.++.++++ ++++|||||||++|++|+++.+... ++++||++|||+||.|+++.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~------------~~~~lvl~Ptr~La~Q~~~~ 67 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR------------RLRTLILAPTRVVAAEMEEA 67 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc------------CCcEEEECCCHHHHHHHHHH
Confidence 6889999985 79999999887 9999999999999999999876542 24699999999999999998
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHH
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~ 286 (652)
+. ++.+......... ....+..|.++|++.|.+++... ..+.++++|||||||++ +..+...+..+.
T Consensus 68 l~------g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~ 134 (451)
T 2jlq_A 68 LR------GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYIS 134 (451)
T ss_dssp TT------TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHH
T ss_pred hc------Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHH
Confidence 74 2333221111100 12334679999999999888765 45889999999999987 544444444443
Q ss_pred HhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeE
Q 006272 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366 (652)
Q Consensus 287 ~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 366 (652)
.... ..++|+++||||+|..+.. +....+..+..... . + ......+...+.. ..+++
T Consensus 135 ~~~~-~~~~~~i~~SAT~~~~~~~----~~~~~~~~~~~~~~---~------------p-~~~~~~~~~~l~~--~~~~~ 191 (451)
T 2jlq_A 135 TRVE-MGEAAAIFMTATPPGSTDP----FPQSNSPIEDIERE---I------------P-ERSWNTGFDWITD--YQGKT 191 (451)
T ss_dssp HHHH-TTSCEEEEECSSCTTCCCS----SCCCSSCEEEEECC---C------------C-SSCCSSSCHHHHH--CCSCE
T ss_pred Hhhc-CCCceEEEEccCCCccchh----hhcCCCceEecCcc---C------------C-chhhHHHHHHHHh--CCCCE
Confidence 3322 2368999999999874432 12123333332110 0 0 0001112233333 35799
Q ss_pred EEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcC-------
Q 006272 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE------- 435 (652)
Q Consensus 367 iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~------- 435 (652)
||||+|+..|+.++..|. .+..+|+.+ +..+++.|++|+.+|||||+++++|||+|+ ++|||||
T Consensus 192 lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~ 266 (451)
T 2jlq_A 192 VWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVI 266 (451)
T ss_dssp EEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccc
Confidence 999999999999999997 456677755 467999999999999999999999999999 9999999
Q ss_pred -------------CCCCHHHHHHHhhhcccCCC-cccceeec
Q 006272 436 -------------PPRDVEAYIHRSGRTGRAGV-EAAETITQ 463 (652)
Q Consensus 436 -------------~p~s~~~y~qr~GR~gR~g~-~~~~~i~~ 463 (652)
+|.|.++|+||+|||||.|. .+.++++.
T Consensus 267 d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~ 308 (451)
T 2jlq_A 267 LTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS 308 (451)
T ss_dssp ECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred cccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEe
Confidence 99999999999999999998 55554443
No 42
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.1e-41 Score=376.73 Aligned_cols=297 Identities=16% Similarity=0.146 Sum_probs=218.9
Q ss_pred cCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEE
Q 006272 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (652)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 193 (652)
+++++.+.+.|... ...++|+|+.+++.+++++|+|++||||||||++|++|+++.+... ++++|||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~------------~~~vLvl 221 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR------------RLRTLIL 221 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT------------TCCEEEE
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC------------CCeEEEE
Confidence 45666665555443 4789999988999999999999999999999999999999988642 2469999
Q ss_pred eccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhh
Q 006272 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (652)
Q Consensus 194 ~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~ 273 (652)
+|||+||.|+++.+.. +.+. ..+.. .. .....+..|.++|.+.|...+... ..++++++|||||||+|
T Consensus 222 ~PtreLa~Qi~~~l~~------~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~ 289 (618)
T 2whx_A 222 APTRVVAAEMEEALRG------LPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT 289 (618)
T ss_dssp ESSHHHHHHHHHHTTT------SCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC
T ss_pred cChHHHHHHHHHHhcC------Ccee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC
Confidence 9999999999988762 2232 11111 00 011234567788888888777665 35899999999999998
Q ss_pred hhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhH
Q 006272 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353 (652)
Q Consensus 274 l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 353 (652)
+.+|...+..|+..++. .++|+++||||++..+.. +....+..+.+... .+......++
T Consensus 290 -~~~~~~~~~~i~~~l~~-~~~q~il~SAT~~~~~~~----~~~~~~~~~~v~~~---------------~~~~~~~~ll 348 (618)
T 2whx_A 290 -DPCSVAARGYISTRVEM-GEAAAIFMTATPPGSTDP----FPQSNSPIEDIERE---------------IPERSWNTGF 348 (618)
T ss_dssp -SHHHHHHHHHHHHHHHH-TSCEEEEECSSCTTCCCS----SCCCSSCEEEEECC---------------CCSSCCSSSC
T ss_pred -CccHHHHHHHHHHHhcc-cCccEEEEECCCchhhhh----hhccCCceeeeccc---------------CCHHHHHHHH
Confidence 77888888888888752 268999999999876432 22223333333211 0111111223
Q ss_pred HHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCcc
Q 006272 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429 (652)
Q Consensus 354 ~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~ 429 (652)
..+.. ..+++||||+|++.|+.++..|. .+..+||. +|.++++.|++|+.+||||||++++|||+| |+
T Consensus 349 ~~l~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~ 420 (618)
T 2whx_A 349 DWITD---YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AG 420 (618)
T ss_dssp HHHHH---CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CS
T ss_pred HHHHh---CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ce
Confidence 33332 36799999999999999999997 67788974 788899999999999999999999999997 99
Q ss_pred EE--------------------EEcCCCCCHHHHHHHhhhcccCCC-cccceeeccC
Q 006272 430 LI--------------------IQCEPPRDVEAYIHRSGRTGRAGV-EAAETITQVS 465 (652)
Q Consensus 430 ~V--------------------I~~~~p~s~~~y~qr~GR~gR~g~-~~~~~i~~~~ 465 (652)
+| |||++|.+.++|+||+|||||+|. .+.+ ++++.
T Consensus 421 ~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~a-i~l~~ 476 (618)
T 2whx_A 421 RVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQ-YVFSG 476 (618)
T ss_dssp EEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEE-EEECS
T ss_pred EEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeE-EEEcc
Confidence 88 777889999999999999999986 5544 44443
No 43
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=6.2e-40 Score=358.53 Aligned_cols=295 Identities=20% Similarity=0.196 Sum_probs=214.5
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.++++|.++++.+..++|++++||||||||++|.+|+++. +.++||++|||+||.|+++.+...
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----------------g~~vLVl~PTReLA~Qia~~l~~~ 280 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----------------GYKVLVLNPSVAATLGFGAYMSKA 280 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----------------TCCEEEEESCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----------------CCeEEEEcchHHHHHHHHHHHHHH
Confidence 4556666666777788999999999999999999998862 125999999999999999887655
Q ss_pred hcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhcc
Q 006272 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (652)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~ 290 (652)
. +..+...+|+.. +..+++|+|+||++| +.+..+.++++++||||||| +++.+|...+..|+..++
T Consensus 281 ~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~ 346 (666)
T 3o8b_A 281 H---GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAE 346 (666)
T ss_dssp H---SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTT
T ss_pred h---CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhh
Confidence 3 345566677654 456799999999998 45667888999999999997 558889999999999998
Q ss_pred CCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEe
Q 006272 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFT 370 (652)
Q Consensus 291 ~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~ 370 (652)
......+++||||++..+. ...+....+... ....+ ..+ .... . +. ....+++||||
T Consensus 347 ~~~~~llil~SAT~~~~i~-------~~~p~i~~v~~~----~~~~i-~~~-----~~~~-~----l~-~~~~~~vLVFv 403 (666)
T 3o8b_A 347 TAGARLVVLATATPPGSVT-------VPHPNIEEVALS----NTGEI-PFY-----GKAI-P----IE-AIRGGRHLIFC 403 (666)
T ss_dssp TTTCSEEEEEESSCTTCCC-------CCCTTEEEEECB----SCSSE-EET-----TEEE-C----GG-GSSSSEEEEEC
T ss_pred hcCCceEEEECCCCCcccc-------cCCcceEEEeec----ccchh-HHH-----Hhhh-h----hh-hccCCcEEEEe
Confidence 7443447888999987321 111111111100 00001 000 0000 0 11 12578999999
Q ss_pred cchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEE----------EcC-
Q 006272 371 ETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII----------QCE- 435 (652)
Q Consensus 371 ~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI----------~~~- 435 (652)
+|++.++.+++.|. .+..+||+|++.+ |.++..+||||||+++||||++ |++|| |||
T Consensus 404 ~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDy 475 (666)
T 3o8b_A 404 HSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSL 475 (666)
T ss_dssp SCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCC
T ss_pred CCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccc
Confidence 99999999999996 5789999999875 5566679999999999999997 99988 677
Q ss_pred ----------CCCCHHHHHHHhhhcccCCCcccceeeccCCcch-------HHHHHHHHHHHhccCCCHHH
Q 006272 436 ----------PPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVI-------PAFKSAAEELLNNSGLSAAE 489 (652)
Q Consensus 436 ----------~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 489 (652)
+|.+.++|+||+||||| |..+. +.++.+.+. ..+.+.+..-+........+
T Consensus 476 dP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~--i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~~l~~~~ 543 (666)
T 3o8b_A 476 DPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI--YRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAE 543 (666)
T ss_dssp SSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE--EEESCCCCBCSSBCCHHHHHHHHHHHHHTSCCCHHH
T ss_pred ccccccccccCcCCHHHHHHHhccCCC-CCCCE--EEEEecchhhcccccHHHHHHHhcCCcccccCCchH
Confidence 89999999999999999 88877 455444432 33444444445554444443
No 44
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.7e-41 Score=377.12 Aligned_cols=288 Identities=17% Similarity=0.186 Sum_probs=201.3
Q ss_pred HHHHCCCC-----CChHHHH-----HHHHHHh------cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 123 KLKSKGIE-----SLFPIQA-----MTFDMVL------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 123 ~l~~~g~~-----~~~~~Q~-----~~i~~~l------~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
.|...||. .|||+|+ ++||.++ .++|+|++||||||||++|++|+++.+...
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~------------ 269 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK------------ 269 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC------------
Confidence 44556777 8999999 9999988 899999999999999999999999887542
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEe
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lV 266 (652)
++++||++|||+||.|+++.+..+. +. ...+. .. .....+.-+-+.+.+.+...+... ..+.++++||
T Consensus 270 ~~~~lilaPTr~La~Q~~~~l~~~~----i~--~~~~~--l~---~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvV 337 (673)
T 2wv9_A 270 RLRTAVLAPTRVVAAEMAEALRGLP----VR--YLTPA--VQ---REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFV 337 (673)
T ss_dssp TCCEEEEESSHHHHHHHHHHTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEE
T ss_pred CCcEEEEccHHHHHHHHHHHHhcCC----ee--eeccc--cc---ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEE
Confidence 2469999999999999999887542 21 11110 00 000111223444445554444433 4689999999
Q ss_pred cCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCc
Q 006272 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (652)
Q Consensus 267 iDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (652)
|||||++ +..+...+..+...++. ..+|+++||||++..+..+ ......... .......
T Consensus 338 iDEaH~~-~~~~~~~~~~l~~~~~~-~~~~vl~~SAT~~~~i~~~----~~~~~~i~~---------------v~~~~~~ 396 (673)
T 2wv9_A 338 MDEAHFT-DPASIAARGYIATRVEA-GEAAAIFMTATPPGTSDPF----PDTNSPVHD---------------VSSEIPD 396 (673)
T ss_dssp EESTTCC-CHHHHHHHHHHHHHHHT-TSCEEEEECSSCTTCCCSS----CCCSSCEEE---------------EECCCCS
T ss_pred EeCCccc-CccHHHHHHHHHHhccc-cCCcEEEEcCCCChhhhhh----cccCCceEE---------------EeeecCH
Confidence 9999998 33333344444444431 3689999999998754321 111111111 1111111
Q ss_pred hhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccC
Q 006272 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (652)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 422 (652)
......+..+.. ..+++||||++++.++.++..|. .+..+|| .+|..+++.|++|+++|||||+++++|
T Consensus 397 ~~~~~~l~~l~~---~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~G 469 (673)
T 2wv9_A 397 RAWSSGFEWITD---YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMG 469 (673)
T ss_dssp SCCSSCCHHHHS---CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTT
T ss_pred HHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcc
Confidence 222223333322 46899999999999999999996 5778999 489999999999999999999999999
Q ss_pred CCCCCccEEEE--------------------cCCCCCHHHHHHHhhhcccC-CCcccceeec
Q 006272 423 LDINDVQLIIQ--------------------CEPPRDVEAYIHRSGRTGRA-GVEAAETITQ 463 (652)
Q Consensus 423 ldi~~v~~VI~--------------------~~~p~s~~~y~qr~GR~gR~-g~~~~~~i~~ 463 (652)
||+| +++||| |++|.+.++|+||+|||||. |..+.+++++
T Consensus 470 IDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 470 ANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp CCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred eeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 9999 999998 67999999999999999999 5666555553
No 45
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8.9e-39 Score=362.14 Aligned_cols=325 Identities=18% Similarity=0.180 Sum_probs=237.8
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l-~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
...|.++++++.+.+.|...+ ..|+++|+++|+.++ .+++++++||||||||+ ++|++-....... ..
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~--------~~ 139 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPH--------LE 139 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGG--------GG
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcccc--------CC
Confidence 457999999999999999998 789999999998877 55789999999999999 5665522111100 11
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHh-cCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEE
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~l 265 (652)
+.+++|++|+|+|+.|+++.+.... ...+..+........ .....++|+|+|||++.+++.... .+.++++|
T Consensus 140 g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~l 212 (773)
T 2xau_A 140 NTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMEDH-DLSRYSCI 212 (773)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHST-TCTTEEEE
T ss_pred CceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhCc-cccCCCEE
Confidence 3469999999999999998775443 222222221111110 112458999999999999887654 48999999
Q ss_pred ecCcchh-hhhcCc-HHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEcc
Q 006272 266 VLDEADE-MLRMGF-VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (652)
Q Consensus 266 ViDEah~-~l~~gf-~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 343 (652)
||||||. +++..+ ...+..+....+ ..|+++||||++.. . +..++ .....+.+.+. ...+.+++..
T Consensus 213 IlDEah~R~ld~d~~~~~l~~l~~~~~---~~~iIl~SAT~~~~--~-l~~~~-~~~~vi~v~gr-----~~pv~~~~~~ 280 (773)
T 2xau_A 213 ILDEAHERTLATDILMGLLKQVVKRRP---DLKIIIMSATLDAE--K-FQRYF-NDAPLLAVPGR-----TYPVELYYTP 280 (773)
T ss_dssp EECSGGGCCHHHHHHHHHHHHHHHHCT---TCEEEEEESCSCCH--H-HHHHT-TSCCEEECCCC-----CCCEEEECCS
T ss_pred EecCccccccchHHHHHHHHHHHHhCC---CceEEEEeccccHH--H-HHHHh-cCCCcccccCc-----ccceEEEEec
Confidence 9999996 665432 333444444432 57999999999753 3 34455 33444443322 2346666666
Q ss_pred CCchhhhh-hHHHHHHh--hCCCCeEEEEecchhHHHHHHHhcC---------------CCcccccccchHHHHHHHhhh
Q 006272 344 CSSSARSQ-VIPDIIRC--YSSGGRTIIFTETKESASQLADLLP---------------GARALHGDIQQSQREVTLAGF 405 (652)
Q Consensus 344 ~~~~~~~~-~l~~ll~~--~~~~~~~iVF~~s~~~~~~l~~~l~---------------~~~~lh~~~~~~~R~~~~~~f 405 (652)
....+... .+..++.. ....+++||||+++.+++.++..|. .+..+||+|++.+|..+++.|
T Consensus 281 ~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f 360 (773)
T 2xau_A 281 EFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPA 360 (773)
T ss_dssp SCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCC
T ss_pred CCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhc
Confidence 55544332 22222222 1257899999999999999998774 277899999999999999999
Q ss_pred c-----CCCceEEEEccccccCCCCCCccEEEEcCC------------------CCCHHHHHHHhhhcccCCCcccceee
Q 006272 406 R-----SGKFMTLVATNVAARGLDINDVQLIIQCEP------------------PRDVEAYIHRSGRTGRAGVEAAETIT 462 (652)
Q Consensus 406 ~-----~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~------------------p~s~~~y~qr~GR~gR~g~~~~~~i~ 462 (652)
+ +|..+|||||+++++|||+|+|++||++++ |.|.++|+||+|||||. ..|.++.+
T Consensus 361 ~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l 439 (773)
T 2xau_A 361 PESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRL 439 (773)
T ss_dssp CCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEES
T ss_pred ccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEE
Confidence 9 999999999999999999999999999888 89999999999999999 56555444
Q ss_pred c
Q 006272 463 Q 463 (652)
Q Consensus 463 ~ 463 (652)
+
T Consensus 440 ~ 440 (773)
T 2xau_A 440 Y 440 (773)
T ss_dssp S
T ss_pred e
Confidence 3
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.6e-39 Score=353.45 Aligned_cols=284 Identities=22% Similarity=0.276 Sum_probs=218.1
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.|+|+|.++++.++.++++++++|||+|||++|++++... . .++|||+||++|+.|++++|..+
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--~--------------~~~Lvl~P~~~L~~Q~~~~~~~~ 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--S--------------TPTLIVVPTLALAEQWKERLGIF 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--C--------------SCEEEEESSHHHHHHHHHHGGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--C--------------CCEEEEECCHHHHHHHHHHHHhC
Confidence 7999999999999999999999999999999999998764 1 14999999999999999999884
Q ss_pred hcCCCce-EEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhc
Q 006272 211 GGAVGLT-SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (652)
Q Consensus 211 ~~~~~~~-~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~ 289 (652)
++. +..+.|+... ..+|+|+||+.+...+.. ...++++|||||||++.+..|.. ++..+
T Consensus 157 ----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~ 216 (472)
T 2fwr_A 157 ----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS 216 (472)
T ss_dssp ----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC
T ss_pred ----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc
Confidence 567 7777776543 479999999999877652 12458999999999999877654 45555
Q ss_pred cCCCCceEEEEcccCCh-------------------HHHHHHHHhcccCCeE--EEEccCccc-----------------
Q 006272 290 EDANKVQTLLFSATLPS-------------------WVKHISTKFLKSDKKT--IDLVGNEKM----------------- 331 (652)
Q Consensus 290 ~~~~~~q~l~~SAT~~~-------------------~~~~~~~~~~~~~~~~--i~~~~~~~~----------------- 331 (652)
+ ..++++||||+.. ....+...++ ..+.. +.+......
T Consensus 217 ~---~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 292 (472)
T 2fwr_A 217 I---APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHL-AKYTIKRIFVPLAEDERVEYEKREKVYKQFLRA 292 (472)
T ss_dssp C---CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCC-CSEEECCEEECCCHHHHHHTTTTTHHHHSCSSS
T ss_pred C---CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcC-CCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3 4689999999862 1222222222 11111 111000000
Q ss_pred -----ccCCCceEEE---------------------ccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcCC
Q 006272 332 -----KASTNVRHIV---------------------LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG 385 (652)
Q Consensus 332 -----~~~~~~~~~~---------------------~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~~ 385 (652)
.....+.+++ +.+....+...+..++... .+.++||||+++..++.++..|.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~k~lvF~~~~~~~~~l~~~l~- 370 (472)
T 2fwr_A 293 RGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVFL- 370 (472)
T ss_dssp CCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHTT-
T ss_pred cCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHhC-
Confidence 0000000000 0122334556677777764 67899999999999999999994
Q ss_pred CcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCc
Q 006272 386 ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVE 456 (652)
Q Consensus 386 ~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~ 456 (652)
+..+||++++.+|..+++.|++|.++|||||+++++|||+|++++||+|++|+|+..|+||+||+||.|..
T Consensus 371 ~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 441 (472)
T 2fwr_A 371 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKG 441 (472)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTT
T ss_pred cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999954
No 47
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.7e-39 Score=355.10 Aligned_cols=304 Identities=16% Similarity=0.148 Sum_probs=227.1
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH
Q 006272 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (652)
Q Consensus 129 ~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 208 (652)
...|+|+|.++++.++.++++++++|||||||++|++|++..+.... .++|||+||++|+.|++++|.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------------~~vlvl~P~~~L~~Q~~~~~~ 178 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE------------GKILIIVPTTALTTQMADDFV 178 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS------------SEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC------------CeEEEEECcHHHHHHHHHHHH
Confidence 34799999999999999999999999999999999999988775321 269999999999999999999
Q ss_pred HHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHh
Q 006272 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (652)
Q Consensus 209 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~ 288 (652)
+++...++.+..++++.....+ +...++|+|+||+.|... ....+.++++|||||||++.. ..+..++..
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~ 248 (510)
T 2oca_A 179 DYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISG 248 (510)
T ss_dssp HTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGG
T ss_pred HhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHh
Confidence 9877677888999988776654 556799999999976543 334577899999999999874 567777777
Q ss_pred ccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCc----ccccCCCceEEEccC--------------------
Q 006272 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE----KMKASTNVRHIVLPC-------------------- 344 (652)
Q Consensus 289 ~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~-------------------- 344 (652)
+.. ..++++||||++..............+..+.+...+ .......+....+..
T Consensus 249 ~~~--~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (510)
T 2oca_A 249 LNN--CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKII 326 (510)
T ss_dssp CTT--CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHH
T ss_pred ccc--CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHH
Confidence 754 679999999997654221111100111111111100 000111111111111
Q ss_pred -CchhhhhhHHHHHHhh-CC-CCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEc-
Q 006272 345 -SSSARSQVIPDIIRCY-SS-GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT- 416 (652)
Q Consensus 345 -~~~~~~~~l~~ll~~~-~~-~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT- 416 (652)
....+...+..++... .. ..++||||+ ...++.|++.|. .+..+||+|++.+|..+++.|++|+.+|||||
T Consensus 327 ~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 327 TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASY 405 (510)
T ss_dssp HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEH
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 1112333344444432 22 345566666 888988999886 56899999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcc
Q 006272 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEA 457 (652)
Q Consensus 417 ~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~ 457 (652)
+++++|||+|++++||++++|.++..|+||+||+||.|..+
T Consensus 406 ~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~ 446 (510)
T 2oca_A 406 GVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSK 446 (510)
T ss_dssp HHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCC
T ss_pred ChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCC
Confidence 99999999999999999999999999999999999999775
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.1e-40 Score=356.70 Aligned_cols=270 Identities=19% Similarity=0.201 Sum_probs=185.6
Q ss_pred HHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEE
Q 006272 142 MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221 (652)
Q Consensus 142 ~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~ 221 (652)
++++++|++++||||||||++|++|+++.+... ++++||++||++||.|+++.+..+ .+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~------------~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~ 65 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR------------RLRTLVLAPTRVVLSEMKEAFHGL------DVKFH 65 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHHTTTS------CEEEE
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc------------CCeEEEEcchHHHHHHHHHHHhcC------CeEEe
Confidence 467899999999999999999999999977642 246999999999999999988643 22211
Q ss_pred eCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhC--------CcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCC
Q 006272 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG--------NIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293 (652)
Q Consensus 222 ~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~--------~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~ 293 (652)
.+.. -.|+||+++++++..+ ...+.++++|||||||++ +.+|...+..+...+. ..
T Consensus 66 ~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~-~~ 129 (440)
T 1yks_A 66 TQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR-AN 129 (440)
T ss_dssp SSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH-TT
T ss_pred cccc--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc-cC
Confidence 1110 0377777665444322 234889999999999998 4444444444444433 23
Q ss_pred CceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecch
Q 006272 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373 (652)
Q Consensus 294 ~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~ 373 (652)
++|+++||||+++.+..+.. .... +......++.......+..+.. .++++||||+++
T Consensus 130 ~~~~l~~SAT~~~~~~~~~~----~~~~---------------~~~~~~~~~~~~~~~~~~~l~~---~~~~~lVF~~s~ 187 (440)
T 1yks_A 130 ESATILMTATPPGTSDEFPH----SNGE---------------IEDVQTDIPSEPWNTGHDWILA---DKRPTAWFLPSI 187 (440)
T ss_dssp SCEEEEECSSCTTCCCSSCC----CSSC---------------EEEEECCCCSSCCSSSCHHHHH---CCSCEEEECSCH
T ss_pred CceEEEEeCCCCchhhhhhh----cCCC---------------eeEeeeccChHHHHHHHHHHHh---cCCCEEEEeCCH
Confidence 68999999999875432111 1111 1111112222222233333333 357999999999
Q ss_pred hHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEE----------------
Q 006272 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ---------------- 433 (652)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~---------------- 433 (652)
+.|+.++..|. .+..+|| .+|..+++.|++|+++|||||+++++|||+| +++|||
T Consensus 188 ~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~ 262 (440)
T 1yks_A 188 RAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKV 262 (440)
T ss_dssp HHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEE
T ss_pred HHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccce
Confidence 99999999986 6788999 4688999999999999999999999999999 999996
Q ss_pred ---cCCCCCHHHHHHHhhhcccC-CCcccceeec--cCCcchHHH
Q 006272 434 ---CEPPRDVEAYIHRSGRTGRA-GVEAAETITQ--VSDSVIPAF 472 (652)
Q Consensus 434 ---~~~p~s~~~y~qr~GR~gR~-g~~~~~~i~~--~~~~~~~~~ 472 (652)
|+.|.++++|+||+|||||. |..+.+++++ ..+.+...+
T Consensus 263 vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l 307 (440)
T 1yks_A 263 AIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHV 307 (440)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBH
T ss_pred eeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhh
Confidence 88999999999999999998 5666665554 244444433
No 49
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.5e-38 Score=320.90 Aligned_cols=203 Identities=30% Similarity=0.402 Sum_probs=180.6
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCC
Q 006272 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (652)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~--~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 184 (652)
....|.+++|++.+++.|.++||..|||+|.++||.++.+ +|++++||||||||++|++|+++.+...
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~---------- 159 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---------- 159 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT----------
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc----------
Confidence 3467999999999999999999999999999999999987 9999999999999999999999988653
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHHhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCcCCCCc
Q 006272 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSL 262 (652)
Q Consensus 185 ~~~~~~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~-~~~~l~~~ 262 (652)
...+++|||+|||+||.|+++.++.++... ++.+..++|+....... ...++|+|+||++|++++.+ +.+.++++
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 235679999999999999999999998764 68888888887764332 45689999999999999976 56788999
Q ss_pred eEEecCcchhhhh-cCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEE
Q 006272 263 KFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325 (652)
Q Consensus 263 ~~lViDEah~~l~-~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~ 325 (652)
++|||||||+|++ .+|...+..|+..++. .+|+++||||++..+..++..++ .++..|.+
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~~~--~~q~i~~SAT~~~~v~~~a~~~l-~~p~~i~~ 297 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPR--NCQMLLFSATFEDSVWKFAQKVV-PDPNVIKL 297 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTSCT--TCEEEEEESCCCHHHHHHHHHHS-SSCEEEEE
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHhCCC--CCEEEEEeccCCHHHHHHHHHHC-CCCeEEEe
Confidence 9999999999998 7899999999999876 78999999999999999999999 56777765
No 50
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.2e-37 Score=305.16 Aligned_cols=213 Identities=36% Similarity=0.582 Sum_probs=194.1
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCC
Q 006272 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (652)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 185 (652)
.....|.++++++.+++.|.+.||..|+|+|.++|+.++.++|+++++|||||||++|++|++..+....... ..
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~-----~~ 100 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE-----RG 100 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCC-----TT
T ss_pred CccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccc-----cC
Confidence 3446789999999999999999999999999999999999999999999999999999999999987543211 23
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEE
Q 006272 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (652)
Q Consensus 186 ~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~l 265 (652)
.++++|||+||++|+.|+++.++.++...++.+..++|+.....+...+..+++|+|+||++|.+++.+..+.+.++++|
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~l 180 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYL 180 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEE
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEE
Confidence 46689999999999999999999998888999999999999998888888889999999999999999888889999999
Q ss_pred ecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEc
Q 006272 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326 (652)
Q Consensus 266 ViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~ 326 (652)
||||||+|++++|...+..++..++. .+|+++||||+|+.+..++..++ .++..|.+.
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~~~~~--~~q~~~~SAT~~~~~~~~~~~~l-~~~~~i~~~ 238 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVDQIRP--DRQTLMWSATWPKEVRQLAEDFL-KDYIHINIG 238 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHTTSCS--SCEEEEEESCCCHHHHHHHHHHC-SSCEEEEEC
T ss_pred EEeCHHHHhhhCcHHHHHHHHHhCCc--cceEEEEEeecCHHHHHHHHHHC-CCCEEEEec
Confidence 99999999999999999999999976 78999999999999999999999 567777664
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=9e-38 Score=336.13 Aligned_cols=268 Identities=17% Similarity=0.189 Sum_probs=189.1
Q ss_pred HHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEE
Q 006272 140 FDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219 (652)
Q Consensus 140 i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~ 219 (652)
...+..++++|+++|||||||++|++|+++.+... ++++||++|||+||.|+++.+. ++.+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~------------~~~~lvl~Ptr~La~Q~~~~l~------g~~v~ 76 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ------------RLRTAVLAPTRVVAAEMAEALR------GLPVR 76 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT------------TCCEEEEECSHHHHHHHHHHTT------TSCEE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC------------CCcEEEECchHHHHHHHHHHhc------CceEe
Confidence 44566889999999999999999999999887632 2469999999999999999886 23332
Q ss_pred EEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchh-----hhhcCcHHHHHHHHHhccCCCC
Q 006272 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE-----MLRMGFVEDVELILGKVEDANK 294 (652)
Q Consensus 220 ~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~-----~l~~gf~~~~~~i~~~~~~~~~ 294 (652)
...+.... .-..+..+.++|.+.+...+... ..++++++|||||||+ ++.++|...+.. ...
T Consensus 77 ~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-------~~~ 143 (459)
T 2z83_A 77 YQTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-------LGE 143 (459)
T ss_dssp ECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-------TTS
T ss_pred EEeccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHhc-------cCC
Confidence 22211110 01234567889999888777654 4588999999999998 555555433221 136
Q ss_pred ceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchh
Q 006272 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKE 374 (652)
Q Consensus 295 ~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~ 374 (652)
+|+++||||++..+..+ .......+.+. ...+.. ....+..++.. ..+++||||+++.
T Consensus 144 ~~~il~SAT~~~~~~~~----~~~~~pi~~~~---------------~~~~~~-~~~~~~~~l~~--~~~~~LVF~~s~~ 201 (459)
T 2z83_A 144 AAAIFMTATPPGTTDPF----PDSNAPIHDLQ---------------DEIPDR-AWSSGYEWITE--YAGKTVWFVASVK 201 (459)
T ss_dssp CEEEEECSSCTTCCCSS----CCCSSCEEEEE---------------CCCCSS-CCSSCCHHHHH--CCSCEEEECSCHH
T ss_pred ccEEEEEcCCCcchhhh----ccCCCCeEEec---------------ccCCcc-hhHHHHHHHHh--cCCCEEEEeCChH
Confidence 89999999998754221 11111111110 001111 11122233333 3579999999999
Q ss_pred HHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEE-----------------
Q 006272 375 SASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----------------- 433 (652)
Q Consensus 375 ~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----------------- 433 (652)
.|+.++..|. .+..+|+. +|..+++.|++|..+|||||+++++|||+|+ ++||+
T Consensus 202 ~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~ 276 (459)
T 2z83_A 202 MGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRV 276 (459)
T ss_dssp HHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEE
T ss_pred HHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccccccc
Confidence 9999999997 56678874 7888999999999999999999999999999 99999
Q ss_pred ---cCCCCCHHHHHHHhhhcccCCC-cccceeeccC
Q 006272 434 ---CEPPRDVEAYIHRSGRTGRAGV-EAAETITQVS 465 (652)
Q Consensus 434 ---~~~p~s~~~y~qr~GR~gR~g~-~~~~~i~~~~ 465 (652)
|++|.|..+|+||+|||||.|. .+.+++++..
T Consensus 277 ~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~ 312 (459)
T 2z83_A 277 ILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGA 312 (459)
T ss_dssp EECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcc
Confidence 7799999999999999999997 6655555444
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=5.4e-37 Score=327.36 Aligned_cols=267 Identities=16% Similarity=0.168 Sum_probs=191.2
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCC
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg 224 (652)
+++++|+++|||||||++|++|+++.+... +.++||++||++||.|+++.+. ++.+....+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~------------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~ 62 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK------------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPA 62 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC------------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecC
Confidence 478999999999999999999999666532 2369999999999999998775 3445544443
Q ss_pred cchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccC
Q 006272 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (652)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~ 304 (652)
.. ..-..+.-+.++|.+.+...+.. ...+.++++|||||||++ +..+......+..... ...+|+++||||+
T Consensus 63 ~~-----~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~-~~~~~~l~~SAT~ 134 (431)
T 2v6i_A 63 VQ-----SERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVS-MGDAGAIFMTATP 134 (431)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH-TTSCEEEEEESSC
T ss_pred cc-----ccCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhh-CCCCcEEEEeCCC
Confidence 21 11123456778899998877766 556899999999999997 4444444444444432 2368999999999
Q ss_pred ChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC
Q 006272 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP 384 (652)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~ 384 (652)
++.+.. +.......+. .....+.. ....+..++.. ..+++||||++++.++.++..|.
T Consensus 135 ~~~~~~----~~~~~~~i~~---------------~~~~~~~~-~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~ 192 (431)
T 2v6i_A 135 PGTTEA----FPPSNSPIID---------------EETRIPDK-AWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQ 192 (431)
T ss_dssp TTCCCS----SCCCSSCCEE---------------EECCCCSS-CCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHH
T ss_pred Ccchhh----hcCCCCceee---------------ccccCCHH-HHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHH
Confidence 874321 1101111111 10111111 11222333433 35799999999999999999986
Q ss_pred ----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccE-----------------EEEcCCCCCHHHH
Q 006272 385 ----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL-----------------IIQCEPPRDVEAY 443 (652)
Q Consensus 385 ----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~-----------------VI~~~~p~s~~~y 443 (652)
.+..+||+ +|..+++.|++|+++|||||+++++|||+| +.+ ||+++.|.+..+|
T Consensus 193 ~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~ 267 (431)
T 2v6i_A 193 KAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASA 267 (431)
T ss_dssp HTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHH
T ss_pred HcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHH
Confidence 67889987 578899999999999999999999999999 655 6788999999999
Q ss_pred HHHhhhcccCCCcccceeecc
Q 006272 444 IHRSGRTGRAGVEAAETITQV 464 (652)
Q Consensus 444 ~qr~GR~gR~g~~~~~~i~~~ 464 (652)
+||+||+||.|....+++++.
T Consensus 268 ~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 268 AQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHHTTSSCCTTCCCCEEEEC
T ss_pred HHhhhccCCCCCCCCeEEEEc
Confidence 999999999997666656554
No 53
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=293.54 Aligned_cols=210 Identities=35% Similarity=0.561 Sum_probs=178.7
Q ss_pred CCCCcccc-cCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCC
Q 006272 106 EHPNAVSR-FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (652)
Q Consensus 106 ~~~~~~~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 184 (652)
.....|.+ +++++.+++.|.+.||..|+|+|.++|+.+++++|+++++|||||||++|++|++..+....... ..
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~----~~ 91 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR----EQ 91 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------------
T ss_pred CChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh----hc
Confidence 33456777 89999999999999999999999999999999999999999999999999999999886532211 11
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceE
Q 006272 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 185 ~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~ 264 (652)
..++++||++||++|+.|++++++.+. ..++.+..++|+.....+...+..+++|+|+||++|.+++....+.++++++
T Consensus 92 ~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 92 RNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp -CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence 345679999999999999999999986 4678999999999988888888888999999999999999988888999999
Q ss_pred EecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEE
Q 006272 265 RVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323 (652)
Q Consensus 265 lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i 323 (652)
|||||||++++++|...+..++..++. +.|+++||||+|+.+..++..++ .++..|
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~l-~~p~~i 226 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRP--DRQTVMTSATWPDTVRQLALSYL-KDPMIV 226 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCS--SCEEEEEESCCCHHHHHHHHTTC-SSCEEE
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCc--CCeEEEEEeeCCHHHHHHHHHHC-CCCEEE
Confidence 999999999999999999999999976 78999999999999999999998 455444
No 54
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.5e-36 Score=296.55 Aligned_cols=204 Identities=36% Similarity=0.554 Sum_probs=186.2
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
...|+++++++.+.+.|.++||..|+|+|.++|+.++.++|+++++|||||||++|++|+++.+.... ..
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~----------~~ 111 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP----------QR 111 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC----------CS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC----------CC
Confidence 35699999999999999999999999999999999999999999999999999999999999887542 24
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHh-CCcCCCCceEEe
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLKFRV 266 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~-~~~~l~~~~~lV 266 (652)
+++||++||++|+.|+++.++.++...++.+..++|+.....+...+..+++|+|+||++|.+++.+ ..+.+.++++||
T Consensus 112 ~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lV 191 (249)
T 3ber_A 112 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLV 191 (249)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEE
Confidence 5799999999999999999999998889999999999998888888888899999999999999986 557789999999
Q ss_pred cCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEE
Q 006272 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324 (652)
Q Consensus 267 iDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~ 324 (652)
|||||++++++|...+..++..++. ..|+++||||++..+..++..++ .++..|.
T Consensus 192 iDEah~l~~~~~~~~l~~i~~~~~~--~~~~l~~SAT~~~~v~~~~~~~l-~~p~~i~ 246 (249)
T 3ber_A 192 MDEADRILNMDFETEVDKILKVIPR--DRKTFLFSATMTKKVQKLQRAAL-KNPVKCA 246 (249)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHSSCS--SSEEEEEESSCCHHHHHHHHHHC-SSCEEEE
T ss_pred EcChhhhhccChHHHHHHHHHhCCC--CCeEEEEeccCCHHHHHHHHHHC-CCCEEEE
Confidence 9999999999999999999999876 68999999999999999999999 4565554
No 55
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=8e-36 Score=296.29 Aligned_cols=218 Identities=32% Similarity=0.515 Sum_probs=190.5
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
....|++++|++.+++.|.+.||..|+|+|.++|+.++.++|+++++|||||||++|++|+++.+........ ......
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~-~~~~~~ 99 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ-RYSKTA 99 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-------CCB
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccc-cccccC
Confidence 3456999999999999999999999999999999999999999999999999999999999999875432110 001123
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEe
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lV 266 (652)
++++|||+||++|+.|+++.++.++...++.+..++|+.....+...+..+++|+|+||++|.+++....+.+.++++||
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 46899999999999999999999998888999999999999888888888899999999999999998888899999999
Q ss_pred cCcchhhhhcCcHHHHHHHHHhccCCC--CceEEEEcccCChHHHHHHHHhcccCCeEEEEc
Q 006272 267 LDEADEMLRMGFVEDVELILGKVEDAN--KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326 (652)
Q Consensus 267 iDEah~~l~~gf~~~~~~i~~~~~~~~--~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~ 326 (652)
+||||++++++|...+..++..+.... ..|+++||||+++.+..++..++ .++..+.+.
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l-~~~~~i~~~ 240 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFL-YNYIFMTVG 240 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHC-SSCEEEEEC
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHc-CCCEEEEEC
Confidence 999999999999999999999653322 57999999999999999999999 466666654
No 56
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.3e-35 Score=283.51 Aligned_cols=197 Identities=32% Similarity=0.479 Sum_probs=182.0
Q ss_pred CcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCC
Q 006272 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (652)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (652)
..|++++|++.+++.|.++||..|+|+|.++++.++.++|+++++|||||||++|++|+++.+... ...+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~----------~~~~ 72 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK----------KDNI 72 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT----------SCSC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc----------CCCe
Confidence 469999999999999999999999999999999999999999999999999999999999887543 2345
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEec
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lVi 267 (652)
++||++||++|+.|+++.+..+.... ++.+..++|+.....+...+..+++|+|+||++|.+++.++.+.+.++++||+
T Consensus 73 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 79999999999999999999998776 78999999999988888888888999999999999999988888999999999
Q ss_pred CcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcc
Q 006272 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLK 317 (652)
Q Consensus 268 DEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~ 317 (652)
||||++++.+|...+..++..++. ..|+++||||+|..+..++..++.
T Consensus 153 DEah~~~~~~~~~~l~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~l~ 200 (206)
T 1vec_A 153 DEADKLLSQDFVQIMEDIILTLPK--NRQILLYSATFPLSVQKFMNSHLE 200 (206)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHSCT--TCEEEEEESCCCHHHHHHHHHHCS
T ss_pred EChHHhHhhCcHHHHHHHHHhCCc--cceEEEEEeeCCHHHHHHHHHHcC
Confidence 999999999999999999999976 689999999999999999999984
No 57
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.4e-36 Score=296.62 Aligned_cols=205 Identities=31% Similarity=0.462 Sum_probs=181.2
Q ss_pred CcccccC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 109 NAVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 109 ~~~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
..|.+++ +++.+++.|.++||..|+|+|.++|+.++.++|++++||||||||++|++|+++.+....... ..
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~------~~ 125 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMP------RN 125 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCG------GG
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccc------cC
Confidence 4566776 999999999999999999999999999999999999999999999999999999887532111 23
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhC-CcCCCCceEE
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFR 265 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-~~~l~~~~~l 265 (652)
++++||++||++||.|+++.++.++...++.+..++|+.....+...+..+++|+|+||++|.+++... .+.+.++++|
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 457999999999999999999999988899999999999988888888888999999999999998775 4778999999
Q ss_pred ecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCe
Q 006272 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321 (652)
Q Consensus 266 ViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~ 321 (652)
||||||+|++++|...+..|+..++. .+|+++||||+|+.+..+++.+++..+.
T Consensus 206 ViDEah~l~~~~~~~~l~~i~~~~~~--~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 206 VIDEADRILDVGFEEELKQIIKLLPT--RRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHHSCS--SSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred EEcChHHHhhhhHHHHHHHHHHhCCC--CCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 99999999999999999999999976 7899999999999999999999865443
No 58
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=7.7e-36 Score=289.60 Aligned_cols=204 Identities=32% Similarity=0.498 Sum_probs=184.0
Q ss_pred CcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCC
Q 006272 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (652)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (652)
..|+++++++.+++.|.++||..|+|+|.++++.+++++|+++++|||||||++|++|+++.+.... .++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~----------~~~ 73 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER----------AEV 73 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS----------CSC
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc----------CCc
Confidence 4689999999999999999999999999999999999999999999999999999999999876432 245
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCC----CceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceE
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAV----GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~----~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~ 264 (652)
++||++||++|+.|+++.++.++... ++.+..++|+.....+...+..+++|+|+||++|.+++..+.+.+.++++
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 153 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHI 153 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceE
Confidence 79999999999999999999998766 78899999998877666666678999999999999999988888899999
Q ss_pred EecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEE
Q 006272 265 RVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325 (652)
Q Consensus 265 lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~ 325 (652)
||+||||++++++|...+..++..++. .+|+++||||+|..+..++..++ .++..+.+
T Consensus 154 lViDEah~~~~~~~~~~l~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~-~~p~~~~~ 211 (219)
T 1q0u_A 154 LVVDEADLMLDMGFITDVDQIAARMPK--DLQMLVFSATIPEKLKPFLKKYM-ENPTFVHV 211 (219)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHTSCT--TCEEEEEESCCCGGGHHHHHHHC-SSCEEEEC
T ss_pred EEEcCchHHhhhChHHHHHHHHHhCCc--ccEEEEEecCCCHHHHHHHHHHc-CCCeEEEe
Confidence 999999999999999999999999876 78999999999999999999999 56666654
No 59
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.1e-36 Score=335.07 Aligned_cols=282 Identities=15% Similarity=0.127 Sum_probs=201.9
Q ss_pred HHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEE
Q 006272 141 DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220 (652)
Q Consensus 141 ~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~ 220 (652)
...+++++++++||||||||+ ++++.+.... .++|++|||+||.|+++.+..+ ++.+..
T Consensus 150 ar~l~rk~vlv~apTGSGKT~----~al~~l~~~~-------------~gl~l~PtR~LA~Qi~~~l~~~----g~~v~l 208 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTY----HAIQKYFSAK-------------SGVYCGPLKLLAHEIFEKSNAA----GVPCDL 208 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHH----HHHHHHHHSS-------------SEEEEESSHHHHHHHHHHHHHT----TCCEEE
T ss_pred HHhcCCCEEEEEcCCCCCHHH----HHHHHHHhcC-------------CeEEEeCHHHHHHHHHHHHHhc----CCcEEE
Confidence 455789999999999999998 4444444321 2699999999999999999875 577888
Q ss_pred EeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEE
Q 006272 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300 (652)
Q Consensus 221 ~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~ 300 (652)
++|+..... .......+++++|++.+. ....+++|||||||++++.+|...+..++..++. ...+++++
T Consensus 209 ltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~-~~i~il~~ 277 (677)
T 3rc3_A 209 VTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA-EEVHLCGE 277 (677)
T ss_dssp ECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE-EEEEEEEC
T ss_pred EECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCc-cceEEEec
Confidence 888865410 000112566777764331 2467899999999999999999999999988873 26899999
Q ss_pred cccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHH
Q 006272 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA 380 (652)
Q Consensus 301 SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~ 380 (652)
|||.+ .+..+....- ....+.. .. ...... +. ...+. .+... ....||||+|++.++.++
T Consensus 278 SAT~~-~i~~l~~~~~--~~~~v~~--~~---r~~~l~--~~-------~~~l~-~l~~~--~~g~iIf~~s~~~ie~la 337 (677)
T 3rc3_A 278 PAAID-LVMELMYTTG--EEVEVRD--YK---RLTPIS--VL-------DHALE-SLDNL--RPGDCIVCFSKNDIYSVS 337 (677)
T ss_dssp GGGHH-HHHHHHHHHT--CCEEEEE--CC---CSSCEE--EC-------SSCCC-SGGGC--CTTEEEECSSHHHHHHHH
T ss_pred cchHH-HHHHHHHhcC--CceEEEE--ee---ecchHH--HH-------HHHHH-HHHhc--CCCCEEEEcCHHHHHHHH
Confidence 99953 3444443331 1122211 11 000111 00 00010 11111 244589999999999999
Q ss_pred HhcC----CCcccccccchHHHHHHHhhhcC--CCceEEEEccccccCCCCCCccEEEEcCC--------------CCCH
Q 006272 381 DLLP----GARALHGDIQQSQREVTLAGFRS--GKFMTLVATNVAARGLDINDVQLIIQCEP--------------PRDV 440 (652)
Q Consensus 381 ~~l~----~~~~lh~~~~~~~R~~~~~~f~~--g~~~vLvaT~~~~~Gldi~~v~~VI~~~~--------------p~s~ 440 (652)
..|. .+..+||+|++.+|..+++.|++ |.++|||||+++++|||+ +|++||++++ |.|.
T Consensus 338 ~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~ 416 (677)
T 3rc3_A 338 RQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITT 416 (677)
T ss_dssp HHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCH
T ss_pred HHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCH
Confidence 9986 78899999999999999999999 889999999999999999 9999999999 8899
Q ss_pred HHHHHHhhhcccCCCcc-cceeeccCCcchHHHHHH
Q 006272 441 EAYIHRSGRTGRAGVEA-AETITQVSDSVIPAFKSA 475 (652)
Q Consensus 441 ~~y~qr~GR~gR~g~~~-~~~i~~~~~~~~~~~~~~ 475 (652)
.+|+||+|||||.|..+ ...++++.+.....+...
T Consensus 417 ~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~ 452 (677)
T 3rc3_A 417 SQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEI 452 (677)
T ss_dssp HHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHH
Confidence 99999999999999762 233444444444444433
No 60
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.2e-35 Score=291.81 Aligned_cols=205 Identities=32% Similarity=0.472 Sum_probs=175.3
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
....|+++++++.+++.|.++||..|+|+|.++|+.++.++|+++++|||||||++|++|+++.+... ..
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~----------~~ 97 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE----------FK 97 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT----------SC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc----------CC
Confidence 34569999999999999999999999999999999999999999999999999999999999987643 12
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCC-CcEEEeCcHHHHHHHHhCCcCCCCceEE
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKG-IDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~l~~~~~l 265 (652)
.+++||++||++|+.|+++.++.++...++.+..++|+.....+...+..+ ++|+|+||++|.+++.++.+.+.++++|
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF 177 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEE
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEE
Confidence 457999999999999999999999988889999999998887777666655 8999999999999999888889999999
Q ss_pred ecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEE
Q 006272 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324 (652)
Q Consensus 266 ViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~ 324 (652)
||||||++++++|...+..++..++. .+|+++||||+|+.+..++..++ .++..|.
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~l-~~p~~i~ 233 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNT--SIQVVLLSATMPTDVLEVTKKFM-RDPIRIL 233 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCT--TCEEEEECSSCCHHHHHHHHHHC-SSCEEEC
T ss_pred EECCchHhhccCcHHHHHHHHHhCCC--CCeEEEEEEecCHHHHHHHHHHC-CCCEEEE
Confidence 99999999999999999999999876 78999999999999999999999 4555554
No 61
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.3e-36 Score=337.29 Aligned_cols=304 Identities=15% Similarity=0.177 Sum_probs=186.3
Q ss_pred CChHHHHHHHHHHhc----C-CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHH-
Q 006272 131 SLFPIQAMTFDMVLD----G-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH- 204 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~----~-~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~- 204 (652)
.|+|+|.++|+.++. + ++++++++||||||++++..+ ..+....+... ......++|||+||++|+.|++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~-~~l~~~~~~~~---~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQIS-WKLWSARWNRT---GDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHHHHTTCCSS---CSSSCCCEEEEEC----------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHH-HHHHhcccccc---cccCCCeEEEEeCCHHHHHHHHH
Confidence 699999999999875 4 669999999999999965544 44433221000 0123457999999999999999
Q ss_pred HHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHh----CCcCCCCceEEecCcchhhhhcCcHH
Q 006272 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER----GNIDLSSLKFRVLDEADEMLRMGFVE 280 (652)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~----~~~~l~~~~~lViDEah~~l~~gf~~ 280 (652)
+.++.++. .+..+.++ ......+|+|+||++|..++.. ..+....+++|||||||++.... ..
T Consensus 254 ~~~~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~ 320 (590)
T 3h1t_A 254 KTFTPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NS 320 (590)
T ss_dssp -CCTTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred HHHHhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hH
Confidence 77776542 33333322 2345689999999999887652 23456779999999999997543 35
Q ss_pred HHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhccc-----------------CCeEEEEccCcccc-c---------
Q 006272 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKS-----------------DKKTIDLVGNEKMK-A--------- 333 (652)
Q Consensus 281 ~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~~~-~--------- 333 (652)
.+..++..++ ..++++||||+..........++.. ++..+.+....... .
T Consensus 321 ~~~~il~~~~---~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (590)
T 3h1t_A 321 NWREILEYFE---PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDR 397 (590)
T ss_dssp -CHHHHHHST---TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------
T ss_pred HHHHHHHhCC---cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccc
Confidence 5677777775 3689999999764332222233311 11111111000000 0
Q ss_pred -CCCceEEEccCCc-------hhhhhh----HHHHHHhhCCCCeEEEEecchhHHHHHHHhcCC------------Cccc
Q 006272 334 -STNVRHIVLPCSS-------SARSQV----IPDIIRCYSSGGRTIIFTETKESASQLADLLPG------------ARAL 389 (652)
Q Consensus 334 -~~~~~~~~~~~~~-------~~~~~~----l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~~------------~~~l 389 (652)
...+....+.... ..+... +..++......+++||||+++..|+.++..|.. +..+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i 477 (590)
T 3h1t_A 398 FGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARV 477 (590)
T ss_dssp -----------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEEC
T ss_pred cccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEE
Confidence 0000000000000 011111 222333434568999999999999999998851 5578
Q ss_pred ccccchHHHHHHHhhhcCCCce---EEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCC
Q 006272 390 HGDIQQSQREVTLAGFRSGKFM---TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455 (652)
Q Consensus 390 h~~~~~~~R~~~~~~f~~g~~~---vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~ 455 (652)
||.+++ +|..+++.|++++.. |||||+++++|||+|+|++||+|++|.|+..|+||+||+||.+.
T Consensus 478 ~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 478 TSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp SSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred eCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 998864 799999999998766 88999999999999999999999999999999999999999874
No 62
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=3.3e-35 Score=287.31 Aligned_cols=204 Identities=32% Similarity=0.525 Sum_probs=181.2
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCC
Q 006272 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (652)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 186 (652)
....|+++++++.+.+.|.+.||..|+|+|.++|+.++.++|+++++|||||||++|++|+++.+.... .
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~----------~ 91 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN----------L 91 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS----------C
T ss_pred CCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC----------C
Confidence 345699999999999999999999999999999999999999999999999999999999999886432 2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCC-CceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEE
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~l 265 (652)
++++||++||++|+.|+++.++.++... ++++..++|+.....+...+. +++|+|+||++|.+++..+.+.+.++++|
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~l 170 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLF 170 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSCGGGCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcccccCCEE
Confidence 4579999999999999999999998765 789999999988877666554 69999999999999998888888999999
Q ss_pred ecCcchhhhhcC-cHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEE
Q 006272 266 VLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324 (652)
Q Consensus 266 ViDEah~~l~~g-f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~ 324 (652)
|+||||++++++ |...+..++..++. ..|+++||||+|..+..++..++ .++..|.
T Consensus 171 ViDEah~~~~~~~~~~~~~~i~~~~~~--~~~~l~lSAT~~~~~~~~~~~~~-~~p~~i~ 227 (230)
T 2oxc_A 171 ILDEADKLLEEGSFQEQINWIYSSLPA--SKQMLAVSATYPEFLANALTKYM-RDPTFVR 227 (230)
T ss_dssp EESSHHHHHSTTSSHHHHHHHHHHSCS--SCEEEEEESCCCHHHHHHHTTTC-SSCEEEC
T ss_pred EeCCchHhhcCcchHHHHHHHHHhCCC--CCeEEEEEeccCHHHHHHHHHHc-CCCeEEE
Confidence 999999999998 99999999999976 68999999999999999888888 4555543
No 63
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.7e-35 Score=286.50 Aligned_cols=208 Identities=32% Similarity=0.485 Sum_probs=182.7
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
...|+++++++.+.+.|.+.||..|+|+|.++++.++.++|+++++|||||||++|++|+++.+...... ...+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~------~~~~ 97 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT------STDG 97 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC------GGGC
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc------ccCC
Confidence 3569999999999999999999999999999999999999999999999999999999999988653221 1234
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhC-CcCCCCceEEe
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFRV 266 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-~~~l~~~~~lV 266 (652)
+++||++||++|+.|+++.++.++...++.+..++|+.....+...+ .+++|+|+||++|.+++... .+.+.++++||
T Consensus 98 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 98 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEE
Confidence 57999999999999999999999988889999999998887766655 46999999999999998775 56788999999
Q ss_pred cCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEE
Q 006272 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325 (652)
Q Consensus 267 iDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~ 325 (652)
+||||++++++|...+..++..++. .+|+++||||+++.+..++..++ .++..+.+
T Consensus 177 iDEah~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~-~~p~~i~~ 232 (236)
T 2pl3_A 177 LDEADRILDMGFADTMNAVIENLPK--KRQTLLFSATQTKSVKDLARLSL-KNPEYVWV 232 (236)
T ss_dssp ETTHHHHHHTTTHHHHHHHHHTSCT--TSEEEEEESSCCHHHHHHHHHSC-SSCEEEEC
T ss_pred EeChHHHhcCCcHHHHHHHHHhCCC--CCeEEEEEeeCCHHHHHHHHHhC-CCCEEEEe
Confidence 9999999999999999999999976 78999999999999999999988 56666654
No 64
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=8.7e-35 Score=283.36 Aligned_cols=204 Identities=30% Similarity=0.465 Sum_probs=176.6
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCC
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 187 (652)
...|+++++++.+++.|.++||..|+|+|.++++.++.++|+++++|||||||++|++|+++.+.... .+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~----------~~ 82 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV----------KA 82 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC----------CS
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC----------CC
Confidence 35699999999999999999999999999999999999999999999999999999999999886432 34
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEec
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lVi 267 (652)
+++||++||++|+.|+++.+..++...++.+..++|+.....+...+.. ++|+|+||++|.+++.+..+.+.++++||+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 5799999999999999999999998889999999999887766665554 999999999999999988888999999999
Q ss_pred CcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEE
Q 006272 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325 (652)
Q Consensus 268 DEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~ 325 (652)
||||++++++|...+..++..++. ..|+++||||+++.+..++..++ .++..+.+
T Consensus 162 DEah~~~~~~~~~~l~~i~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~-~~p~~i~~ 216 (224)
T 1qde_A 162 DEADEMLSSGFKEQIYQIFTLLPP--TTQVVLLSATMPNDVLEVTTKFM-RNPVRILV 216 (224)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCT--TCEEEEEESSCCHHHHHHHHHHC-SSCEEEC-
T ss_pred cChhHHhhhhhHHHHHHHHHhCCc--cCeEEEEEeecCHHHHHHHHHHC-CCCEEEEe
Confidence 999999999999999999999876 78999999999999999999998 45665544
No 65
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.5e-34 Score=278.15 Aligned_cols=203 Identities=45% Similarity=0.727 Sum_probs=183.0
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCe
Q 006272 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (652)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (652)
.|+++++++.+.+.|.+.||..|+|+|.++++.+++++|+++++|||||||++|++|+++.+..... ...+++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-------~~~~~~ 74 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE-------RGRKPR 74 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-------TTCCCS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-------cCCCCc
Confidence 5889999999999999999999999999999999999999999999999999999999998865321 124567
Q ss_pred EEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCc
Q 006272 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (652)
Q Consensus 190 ~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDE 269 (652)
+||++||++|+.|+++.+..++.. +.+..++|+.....+...+..+++|+|+||++|.+++..+.+.+.++++||+||
T Consensus 75 ~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 75 ALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred EEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 999999999999999999998754 778889999988888777777899999999999999998888899999999999
Q ss_pred chhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEE
Q 006272 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324 (652)
Q Consensus 270 ah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~ 324 (652)
||++++++|...+..++..++. ..|+++||||+++.+..++..++ .++..+.
T Consensus 153 ah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~p~~i~ 204 (207)
T 2gxq_A 153 ADEMLSMGFEEEVEALLSATPP--SRQTLLFSATLPSWAKRLAERYM-KNPVLIN 204 (207)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCT--TSEEEEECSSCCHHHHHHHHHHC-SSCEEEE
T ss_pred hhHhhccchHHHHHHHHHhCCc--cCeEEEEEEecCHHHHHHHHHHc-CCCeEEE
Confidence 9999999999999999998876 78999999999999999999998 4565554
No 66
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.9e-34 Score=278.81 Aligned_cols=206 Identities=31% Similarity=0.464 Sum_probs=180.5
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCC
Q 006272 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (652)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 184 (652)
+.....|++++|++.+.+.|.+.||..|+|+|.++++.+++++|+++++|||||||++|++|+++.+....
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~--------- 80 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT--------- 80 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT---------
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC---------
Confidence 34456799999999999999999999999999999999999999999999999999999999998875421
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHHhcCC-CceEEEEeCCcchHHHHHHhcC-CCcEEEeCcHHHHHHHHhCCcCCCCc
Q 006272 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKK-GIDVVIGTPGRIKDHIERGNIDLSSL 262 (652)
Q Consensus 185 ~~~~~~lil~PtreLa~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~l~~~ 262 (652)
..+++||++||++|+.|+++.++.+.... ++++..++|+.....+...+.. .++|+|+||++|.+++....+.+.++
T Consensus 81 -~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 81 -GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp -TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred -CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 23579999999999999999999998765 7899999999988777766653 57999999999999999888889999
Q ss_pred eEEecCcchhhhh-cCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEE
Q 006272 263 KFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323 (652)
Q Consensus 263 ~~lViDEah~~l~-~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i 323 (652)
++||+||||++++ .+|...+..++..++. ..|+++||||++..+..++..++ .++..|
T Consensus 160 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~p~~i 218 (220)
T 1t6n_A 160 KHFILDECDKMLEQLDMRRDVQEIFRMTPH--EKQVMMFSATLSKEIRPVCRKFM-QDPMEI 218 (220)
T ss_dssp CEEEEESHHHHHSSHHHHHHHHHHHHTSCS--SSEEEEEESCCCTTTHHHHHTTC-SSCEEE
T ss_pred CEEEEcCHHHHhcccCcHHHHHHHHHhCCC--cCeEEEEEeecCHHHHHHHHHHc-CCCeEE
Confidence 9999999999997 5888999999988876 78999999999999999999998 455544
No 67
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.4e-34 Score=280.71 Aligned_cols=207 Identities=28% Similarity=0.433 Sum_probs=176.0
Q ss_pred Cccccc----CCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCC
Q 006272 109 NAVSRF----RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (652)
Q Consensus 109 ~~~~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 184 (652)
..|.++ ++++.+++.|.+.||..|+|+|.++|+.++.++|+++++|||||||++|++|+++.+....
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--------- 95 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA--------- 95 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC---------
T ss_pred cCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc---------
Confidence 456655 8999999999999999999999999999999999999999999999999999999886432
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHH-HHhcCCCcEEEeCcHHHHHHHHhC--CcCCCC
Q 006272 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE-FKLKKGIDVVIGTPGRIKDHIERG--NIDLSS 261 (652)
Q Consensus 185 ~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~-~~~~~~~~Ilv~Tp~rl~~~l~~~--~~~l~~ 261 (652)
..++++||++||++|+.|+++.+..++...++.+..++|+....... .....+++|+|+||++|.+++... .+.+.+
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 96 NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 23457999999999999999999999988888888877765433221 222456899999999999999876 577899
Q ss_pred ceEEecCcchhhhh---cCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhcccCCeEEEEc
Q 006272 262 LKFRVLDEADEMLR---MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326 (652)
Q Consensus 262 ~~~lViDEah~~l~---~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~ 326 (652)
+++|||||||++++ .+|...+..++..+... +.|+++||||+|..+..++..++ .++..+.+.
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~SAT~~~~v~~~~~~~l-~~p~~i~~~ 241 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFLACTSH-KVRRAMFSATFAYDVEQWCKLNL-DNVISVSIG 241 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCT-TCEEEEEESSCCHHHHHHHHHHS-SSCEEEEEC
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHHhcCCC-CcEEEEEeccCCHHHHHHHHHhC-CCCEEEEeC
Confidence 99999999999998 47889999998777542 68999999999999999999999 567766654
No 68
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=2.3e-33 Score=281.85 Aligned_cols=244 Identities=31% Similarity=0.413 Sum_probs=189.5
Q ss_pred CceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCce
Q 006272 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411 (652)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~ 411 (652)
.+.|+++.+....|...|..++.... .+++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|.++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 46788999999999999999998874 7899999999999999999985 678999999999999999999999999
Q ss_pred EEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcc-----------------------
Q 006272 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSV----------------------- 468 (652)
Q Consensus 412 vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~----------------------- 468 (652)
|||||+++++|||+|+|++|||||+|.+..+|+||+|||||.|..+.+++++...+.
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 999999999999999999999999999999999999999999988766555433320
Q ss_pred ---------------------hHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEecCCCc
Q 006272 469 ---------------------IPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPI 527 (652)
Q Consensus 469 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (652)
...|...+.+++++ ...+.+++||+.+.+.+. ..++++...+++++++++.|++.
T Consensus 161 ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~---~~~e~laaal~~l~~~~~-~~~~l~~~~~~~~~~~~~~g~~~ 236 (300)
T 3i32_A 161 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAE---GRVEVVAALLALLLGGAP-AERSLLTGEEGWRTYKATGPRLS 236 (300)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHH---TCHHHHHHHHHHHHTCCC-CCBCTTTCCBSCBCEEEECTTCC
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhc---CcHHHHHHHHHHHhcCCc-CccccccCCCCcEEEEEecCCCC
Confidence 11122223333333 345778899999888877 77788888899999999999985
Q ss_pred cCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecChhhHHHHHhhccCCCceeeeeccCCCcchhhccc
Q 006272 528 YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQS 600 (652)
Q Consensus 528 ~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~~~a~~~~~~~~~~~~i~l~~~~~lp~~~~~~~~ 600 (652)
. +.+++ .|.+. +. .|++|++.+ .++|||+|.+.++ +..++.+++++.+|++++++.+
T Consensus 237 ~-~~~~~-~i~~~-~~----~ig~i~~~~--~~~~~dvp~~~~~-------~~~~~~~~~~~~~p~~~~~~~~ 293 (300)
T 3i32_A 237 L-PRLVA-LLKGQ-GL----EVGKVAEAE--GGFYVDLRPEARP-------EVAGLRLEPARRVEGLLEIPSR 293 (300)
T ss_dssp H-HHHHH-HHHHT-TC----CCCCEEEET--TEEEECBCSSCCC-------CCTTCEEEEC------------
T ss_pred C-cHHHH-HHHhc-CC----eECcEEEeC--CEEEEEeCHHHcC-------cCCCcEEEecccCCCCccCCCc
Confidence 5 88997 55443 33 899999977 8999999998877 4567999999999999887643
No 69
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=3.1e-32 Score=292.35 Aligned_cols=315 Identities=21% Similarity=0.199 Sum_probs=225.6
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
+|+ .|+++|....-.+..|+ |+...||+|||+++.+|++-..+.+. .+.||+||+.||.|-+++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~-------------~vhVvT~ndyLA~rdae~ 135 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGK-------------GVHLVTVNDYLARRDALW 135 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSS-------------CEEEEESSHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCC-------------ceEEEeccHHHHHhHHHH
Confidence 466 69999999988888888 99999999999999999985544432 389999999999999999
Q ss_pred HHHHhcCCCceEEEEeCC--------------------------------------------------cchHHHHHHhcC
Q 006272 207 FDVYGGAVGLTSCCLYGG--------------------------------------------------APYHAQEFKLKK 236 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg--------------------------------------------------~~~~~~~~~~~~ 236 (652)
+..+...+++++.+++.. .+........
T Consensus 136 m~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY-- 213 (822)
T 3jux_A 136 MGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY-- 213 (822)
T ss_dssp HHHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--
T ss_pred HHHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--
Confidence 999999999999999872 1111111112
Q ss_pred CCcEEEeCcHHH-HHHHHhC------CcCCCCceEEecCcchhhhhc---------C-------cHHHHHHHHHhcc---
Q 006272 237 GIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLRM---------G-------FVEDVELILGKVE--- 290 (652)
Q Consensus 237 ~~~Ilv~Tp~rl-~~~l~~~------~~~l~~~~~lViDEah~~l~~---------g-------f~~~~~~i~~~~~--- 290 (652)
.+||+++|..-| .++|..+ ......+.+.||||+|.+|=. | ++..+..+...+.
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~ 293 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDK 293 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTT
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCC
Confidence 379999999887 4455432 223466899999999987610 0 1111111111110
Q ss_pred -----------------------------------------------------CC-------------------------
Q 006272 291 -----------------------------------------------------DA------------------------- 292 (652)
Q Consensus 291 -----------------------------------------------------~~------------------------- 292 (652)
..
T Consensus 294 dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr 373 (822)
T 3jux_A 294 DFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRR 373 (822)
T ss_dssp TEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCC
T ss_pred cEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCc
Confidence 00
Q ss_pred ----------------------------------CCceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCce
Q 006272 293 ----------------------------------NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338 (652)
Q Consensus 293 ----------------------------------~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 338 (652)
.-.++..||+|+......+...|- ...+. ++...+. ..+.
T Consensus 374 ~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~---l~vv~-IPtnkp~--~R~d 447 (822)
T 3jux_A 374 YSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG---MEVVV-IPTHKPM--IRKD 447 (822)
T ss_dssp CGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC---CCEEE-CCCSSCC--CCEE
T ss_pred CchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC---CeEEE-ECCCCCc--ceee
Confidence 013688899999887766655553 22332 2222221 1222
Q ss_pred E-EEccCCchhhhhhHHHHHHh-hCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceE
Q 006272 339 H-IVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412 (652)
Q Consensus 339 ~-~~~~~~~~~~~~~l~~ll~~-~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~v 412 (652)
+ ..+......|...+...+.. ...+.++||||+|++.++.|+..|. .+.++||++.+.++..+...|+.| .|
T Consensus 448 ~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~V 525 (822)
T 3jux_A 448 HDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MV 525 (822)
T ss_dssp CCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CE
T ss_pred cCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eE
Confidence 2 12334566777777776654 3456899999999999999999997 577899997766666666667666 69
Q ss_pred EEEccccccCCCCC--------CccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCc
Q 006272 413 LVATNVAARGLDIN--------DVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDS 467 (652)
Q Consensus 413 LvaT~~~~~Gldi~--------~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~ 467 (652)
+||||+|+||+||+ ++.+||||++|.|.+.|+||+|||||+|.+|.+..++..++
T Consensus 526 tVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 526 TIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp EEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred EEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 99999999999998 66799999999999999999999999999987765554444
No 70
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=4.4e-33 Score=324.04 Aligned_cols=315 Identities=16% Similarity=0.144 Sum_probs=214.9
Q ss_pred CCChHHHHHHHHHHhc--CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~--~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 207 (652)
..|+|+|.+++..++. +..+|++++||+|||++++..+...+..+.. .++|||||+ .|+.||..++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~-----------~rvLIVvP~-sLl~Qw~~E~ 219 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA-----------ERVLIIVPE-TLQHQWLVEM 219 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSC-----------CCEEEECCT-TTHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCC-----------CeEEEEeCH-HHHHHHHHHH
Confidence 4689999999998886 4589999999999999998887776654321 259999999 9999999999
Q ss_pred HHHhcCCCceEEEEeCCcchHHHHH---HhcCCCcEEEeCcHHHHHHHHh-CCcCCCCceEEecCcchhhhhcCcH-HHH
Q 006272 208 DVYGGAVGLTSCCLYGGAPYHAQEF---KLKKGIDVVIGTPGRIKDHIER-GNIDLSSLKFRVLDEADEMLRMGFV-EDV 282 (652)
Q Consensus 208 ~~~~~~~~~~~~~~~gg~~~~~~~~---~~~~~~~Ilv~Tp~rl~~~l~~-~~~~l~~~~~lViDEah~~l~~gf~-~~~ 282 (652)
.... ++.+..+.++.... ... ......+|+|+|++.|...... ..+...++++|||||||++...... ...
T Consensus 220 ~~~f---~l~v~v~~~~~~~~-~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 220 LRRF---NLRFALFDDERYAE-AQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HHHS---CCCCEECCHHHHHH-HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred HHHh---CCCEEEEccchhhh-hhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 7654 45555544432221 111 1123579999999988643211 1233557899999999999754421 111
Q ss_pred HHHHHhccCCCCceEEEEcccCCh----HHHHHHH----------------------------HhcccC-----------
Q 006272 283 ELILGKVEDANKVQTLLFSATLPS----WVKHIST----------------------------KFLKSD----------- 319 (652)
Q Consensus 283 ~~i~~~~~~~~~~q~l~~SAT~~~----~~~~~~~----------------------------~~~~~~----------- 319 (652)
..++..+.. ...++++||||+.. ++..+.. .++...
T Consensus 296 ~~~l~~L~~-~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~ 374 (968)
T 3dmq_A 296 YQAIEQLAE-HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLG 374 (968)
T ss_dssp HHHHHHHHT-TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSST
T ss_pred HHHHHHHhh-cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 222222221 14579999999632 0111100 000000
Q ss_pred ----------------------------------------CeEEEEccCcc-cccCCCceEEE-----------------
Q 006272 320 ----------------------------------------KKTIDLVGNEK-MKASTNVRHIV----------------- 341 (652)
Q Consensus 320 ----------------------------------------~~~i~~~~~~~-~~~~~~~~~~~----------------- 341 (652)
...+....... ...........
T Consensus 375 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~ 454 (968)
T 3dmq_A 375 EMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIM 454 (968)
T ss_dssp TTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHT
T ss_pred HHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhh
Confidence 00000000000 00000000000
Q ss_pred ----------------------------ccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC-----CCcc
Q 006272 342 ----------------------------LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----GARA 388 (652)
Q Consensus 342 ----------------------------~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~-----~~~~ 388 (652)
..+....|...+..++... .+.++||||+++..++.++..|. .+..
T Consensus 455 ~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~-~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~ 533 (968)
T 3dmq_A 455 GARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSH-RSQKVLVICAKAATALQLEQVLREREGIRAAV 533 (968)
T ss_dssp TCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHT-SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEE
T ss_pred hhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhC-CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEE
Confidence 1123345667777777764 67899999999999999999886 4678
Q ss_pred cccccchHHHHHHHhhhcCCC--ceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceee
Q 006272 389 LHGDIQQSQREVTLAGFRSGK--FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETIT 462 (652)
Q Consensus 389 lh~~~~~~~R~~~~~~f~~g~--~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~ 462 (652)
+||+|++.+|..+++.|++|+ ++|||||+++++|||+|++++||+||+|+++..|+||+||+||.|..+.+.++
T Consensus 534 lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~ 609 (968)
T 3dmq_A 534 FHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIH 609 (968)
T ss_dssp ECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEE
T ss_pred EeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEE
Confidence 999999999999999999998 99999999999999999999999999999999999999999999988754443
No 71
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.98 E-value=1.2e-31 Score=293.46 Aligned_cols=303 Identities=14% Similarity=0.184 Sum_probs=205.7
Q ss_pred CCChHHHHHHHHHHh----cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l----~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~ 205 (652)
..|+|+|.++++.+. .++++|++++||+|||++++..+........ ..++|||||+ .|+.||.+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~-----------~~~~LIv~P~-~l~~qw~~ 103 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE-----------LTPSLVICPL-SVLKNWEE 103 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-----------CSSEEEEECS-TTHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC-----------CCCEEEEccH-HHHHHHHH
Confidence 369999999998774 5789999999999999997655444333221 2259999995 69999999
Q ss_pred HHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHH
Q 006272 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285 (652)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i 285 (652)
++++++. .+.+..+.|+... .....++|+|+||+.+..... +....+++||+||||++.+... .....
T Consensus 104 e~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~ 171 (500)
T 1z63_A 104 ELSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKA 171 (500)
T ss_dssp HHHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHH
T ss_pred HHHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHH
Confidence 9999874 4566666665421 122358999999999976543 3345689999999999976542 23344
Q ss_pred HHhccCCCCceEEEEcccCChH-HHHH---H---------------------------------HHhcccCCeEEEEccC
Q 006272 286 LGKVEDANKVQTLLFSATLPSW-VKHI---S---------------------------------TKFLKSDKKTIDLVGN 328 (652)
Q Consensus 286 ~~~~~~~~~~q~l~~SAT~~~~-~~~~---~---------------------------------~~~~~~~~~~i~~~~~ 328 (652)
+..++ ..+.++||||+... ...+ . ..++ .+..+.....
T Consensus 172 l~~l~---~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l--~~~~lrr~k~ 246 (500)
T 1z63_A 172 VKELK---SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII--SPFILRRTKY 246 (500)
T ss_dssp HHTSC---EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH--TTTEECCCTT
T ss_pred HHhhc---cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH--hhHeeeeccc
Confidence 44443 35789999997321 1111 0 1111 0111111000
Q ss_pred c--c-cccCCCceE-EEccC-------------------------------------------------------Cchhh
Q 006272 329 E--K-MKASTNVRH-IVLPC-------------------------------------------------------SSSAR 349 (652)
Q Consensus 329 ~--~-~~~~~~~~~-~~~~~-------------------------------------------------------~~~~~ 349 (652)
+ . ...+..... .++.. ....|
T Consensus 247 ~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K 326 (500)
T 1z63_A 247 DKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGK 326 (500)
T ss_dssp CHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHH
T ss_pred ccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchh
Confidence 0 0 000001111 11111 11233
Q ss_pred hhhHHHHHHhh-CCCCeEEEEecchhHHHHHHHhcC-----CCcccccccchHHHHHHHhhhcCC-Cce-EEEEcccccc
Q 006272 350 SQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSG-KFM-TLVATNVAAR 421 (652)
Q Consensus 350 ~~~l~~ll~~~-~~~~~~iVF~~s~~~~~~l~~~l~-----~~~~lh~~~~~~~R~~~~~~f~~g-~~~-vLvaT~~~~~ 421 (652)
...+..++... ..+.++||||++...++.++..|. .+..+||++++.+|..+++.|+++ ... +|+||+++++
T Consensus 327 ~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~ 406 (500)
T 1z63_A 327 MIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGF 406 (500)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-C
T ss_pred HHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccC
Confidence 34444455443 467899999999999999998875 578899999999999999999988 555 7999999999
Q ss_pred CCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCccccee
Q 006272 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETI 461 (652)
Q Consensus 422 Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i 461 (652)
|||++++++||+||+|+++..|+||+||++|.|....+.|
T Consensus 407 Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v 446 (500)
T 1z63_A 407 GINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 446 (500)
T ss_dssp CCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEE
T ss_pred CCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEE
Confidence 9999999999999999999999999999999997765444
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=6.2e-31 Score=303.18 Aligned_cols=301 Identities=12% Similarity=0.083 Sum_probs=205.2
Q ss_pred CCChHHHHHHHHHHhc--------------CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEec
Q 006272 130 ESLFPIQAMTFDMVLD--------------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~--------------~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 195 (652)
..|+|+|.+|++.++. +++.+++++||||||+++ ++++..+... ....++|||+|
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~----------~~~~rvLvlvp 338 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL----------DFIDKVFFVVD 338 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC----------TTCCEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc----------CCCceEEEEeC
Confidence 3599999999999875 378999999999999997 6676555421 12347999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhc-CCCcEEEeCcHHHHHHHHhCC--cCCCCceEEecCcchh
Q 006272 196 TRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLDEADE 272 (652)
Q Consensus 196 treLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~--~~l~~~~~lViDEah~ 272 (652)
+++|+.|+.+.|..++.. .+.++.+.......+. ..++|+|+||++|..++.... ..+....+||+||||+
T Consensus 339 r~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHr 412 (1038)
T 2w00_A 339 RKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHR 412 (1038)
T ss_dssp GGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCT
T ss_pred cHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccch
Confidence 999999999999887643 2345555555555563 568999999999999887542 2356789999999999
Q ss_pred hhhcCcHHHHHHHHHhccCCCCceEEEEcccCChHHH----HHHHHhccc----------------CCeEEEEccCcccc
Q 006272 273 MLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVK----HISTKFLKS----------------DKKTIDLVGNEKMK 332 (652)
Q Consensus 273 ~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~----~~~~~~~~~----------------~~~~i~~~~~~~~~ 332 (652)
+.. ...+..|+..++ +.++++||||+..... .....++.. .+..+.........
T Consensus 413 s~~---~~~~~~I~~~~p---~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~ 486 (1038)
T 2w00_A 413 SQF---GEAQKNLKKKFK---RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQF 486 (1038)
T ss_dssp THH---HHHHHHHHHHCS---SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGG
T ss_pred hcc---hHHHHHHHHhCC---cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchh
Confidence 863 234566777775 4699999999864221 011111110 01111111000000
Q ss_pred ----------cCCCceEEEccCCchhhhh-hHHHHHHhhC----------CCCeEEEEecchhHHHHHHHhcCC------
Q 006272 333 ----------ASTNVRHIVLPCSSSARSQ-VIPDIIRCYS----------SGGRTIIFTETKESASQLADLLPG------ 385 (652)
Q Consensus 333 ----------~~~~~~~~~~~~~~~~~~~-~l~~ll~~~~----------~~~~~iVF~~s~~~~~~l~~~l~~------ 385 (652)
....+.+..... ...+.. ++..++..+. .+.++||||+|+..|..++..|..
T Consensus 487 ~~~~~e~d~~~~~~i~~~~~l~-~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~ 565 (1038)
T 2w00_A 487 KSLETETDEKKLSAAENQQAFL-HPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAA 565 (1038)
T ss_dssp HHHHTCCCHHHHHHTCSTTTTT-CHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred hhccccccHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhc
Confidence 000000000001 122222 2333444321 346899999999999999887741
Q ss_pred ----------C-cccccc----------c----------ch-----------------------------HHHHHHHhhh
Q 006272 386 ----------A-RALHGD----------I----------QQ-----------------------------SQREVTLAGF 405 (652)
Q Consensus 386 ----------~-~~lh~~----------~----------~~-----------------------------~~R~~~~~~f 405 (652)
+ .++|+. + ++ ..|..++++|
T Consensus 566 ~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~F 645 (1038)
T 2w00_A 566 NKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRV 645 (1038)
T ss_dssp TTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHH
T ss_pred ccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 2 345542 2 22 2488899999
Q ss_pred cCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCC
Q 006272 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGV 455 (652)
Q Consensus 406 ~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~ 455 (652)
++|.++|||+|+++.+|+|+|.+ +|+++|.|.+...|+||+||++|.+.
T Consensus 646 k~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~ 694 (1038)
T 2w00_A 646 KNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYD 694 (1038)
T ss_dssp HTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCC
T ss_pred HcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCC
Confidence 99999999999999999999999 78899999999999999999999985
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=3e-28 Score=272.58 Aligned_cols=316 Identities=15% Similarity=0.182 Sum_probs=211.8
Q ss_pred CChHHHHHHHHHHh---------cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHH
Q 006272 131 SLFPIQAMTFDMVL---------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l---------~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~ 201 (652)
.|+|+|.+++..+. .+...|+..+||+|||++++..+...+....... ....++|||||+ +|+.
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~------p~~~~~LiV~P~-sll~ 127 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCK------PEIDKVIVVSPS-SLVR 127 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSS------CSCSCEEEEECH-HHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcccc------CCCCcEEEEecH-HHHH
Confidence 69999999998874 3467999999999999998777766655432211 112358999997 8999
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCcchHHH--HHHh-c-----CCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhh
Q 006272 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQ--EFKL-K-----KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (652)
Q Consensus 202 q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--~~~~-~-----~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~ 273 (652)
||.+++.++... .+.+..++++...... .... . ...+|+|+|++.+.... ..+....+++||+||||++
T Consensus 128 qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 128 NWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceec
Confidence 999999998754 4667777776543221 1111 1 14789999999987654 2344456889999999998
Q ss_pred hhcCcHHHHHHHHHhccCCCCceEEEEcccCChH----HH----------------------------------------
Q 006272 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSW----VK---------------------------------------- 309 (652)
Q Consensus 274 l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~----~~---------------------------------------- 309 (652)
-+.. ......+..+. ....+++|||+-.. +.
T Consensus 205 kn~~--~~~~~al~~l~---~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~ 279 (644)
T 1z3i_X 205 KNSD--NQTYLALNSMN---AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAA 279 (644)
T ss_dssp CTTC--HHHHHHHHHHC---CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHH
T ss_pred CChh--hHHHHHHHhcc---cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHH
Confidence 6543 12223333343 35789999995211 00
Q ss_pred ---------HHHHHhcc----------cCCeEEEEcc--Ccc--------------cc---cCCCc-----------eE-
Q 006272 310 ---------HISTKFLK----------SDKKTIDLVG--NEK--------------MK---ASTNV-----------RH- 339 (652)
Q Consensus 310 ---------~~~~~~~~----------~~~~~i~~~~--~~~--------------~~---~~~~~-----------~~- 339 (652)
.+...++- .++....++. ... .. ..... ++
T Consensus 280 ~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~ 359 (644)
T 1z3i_X 280 GEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKL 359 (644)
T ss_dssp HHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH
Confidence 00111110 0000000000 000 00 00000 00
Q ss_pred -------------------------------EEccCCchhhhhhHHHHHHhh--CCCCeEEEEecchhHHHHHHHhcC--
Q 006272 340 -------------------------------IVLPCSSSARSQVIPDIIRCY--SSGGRTIIFTETKESASQLADLLP-- 384 (652)
Q Consensus 340 -------------------------------~~~~~~~~~~~~~l~~ll~~~--~~~~~~iVF~~s~~~~~~l~~~l~-- 384 (652)
..+......|...+..++... ..+.++||||++...++.|...|.
T Consensus 360 c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~ 439 (644)
T 1z3i_X 360 CNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR 439 (644)
T ss_dssp HHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC
Confidence 000001123444455555443 246899999999999999999886
Q ss_pred --CCcccccccchHHHHHHHhhhcCCCc---eEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccc
Q 006272 385 --GARALHGDIQQSQREVTLAGFRSGKF---MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAE 459 (652)
Q Consensus 385 --~~~~lh~~~~~~~R~~~~~~f~~g~~---~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~ 459 (652)
.+..+||++++.+|..+++.|+++.. .+||+|+++++|||++++++||+||+|+++..|.|++||++|.|....+
T Consensus 440 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v 519 (644)
T 1z3i_X 440 RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTC 519 (644)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCce
Confidence 57789999999999999999999865 4899999999999999999999999999999999999999999977544
Q ss_pred ee
Q 006272 460 TI 461 (652)
Q Consensus 460 ~i 461 (652)
.|
T Consensus 520 ~v 521 (644)
T 1z3i_X 520 YI 521 (644)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 74
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-28 Score=280.82 Aligned_cols=311 Identities=15% Similarity=0.209 Sum_probs=214.9
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l----~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.|+|+|.+++..++ .+++.|++.+||+|||++++..+...+..... ...+||||| ..|+.||.++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~----------~~~~LIV~P-~sll~qW~~E 304 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ----------NGPHIIVVP-LSTMPAWLDT 304 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSC----------CSCEEEECC-TTTHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCC----------CCCEEEEEC-chHHHHHHHH
Confidence 68999999998776 78999999999999999876666544322111 124899999 6899999999
Q ss_pred HHHHhcCCCceEEEEeCCcchHHHHHHh------------cCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhh
Q 006272 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKL------------KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~------------~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l 274 (652)
|.+++ .++.+.+.+|........... ...++|+|+|++.+...... +....+++|||||||++-
T Consensus 305 ~~~~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lk 380 (800)
T 3mwy_W 305 FEKWA--PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLK 380 (800)
T ss_dssp HHHHS--TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGC
T ss_pred HHHHC--CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhc
Confidence 99987 457777777776655443321 23578999999999765432 223357899999999986
Q ss_pred hcCcHHHHHHHHHhccCCCCceEEEEcccCC----hHHHHHHHHhcc----------------------------cCCeE
Q 006272 275 RMGFVEDVELILGKVEDANKVQTLLFSATLP----SWVKHISTKFLK----------------------------SDKKT 322 (652)
Q Consensus 275 ~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~----~~~~~~~~~~~~----------------------------~~~~~ 322 (652)
+.. ..+...+..+. ....+++|||+- .++..+...... ..+..
T Consensus 381 n~~--s~~~~~l~~l~---~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~ 455 (800)
T 3mwy_W 381 NAE--SSLYESLNSFK---VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFI 455 (800)
T ss_dssp CSS--SHHHHHHTTSE---EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGE
T ss_pred Cch--hHHHHHHHHhh---hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHH
Confidence 543 23344444443 356799999962 122222111100 00011
Q ss_pred EEEccCcccccCCCceEE--EccC--------------------------------------------------------
Q 006272 323 IDLVGNEKMKASTNVRHI--VLPC-------------------------------------------------------- 344 (652)
Q Consensus 323 i~~~~~~~~~~~~~~~~~--~~~~-------------------------------------------------------- 344 (652)
+...........+..... .+..
T Consensus 456 lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~ 535 (800)
T 3mwy_W 456 LRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQ 535 (800)
T ss_dssp EECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCC
T ss_pred hhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHH
Confidence 110000000000000000 0000
Q ss_pred -----------------CchhhhhhHHHHHHhh-CCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHH
Q 006272 345 -----------------SSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402 (652)
Q Consensus 345 -----------------~~~~~~~~l~~ll~~~-~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~ 402 (652)
....|...+..++..+ ..+.++||||+....++.|...|. .+..+||.+++.+|..++
T Consensus 536 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i 615 (800)
T 3mwy_W 536 KFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISI 615 (800)
T ss_dssp CC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHH
T ss_pred hcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHH
Confidence 0123455566666554 356799999999999999999987 678899999999999999
Q ss_pred hhhcCCCc---eEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCccccee
Q 006272 403 AGFRSGKF---MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETI 461 (652)
Q Consensus 403 ~~f~~g~~---~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i 461 (652)
+.|+++.. .+|++|.+++.|||++.+++||+||+|+|+..++||+||+.|.|....+.|
T Consensus 616 ~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 677 (800)
T 3mwy_W 616 DHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMV 677 (800)
T ss_dssp HTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEE
T ss_pred HHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEE
Confidence 99998654 489999999999999999999999999999999999999999997654444
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=1.7e-27 Score=260.24 Aligned_cols=131 Identities=22% Similarity=0.275 Sum_probs=114.2
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHH
Q 006272 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (652)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~ 205 (652)
-+|+ .||++|..++|.+++|+ |+.++||||||++|.+|++.....+ .+++||+||++||.|+++
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G-------------~qv~VvTPTreLA~Qdae 138 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTG-------------KGVHVVTVNDYLARRDAE 138 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTC-------------SCCEEEESSHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhC-------------CCEEEEeCCHHHHHHHHH
Confidence 3699 99999999999999998 9999999999999999996544432 148999999999999999
Q ss_pred HHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHH-HHHHHhCC------cCCC---CceEEecCcchhhh
Q 006272 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERGN------IDLS---SLKFRVLDEADEML 274 (652)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~------~~l~---~~~~lViDEah~~l 274 (652)
++..+...+++++.+++|+.+... +.....++|+|+||++| .++|..+. +.++ ++.++||||||.||
T Consensus 139 ~m~~l~~~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 139 WMGPVYRGLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHHHHTTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHHHHhcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 999999999999999999988543 33444699999999999 89887753 5677 89999999999997
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=5.3e-27 Score=262.03 Aligned_cols=190 Identities=22% Similarity=0.255 Sum_probs=129.2
Q ss_pred CceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecch
Q 006272 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373 (652)
Q Consensus 294 ~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~ 373 (652)
..|+++||||++...... . ...+...........+ ...+.........++..+......+.++||||+|+
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~---~~~~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----S---GRVVEQIIRPTGLLDP---LVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----C---SEEEEECSCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred cCCEEEEecCCCHHHHHh----h---hCeeeeeeccCCCCCC---eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 468999999998754221 0 1122221111000011 11122222233334444444444678999999999
Q ss_pred hHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCC-----CCCHHHHH
Q 006272 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP-----PRDVEAYI 444 (652)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~-----p~s~~~y~ 444 (652)
..++.|+..|. .+..+||+|++.+|..+++.|+.|.++|||||+++++|+|+|+|++||+||. |.|..+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 99999999997 5778999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCc
Q 006272 445 HRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYT 502 (652)
Q Consensus 445 qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (652)
||+|||||.+ .|. ++++++... ..+...+.+.... ..+...+....+..
T Consensus 530 Qr~GRagR~~-~G~-~i~~~~~~~-~~~~~~i~~~~~~------r~~~~~~~~~~~~~ 578 (664)
T 1c4o_A 530 QTIGRAARNA-RGE-VWLYADRVS-EAMQRAIEETNRR------RALQEAYNLEHGIT 578 (664)
T ss_dssp HHHGGGTTST-TCE-EEEECSSCC-HHHHHHHHHHHHH------HHHHHHHHHHHTCC
T ss_pred HHHCccCcCC-CCE-EEEEEcCCC-HHHHHHHHHHHHH------HHHHHHHHHhcCCC
Confidence 9999999995 444 444554443 3344444433322 22344555555543
No 77
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=1.6e-25 Score=250.05 Aligned_cols=190 Identities=21% Similarity=0.247 Sum_probs=129.5
Q ss_pred CceEEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecch
Q 006272 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373 (652)
Q Consensus 294 ~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~ 373 (652)
..|+++||||++....... . ..+...........+ .+.+.........++..+......+.++||||+|+
T Consensus 386 ~~q~i~~SAT~~~~~~~~~-----~--~~~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEHT-----D--EMVEQIIRPTGLLDP---LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp CSEEEEECSSCCHHHHHHC-----S--SCEEECCCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCCEEEEecCCChhHHHhh-----h--CeeeeeecccCCCCC---eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 5789999999986542220 1 111111110000011 11122222333344455555555678999999999
Q ss_pred hHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCC-----CCCHHHHH
Q 006272 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP-----PRDVEAYI 444 (652)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~-----p~s~~~y~ 444 (652)
..++.|+..|. .+..+||++++.+|..+++.|++|.++|||||+++++|+|+|+|++||++|. |.|..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 99999999997 5778999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCc
Q 006272 445 HRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYT 502 (652)
Q Consensus 445 qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (652)
||+|||||. ..|. +++++++... .+...+.+.... ..+...+....+..
T Consensus 536 Qr~GRagR~-~~G~-~i~~~~~~~~-~~~~~i~~~~~~------r~i~~~~~~~~~~~ 584 (661)
T 2d7d_A 536 QTIGRAARN-AEGR-VIMYADKITK-SMEIAINETKRR------REQQERFNEEHGIT 584 (661)
T ss_dssp HHHHTTTTS-TTCE-EEEECSSCCH-HHHHHHHHHHHH------HHHHHHHHHHHTCC
T ss_pred HHhCcccCC-CCCE-EEEEEeCCCH-HHHHHHHHHHHH------HHHHHHhhhhcCCC
Confidence 999999998 4544 4445554433 333344433222 23444555555543
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=3.6e-25 Score=205.08 Aligned_cols=145 Identities=23% Similarity=0.369 Sum_probs=124.3
Q ss_pred CCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCC
Q 006272 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409 (652)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~ 409 (652)
..++.|+++.+....|...|..++... ...++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|.
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 357889999999999999999999876 56799999999999999999986 6789999999999999999999999
Q ss_pred ceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHH
Q 006272 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELL 480 (652)
Q Consensus 410 ~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~ 480 (652)
.+|||||+++++|||+|++++||+||+|+++..|+||+||+||.|..+.++++. .+.....+...+.+.+
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~-~~~~~~~~~~~l~~~~ 151 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV-SDENDAKILNDVQDRF 151 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEE-CSHHHHHHHHHHHHHH
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEE-cChhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877655544 4333333333444433
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=1.2e-24 Score=199.93 Aligned_cols=140 Identities=33% Similarity=0.539 Sum_probs=124.3
Q ss_pred ccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcC
Q 006272 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407 (652)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~ 407 (652)
....++.|.++.+....|...|..++... ..+++||||+++..++.++..|. .+..+||+|++.+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34567899999999999999999999876 56799999999999999999986 68899999999999999999999
Q ss_pred CCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHH
Q 006272 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFK 473 (652)
Q Consensus 408 g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~ 473 (652)
|..+|||||+++++|||+|++++||+||+|.++.+|+||+||+||.|..+.++ .++.+.+...+.
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~-~~~~~~~~~~~~ 148 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAI-SFVTAFEKRFLA 148 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEE-EEECGGGHHHHH
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEE-EEecHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999886654 445555554444
No 80
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.92 E-value=1e-24 Score=205.25 Aligned_cols=164 Identities=27% Similarity=0.356 Sum_probs=122.7
Q ss_pred HHhcccCCeEEEEccCcccccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcc
Q 006272 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARA 388 (652)
Q Consensus 313 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~ 388 (652)
..|+ .++..|.+... .....++.|.++.+....|...|..++... ++++||||+++..++.++..|. .+..
T Consensus 9 ~~~~-~~p~~i~v~~~--~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 9 SGVD-LGTENLYFQSM--GAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp ----------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred cccc-CCCEEEEECCC--CCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 3455 35555555332 345678999999999999999988888764 4689999999999999999996 6789
Q ss_pred cccccchHHHHHHHhhhcCCCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcc
Q 006272 389 LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSV 468 (652)
Q Consensus 389 lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~ 468 (652)
+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+||+|.++.+|+||+|||||.|..+.+++++ .+..
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~-~~~~ 162 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFI-NKAC 162 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEE-CTTS
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEE-cCch
Confidence 999999999999999999999999999999999999999999999999999999999999999999887665544 4433
Q ss_pred hHHHHHHHHHHHhc
Q 006272 469 IPAFKSAAEELLNN 482 (652)
Q Consensus 469 ~~~~~~~~~~~~~~ 482 (652)
...+...+.+++..
T Consensus 163 ~~~~~~~l~~~l~~ 176 (191)
T 2p6n_A 163 DESVLMDLKALLLE 176 (191)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 33444455555544
No 81
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=2.2e-24 Score=200.71 Aligned_cols=138 Identities=30% Similarity=0.540 Sum_probs=117.9
Q ss_pred cCCCceEEEccCCchh-hhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcC
Q 006272 333 ASTNVRHIVLPCSSSA-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407 (652)
Q Consensus 333 ~~~~~~~~~~~~~~~~-~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~ 407 (652)
+..++.|+++.+.... |...|..++... ..+++||||+++..++.++..|. .+..+||+|++.+|..+++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4568899999888766 899999988876 56899999999999999999997 57899999999999999999999
Q ss_pred CCceEEEEccccccCCCCCCccEEEEcCCC------CCHHHHHHHhhhcccCCCcccceeeccCCcchHHH
Q 006272 408 GKFMTLVATNVAARGLDINDVQLIIQCEPP------RDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAF 472 (652)
Q Consensus 408 g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p------~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~ 472 (652)
|.++|||||+++++|||+|++++||+||+| .++.+|+||+|||||.|..+.+ +.++.+.+...+
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~-~~~~~~~~~~~~ 152 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLA-FNMIEVDELPSL 152 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEE-EEEECGGGHHHH
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceE-EEEEccchHHHH
Confidence 999999999999999999999999999999 9999999999999999977655 444555554443
No 82
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=9.9e-25 Score=210.77 Aligned_cols=169 Identities=19% Similarity=0.198 Sum_probs=122.9
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHH-HHH
Q 006272 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ-VHE 205 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q-~~~ 205 (652)
.....|+|+|.++++.++.++++++.+|||+|||++|++++++.+..... .....++||++|+++|+.| +.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-------~~~~~~~lil~p~~~L~~q~~~~ 101 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK-------ASEPGKVIVLVNKVLLVEQLFRK 101 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH-------TTCCCCEEEEESSHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc-------ccCCCcEEEEECHHHHHHHHHHH
Confidence 34558999999999999999999999999999999999999887654210 0123469999999999999 778
Q ss_pred HHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCC------cCCCCceEEecCcchhhhhcCcH
Q 006272 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN------IDLSSLKFRVLDEADEMLRMGFV 279 (652)
Q Consensus 206 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~------~~l~~~~~lViDEah~~l~~gf~ 279 (652)
.+..+... ++.+..++|+.........+...++|+|+||++|..++.... +.+.++++|||||||++++.++.
T Consensus 102 ~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 180 (216)
T 3b6e_A 102 EFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVY 180 (216)
T ss_dssp THHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CH
T ss_pred HHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcH
Confidence 88888754 678888888877665554555569999999999999887643 56788999999999999877666
Q ss_pred HHHH-HHHHhc-c----------CCCCceEEEEccc
Q 006272 280 EDVE-LILGKV-E----------DANKVQTLLFSAT 303 (652)
Q Consensus 280 ~~~~-~i~~~~-~----------~~~~~q~l~~SAT 303 (652)
..+. .++... . ..+.+++|+||||
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 181 NNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 6553 222221 1 1136899999998
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.91 E-value=3.1e-24 Score=201.03 Aligned_cols=148 Identities=38% Similarity=0.554 Sum_probs=114.3
Q ss_pred ccCCCceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcC
Q 006272 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407 (652)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~ 407 (652)
....++.|.++.+....|...|..++.......++||||+++..++.++..|. .+..+||+|++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 45678999999999999999999999887667899999999999999999986 67899999999999999999999
Q ss_pred CCceEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHHHHHHHHHh
Q 006272 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFKSAAEELLN 481 (652)
Q Consensus 408 g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~~~~~~~~~ 481 (652)
|.++|||||+++++|||+|++++||+||+|+++.+|+||+||+||.|..+.+ ++++.+.+...+..+. +.+.
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~-~~~~~~~~~~~~~~l~-~~l~ 166 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA-TSFFNERNINITKDLL-DLLV 166 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEE-EEEECGGGGGGHHHHH-HHHH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEE-EEEEchhhHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999999999999999999987655 4455555555554433 3443
No 84
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=7.1e-24 Score=203.35 Aligned_cols=135 Identities=39% Similarity=0.574 Sum_probs=117.8
Q ss_pred CceEEEccCCchhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCce
Q 006272 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411 (652)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~ 411 (652)
.+.+.++.++...|...+..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|..+
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 3556677788889999999999876 57899999999999999999986 688999999999999999999999999
Q ss_pred EEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHH
Q 006272 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAF 472 (652)
Q Consensus 412 vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~ 472 (652)
|||||+++++|||+|++++|||||+|.++.+|+||+|||||.|..+.++ .++.+.+...+
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~-~l~~~~~~~~~ 143 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVV-LLYGPRERRDV 143 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEE-EEECGGGHHHH
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEE-EEEchhHHHHH
Confidence 9999999999999999999999999999999999999999999876554 44454444433
No 85
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.90 E-value=2.7e-23 Score=203.20 Aligned_cols=178 Identities=17% Similarity=0.226 Sum_probs=133.3
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEecc
Q 006272 117 SVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196 (652)
Q Consensus 117 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt 196 (652)
++.+.+.+.......++++|.++++.+..|++++++||||||||++|.+++++.+..... ...+++++++|+
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--------~~~~~~l~~~p~ 118 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--------AAECNIVVTQPR 118 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--------GGGCEEEEEESS
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--------CCceEEEEeccc
Confidence 444445555555567899999999999999999999999999999999999887664321 224579999999
Q ss_pred HHHHHHHHHHHHHHhc-CCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhh-h
Q 006272 197 RELAKQVHEDFDVYGG-AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM-L 274 (652)
Q Consensus 197 reLa~q~~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~-l 274 (652)
++|+.|+++.+..... ..+..+..-..... ......++|+|+|||+|++++.. .++++++|||||||++ +
T Consensus 119 ~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~ 190 (235)
T 3llm_A 119 RISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDI 190 (235)
T ss_dssp HHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCH
T ss_pred hHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCc
Confidence 9999999988875433 23333332221110 11124588999999999999976 4899999999999996 7
Q ss_pred hcCcH-HHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhc
Q 006272 275 RMGFV-EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (652)
Q Consensus 275 ~~gf~-~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (652)
+.+|. ..+..++...+ +.|+++||||++... ...|+
T Consensus 191 ~~~~~~~~l~~i~~~~~---~~~~il~SAT~~~~~---~~~~~ 227 (235)
T 3llm_A 191 NTDFLLVVLRDVVQAYP---EVRIVLMSATIDTSM---FCEYF 227 (235)
T ss_dssp HHHHHHHHHHHHHHHCT---TSEEEEEECSSCCHH---HHHHT
T ss_pred chHHHHHHHHHHHhhCC---CCeEEEEecCCCHHH---HHHHc
Confidence 78877 46667776654 589999999999875 44455
No 86
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.90 E-value=5.9e-24 Score=195.76 Aligned_cols=136 Identities=27% Similarity=0.501 Sum_probs=115.1
Q ss_pred CceEEEccCCchh-hhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCc
Q 006272 336 NVRHIVLPCSSSA-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410 (652)
Q Consensus 336 ~~~~~~~~~~~~~-~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~ 410 (652)
++.|+++.+.... |...|..++... ..+++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|..
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 5778888887777 999999999876 56899999999999999999986 57899999999999999999999999
Q ss_pred eEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeeccCCcchHHHH
Q 006272 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQVSDSVIPAFK 473 (652)
Q Consensus 411 ~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~~~~~~~~~~~ 473 (652)
+|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|..+.+++ ++.+.+...+.
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~-~~~~~~~~~~~ 143 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAIN-FVTNEDVGAMR 143 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEE-EEETTTHHHHH
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEE-EEcchHHHHHH
Confidence 999999999999999999999999999999999999999999997776554 44455444433
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=1.9e-22 Score=220.92 Aligned_cols=302 Identities=17% Similarity=0.201 Sum_probs=167.6
Q ss_pred CCCCCChHHHHHHHH----HHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHH
Q 006272 127 KGIESLFPIQAMTFD----MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (652)
Q Consensus 127 ~g~~~~~~~Q~~~i~----~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q 202 (652)
.|| .|+|+|.+++. ++..++++++.||||+|||++|++|++.. ..+++|++||++|+.|
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~----------------~~~~~~~~~t~~l~~q 66 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL----------------KKKVLIFTRTHSQLDS 66 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----------------TCEEEEEESCHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC----------------CCcEEEEcCCHHHHHH
Confidence 367 79999999865 45688999999999999999999998753 1259999999999999
Q ss_pred HHHHHHHHhcCCCceEEEEeCCcch--------HH---------------------------------------HHHHhc
Q 006272 203 VHEDFDVYGGAVGLTSCCLYGGAPY--------HA---------------------------------------QEFKLK 235 (652)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~gg~~~--------~~---------------------------------------~~~~~~ 235 (652)
+.+++..+ ++++..+.|.... .. ..+...
T Consensus 67 ~~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~ 142 (540)
T 2vl7_A 67 IYKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANL 142 (540)
T ss_dssp HHHHHGGG----TCCEEEC---------------------------------------------------------CTTG
T ss_pred HHHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHh
Confidence 99988774 3444443332110 00 001112
Q ss_pred CCCcEEEeCcHHHHHHHHhCCc-------CCCCceEEecCcchhhhhcC-----------cHH-----------------
Q 006272 236 KGIDVVIGTPGRIKDHIERGNI-------DLSSLKFRVLDEADEMLRMG-----------FVE----------------- 280 (652)
Q Consensus 236 ~~~~Ilv~Tp~rl~~~l~~~~~-------~l~~~~~lViDEah~~l~~g-----------f~~----------------- 280 (652)
..++|||+|+..|++...++.+ .+....+|||||||.|.+.. +..
T Consensus 143 ~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~ 222 (540)
T 2vl7_A 143 KDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAK 222 (540)
T ss_dssp GGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred hcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHH
Confidence 3579999999999886654322 24567899999999984310 000
Q ss_pred -------------------------------------HHHHHHHhc----------------------------------
Q 006272 281 -------------------------------------DVELILGKV---------------------------------- 289 (652)
Q Consensus 281 -------------------------------------~~~~i~~~~---------------------------------- 289 (652)
.+..++..+
T Consensus 223 ~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 302 (540)
T 2vl7_A 223 KVKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLV 302 (540)
T ss_dssp HHHHHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEE
Confidence 000000000
Q ss_pred cCCCC--------ce----EEEEcccCChHHHHHHHHhcccCCeEEEEccCcccccCCCceEEE----ccCCchhhh---
Q 006272 290 EDANK--------VQ----TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV----LPCSSSARS--- 350 (652)
Q Consensus 290 ~~~~~--------~q----~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~--- 350 (652)
-.+.. .. +|++||||++... +...|. ..+.. .....+.+ +..+...+.
T Consensus 303 ~~P~~~~~~l~~~~~~~~~~IltSATL~p~~~-~~~~f~------~~~~~------~~g~~~~~~~~~l~s~f~~r~~~~ 369 (540)
T 2vl7_A 303 KVPSDVNQLIEDALNVKTFKVLMSGTLPESLT-LTNSYK------IVVNE------SYGRGEYYYCPNVTSELRKRNSNI 369 (540)
T ss_dssp EECSCHHHHHHHHTCCSSCEEEEESSCCTTCC-CTTEEE------EECCC------C-CCCEEEECTTCCCCGGGHHHHH
T ss_pred EehHHHHHHHHHhcCccCCeEEEcccCCCCcc-cchhcC------Cchhh------eecCCcceeccccCCCcccccCHH
Confidence 00000 11 3778888766200 000010 11100 00111111 111111110
Q ss_pred hhHHHHHH-hh-CCCCeEEEEecchhHHHHHHHhcCCCc-ccccccchHHHHHHHhhhcCCCceEEE--EccccccCCCC
Q 006272 351 QVIPDIIR-CY-SSGGRTIIFTETKESASQLADLLPGAR-ALHGDIQQSQREVTLAGFRSGKFMTLV--ATNVAARGLDI 425 (652)
Q Consensus 351 ~~l~~ll~-~~-~~~~~~iVF~~s~~~~~~l~~~l~~~~-~lh~~~~~~~R~~~~~~f~~g~~~vLv--aT~~~~~Gldi 425 (652)
..+...+. .. ...+.+|||++|...++.++..|.... ..++.. ..|..+++.|+.+. .||+ ||+.+++|||+
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~~~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~ 446 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSGIPVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEF 446 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTTSCEEESTTT--CCHHHHHHHHHTSC-CEEEEEC----------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhccCceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceec
Confidence 12222222 11 246799999999999999999997533 233333 57889999998864 6777 89999999999
Q ss_pred CC----ccEEEEcCCCCC----H--------------------------HHHHHHhhhcccCCCcccceeeccCC
Q 006272 426 ND----VQLIIQCEPPRD----V--------------------------EAYIHRSGRTGRAGVEAAETITQVSD 466 (652)
Q Consensus 426 ~~----v~~VI~~~~p~s----~--------------------------~~y~qr~GR~gR~g~~~~~~i~~~~~ 466 (652)
|+ +++||++++|.. + ....|.+||+-|.-.+-+. |++.++
T Consensus 447 ~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~-v~llD~ 520 (540)
T 2vl7_A 447 REKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK-IYLCDS 520 (540)
T ss_dssp -----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE-EEEESG
T ss_pred CCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE-EEEEcc
Confidence 97 899999999841 1 2345889999998655443 334443
No 88
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.79 E-value=5.7e-24 Score=196.86 Aligned_cols=127 Identities=28% Similarity=0.506 Sum_probs=114.8
Q ss_pred CceEEEccCCc-hhhhhhHHHHHHhhCCCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCc
Q 006272 336 NVRHIVLPCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410 (652)
Q Consensus 336 ~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~ 410 (652)
++.|.++.+.. ..|...|..++... ..+++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|..
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 56777777777 78888888888765 56799999999999999999997 67899999999999999999999999
Q ss_pred eEEEEccccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCcccceeec
Q 006272 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETITQ 463 (652)
Q Consensus 411 ~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i~~ 463 (652)
+|||||+++++|||+|++++||+||+|+++.+|+||+||+||.|..+.++++.
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 134 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 134 (170)
Confidence 99999999999999999999999999999999999999999999877665444
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=3.6e-22 Score=201.02 Aligned_cols=155 Identities=20% Similarity=0.129 Sum_probs=126.2
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
..|+|+|.++++.++.+++.++++|||+|||+++++++...+.... .++|||+||++|+.|+++++..
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------------~~~lil~Pt~~L~~q~~~~l~~ 179 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE------------GKILIIVPTTALTTQMADDFVD 179 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS------------SEEEEECSSHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC------------CeEEEEECCHHHHHHHHHHHHH
Confidence 3799999999999998889999999999999999988887665321 2599999999999999999999
Q ss_pred HhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhc
Q 006272 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (652)
Q Consensus 210 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~ 289 (652)
++......+..++++..... ......+|+|+||+++.... ...+.++++|||||||++.. ..+..++..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~---~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~ 249 (282)
T 1rif_A 180 YRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLATG----KSISSIISGL 249 (282)
T ss_dssp HTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC---GGGGGGEEEEEEETGGGCCH----HHHHHHTTTC
T ss_pred hcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH---HHHHhhCCEEEEECCccCCc----ccHHHHHHHh
Confidence 98766778888888865432 22356899999999875542 23467889999999999973 4677777777
Q ss_pred cCCCCceEEEEcccCChHH
Q 006272 290 EDANKVQTLLFSATLPSWV 308 (652)
Q Consensus 290 ~~~~~~q~l~~SAT~~~~~ 308 (652)
.. ..++++||||++...
T Consensus 250 ~~--~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 250 NN--CMFKFGLSGSLRDGK 266 (282)
T ss_dssp TT--CCEEEEECSSCCTTS
T ss_pred hc--CCeEEEEeCCCCCcc
Confidence 55 689999999998654
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.86 E-value=5.2e-20 Score=202.37 Aligned_cols=129 Identities=24% Similarity=0.138 Sum_probs=102.9
Q ss_pred CChHHHHHHHHH----HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDM----VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 131 ~~~~~Q~~~i~~----~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.|+|.|.+++.. +..++++++.||||+|||++|++|++.. .+++||++||++|+.|+.++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----------------~~~v~i~~pt~~l~~q~~~~ 66 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----------------KPKVLFVVRTHNEFYPIYRD 66 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----------------CSEEEEEESSGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----------------CCeEEEEcCCHHHHHHHHHH
Confidence 689999987764 4588999999999999999999999971 23699999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCcch---------------------------------HHHH------------------HHhc
Q 006272 207 FDVYGGAVGLTSCCLYGGAPY---------------------------------HAQE------------------FKLK 235 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~~~---------------------------------~~~~------------------~~~~ 235 (652)
+..+....++++..+.|...+ .... +...
T Consensus 67 ~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 67 LTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp HTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 999887778888888774322 1111 2233
Q ss_pred CCCcEEEeCcHHHHHHHHhCCcCC-CCceEEecCcchhhhh
Q 006272 236 KGIDVVIGTPGRIKDHIERGNIDL-SSLKFRVLDEADEMLR 275 (652)
Q Consensus 236 ~~~~Ilv~Tp~rl~~~l~~~~~~l-~~~~~lViDEah~~l~ 275 (652)
..++|||+|+..|++...+..+.+ ....+|||||||.|.+
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 468999999999999876654433 4678999999999865
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.79 E-value=6.8e-19 Score=171.61 Aligned_cols=139 Identities=21% Similarity=0.142 Sum_probs=110.6
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
..|+++|.+++..++.++++++++|||+|||++++.++... . .++||++|+++|+.|+++.+..
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--~--------------~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--S--------------TPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--C--------------SCEEEEESSHHHHHHHHHHHGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--C--------------CCEEEEeCCHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999998887653 1 1489999999999999999887
Q ss_pred HhcCCCce-EEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHh
Q 006272 210 YGGAVGLT-SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (652)
Q Consensus 210 ~~~~~~~~-~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~ 288 (652)
+ ++. +..+.|+... ..+|+|+||+.+...+.. ...++++|||||||++.+..|. .++..
T Consensus 156 ~----~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~ 215 (237)
T 2fz4_A 156 F----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQM 215 (237)
T ss_dssp G----CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHT
T ss_pred C----CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHh
Confidence 3 566 7777776542 479999999999876652 1345899999999999876543 45555
Q ss_pred ccCCCCceEEEEcccCChH
Q 006272 289 VEDANKVQTLLFSATLPSW 307 (652)
Q Consensus 289 ~~~~~~~q~l~~SAT~~~~ 307 (652)
++ ..++++||||++..
T Consensus 216 ~~---~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 216 SI---APFRLGLTATFERE 231 (237)
T ss_dssp CC---CSEEEEEEESCC--
T ss_pred cc---CCEEEEEecCCCCC
Confidence 54 46899999998753
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.73 E-value=2e-16 Score=175.07 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=68.0
Q ss_pred CChHHHHHHHH----HHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHH
Q 006272 131 SLFPIQAMTFD----MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (652)
Q Consensus 131 ~~~~~Q~~~i~----~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~ 206 (652)
.|+|.|.+.+. ++..++++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~------------~~kvli~t~T~~l~~Qi~~e 70 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER------------KLKVLYLVRTNSQEEQVIKE 70 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH------------TCEEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc------------CCeEEEECCCHHHHHHHHHH
Confidence 68999988875 456899999999999999999999999887532 23699999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCc
Q 006272 207 FDVYGGAVGLTSCCLYGGA 225 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~gg~ 225 (652)
+..+....++++..+.|+.
T Consensus 71 l~~l~~~~~~~~~~l~gr~ 89 (620)
T 4a15_A 71 LRSLSSTMKIRAIPMQGRV 89 (620)
T ss_dssp HHHHHHHSCCCEEECCCHH
T ss_pred HHHHhhccCeEEEEEECCC
Confidence 9988766677777666543
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.68 E-value=4.8e-17 Score=161.23 Aligned_cols=117 Identities=14% Similarity=0.246 Sum_probs=90.0
Q ss_pred CchhhhhhHHHHHHhh-CCCCeEEEEecchhHHHHHHHhcC-----CCcccccccchHHHHHHHhhhcCC-Cce-EEEEc
Q 006272 345 SSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSG-KFM-TLVAT 416 (652)
Q Consensus 345 ~~~~~~~~l~~ll~~~-~~~~~~iVF~~s~~~~~~l~~~l~-----~~~~lh~~~~~~~R~~~~~~f~~g-~~~-vLvaT 416 (652)
....|...+..++... ..+.++||||++...++.|...|. .+..+||++++.+|..+++.|+++ .+. +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4456788888877664 356899999999999999998874 577899999999999999999998 677 78999
Q ss_pred cccccCCCCCCccEEEEcCCCCCHHHHHHHhhhcccCCCccccee
Q 006272 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGVEAAETI 461 (652)
Q Consensus 417 ~~~~~Gldi~~v~~VI~~~~p~s~~~y~qr~GR~gR~g~~~~~~i 461 (652)
+++++|||++.+++||+||+|+++..|+||+||++|.|....+.|
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v 217 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 217 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEE
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEE
Confidence 999999999999999999999999999999999999998765443
No 94
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=99.24 E-value=2e-11 Score=96.77 Aligned_cols=90 Identities=28% Similarity=0.357 Sum_probs=84.2
Q ss_pred HhCCcccccccccccCCCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecChhhHHHHHhhc
Q 006272 498 AVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGA 577 (652)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~~~a~~~~~~~ 577 (652)
++|+++++.||++++.++++|+.+..++.+..++++|++|++++++...+.|++|.++.|.++++||+|.+.++.+...+
T Consensus 2 ~SG~te~~~RSLLt~~eG~~Tl~l~~~~~i~~~~y~w~~L~~~l~e~~~~~v~~m~l~~d~~GavFDvP~e~~~~~~~~~ 81 (92)
T 2e29_A 2 SSGSSGFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEW 81 (92)
T ss_dssp CCSCSCCCCCCCCCCCCCEEEEEEECSSCCSSTHHHHHHHHHHSCHHHHTTCEEEEECTTSSEEEEEEEHHHHHHHHHHC
T ss_pred CCCcCCCCCcccccCCCCCEEEEEecCCcccchHHHHHHHHHhcCHHHHhhhCeEEEecCCCEEEEECcHHHHHHHHhhC
Confidence 46888899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCceeeeec
Q 006272 578 DNAANVSLEVL 588 (652)
Q Consensus 578 ~~~~~i~l~~~ 588 (652)
.+.+ +.++++
T Consensus 82 ~~~~-~~l~v~ 91 (92)
T 2e29_A 82 HDSD-WILSVP 91 (92)
T ss_dssp CSSS-CEEECC
T ss_pred CCCc-eEEEec
Confidence 8777 888775
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.95 E-value=8.3e-10 Score=122.04 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHhcCCcEEEEccCCCCch--hhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 133 FPIQAMTFDMVLDGSDLVGRARTGQGKT--LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 133 ~~~Q~~~i~~~l~~~dvl~~a~TGsGKT--l~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
+++|.++++.++.++++++.|++||||| ++++++++..+... .+.++++++||..+|.++.+.+...
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-----------~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-----------ERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-----------CCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-----------CCCeEEEEeCChhHHHHHHHHHHHH
Confidence 7899999999999999999999999999 66788887765321 2346999999999999999888765
Q ss_pred hcCCCceEEEEeCCcchHHHHHHhcCCC-cEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhc
Q 006272 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGI-DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (652)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~-~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~ 289 (652)
+...++..... ...+. + .... .++-.+|+.. . +.........+++||||||+ |++ ...+..|+..+
T Consensus 220 ~~~l~l~~~~~-~~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l 286 (608)
T 1w36_D 220 LRQLPLTDEQK-KRIPE--D----ASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDAL 286 (608)
T ss_dssp HHHSSCCSCCC-CSCSC--C----CBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTC
T ss_pred HhcCCCCHHHH-hccch--h----hhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhC
Confidence 54333221100 00000 0 0001 1222233321 1 11111222368999999999 555 56778888888
Q ss_pred cCCCCceEEEEcc
Q 006272 290 EDANKVQTLLFSA 302 (652)
Q Consensus 290 ~~~~~~q~l~~SA 302 (652)
+. ..|++++--
T Consensus 287 ~~--~~~liLvGD 297 (608)
T 1w36_D 287 PD--HARVIFLGD 297 (608)
T ss_dssp CT--TCEEEEEEC
T ss_pred CC--CCEEEEEcc
Confidence 75 678888743
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.25 E-value=3.2e-05 Score=82.57 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=50.5
Q ss_pred HHHHCCCCCChHHHHHHHHHHhcC-----CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccH
Q 006272 123 KLKSKGIESLFPIQAMTFDMVLDG-----SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (652)
Q Consensus 123 ~l~~~g~~~~~~~Q~~~i~~~l~~-----~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 197 (652)
....+.|..|++-|.+++..++.. ..+++.|+.|||||.+. ..++..+..... ..+++++||.
T Consensus 17 ~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~-----------~~il~~a~T~ 84 (459)
T 3upu_A 17 RGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGE-----------TGIILAAPTH 84 (459)
T ss_dssp ----CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTC-----------CCEEEEESSH
T ss_pred ccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCC-----------ceEEEecCcH
Confidence 344567889999999999877532 38999999999999754 334444443211 1489999998
Q ss_pred HHHHHHHHHH
Q 006272 198 ELAKQVHEDF 207 (652)
Q Consensus 198 eLa~q~~~~~ 207 (652)
..|..+.+.+
T Consensus 85 ~Aa~~l~~~~ 94 (459)
T 3upu_A 85 AAKKILSKLS 94 (459)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 8887666544
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.10 E-value=5.5e-06 Score=92.51 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHhcCCc-EEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~d-vl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
.+.+-|.+|+..++..++ .||+||+|||||.+..-.+.+.+..+ .++|+++||..-+.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~-------------~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQG-------------LKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTT-------------CCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCC-------------CeEEEEcCchHHHHHHHHHHHh
Confidence 478999999999987765 68999999999987665555555432 2599999999999998888765
Q ss_pred H
Q 006272 210 Y 210 (652)
Q Consensus 210 ~ 210 (652)
.
T Consensus 256 ~ 256 (646)
T 4b3f_X 256 C 256 (646)
T ss_dssp T
T ss_pred c
Confidence 4
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.10 E-value=1.5e-05 Score=87.05 Aligned_cols=124 Identities=19% Similarity=0.149 Sum_probs=77.7
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.+++.|.+++..++.++.+++.|+.|||||.+.. .++..+... +.++++++||...+..+.+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~~------------g~~Vl~~ApT~~Aa~~L~e~~~-- 253 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAESL------------GLEVGLCAPTGKAARRLGEVTG-- 253 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHHT------------TCCEEEEESSHHHHHHHHHHHT--
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHhc------------CCeEEEecCcHHHHHHhHhhhc--
Confidence 5889999999999999999999999999997533 333333321 2258999999998887765431
Q ss_pred hcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhcc
Q 006272 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (652)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~ 290 (652)
.....+. ..+. . .|. .+..........++||||||+.+. ...+..++..++
T Consensus 254 -----~~a~Tih---------~ll~----~---~~~----~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 254 -----RTASTVH---------RLLG----Y---GPQ----GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVP 304 (574)
T ss_dssp -----SCEEEHH---------HHTT----E---ETT----EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSC
T ss_pred -----ccHHHHH---------HHHc----C---Ccc----hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCc
Confidence 1111110 0000 0 000 011112233467899999999663 456677777776
Q ss_pred CCCCceEEEE
Q 006272 291 DANKVQTLLF 300 (652)
Q Consensus 291 ~~~~~q~l~~ 300 (652)
. ..+++++
T Consensus 305 ~--~~~lilv 312 (574)
T 3e1s_A 305 P--GARVLLV 312 (574)
T ss_dssp T--TCEEEEE
T ss_pred C--CCEEEEE
Confidence 4 4566654
No 99
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.00 E-value=3.2e-05 Score=85.82 Aligned_cols=70 Identities=23% Similarity=0.219 Sum_probs=54.2
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH
Q 006272 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (652)
Q Consensus 129 ~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 208 (652)
+..+++.|.+|+..++.+.-++++||+|||||.+..- ++..+.... +.++|+++||...+.++.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~~-----------~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQG-----------NGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTSS-----------SCCEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHcC-----------CCeEEEEeCcHHHHHHHHHHHH
Confidence 3467899999999999888899999999999987543 334443311 2259999999999999988876
Q ss_pred HH
Q 006272 209 VY 210 (652)
Q Consensus 209 ~~ 210 (652)
..
T Consensus 246 ~~ 247 (624)
T 2gk6_A 246 QT 247 (624)
T ss_dssp TT
T ss_pred hc
Confidence 54
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=6.6e-05 Score=85.19 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=53.2
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
..+++.|.+|+..++.+.-+++.||+|||||.+..-.+. .+.... +.++|+++||...+.++.+.+..
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~-~l~~~~-----------~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVY-HLSKIH-----------KDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHH-HHHHHH-----------CCCEEEEESSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHH-HHHhCC-----------CCeEEEEcCcHHHHHHHHHHHHh
Confidence 356899999999999877799999999999986543333 332210 12599999999999999998876
Q ss_pred H
Q 006272 210 Y 210 (652)
Q Consensus 210 ~ 210 (652)
.
T Consensus 427 ~ 427 (802)
T 2xzl_A 427 L 427 (802)
T ss_dssp T
T ss_pred h
Confidence 4
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.83 E-value=7.5e-05 Score=84.63 Aligned_cols=68 Identities=24% Similarity=0.214 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.+++.|.+|+..++.+.-+++.||+|||||.+..- ++..+.... +.++|+++||...+.++.+.+...
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~~~-----------~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQG-----------NGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHTTC-----------SSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHHcC-----------CCcEEEEcCcHHHHHHHHHHHHHh
Confidence 46899999999999888899999999999986543 344444311 225999999999999988887653
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.74 E-value=0.00061 Score=76.14 Aligned_cols=72 Identities=22% Similarity=0.174 Sum_probs=55.5
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
..+++-|.+++.. ....++|.|+.|||||.+..--+...+..... ..-++|++++|+..+.++.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~---------~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC---------SPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC---------CGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC---------ChhhEEEEeccHHHHHHHHHHHHH
Confidence 4689999999973 36789999999999999766656555544221 112599999999999999999987
Q ss_pred Hhc
Q 006272 210 YGG 212 (652)
Q Consensus 210 ~~~ 212 (652)
+..
T Consensus 77 ~~~ 79 (647)
T 3lfu_A 77 LMG 79 (647)
T ss_dssp HHC
T ss_pred Hhc
Confidence 643
No 103
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=97.43 E-value=0.00024 Score=54.74 Aligned_cols=69 Identities=6% Similarity=0.044 Sum_probs=52.9
Q ss_pred EEEEEecCCC-ccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecChhhHHHHHhhcc----CCCceeeeec
Q 006272 517 VTVVLEAGKP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGAD----NAANVSLEVL 588 (652)
Q Consensus 517 ~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~~~a~~~~~~~~----~~~~i~l~~~ 588 (652)
++++|+.|++ ...|+++.++|++..+.. ..+|++|++.+ .++||++|.+.+..+...+. .++.+.++.+
T Consensus 1 ~~~~i~~Grk~~~~p~~ivg~i~~~~gi~-~~~IG~I~i~d--~~s~v~v~~~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 1 MKLYFNGGKKKKIRAVDFVGTIAKIDGVS-ADDIGIITIMD--NASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp CEEEESCCCC----CHHHHHHHHTSTTCC-GGGEEEEEECS--SCEEEEECTTCHHHHHHHHTTCCC---CCCEEEC
T ss_pred CEEEEeCCCccCCCHHHHHHHHHHccCCC-hhhccEEEEeC--CcEEEEECHHHHHHHHHHhccccCcCceEEEEEC
Confidence 4789999998 789999999999987754 46999999999 79999999999999998876 3344444443
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.29 E-value=0.0023 Score=65.64 Aligned_cols=71 Identities=13% Similarity=0.022 Sum_probs=55.5
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.|+|+|...+..+...+-+++..+-+.|||.+....++..+.... +..+++++||+..|..+.+.+..+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-----------g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----------DKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSS-----------SCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCC-----------CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 689999999987755577999999999999877666665444321 235999999999999888887766
Q ss_pred hc
Q 006272 211 GG 212 (652)
Q Consensus 211 ~~ 212 (652)
..
T Consensus 232 i~ 233 (385)
T 2o0j_A 232 IE 233 (385)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.05 E-value=0.0047 Score=67.84 Aligned_cols=132 Identities=11% Similarity=0.077 Sum_probs=82.4
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.|+|+|...+..+-..+-+++..+-++|||.+....++..+...+ +..++++.|++..|..+.+.++.+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-----------~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----------DKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-----------SCEEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHHHHHHH
Confidence 579999999987755678999999999999877655555554322 235999999999999999888877
Q ss_pred hcCCC--ce--EEEEeCCcchHHHHHHhcCCCcEEEeC--cHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHH
Q 006272 211 GGAVG--LT--SCCLYGGAPYHAQEFKLKKGIDVVIGT--PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (652)
Q Consensus 211 ~~~~~--~~--~~~~~gg~~~~~~~~~~~~~~~Ilv~T--p~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~ 284 (652)
....+ +. .... .... ..+..+..|.+.+ |+.+.- .+++++|+||+|.+-+. ...+..
T Consensus 232 i~~~p~~~~~~~~~~-~~~~-----i~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~~--~~l~~~ 294 (592)
T 3cpe_A 232 IELLPDFLQPGIVEW-NKGS-----IELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNF--HDSWLA 294 (592)
T ss_dssp HTTSCTTTSCCEEEE-CSSE-----EEETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTTH--HHHHHH
T ss_pred HHhChHhhccccccC-CccE-----EEecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCch--hHHHHH
Confidence 65433 11 1101 1000 0112334444432 443322 13678999999987442 234444
Q ss_pred HHHhcc
Q 006272 285 ILGKVE 290 (652)
Q Consensus 285 i~~~~~ 290 (652)
+...+.
T Consensus 295 ~~~~l~ 300 (592)
T 3cpe_A 295 IQPVIS 300 (592)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 444443
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.87 E-value=0.0048 Score=56.26 Aligned_cols=20 Identities=35% Similarity=0.370 Sum_probs=16.8
Q ss_pred cCCcEEEEccCCCCchhhhH
Q 006272 145 DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~ 164 (652)
.++.+++.+|+|+|||....
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46889999999999997543
No 107
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.72 E-value=0.011 Score=58.57 Aligned_cols=130 Identities=13% Similarity=0.067 Sum_probs=85.1
Q ss_pred chhhhhhHHHHHHhhC-CCCeEEEEecchhHHHHHHHhcC----CCcccccccchHHHHHHHhhhcCCCceEEEEccccc
Q 006272 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (652)
Q Consensus 346 ~~~~~~~l~~ll~~~~-~~~~~iVF~~s~~~~~~l~~~l~----~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~ 420 (652)
.+.|+.+|..++..+. .+.++|||++.....+-|..++. ....+.|.... .+.+. .+..+.+.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~-~~~k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK-SAAAA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh-hhhhc----ccCCceEEEEECCCC
Confidence 5678888988887764 56799999999999999999887 33456666333 22111 234555655566666
Q ss_pred cCCC-----CCCccEEEEcCCCCCHHHH-HHHhhhcccCC---CcccceeeccCCcchHHHHHHHHHHH
Q 006272 421 RGLD-----INDVQLIIQCEPPRDVEAY-IHRSGRTGRAG---VEAAETITQVSDSVIPAFKSAAEELL 480 (652)
Q Consensus 421 ~Gld-----i~~v~~VI~~~~p~s~~~y-~qr~GR~gR~g---~~~~~~i~~~~~~~~~~~~~~~~~~~ 480 (652)
-|++ +...+.||.||.-+++..= +|.+-|+.|.| ..-..++-++.....+...-.+-+.+
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~~~ 250 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGKKF 250 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHHHT
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccCCC
Confidence 6675 6789999999999998874 89888888874 23345555666666665554444443
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.64 E-value=0.0016 Score=59.79 Aligned_cols=40 Identities=20% Similarity=0.057 Sum_probs=27.0
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 197 (652)
.++-.++.+++|+|||+..+--+......+ .+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g-------------~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGK-------------KKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTT-------------CEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCC-------------CeEEEEeecc
Confidence 356678999999999987654444333332 1488898873
No 109
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.54 E-value=0.007 Score=62.86 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=53.3
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcch
Q 006272 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~ 227 (652)
-.++.|+.|||||..+. +.+.. . ..+|++||++++..+.+.+...+.
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~~~-~-------------~~lVlTpT~~aa~~l~~kl~~~~~--------------- 209 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRVNF-E-------------EDLILVPGRQAAEMIRRRANASGI--------------- 209 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHCCT-T-------------TCEEEESCHHHHHHHHHHHTTTSC---------------
T ss_pred EEEEEcCCCCCHHHHHH----HHhcc-C-------------CeEEEeCCHHHHHHHHHHhhhcCc---------------
Confidence 47899999999998543 22211 1 269999999999888877643210
Q ss_pred HHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC
Q 006272 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277 (652)
Q Consensus 228 ~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g 277 (652)
.....+-|.|-+.++- ..........++||||||- |++.+
T Consensus 210 -------~~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~s-m~~~~ 249 (446)
T 3vkw_A 210 -------IVATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGL-MLHTG 249 (446)
T ss_dssp -------CCCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGG-GSCHH
T ss_pred -------cccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcc-cCCHH
Confidence 0012234667655432 1122222347899999998 44544
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.46 E-value=0.0061 Score=56.06 Aligned_cols=39 Identities=18% Similarity=0.081 Sum_probs=27.2
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccH
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 197 (652)
|+=.++.+++|||||++.+--+......+. +++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~-------------kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQ-------------KIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC-------------CEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC-------------EEEEEEecc
Confidence 456789999999999876654444443332 489999973
No 111
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.40 E-value=0.0075 Score=67.98 Aligned_cols=71 Identities=18% Similarity=0.123 Sum_probs=54.7
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 130 ~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
..++|-|.+++.. ....++|.|..|||||.+..--+...+..... ...++|+|+.|+..|.++.+.+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~---------~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV---------APWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC---------CGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC---------CHHHeEEEeccHHHHHHHHHHHHH
Confidence 4689999999976 35789999999999998766666655553211 112599999999999999988877
Q ss_pred Hh
Q 006272 210 YG 211 (652)
Q Consensus 210 ~~ 211 (652)
+.
T Consensus 79 ~l 80 (724)
T 1pjr_A 79 LL 80 (724)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 112
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.40 E-value=0.0062 Score=57.43 Aligned_cols=91 Identities=15% Similarity=0.030 Sum_probs=53.3
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCC
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg 224 (652)
.|.-+++.+++|+|||++.+-.+......+. +++++.|...- . . ...+....++.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~-------------kVli~~~~~d~--r-~--~~~i~srlG~~------- 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADV-------------KYLVFKPKIDT--R-S--IRNIQSRTGTS------- 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTC-------------CEEEEEECCCG--G-G--CSSCCCCCCCS-------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCC-------------EEEEEEeccCc--h-H--HHHHHHhcCCC-------
Confidence 4556889999999999876555544443332 48888886420 0 0 00111111111
Q ss_pred cchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhh
Q 006272 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (652)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~ 273 (652)
...+.+.+...++..+.... .-..+++|||||++.+
T Consensus 66 ------------~~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 66 ------------LPSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp ------------SCCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred ------------ccccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 02344567777777776432 2345789999999965
No 113
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.39 E-value=0.0034 Score=70.30 Aligned_cols=70 Identities=20% Similarity=0.150 Sum_probs=53.4
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.++|-|.+++... +..++|.|+.|||||.+..--+...+..... ...++|+|+.|+..|.++.+.+..+
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~---------~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---------QARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC---------CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCC---------CHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4789999999753 6789999999999998766555555543111 1125999999999999999998876
Q ss_pred h
Q 006272 211 G 211 (652)
Q Consensus 211 ~ 211 (652)
.
T Consensus 71 l 71 (673)
T 1uaa_A 71 L 71 (673)
T ss_dssp S
T ss_pred c
Confidence 4
No 114
>3i31_A Heat resistant RNA dependent ATPase; RNA helicase, RNA recognition motif, ATP-binding, helicase, nucleotide-binding; 1.80A {Thermus thermophilus}
Probab=96.16 E-value=0.011 Score=44.29 Aligned_cols=78 Identities=21% Similarity=0.131 Sum_probs=58.3
Q ss_pred ccccccccCCCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecChhhHHHHHhhccCCCcee
Q 006272 505 KSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVS 584 (652)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~~~a~~~~~~~~~~~~i~ 584 (652)
+.+|++++.++|+|+.+.+-+- +..-+...|++. |. +||+|.... .++|+|+++++.. +-..+.
T Consensus 2 ~~~SLLTGEEGw~Tlkl~G~rL--S~~R~VAlLk~a-G~----~iGkI~~~~--~gayaDlr~e~l~-------~~~~~~ 65 (88)
T 3i31_A 2 AERSLLTGEEGWRTYKATGPRL--SLPRLVALLKGQ-GL----EVGKVAEAE--GGFYVDLRPEARP-------EVAGLR 65 (88)
T ss_dssp CCBCTTTCCBSCEEEEEECTTC--CHHHHHHHHHHT-TC----CEEEEEEET--TEEEEEECTTCCC-------CCTTCE
T ss_pred CcccccccCcceEEEEEecccc--cHHHHHHHHHHc-cc----ccccEEecc--ceeEEecChHHcc-------ccccce
Confidence 4678999999999999887553 333445777773 32 899999877 7899999998776 346788
Q ss_pred eeeccCCCcchhhc
Q 006272 585 LEVLKQLPPLQERE 598 (652)
Q Consensus 585 l~~~~~lp~~~~~~ 598 (652)
++++..+|.+.+.+
T Consensus 66 ~e~A~~v~~~~E~p 79 (88)
T 3i31_A 66 LEPARRVEGLLEIP 79 (88)
T ss_dssp EEECCSCCCCC---
T ss_pred ehhhhhccccccCC
Confidence 99999888766543
No 115
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.13 E-value=0.0067 Score=66.24 Aligned_cols=113 Identities=14% Similarity=0.139 Sum_probs=76.4
Q ss_pred CChHHHHHHHHHHhc--CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~--~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~ 208 (652)
.+|.-|.+++..++. ....++.|+-|.|||.+..+.+-.. .. .++|.+|+.+-+..+.+...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-~~---------------~~~vtAP~~~a~~~l~~~~~ 238 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI-AG---------------RAIVTAPAKASTDVLAQFAG 238 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS-SS---------------CEEEECSSCCSCHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH-Hh---------------CcEEECCCHHHHHHHHHHhh
Confidence 679999999988875 3457999999999997766655432 21 26999999876654433221
Q ss_pred HHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHh
Q 006272 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (652)
Q Consensus 209 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~ 288 (652)
. .|-+..|..+.. .+...++||||||=.+- .+.+..++..
T Consensus 239 ~-----------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~ 278 (671)
T 2zpa_A 239 E-----------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSR 278 (671)
T ss_dssp G-----------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTT
T ss_pred C-----------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhh
Confidence 0 144556765432 24458999999999764 5566666643
Q ss_pred ccCCCCceEEEEcccCC
Q 006272 289 VEDANKVQTLLFSATLP 305 (652)
Q Consensus 289 ~~~~~~~q~l~~SAT~~ 305 (652)
...++||.|+.
T Consensus 279 ------~~~v~~~tTv~ 289 (671)
T 2zpa_A 279 ------FPRTLLTTTVQ 289 (671)
T ss_dssp ------SSEEEEEEEBS
T ss_pred ------CCeEEEEecCC
Confidence 23678888864
No 116
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.95 E-value=0.038 Score=55.55 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
+..+++.||+|+|||....
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3679999999999997543
No 117
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=95.83 E-value=0.0024 Score=60.88 Aligned_cols=71 Identities=8% Similarity=-0.046 Sum_probs=45.9
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC------CceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~------~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
...+|+|..-....+..+|..++.. ++. ..|..+.+..|. .|+||++.. +.|..++..++ .++.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~---~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHS-LGV---NDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHT-TTC---CCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-HCC---cceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 4457888876665667777666655 341 134445554442 589999988 67778877766 66777
Q ss_pred eeeecc
Q 006272 584 SLEVLK 589 (652)
Q Consensus 584 ~l~~~~ 589 (652)
.+..+.
T Consensus 143 ~V~~a~ 148 (229)
T 3q2s_C 143 VVTPVN 148 (229)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 777765
No 118
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.77 E-value=0.015 Score=53.96 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=27.8
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHH
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptre 198 (652)
|+=.++.++.|||||++.+--+......+. +++|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~-------------kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQ-------------HAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC-------------CEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC-------------EEEEEEeccC
Confidence 444678999999999876665555554433 4899999753
No 119
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.72 E-value=0.032 Score=51.68 Aligned_cols=99 Identities=16% Similarity=0.089 Sum_probs=51.4
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCC
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg 224 (652)
.|.-.++.++.|||||+..+--+......+ .+++|+.|...-- +. ...+....++..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g-------------~kvli~kp~~D~R---~~-~~~I~Sr~G~~~------ 83 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAK-------------QKVVVFKPAIDDR---YH-KEKVVSHNGNAI------ 83 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTT-------------CCEEEEEEC---------------CBTTBCC------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcC-------------CceEEEEeccCCc---ch-hhhHHHhcCCce------
Confidence 355678999999999986554444333332 2489999964310 00 011222222221
Q ss_pred cchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHH
Q 006272 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (652)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~ 286 (652)
..+.|..+..+++.+ ..++++|+||||+-+ +....+.+..+.
T Consensus 84 -------------~a~~v~~~~di~~~i------~~~~dvV~IDEaQFf-~~~~v~~l~~la 125 (219)
T 3e2i_A 84 -------------EAINISKASEIMTHD------LTNVDVIGIDEVQFF-DDEIVSIVEKLS 125 (219)
T ss_dssp -------------EEEEESSGGGGGGSC------CTTCSEEEECCGGGS-CTHHHHHHHHHH
T ss_pred -------------eeEEeCCHHHHHHHH------hcCCCEEEEechhcC-CHHHHHHHHHHH
Confidence 123444444333322 246789999999965 333444555544
No 120
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.072 Score=53.01 Aligned_cols=27 Identities=7% Similarity=-0.044 Sum_probs=19.6
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
.+.++++.+|+|+|||++.-. ++..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 346899999999999986543 344443
No 121
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.69 E-value=0.021 Score=57.71 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHh----cCC---cEEEEccCCCCchhhhHHHHHHHHh
Q 006272 132 LFPIQAMTFDMVL----DGS---DLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 132 ~~~~Q~~~i~~~l----~~~---dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
++|||.+++..+. .++ -+++.||.|+|||..... +...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHh
Confidence 4677877765553 343 489999999999986543 334443
No 122
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.41 E-value=0.012 Score=51.72 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCCchhhh
Q 006272 145 DGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~ 163 (652)
.+..+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6788999999999999743
No 123
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.38 E-value=0.072 Score=51.92 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=15.3
Q ss_pred CcEEEEccCCCCchhhhH
Q 006272 147 SDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~ 164 (652)
..+++.+|+|+|||....
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 569999999999998543
No 124
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.32 E-value=0.022 Score=54.24 Aligned_cols=20 Identities=10% Similarity=-0.017 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCCchhhhH
Q 006272 145 DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~ 164 (652)
.++.+++.||+|+|||....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 46789999999999998543
No 125
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.29 E-value=0.029 Score=51.23 Aligned_cols=39 Identities=15% Similarity=0.002 Sum_probs=27.6
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEecc
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt 196 (652)
.++=.++.++.|||||.-.+-.+-+....+. +++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~-------------kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQY-------------KCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------CEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCC-------------eEEEEccc
Confidence 3566889999999999755555444444432 48999887
No 126
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.21 E-value=0.026 Score=67.55 Aligned_cols=71 Identities=20% Similarity=0.169 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 131 ~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.+|+-|.++|..- +++++|.|..|||||.+.+--++..+...... ...-++|+|++|+..|..+.+.+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~-------~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENP-------IDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSC-------CCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCC-------CCccceEEEeccHHHHHHHHHHHHHH
Confidence 5899999999764 88999999999999998777777777653211 11225999999999999999888753
No 127
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.16 E-value=0.066 Score=55.68 Aligned_cols=56 Identities=11% Similarity=0.214 Sum_probs=37.7
Q ss_pred CCCceEEecCcchhhh---hcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhc
Q 006272 259 LSSLKFRVLDEADEML---RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (652)
Q Consensus 259 l~~~~~lViDEah~~l---~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (652)
..+.++||||++-++. +..+...+..+...+.. ..-+++++|+........+..|.
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~p--d~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKP--DDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCC--SEEEEEEEGGGGGGGHHHHHHHH
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCC--cceEEEEeCccchHHHHHHHHHh
Confidence 3578899999998643 34466777777776643 45667788887665555555544
No 128
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=95.07 E-value=0.056 Score=47.74 Aligned_cols=70 Identities=9% Similarity=-0.033 Sum_probs=46.9
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC------CceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~------~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
...+|+|..-....+..+|..++..+ + .|..+.+..+. .++||++.. +.|..++..++ .+..+
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 111 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKS-G-----DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRII 111 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGG-S-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 45688887666556677776666553 2 34456654432 489999988 77777777666 66677
Q ss_pred eeeeccC
Q 006272 584 SLEVLKQ 590 (652)
Q Consensus 584 ~l~~~~~ 590 (652)
.++.++.
T Consensus 112 ~V~~a~~ 118 (156)
T 1h2v_Z 112 RTDWDAG 118 (156)
T ss_dssp EEEEESC
T ss_pred EEEECCC
Confidence 7777764
No 129
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.00 E-value=0.084 Score=49.51 Aligned_cols=40 Identities=15% Similarity=0.024 Sum_probs=28.9
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 197 (652)
.|+=.++.++.|||||.+.+--+......+. +++|+.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~-------------kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQY-------------KCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTC-------------CEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCC-------------eEEEEeecC
Confidence 3566789999999999876665555544432 489998874
No 130
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=94.72 E-value=0.069 Score=55.90 Aligned_cols=71 Identities=14% Similarity=0.019 Sum_probs=47.1
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
...+|||..-....+..+|..++.. +| .|..+.+..+ .+++||++.. +.|..++..++ .+..|
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~-~G-----~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEV-YG-----PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-cC-----CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEE
Confidence 3468888776655566677666665 33 3444555433 4789999988 67777776766 66778
Q ss_pred eeeeccCC
Q 006272 584 SLEVLKQL 591 (652)
Q Consensus 584 ~l~~~~~l 591 (652)
.+.++...
T Consensus 175 ~V~~a~~~ 182 (437)
T 3pgw_S 175 LVDVERGR 182 (437)
T ss_pred EEEEeCCC
Confidence 88887654
No 131
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.70 E-value=0.067 Score=54.96 Aligned_cols=30 Identities=20% Similarity=0.039 Sum_probs=20.0
Q ss_pred CceEEecCcchhhhhcC-cHHHHHHHHHhcc
Q 006272 261 SLKFRVLDEADEMLRMG-FVEDVELILGKVE 290 (652)
Q Consensus 261 ~~~~lViDEah~~l~~g-f~~~~~~i~~~~~ 290 (652)
...+|||||+|.+.... ....+..++....
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQ 160 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGG
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchh
Confidence 35689999999987552 3455556665543
No 132
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.63 E-value=0.2 Score=46.17 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=18.3
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
+.+++.+|+|+|||.... .+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 789999999999998543 3334443
No 133
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.55 E-value=0.14 Score=53.76 Aligned_cols=40 Identities=13% Similarity=0.282 Sum_probs=23.8
Q ss_pred CceEEecCcchhhhhc-CcHHHHHHHHHhccCCCCceEEEEc
Q 006272 261 SLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFS 301 (652)
Q Consensus 261 ~~~~lViDEah~~l~~-gf~~~~~~i~~~~~~~~~~q~l~~S 301 (652)
+..+|+|||+|.+... .....+..++..+... ..++|+.|
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~-~~~iIitt 234 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDS-GKQIVICS 234 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTT-TCEEEEEE
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 5679999999998753 2344455555544332 34555543
No 134
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.51 E-value=0.43 Score=44.13 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.5
Q ss_pred CcEEEEccCCCCchhhh
Q 006272 147 SDLVGRARTGQGKTLAF 163 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~ 163 (652)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999753
No 135
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.29 E-value=0.13 Score=52.85 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchhhh
Q 006272 146 GSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~ 163 (652)
.+.+++.+|+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999854
No 136
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.14 E-value=0.14 Score=51.38 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=24.0
Q ss_pred CCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 260 ~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
....+|||||+|.+........+..++...+. +.++|+ +++
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~--~~~iI~-~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSS--NCSIII-TAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGG--GCEEEE-EES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCC--CcEEEE-EeC
Confidence 36789999999988522234445555554433 344444 444
No 137
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.93 E-value=0.76 Score=41.21 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhhh
Q 006272 146 GSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~ 163 (652)
...+++.+|+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999754
No 138
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.92 E-value=0.08 Score=52.62 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
+..+++.+|+|+|||....
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999998643
No 139
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.90 E-value=0.2 Score=49.01 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=30.9
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHH-HHHHHH--HhcCCcEEEEccCCCCchhhh
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQ-AMTFDM--VLDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~--~l~~~dvl~~a~TGsGKTl~~ 163 (652)
...|+++.-.+...+.|...-. .+.+ .+.+.. +...+.+++.+|+|+|||...
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3457777666666666654310 1111 112222 234578999999999999754
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.77 E-value=0.31 Score=49.28 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=25.0
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcc
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SA 302 (652)
..+.++|||||+|. ++......+..++...+. ...+|+.|-
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~--~~~~Il~t~ 172 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSK--NIRLIMVCD 172 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT--TEEEEEEES
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC--CCEEEEEeC
Confidence 34678999999998 455455666666666543 444444443
No 141
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.70 E-value=0.39 Score=49.45 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
.+.+|+.+|+|+|||+..-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999998543
No 142
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.70 E-value=0.32 Score=43.67 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
...+++.+|+|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 143
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.52 E-value=0.37 Score=48.39 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=28.4
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHh----cCCcEEEEccCCCCchhhhH
Q 006272 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l----~~~dvl~~a~TGsGKTl~~~ 164 (652)
..|..|.++--.....+.+.. ++.... ....+++.+|+|+|||+...
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 345567776555555554432 122221 22579999999999998543
No 144
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.49 E-value=0.13 Score=48.52 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=16.8
Q ss_pred cCCcEEEEccCCCCchhhhHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVL 165 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~l 165 (652)
.|.-+++.+|+|+|||+....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 567789999999999975433
No 145
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.46 E-value=0.2 Score=49.61 Aligned_cols=43 Identities=12% Similarity=0.285 Sum_probs=25.4
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccCC
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 305 (652)
....+++||||||.|.. .....++..+..++..-+++|.++-+
T Consensus 80 ~~~~kvviIdead~lt~----~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQ----QAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp SSSSEEEEETTGGGBCH----HHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred cCCceEEEeccHHHhCH----HHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 34678999999999853 33344555554433333444555544
No 146
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.46 E-value=0.13 Score=51.04 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
++.+++.||||+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997544
No 147
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.36 E-value=0.51 Score=49.04 Aligned_cols=132 Identities=12% Similarity=0.066 Sum_probs=67.1
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEe--ccHHHHHHHHHHHHHHhcCCCceEEEEeCC
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL--PTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~--PtreLa~q~~~~~~~~~~~~~~~~~~~~gg 224 (652)
.-+++++++|+|||++..-.+. .+.... .+++++. |.|.-+ ++.+..++...++.+.....+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~-~l~~~G------------~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~ 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLAR-YFQKRG------------YKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQE 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH-HHHTTT------------CCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHH-HHHHCC------------CeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCC
Confidence 4588999999999986543332 233221 1244444 344333 344455555555554432221
Q ss_pred cchHHHHHHhcCCCcEEEeCcHHHH-HHHHhCCcCCCCceEEecCcchhhhh-cCcHHHHHHHHHhccCCCCceEEEEcc
Q 006272 225 APYHAQEFKLKKGIDVVIGTPGRIK-DHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSA 302 (652)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~rl~-~~l~~~~~~l~~~~~lViDEah~~l~-~gf~~~~~~i~~~~~~~~~~q~l~~SA 302 (652)
. .|..+. +.+.. ....++++||||.+=++.. ......+..+...... ..-+++++|
T Consensus 165 ~------------------dp~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~p--d~vlLVvDA 222 (443)
T 3dm5_A 165 K------------------DAIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHP--HEVILVIDG 222 (443)
T ss_dssp C------------------CHHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCC--SEEEEEEEG
T ss_pred C------------------CHHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcC--ceEEEEEeC
Confidence 1 122221 11211 1123467889998864421 1234445555555433 445777888
Q ss_pred cCChHHHHHHHHhc
Q 006272 303 TLPSWVKHISTKFL 316 (652)
Q Consensus 303 T~~~~~~~~~~~~~ 316 (652)
|........+..|.
T Consensus 223 ~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 223 TIGQQAYNQALAFK 236 (443)
T ss_dssp GGGGGHHHHHHHHH
T ss_pred CCchhHHHHHHHHH
Confidence 87666555555444
No 148
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.95 E-value=0.2 Score=51.21 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
+..+++.||+|+|||....
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999998543
No 149
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.83 E-value=0.19 Score=51.63 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.8
Q ss_pred cEEEEccCCCCchhhhH
Q 006272 148 DLVGRARTGQGKTLAFV 164 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~ 164 (652)
.+++.||+|+|||...-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999998543
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.61 E-value=0.87 Score=42.63 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=14.1
Q ss_pred cEEEEccCCCCchhhh
Q 006272 148 DLVGRARTGQGKTLAF 163 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~ 163 (652)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999754
No 151
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=92.33 E-value=0.59 Score=37.60 Aligned_cols=70 Identities=7% Similarity=-0.019 Sum_probs=46.4
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeec
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVL 588 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~ 588 (652)
....+|+|..-....+..++..++..+ + .|..+.+.. .++||++.. +.|..++..++ .++.+.+..+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~-G-----~i~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQF-G-----KLERVKKLK--DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHH-S-----CEEEEEECS--SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEEEEEC--CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 345677777655556677776666653 2 344566665 589999987 67777777665 6667777777
Q ss_pred cCC
Q 006272 589 KQL 591 (652)
Q Consensus 589 ~~l 591 (652)
...
T Consensus 81 ~~~ 83 (103)
T 2dgu_A 81 KPP 83 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 152
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.24 E-value=0.22 Score=56.10 Aligned_cols=82 Identities=22% Similarity=0.277 Sum_probs=65.2
Q ss_pred HHHHHhhCCCCeEEEEecchhHHHHHHHhcC--------CCcccccccchHHHHHHHhhhcCCCceEEEEcc-ccccCCC
Q 006272 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-VAARGLD 424 (652)
Q Consensus 354 ~~ll~~~~~~~~~iVF~~s~~~~~~l~~~l~--------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~-~~~~Gld 424 (652)
..++.....+.++||.++|+.-+.+.+..+. .+..+||+++..+|..++..+.+|..+|+|+|. .+...++
T Consensus 408 l~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~ 487 (780)
T 1gm5_A 408 LAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVH 487 (780)
T ss_dssp HHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCC
T ss_pred HHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhh
Confidence 3333443456899999999998887776553 577899999999999999999999999999995 4455688
Q ss_pred CCCccEEEEcC
Q 006272 425 INDVQLIIQCE 435 (652)
Q Consensus 425 i~~v~~VI~~~ 435 (652)
+.++.+||.-.
T Consensus 488 ~~~l~lVVIDE 498 (780)
T 1gm5_A 488 FKNLGLVIIDE 498 (780)
T ss_dssp CSCCCEEEEES
T ss_pred ccCCceEEecc
Confidence 88999988533
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.12 E-value=0.46 Score=47.29 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=14.7
Q ss_pred cEEEEccCCCCchhhhH
Q 006272 148 DLVGRARTGQGKTLAFV 164 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~ 164 (652)
.+++.||+|+|||....
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999997543
No 154
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.11 E-value=0.36 Score=45.86 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=31.1
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
.|.-+++.+++|+|||...+..+...+..+. .++++.- .+...++.+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~-------------~v~~~~~-e~~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE-------------PGIYVAL-EEHPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTC-------------CEEEEES-SSCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCC-------------eEEEEEc-cCCHHHHHHHHHH
Confidence 5678999999999999865444444333221 2666653 3334555555543
No 155
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.84 E-value=1.7 Score=39.50 Aligned_cols=141 Identities=16% Similarity=0.144 Sum_probs=68.4
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHH-HHHHHHHHHHHHhcCCCceEEEEeCC
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE-LAKQVHEDFDVYGGAVGLTSCCLYGG 224 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptre-La~q~~~~~~~~~~~~~~~~~~~~gg 224 (652)
.-.+++..++|.|||.+++--++..+..+. +++|+.=.+. .-.--.+.+..+ ++.+...--+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~-------------rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~g 90 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK-------------NVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATG 90 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC-------------CEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC-------------eEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccc
Confidence 357999999999999988777777776543 4777742221 000000112222 2222211111
Q ss_pred cchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCc--HHHHHHHHHhccCCCCceEEEEcc
Q 006272 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF--VEDVELILGKVEDANKVQTLLFSA 302 (652)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf--~~~~~~i~~~~~~~~~~q~l~~SA 302 (652)
-....+...- ++ ......+..... .+.-..+++|||||+-..+..++ .+.+..++...+. ..-+|+.+-
T Consensus 91 f~~~~~~~~~----~~--~~a~~~l~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~--~~~vIlTGr 161 (196)
T 1g5t_A 91 FTWETQNREA----DT--AACMAVWQHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPG--HQTVIITGR 161 (196)
T ss_dssp CCCCGGGHHH----HH--HHHHHHHHHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCT--TCEEEEECS
T ss_pred cccCCCCcHH----HH--HHHHHHHHHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcC--CCEEEEECC
Confidence 0000000000 00 000111222221 12235689999999988777663 3455555555443 445555555
Q ss_pred cCChHHHHHH
Q 006272 303 TLPSWVKHIS 312 (652)
Q Consensus 303 T~~~~~~~~~ 312 (652)
-.|+++..++
T Consensus 162 ~ap~~l~e~A 171 (196)
T 1g5t_A 162 GCHRDILDLA 171 (196)
T ss_dssp SCCHHHHHHC
T ss_pred CCcHHHHHhC
Confidence 5666655443
No 156
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=91.73 E-value=1.4 Score=38.71 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=54.5
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCceE
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~ 264 (652)
++||.|+++..+..+++.|... ++.+..++|+.+.......+ ....+|+|+|. . ....+++.++++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gld~~~~~~ 106 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----V-AARGIDIENISL 106 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTTTCCCSCCSE
T ss_pred cEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----h-hhcCCchhcCCE
Confidence 4899999999999999988774 57889999998766554433 34678999993 2 234567888888
Q ss_pred EecCcc
Q 006272 265 RVLDEA 270 (652)
Q Consensus 265 lViDEa 270 (652)
||.-..
T Consensus 107 Vi~~~~ 112 (163)
T 2hjv_A 107 VINYDL 112 (163)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 886443
No 157
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.55 E-value=1.5 Score=44.37 Aligned_cols=17 Identities=24% Similarity=0.128 Sum_probs=14.4
Q ss_pred cEEEEccCCCCchhhhH
Q 006272 148 DLVGRARTGQGKTLAFV 164 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~ 164 (652)
.+++.||+|+|||....
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999998543
No 158
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.33 E-value=1.4 Score=43.73 Aligned_cols=18 Identities=28% Similarity=0.124 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchhhh
Q 006272 146 GSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~ 163 (652)
...+++.+|+|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999754
No 159
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=91.29 E-value=1.6 Score=38.51 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=53.6
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCceE
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~ 264 (652)
++||.|+++.-+..++..+... ++.+..++|+.+.......+ .....|+|+|. . ....+++.++++
T Consensus 32 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~G~d~~~~~~ 101 (165)
T 1fuk_A 32 QAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----L-LARGIDVQQVSL 101 (165)
T ss_dssp CEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----G-GTTTCCCCSCSE
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----h-hhcCCCcccCCE
Confidence 4999999999999999988774 57888999998866555443 34679999993 2 234567888888
Q ss_pred EecCc
Q 006272 265 RVLDE 269 (652)
Q Consensus 265 lViDE 269 (652)
||.-.
T Consensus 102 Vi~~~ 106 (165)
T 1fuk_A 102 VINYD 106 (165)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 87643
No 160
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.24 E-value=0.55 Score=46.86 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=30.1
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-----cCCcEEEEccCCCCchhhhH
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL-----DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l-----~~~dvl~~a~TGsGKTl~~~ 164 (652)
+..|+++.-...+.+.|...-. .|.. .|.+. ..+.+++.+|+|+|||+..-
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 3457777766666666654310 1111 11111 23579999999999998543
No 161
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.00 E-value=0.93 Score=46.01 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
++.+++.||+|+|||....
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999998543
No 162
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.82 E-value=0.57 Score=47.56 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCCchhhhH
Q 006272 145 DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~ 164 (652)
..+.+++.+|+|+|||+..-
T Consensus 116 ~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34689999999999998543
No 163
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=90.77 E-value=1.2 Score=40.45 Aligned_cols=71 Identities=15% Similarity=0.292 Sum_probs=54.2
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCceE
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~ 264 (652)
++||.|+++.-+..+++.|... ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++.++++
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~Gldi~~v~~ 125 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS-KGLDFPAIQH 125 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH-TTCCCCCCSE
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh-cCCCcccCCE
Confidence 5999999999999999988775 57888999998876555444 24689999992 222 3567888888
Q ss_pred EecCc
Q 006272 265 RVLDE 269 (652)
Q Consensus 265 lViDE 269 (652)
||.-+
T Consensus 126 VI~~d 130 (191)
T 2p6n_A 126 VINYD 130 (191)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88633
No 164
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.61 E-value=0.49 Score=50.73 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=25.5
Q ss_pred CCceEEecCcchhhhhc--CcHHHHHHHHHhccCCCCceEEEEcccC
Q 006272 260 SSLKFRVLDEADEMLRM--GFVEDVELILGKVEDANKVQTLLFSATL 304 (652)
Q Consensus 260 ~~~~~lViDEah~~l~~--gf~~~~~~i~~~~~~~~~~q~l~~SAT~ 304 (652)
....+|||||+|.+... ++...+..++... ...+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~----~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT----STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC----SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc----CCCEEEEEcCC
Confidence 44578999999998643 2334444444442 34577777664
No 165
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.43 E-value=0.6 Score=46.09 Aligned_cols=56 Identities=11% Similarity=-0.022 Sum_probs=30.2
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEccCCCCchhhhH
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~l~~~dvl~~a~TGsGKTl~~~ 164 (652)
...|+++.-...+.+.|...-. .|.......... +..++.+++.+|+|+|||+..-
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQ-YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH-HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 3457777656666666554300 000000011111 2345789999999999998543
No 166
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.22 E-value=1.3 Score=44.49 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCchhhh
Q 006272 147 SDLVGRARTGQGKTLAF 163 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~ 163 (652)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999754
No 167
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.17 E-value=0.21 Score=49.26 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=18.5
Q ss_pred HhcCCcEEEEccCCCCchhhhHHH
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lp 166 (652)
+..|.-+++.|++|+|||+.....
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~i 55 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQ 55 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 336778999999999999854433
No 168
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.10 E-value=0.94 Score=43.33 Aligned_cols=19 Identities=26% Similarity=0.135 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
.+.+++.+|+|+|||...-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 169
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.04 E-value=2.7 Score=43.14 Aligned_cols=23 Identities=17% Similarity=-0.070 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCCchhhhHHHHH
Q 006272 146 GSDLVGRARTGQGKTLAFVLPIL 168 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil 168 (652)
|.-+++.+|+|+|||......++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHH
Confidence 35689999999999975543333
No 170
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.70 E-value=0.29 Score=46.63 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=27.2
Q ss_pred CCceEEecCcchhhhh-----cCcHHHHHHHHHhccCCCCceEEEEccc
Q 006272 260 SSLKFRVLDEADEMLR-----MGFVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 260 ~~~~~lViDEah~~l~-----~gf~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
.+.++||+||.-.+++ ......+..++..+... .. +++++.-
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~-g~-tii~vtH 180 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-GV-TTILTTE 180 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-CC-EEEEEEC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC-CC-eEEEEEC
Confidence 4678999999998886 44555577777666442 23 4444443
No 171
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=89.57 E-value=2.3 Score=39.31 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=53.8
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCceE
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~ 264 (652)
++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ ....+|+|+|. +....+++.++++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi~~v~~ 102 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDIPQVDL 102 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSCCCBSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCCccCcE
Confidence 4999999999999999988774 57889999998877665444 34688999993 2334577888888
Q ss_pred Eec
Q 006272 265 RVL 267 (652)
Q Consensus 265 lVi 267 (652)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 172
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.39 E-value=0.41 Score=48.58 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
.+.+++.+|+|+|||+..-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3579999999999998543
No 173
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.32 E-value=1.2 Score=39.85 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=53.3
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCceE
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~ 264 (652)
++||.|+++..+..++..+.. .++.+..++|+.+.......+ ....+|+|+|. +....+++..+++
T Consensus 36 ~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~~~ 105 (175)
T 2rb4_A 36 QAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQVTI 105 (175)
T ss_dssp EEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTTEEE
T ss_pred CEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcccCCE
Confidence 699999999999999988876 457889999998876655443 34689999993 2234577888999
Q ss_pred Eec
Q 006272 265 RVL 267 (652)
Q Consensus 265 lVi 267 (652)
||.
T Consensus 106 Vi~ 108 (175)
T 2rb4_A 106 VVN 108 (175)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 174
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.26 E-value=0.66 Score=48.66 Aligned_cols=27 Identities=26% Similarity=0.108 Sum_probs=19.2
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESL 171 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l 171 (652)
.|.-+++.|++|+|||...+-.+.+..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456689999999999975444444433
No 175
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.20 E-value=0.23 Score=49.77 Aligned_cols=51 Identities=25% Similarity=0.203 Sum_probs=30.6
Q ss_pred HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHH
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~ 207 (652)
+..|.-+++.|++|+|||...+-.+.+....+ ..++|++.- .-..|+...+
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g-------------~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDD-------------RGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-------------CEEEEEESS-SCHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-------------CeEEEEeCC-CCHHHHHHHH
Confidence 33556799999999999975544444433322 136777642 3344555444
No 176
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.13 E-value=0.38 Score=50.72 Aligned_cols=29 Identities=17% Similarity=0.028 Sum_probs=20.3
Q ss_pred HhcCCcEEEEccCCCCchhhhHHHHHHHH
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLPILESL 171 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lpil~~l 171 (652)
+..|.-+++.|++|+|||...+..+....
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33566799999999999975544444333
No 177
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.67 E-value=1.1 Score=44.23 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=14.1
Q ss_pred cEEEEccCCCCchhhh
Q 006272 148 DLVGRARTGQGKTLAF 163 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~ 163 (652)
.+++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999754
No 178
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=88.63 E-value=1.7 Score=38.73 Aligned_cols=71 Identities=7% Similarity=0.131 Sum_probs=53.6
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCceE
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~ 264 (652)
++||.|+++..+..+++.+... ++.+..++|+.+.......+ .....|+|+|. +....+++.++++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldi~~~~~ 102 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIERVNI 102 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS------CCSTTCCGGGCSE
T ss_pred cEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC------chhcCcchhhCCE
Confidence 4999999999999999988774 57888999998776655443 34689999994 1223567788888
Q ss_pred EecCc
Q 006272 265 RVLDE 269 (652)
Q Consensus 265 lViDE 269 (652)
||.-.
T Consensus 103 Vi~~d 107 (172)
T 1t5i_A 103 AFNYD 107 (172)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 87644
No 179
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=88.44 E-value=0.34 Score=50.85 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCchhhhH
Q 006272 147 SDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~ 164 (652)
..+++.+|+|+|||...-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 469999999999998543
No 180
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=88.37 E-value=0.38 Score=43.04 Aligned_cols=121 Identities=11% Similarity=0.104 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHhcC--CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 133 FPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 133 ~~~Q~~~i~~~l~~--~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
.+-|..++..++.. +-.++.++-|++||...+.-++...... +-++.||+|+..-.....+..
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~------------Gr~V~vLAp~~~s~~~l~~~~--- 100 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ------------GREVQIIAADRRSQMNMKQDE--- 100 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT------------TCCEEEECSTTHHHHHHSCTT---
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc------------CeEEEEEcCchHHHHHHHhhc---
Confidence 46789999888744 4578899999999988654444333322 235999999976655433321
Q ss_pred hcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcCcHHHHHHHHHhcc
Q 006272 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (652)
Q Consensus 211 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~ 290 (652)
++.-.. + |- ..+......|..=+++|||||-.|. ..++..|+..-.
T Consensus 101 ----~l~~~t--------------------~--t~----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~ 146 (189)
T 2l8b_A 101 ----RLSGEL--------------------I--TG----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAA 146 (189)
T ss_dssp ----TCSSCS--------------------S--ST----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHH
T ss_pred ----CcCcce--------------------e--eh----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHH
Confidence 111000 0 10 1122233334555689999999987 566666666554
Q ss_pred CCCCceEEEEccc
Q 006272 291 DANKVQTLLFSAT 303 (652)
Q Consensus 291 ~~~~~q~l~~SAT 303 (652)
.. +.|+||+--+
T Consensus 147 ~~-naqvvll~~~ 158 (189)
T 2l8b_A 147 RH-NVQVLITDSG 158 (189)
T ss_dssp HT-TCCEEEEESS
T ss_pred hc-CCEEEEeCCc
Confidence 43 5788877433
No 181
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=88.04 E-value=2.2 Score=44.94 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=39.2
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhc
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~ 212 (652)
.+..+.+.+-||||||++..-. ++.. .. .+|||+|+..+|.|++++++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l-~~~~-~~--------------p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEI-AERH-AG--------------PVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHH-HHHS-SS--------------CEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHHH-HHHh-CC--------------CEEEEeCCHHHHHHHHHHHHhhCC
Confidence 4567899999999999854322 2221 11 279999999999999999998854
No 182
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.00 E-value=1.3 Score=44.46 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=24.0
Q ss_pred CCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcccC
Q 006272 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (652)
Q Consensus 260 ~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~ 304 (652)
...+++|+||+|.|... ....+..++...+. ...++ +.++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~--~~~~i-l~~n~ 149 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTK--NTRFC-VLANY 149 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTT--TEEEE-EEESC
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCC--CeEEE-EEecC
Confidence 45789999999988532 24445555555433 34444 44443
No 183
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=87.84 E-value=1.4 Score=36.74 Aligned_cols=70 Identities=9% Similarity=0.049 Sum_probs=47.0
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
...+|+|..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|..++..++ .+..+
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEY-G-----EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTT-S-----CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 34688888766656677777666653 3 3444555443 4799999988 67777776655 66777
Q ss_pred eeeeccC
Q 006272 584 SLEVLKQ 590 (652)
Q Consensus 584 ~l~~~~~ 590 (652)
.++.+..
T Consensus 95 ~v~~a~~ 101 (126)
T 3ex7_B 95 SVDWCFV 101 (126)
T ss_dssp EEEESEE
T ss_pred EEEEecC
Confidence 7777753
No 184
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.63 E-value=0.87 Score=45.10 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=14.4
Q ss_pred cEEEEccCCCCchhhhH
Q 006272 148 DLVGRARTGQGKTLAFV 164 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~ 164 (652)
.+++.||+|+|||....
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 49999999999997543
No 185
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.45 E-value=1.6 Score=41.10 Aligned_cols=24 Identities=21% Similarity=-0.035 Sum_probs=18.6
Q ss_pred cCCcEEEEccCCCCchhhhHHHHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPIL 168 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil 168 (652)
.|.-+++.+|+|+|||......+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 567799999999999986554443
No 186
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=86.84 E-value=1.5 Score=46.46 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCCchhhhH
Q 006272 145 DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~ 164 (652)
..+.+++.+|+|+|||+..-
T Consensus 237 ~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHH
Confidence 34679999999999998543
No 187
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=86.55 E-value=1.4 Score=46.03 Aligned_cols=54 Identities=20% Similarity=0.087 Sum_probs=29.8
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHH-HH-HHHhcCCcEEEEccCCCCchhhhH
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAM-TF-DMVLDGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~-~i-~~~l~~~dvl~~a~TGsGKTl~~~ 164 (652)
+..|+++.-...+.+.|...-. .|.+.. .+ ......+.+++.+|+|+|||+..-
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 4567777656666666644210 011000 00 011234679999999999998543
No 188
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.48 E-value=1.5 Score=42.53 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=20.2
Q ss_pred HHhcCCcEEEEccCCCCchhhhHHHH
Q 006272 142 MVLDGSDLVGRARTGQGKTLAFVLPI 167 (652)
Q Consensus 142 ~~l~~~dvl~~a~TGsGKTl~~~lpi 167 (652)
-+..|.-+++.+|+|+|||+.....+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 35577889999999999998654443
No 189
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=86.39 E-value=2.1 Score=38.65 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=43.8
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCceE
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~ 264 (652)
++||.|+++.-+..+++.|... ++.+..++|+.+.......+ .....|+|+|. .+ ...+++.++++
T Consensus 48 k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~~~~ 117 (185)
T 2jgn_A 48 LTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLDISNVKH 117 (185)
T ss_dssp CEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSBSE
T ss_pred eEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hh-hcCCCcccCCE
Confidence 5999999999999999988774 57888899887655433332 34688999993 22 23467888888
Q ss_pred Eec
Q 006272 265 RVL 267 (652)
Q Consensus 265 lVi 267 (652)
||.
T Consensus 118 VI~ 120 (185)
T 2jgn_A 118 VIN 120 (185)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 190
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.26 E-value=2.6 Score=43.32 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=14.4
Q ss_pred CcEEE--EccCCCCchhhhH
Q 006272 147 SDLVG--RARTGQGKTLAFV 164 (652)
Q Consensus 147 ~dvl~--~a~TGsGKTl~~~ 164 (652)
..+++ .+++|+|||....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 45788 8999999998543
No 191
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=86.13 E-value=9.3 Score=42.08 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=58.9
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCce
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~ 263 (652)
.++||.|+|+..+..+++.|... ++.+..++|+.+.......+ ....+|+|||. +....+++.+++
T Consensus 446 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip~v~ 515 (661)
T 2d7d_A 446 ERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPEVS 515 (661)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCTTEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccCCCC
Confidence 36999999999999999988874 57788888887765554443 24689999994 234567889999
Q ss_pred EEecCcchhh
Q 006272 264 FRVLDEADEM 273 (652)
Q Consensus 264 ~lViDEah~~ 273 (652)
+||+-+++..
T Consensus 516 lVi~~d~d~~ 525 (661)
T 2d7d_A 516 LVAILDADKE 525 (661)
T ss_dssp EEEETTTTCC
T ss_pred EEEEeCcccc
Confidence 9999998754
No 192
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=85.96 E-value=3 Score=35.37 Aligned_cols=70 Identities=4% Similarity=0.040 Sum_probs=46.1
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCc
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAAN 582 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~ 582 (652)
....+|+|..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|..++..++ .++.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERY-G-----PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHH-S-----CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 345688887665556677777766663 2 3444555433 2589999988 77777777666 5666
Q ss_pred eeeeecc
Q 006272 583 VSLEVLK 589 (652)
Q Consensus 583 i~l~~~~ 589 (652)
+.+..+.
T Consensus 114 l~v~~a~ 120 (139)
T 1u6f_A 114 LKVALAA 120 (139)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 7777765
No 193
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=85.94 E-value=1.5 Score=51.84 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=62.4
Q ss_pred HhhCCCCeEEEEecchhHHHHHHHhcC--------CCcccccccchHHHHHHHhhhcCCCceEEEEc-cccccCCCCCCc
Q 006272 358 RCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT-NVAARGLDINDV 428 (652)
Q Consensus 358 ~~~~~~~~~iVF~~s~~~~~~l~~~l~--------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT-~~~~~Gldi~~v 428 (652)
.....+.+++|.|+|+.-+.+.+..+. .+..+++..+..++..++..+..|..+|+|+| ..+...+.+.++
T Consensus 647 ~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l 726 (1151)
T 2eyq_A 647 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 726 (1151)
T ss_dssp HHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSE
T ss_pred HHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcccccc
Confidence 334467799999999998887776654 46678999999999999999999999999999 556666888899
Q ss_pred cEEEE
Q 006272 429 QLIIQ 433 (652)
Q Consensus 429 ~~VI~ 433 (652)
.+||.
T Consensus 727 ~lvIi 731 (1151)
T 2eyq_A 727 GLLIV 731 (1151)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 88885
No 194
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.62 E-value=1.9 Score=42.95 Aligned_cols=25 Identities=16% Similarity=-0.063 Sum_probs=18.6
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILE 169 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~ 169 (652)
.|.-+++.+++|+|||...+..+.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4577999999999999755444433
No 195
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.55 E-value=0.5 Score=40.73 Aligned_cols=22 Identities=9% Similarity=-0.081 Sum_probs=17.9
Q ss_pred HHhcCCcEEEEccCCCCchhhh
Q 006272 142 MVLDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 142 ~~l~~~dvl~~a~TGsGKTl~~ 163 (652)
.+....++++.+++|+|||..+
T Consensus 23 ~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHHH
T ss_pred HhCCCCcEEEECCCCccHHHHH
Confidence 3456788999999999999743
No 196
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.23 E-value=0.55 Score=40.54 Aligned_cols=22 Identities=9% Similarity=-0.037 Sum_probs=18.2
Q ss_pred HhcCCcEEEEccCCCCchhhhH
Q 006272 143 VLDGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~ 164 (652)
...+.++++.+|+|+|||+.+-
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHH
Confidence 3467889999999999998543
No 197
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=85.20 E-value=0.17 Score=51.35 Aligned_cols=12 Identities=0% Similarity=0.014 Sum_probs=6.5
Q ss_pred CHHHHHHHhhhc
Q 006272 439 DVEAYIHRSGRT 450 (652)
Q Consensus 439 s~~~y~qr~GR~ 450 (652)
++-.|+.+.-+.
T Consensus 152 ~P~~fL~~~~~~ 163 (358)
T 2pk2_A 152 HPHTHVVKCTQL 163 (358)
T ss_dssp CTTHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 455566665443
No 198
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=84.87 E-value=10 Score=41.85 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=57.8
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEeCcHHHHHHHHhCCcCCCCce
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL---K-KGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~---~-~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~ 263 (652)
.++||.|+|+..+..+++.|... ++.+..++++.+.......+ . ...+|+|||. . ....+++.+++
T Consensus 440 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~-l~~GlDip~v~ 509 (664)
T 1c4o_A 440 ERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----L-LREGLDIPEVS 509 (664)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----C-CCTTCCCTTEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----h-hhcCccCCCCC
Confidence 36999999999999999988874 56788888887765554443 2 4589999993 2 23467889999
Q ss_pred EEecCcchhh
Q 006272 264 FRVLDEADEM 273 (652)
Q Consensus 264 ~lViDEah~~ 273 (652)
+||+=+++..
T Consensus 510 lVI~~d~d~~ 519 (664)
T 1c4o_A 510 LVAILDADKE 519 (664)
T ss_dssp EEEETTTTSC
T ss_pred EEEEeCCccc
Confidence 9999888753
No 199
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=84.77 E-value=1.7 Score=43.06 Aligned_cols=53 Identities=17% Similarity=-0.049 Sum_probs=31.9
Q ss_pred HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
+..|.-+++.|++|+|||...+-.+.+....+ ..+++++-- +-..|+...+..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-------------~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND-------------DVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-------------CEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-------------CeEEEEECC-CCHHHHHHHHHH
Confidence 34567799999999999975444444433322 147777643 334455555543
No 200
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.72 E-value=0.67 Score=43.95 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=30.5
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
.|.-+++.|++|+|||...+-.+.+.+..... .+++++-. +-..++.+.+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~------------~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE------------PGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCC------------CEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC------------Cceeeccc-CCHHHHHHHHHH
Confidence 35679999999999997544444443332111 26666532 334555555544
No 201
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=84.70 E-value=6.7 Score=32.06 Aligned_cols=68 Identities=12% Similarity=0.050 Sum_probs=46.2
Q ss_pred cEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC-----CceeeecCh-hhHHHHHhhcc----CCCceee
Q 006272 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG-----NGAVFDVPV-ADLDLFRSGAD----NAANVSL 585 (652)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~-----~~a~~dv~~-~~a~~~~~~~~----~~~~i~l 585 (652)
..+|++..-....+..++..++..+ | .|..+.+..+. +++||++.. +.|..++..++ .++.+.+
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V 80 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKH-G-----PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV 80 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTS-S-----CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3577777655556677776666653 3 34556665543 799999988 77777777666 5667777
Q ss_pred eecc
Q 006272 586 EVLK 589 (652)
Q Consensus 586 ~~~~ 589 (652)
+.++
T Consensus 81 ~~a~ 84 (116)
T 2fy1_A 81 EQAK 84 (116)
T ss_dssp EECC
T ss_pred EECC
Confidence 7775
No 202
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=84.66 E-value=4.1 Score=39.93 Aligned_cols=70 Identities=14% Similarity=0.252 Sum_probs=54.1
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCceE
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~ 264 (652)
++||.|+|+.-+..+++.+.. .++.+..++|+.+...+...+ ....+|+|+|. +....+++.++++
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------va~~Gidi~~v~~ 99 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------VAARGLDIPQVDL 99 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS------TTTCSTTCCCCSE
T ss_pred CEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec------hhhcCccccceeE
Confidence 499999999999988888765 468899999998877666544 34689999993 2334677889998
Q ss_pred EecC
Q 006272 265 RVLD 268 (652)
Q Consensus 265 lViD 268 (652)
||.=
T Consensus 100 VI~~ 103 (300)
T 3i32_A 100 VVHY 103 (300)
T ss_dssp EEES
T ss_pred EEEc
Confidence 8853
No 203
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.15 E-value=2.7 Score=34.32 Aligned_cols=70 Identities=6% Similarity=-0.007 Sum_probs=45.7
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC------CceeeecCh-hhHHHHHhhcc---CCCce
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPV-ADLDLFRSGAD---NAANV 583 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~------~~a~~dv~~-~~a~~~~~~~~---~~~~i 583 (652)
....+|+|..-....+..++..++..+ + .|..+.+..+. .++||++.. +.|..++..++ .++.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 88 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGF-G-----DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA 88 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTT-S-----CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-C-----CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEE
Confidence 345688887666556677777777653 3 34445555442 589999988 67777776665 45566
Q ss_pred eeeecc
Q 006272 584 SLEVLK 589 (652)
Q Consensus 584 ~l~~~~ 589 (652)
.++.+.
T Consensus 89 ~V~~a~ 94 (116)
T 2cqd_A 89 NVNLAY 94 (116)
T ss_dssp EEEEST
T ss_pred EEEEcc
Confidence 666664
No 204
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.13 E-value=4.5 Score=41.79 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchhhh
Q 006272 146 GSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~ 163 (652)
-+-+|+.||+|||||+.+
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 366999999999999853
No 205
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=82.87 E-value=4.8 Score=41.24 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=54.8
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCc
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~ 262 (652)
..++||.|+++..+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+ ...+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HH-HTTSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-hcCCCcccC
Confidence 346999999999999999988774 57888999998866554443 34689999994 33 346788899
Q ss_pred eEEec
Q 006272 263 KFRVL 267 (652)
Q Consensus 263 ~~lVi 267 (652)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98885
No 206
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=82.85 E-value=1.3 Score=51.95 Aligned_cols=79 Identities=11% Similarity=0.161 Sum_probs=62.4
Q ss_pred HHHhhCCCCeEEEEecchhHHHHHHHhcC-------CCcccccccchHHHHHHHhhhcCCCceEEEEcccc-----ccCC
Q 006272 356 IIRCYSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA-----ARGL 423 (652)
Q Consensus 356 ll~~~~~~~~~iVF~~s~~~~~~l~~~l~-------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~-----~~Gl 423 (652)
++.....+.++||.++|+.-|.+++..+. .+..+||+++..+|...+..+..+..+|||+|.-. .. +
T Consensus 114 il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l 192 (1104)
T 4ddu_A 114 ALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-L 192 (1104)
T ss_dssp HHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-H
T ss_pred HHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-h
Confidence 34444567899999999999999888775 45678999999999999999999999999999522 22 5
Q ss_pred CCCCccEEEEcC
Q 006272 424 DINDVQLIIQCE 435 (652)
Q Consensus 424 di~~v~~VI~~~ 435 (652)
++.++++||.=.
T Consensus 193 ~~~~l~~lViDE 204 (1104)
T 4ddu_A 193 SQKRFDFVFVDD 204 (1104)
T ss_dssp HTSCCSEEEESC
T ss_pred cccCcCEEEEeC
Confidence 567888888633
No 207
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=82.75 E-value=4.5 Score=32.57 Aligned_cols=68 Identities=16% Similarity=0.020 Sum_probs=45.2
Q ss_pred cEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CC-----Cceee
Q 006272 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NA-----ANVSL 585 (652)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~-----~~i~l 585 (652)
..+|++..-....+..++..++..+ + .|..+.+..+ .++||++.. +.|..++..++ .+ +.+.+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREA-G-----DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGG-S-----CEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4577777655556666776655542 2 4555666666 799999988 77888887776 44 55666
Q ss_pred eeccC
Q 006272 586 EVLKQ 590 (652)
Q Consensus 586 ~~~~~ 590 (652)
+.+..
T Consensus 88 ~~a~~ 92 (108)
T 1x4c_A 88 KVDGP 92 (108)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 66653
No 208
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=82.73 E-value=28 Score=34.32 Aligned_cols=42 Identities=17% Similarity=0.308 Sum_probs=25.4
Q ss_pred cHHHHHHHHhCCcCCCCceEEecCcchhhhh---cCcHHHHHHHHHhc
Q 006272 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLR---MGFVEDVELILGKV 289 (652)
Q Consensus 245 p~rl~~~l~~~~~~l~~~~~lViDEah~~l~---~gf~~~~~~i~~~~ 289 (652)
...++..+....- .--+|||||+|.+.+ ..+...+..+....
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~ 168 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL 168 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC
Confidence 3455555543211 244899999999864 34666666666553
No 209
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=82.25 E-value=1.3 Score=44.84 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=18.9
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILES 170 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~ 170 (652)
.|.-+++.+++|+|||...+-.+.+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 45778999999999997544434333
No 210
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=81.78 E-value=1.8 Score=44.61 Aligned_cols=77 Identities=12% Similarity=0.157 Sum_probs=59.4
Q ss_pred HHhhCCCCeEEEEecchhHHHHHHHhcC-------CCcccccccchHHHHHHHhhhcCCCceEEEEccccc----cCCCC
Q 006272 357 IRCYSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA----RGLDI 425 (652)
Q Consensus 357 l~~~~~~~~~iVF~~s~~~~~~l~~~l~-------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~----~Gldi 425 (652)
+.....+.++||.++++.-+.+++..+. .+..+||+.+..++...+..+..+..+|+|+|.-.- .-++.
T Consensus 58 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 58 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred HHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 3444567899999999999888776654 567899999999988888999999999999995321 11455
Q ss_pred CCccEEEE
Q 006272 426 NDVQLIIQ 433 (652)
Q Consensus 426 ~~v~~VI~ 433 (652)
.++++||.
T Consensus 138 ~~~~~iVi 145 (414)
T 3oiy_A 138 KRFDFVFV 145 (414)
T ss_dssp CCCSEEEE
T ss_pred ccccEEEE
Confidence 67788775
No 211
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=81.29 E-value=7.6 Score=38.10 Aligned_cols=19 Identities=21% Similarity=0.097 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
++-+++.+++|+|||+...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 4558899999999997544
No 212
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.26 E-value=1.6 Score=53.71 Aligned_cols=28 Identities=18% Similarity=0.065 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHhC
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESLTN 173 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l~~ 173 (652)
++.+++.+|+|+|||......+.+...+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~ 1454 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQRE 1454 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 6899999999999998765555555543
No 213
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=80.68 E-value=10 Score=36.97 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCchhhhH
Q 006272 145 DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~ 164 (652)
.++-+.+.+++|+|||+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45667788999999997543
No 214
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=80.67 E-value=1.6 Score=49.25 Aligned_cols=17 Identities=29% Similarity=0.186 Sum_probs=14.7
Q ss_pred cEEEEccCCCCchhhhH
Q 006272 148 DLVGRARTGQGKTLAFV 164 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~ 164 (652)
.+++.+|||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998544
No 215
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.48 E-value=5.3 Score=32.14 Aligned_cols=73 Identities=10% Similarity=-0.015 Sum_probs=50.2
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeecc
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVLK 589 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~~ 589 (652)
...+|++..-....+..++..++..+ | .|..+.+..+.+++||++.. +.|..++..++ .++.+.+..++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPF-G-----QIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHH-S-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 45688887655556677776666653 2 45567777778899999988 67777776665 56667777776
Q ss_pred CCCc
Q 006272 590 QLPP 593 (652)
Q Consensus 590 ~lp~ 593 (652)
..+.
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 5443
No 216
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=80.45 E-value=10 Score=40.82 Aligned_cols=75 Identities=9% Similarity=0.057 Sum_probs=57.1
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCce
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~ 263 (652)
.++||.|+|+.-+..+++.+..... .++.+..++|+.+.......+ ....+|+|||. +....+++.+++
T Consensus 340 ~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~GiDip~v~ 412 (563)
T 3i5x_A 340 YKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFPNVH 412 (563)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCTTCC
T ss_pred CcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc------hhhcCCCcccCC
Confidence 3699999999999999999987642 367888999998876655444 35689999994 333467888898
Q ss_pred EEecCc
Q 006272 264 FRVLDE 269 (652)
Q Consensus 264 ~lViDE 269 (652)
+||.-.
T Consensus 413 ~VI~~~ 418 (563)
T 3i5x_A 413 EVLQIG 418 (563)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 887543
No 217
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=80.28 E-value=1.7 Score=45.49 Aligned_cols=30 Identities=20% Similarity=0.029 Sum_probs=21.3
Q ss_pred hcCCcEEEEccCCCCchhhhHHHHHHHHhC
Q 006272 144 LDGSDLVGRARTGQGKTLAFVLPILESLTN 173 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~~~lpil~~l~~ 173 (652)
..|.-+++.|++|+|||...+-.+.+....
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~ 224 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN 224 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc
Confidence 355679999999999998655545544443
No 218
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.82 E-value=2.8 Score=33.60 Aligned_cols=74 Identities=7% Similarity=0.008 Sum_probs=47.7
Q ss_pred cEEEEEecCCC-ccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc------CCCceeeee
Q 006272 516 HVTVVLEAGKP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD------NAANVSLEV 587 (652)
Q Consensus 516 ~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~------~~~~i~l~~ 587 (652)
..+|++..-.. ..+..++..++.. + ..|..+.+..++.++||++.. +.|..++..++ .++.+.+..
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~-f-----G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEP-F-----GVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGG-G-----SCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHh-c-----CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 45677765544 4445555333332 2 256667777777899999987 67777776543 577788888
Q ss_pred ccCCCcch
Q 006272 588 LKQLPPLQ 595 (652)
Q Consensus 588 ~~~lp~~~ 595 (652)
+...+.+.
T Consensus 89 a~~~~~~~ 96 (102)
T 1x4d_A 89 SQKYKRIK 96 (102)
T ss_dssp ECCCTTSS
T ss_pred CCCCCCCC
Confidence 87655544
No 219
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=79.48 E-value=5.9 Score=40.41 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=54.8
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCce
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~ 263 (652)
.++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ ....+|+|+|. +....+++.+++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~ 336 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQVS 336 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCCC
Confidence 47999999999999999998875 56788899998876655444 34688999994 334567889999
Q ss_pred EEec
Q 006272 264 FRVL 267 (652)
Q Consensus 264 ~lVi 267 (652)
+||.
T Consensus 337 ~Vi~ 340 (412)
T 3fht_A 337 VVIN 340 (412)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9884
No 220
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=79.31 E-value=6.7 Score=42.48 Aligned_cols=75 Identities=9% Similarity=0.057 Sum_probs=56.7
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCce
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~ 263 (652)
.++||.|+|+.-+..+++.+..... .++.+..++|+.+.......+ ....+|+|||. +....+++.+++
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~------~~~~GiDip~v~ 361 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFPNVH 361 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCTTCC
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc------hhhcCCCcccCC
Confidence 4699999999999999999987642 367888999998876654443 35689999994 233467888888
Q ss_pred EEecCc
Q 006272 264 FRVLDE 269 (652)
Q Consensus 264 ~lViDE 269 (652)
+||.-.
T Consensus 362 ~VI~~~ 367 (579)
T 3sqw_A 362 EVLQIG 367 (579)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 887533
No 221
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=79.08 E-value=1.1 Score=46.83 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=31.3
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~ 201 (652)
...++++.|+||||||..+ .+++..+... +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~------------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR------------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT------------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC------------CCcEEEEeCCCchhH
Confidence 4679999999999999974 3344333321 225899999988864
No 222
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.02 E-value=5.6 Score=31.11 Aligned_cols=74 Identities=11% Similarity=0.020 Sum_probs=47.4
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC---CCceeeecCh-hhHHHHHhhcc----CCCceeee
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD---GNGAVFDVPV-ADLDLFRSGAD----NAANVSLE 586 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d---~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~ 586 (652)
+..++++..-....+..++..+|...+... ..|..+.+..+ ..++||++.. +.|..++..++ .++.+.++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~--G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARH--GKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhcccc--CcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 456888876665566777763333433221 24555666544 5789999987 77777777666 66677777
Q ss_pred eccC
Q 006272 587 VLKQ 590 (652)
Q Consensus 587 ~~~~ 590 (652)
.++.
T Consensus 86 ~a~~ 89 (96)
T 2dgx_A 86 LATG 89 (96)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 7653
No 223
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=78.83 E-value=6.5 Score=40.77 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=54.0
Q ss_pred EEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCceEE
Q 006272 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (652)
Q Consensus 190 ~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~l 265 (652)
+||.|+|+.-|..+++.+... ++.+..++|+.+.......+ ....+|+|||. +....+++.++++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCEE
Confidence 899999999999999988774 57889999998876655444 24689999995 33456788999998
Q ss_pred ec
Q 006272 266 VL 267 (652)
Q Consensus 266 Vi 267 (652)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 224
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.52 E-value=10 Score=29.63 Aligned_cols=71 Identities=4% Similarity=-0.117 Sum_probs=47.0
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC------CceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~------~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
...+|++..-....+..++..++..+ | .|..+.+..+. .++||++.. +.|..++..++ .++.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAY-G-----PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 80 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTT-S-----CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 44678887665556677776666653 3 34445554433 689999988 67777776666 66777
Q ss_pred eeeeccCC
Q 006272 584 SLEVLKQL 591 (652)
Q Consensus 584 ~l~~~~~l 591 (652)
.+..+...
T Consensus 81 ~V~~a~~~ 88 (99)
T 1whw_A 81 HVLPSTIK 88 (99)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 77777544
No 225
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.36 E-value=9.3 Score=29.27 Aligned_cols=70 Identities=10% Similarity=0.031 Sum_probs=46.6
Q ss_pred CCCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeee
Q 006272 513 LEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEV 587 (652)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~ 587 (652)
.+...+|++..-....+..++..++..+ | .|..+.+.. .++||++.. +.|..++..++ .++.+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~~~~--g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQY-G-----KVLECDIIK--NYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTS-S-----CEEEEEEET--TEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC-C-----CEEEEEEEC--CEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3456788887665556677776666653 3 344566654 799999988 67777776655 566676666
Q ss_pred ccC
Q 006272 588 LKQ 590 (652)
Q Consensus 588 ~~~ 590 (652)
+..
T Consensus 77 a~~ 79 (90)
T 2dnq_A 77 SKN 79 (90)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 226
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=78.19 E-value=6 Score=42.97 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=54.5
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCce
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~ 263 (652)
..+||.|+|+.-+.++++.|... ++.+..++++.+.......+ ....+|+|+|. .....+++.+++
T Consensus 268 ~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~------a~~~GID~p~V~ 337 (591)
T 2v1x_A 268 QSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV------AFGMGIDKPDVR 337 (591)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT------TSCTTCCCSCEE
T ss_pred CCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhcCCCccccc
Confidence 46999999999999999999874 57889999998866554433 35689999993 223457888999
Q ss_pred EEec
Q 006272 264 FRVL 267 (652)
Q Consensus 264 ~lVi 267 (652)
+||.
T Consensus 338 ~VI~ 341 (591)
T 2v1x_A 338 FVIH 341 (591)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9884
No 227
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=77.98 E-value=7.6 Score=39.23 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=57.4
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCce
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~ 263 (652)
.++||.|+++.-+..+++.++.. ++.+..++|+.+...+...+ ....+|+|+|. +....+++.+++
T Consensus 244 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~ 313 (395)
T 3pey_A 244 GSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTVS 313 (395)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccCC
Confidence 47999999999999999988874 56788899988866555443 34678999994 334567899999
Q ss_pred EEecCcchh
Q 006272 264 FRVLDEADE 272 (652)
Q Consensus 264 ~lViDEah~ 272 (652)
+||.-....
T Consensus 314 ~Vi~~~~p~ 322 (395)
T 3pey_A 314 MVVNYDLPT 322 (395)
T ss_dssp EEEESSCCB
T ss_pred EEEEcCCCC
Confidence 998755543
No 228
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=77.90 E-value=3.4 Score=43.11 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=46.1
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEe
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lV 266 (652)
.++||+||+++-+..+++.++.. ++.+..++|.........-.....+|+|||. .+ ...+++. +++||
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~-e~GiDip-v~~VI 245 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IA-EMGANLC-VERVL 245 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----ST-TCCTTCC-CSEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hh-heeeccC-ceEEE
Confidence 46999999999999999998875 5788888885433322222235689999994 22 3356677 88876
No 229
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.44 E-value=5 Score=31.25 Aligned_cols=69 Identities=7% Similarity=0.091 Sum_probs=44.5
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccE-EeecC------CCceeeecCh-hhHHHHHhhcc----CCCc
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGM-ALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAAN 582 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i-~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~ 582 (652)
+..+|++..-....+..++..++..+ | .|..+ .+..+ ..++||++.. +.|..++..++ .++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAF-G-----VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT-S-----CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34577777655556677776666663 3 23334 44443 3699999988 77777777666 5566
Q ss_pred eeeeecc
Q 006272 583 VSLEVLK 589 (652)
Q Consensus 583 i~l~~~~ 589 (652)
+.+..+.
T Consensus 78 l~v~~a~ 84 (96)
T 1x5t_A 78 ITVSYAF 84 (96)
T ss_dssp CEEEESC
T ss_pred EEEEEec
Confidence 6666664
No 230
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=77.15 E-value=7.3 Score=39.41 Aligned_cols=73 Identities=7% Similarity=0.120 Sum_probs=55.4
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCce
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~ 263 (652)
.++||.|+++..+..+++.+... ++.+..++|+.+.......+ .....|+|+|. .....+++.+++
T Consensus 251 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gidi~~~~ 320 (391)
T 1xti_A 251 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIERVN 320 (391)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC------CCSSCBCCTTEE
T ss_pred CcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC------hhhcCCCcccCC
Confidence 46999999999999999988774 57788899988766554433 24678999993 223467888899
Q ss_pred EEecCcc
Q 006272 264 FRVLDEA 270 (652)
Q Consensus 264 ~lViDEa 270 (652)
+||.-..
T Consensus 321 ~Vi~~~~ 327 (391)
T 1xti_A 321 IAFNYDM 327 (391)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 9987554
No 231
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=77.00 E-value=6.9 Score=30.56 Aligned_cols=70 Identities=6% Similarity=-0.030 Sum_probs=46.3
Q ss_pred CCcEEEEEecCCC-ccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeee
Q 006272 514 EDHVTVVLEAGKP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEV 587 (652)
Q Consensus 514 ~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~ 587 (652)
+...+|++..-.. ..+..++..++..+ | .|..+.+.. +++||++.. +.|..++..++ .++.+.++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~-G-----~v~~v~i~~--g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPY-G-----HIMQINIKN--AFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTT-C-----CCCEEEEET--TEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc-C-----CEEEEEEeC--CEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4566888876664 56677776666553 3 344566654 799999988 67777776655 567777777
Q ss_pred ccCC
Q 006272 588 LKQL 591 (652)
Q Consensus 588 ~~~l 591 (652)
++..
T Consensus 80 a~~~ 83 (96)
T 2kvi_A 80 SSSN 83 (96)
T ss_dssp EECC
T ss_pred cCcC
Confidence 7543
No 232
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.94 E-value=7.3 Score=30.55 Aligned_cols=70 Identities=6% Similarity=0.044 Sum_probs=47.5
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeecc
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVLK 589 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~~ 589 (652)
...+|++..-....+..++..++..+ | .|..+.+..+..++||++.. +.|..++..++ .++.+.+..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKY-G-----KAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTT-C-----CCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhc-C-----CeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 44578887655555666665555542 2 45667777788999999988 67777776655 56667777775
Q ss_pred C
Q 006272 590 Q 590 (652)
Q Consensus 590 ~ 590 (652)
.
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 233
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=76.71 E-value=4.5 Score=49.93 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=34.5
Q ss_pred HhcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHH
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~ 204 (652)
+..++.+++.+++|+|||+.....+.+.+..+. +++++. ..++..+++
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge-------------~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK-------------TCAFID-AEHALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC-------------CEEEEC-TTSCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCC-------------eEEEEE-ccccHHHHH
Confidence 336789999999999999977777777765543 366665 446666665
No 234
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=76.45 E-value=5.8 Score=45.27 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
..++++.+|+|+|||...-
T Consensus 191 ~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCCEEEECTTSCHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3579999999999997543
No 235
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=76.39 E-value=2 Score=45.64 Aligned_cols=40 Identities=18% Similarity=0.052 Sum_probs=27.1
Q ss_pred HHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEccCCCCchhh
Q 006272 121 REKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLA 162 (652)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~-~l~~~dvl~~a~TGsGKTl~ 162 (652)
...|.+.|. +++.+...+.. +..+..+++++|||||||+.
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344556663 34444455544 34788899999999999984
No 236
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.21 E-value=5.9 Score=31.89 Aligned_cols=71 Identities=7% Similarity=-0.004 Sum_probs=47.0
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc------CCCceeee
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD------NAANVSLE 586 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~------~~~~i~l~ 586 (652)
+...+|++..-....+..++..++..+ | .|..+.+..+++++||++.. +.|..++..++ .++.+.+.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~f-G-----~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPF-G-----KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHH-C-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345678877655555666776665553 3 45567777778999999987 66777776543 45566666
Q ss_pred eccC
Q 006272 587 VLKQ 590 (652)
Q Consensus 587 ~~~~ 590 (652)
.++.
T Consensus 88 ~A~~ 91 (105)
T 1sjq_A 88 FSNH 91 (105)
T ss_dssp CCSS
T ss_pred EcCC
Confidence 6653
No 237
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=76.01 E-value=7.5 Score=41.46 Aligned_cols=69 Identities=13% Similarity=0.208 Sum_probs=53.5
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCceE
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~ 264 (652)
.+||.|+|+.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .....+++.++++
T Consensus 238 ~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~------a~~~GiD~p~v~~ 307 (523)
T 1oyw_A 238 SGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV------AFGMGINKPNVRF 307 (523)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT------TSCTTTCCTTCCE
T ss_pred cEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhCCCCccCccE
Confidence 4899999999999999999874 57888999998865544333 35689999994 2234578889999
Q ss_pred Eec
Q 006272 265 RVL 267 (652)
Q Consensus 265 lVi 267 (652)
||.
T Consensus 308 VI~ 310 (523)
T 1oyw_A 308 VVH 310 (523)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 238
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=75.80 E-value=11 Score=42.18 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCCchhhhH
Q 006272 145 DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~ 164 (652)
...++++.+|+|+|||...-
T Consensus 206 ~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHH
Confidence 34679999999999998543
No 239
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=75.78 E-value=2.8 Score=41.56 Aligned_cols=25 Identities=20% Similarity=0.040 Sum_probs=18.4
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILE 169 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~ 169 (652)
.|.-+++.+++|+|||...+-.+.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999755444433
No 240
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=75.45 E-value=5.8 Score=30.74 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=44.3
Q ss_pred EEEEecCCCccCchhhHHHHHhhCChhhhhccccEEee------cCCCceeeecCh-hhHHHHHhhcc-----CCCceee
Q 006272 518 TVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALT------ADGNGAVFDVPV-ADLDLFRSGAD-----NAANVSL 585 (652)
Q Consensus 518 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~------~d~~~a~~dv~~-~~a~~~~~~~~-----~~~~i~l 585 (652)
+|++..-....+..++..++..+ |. .|..+.+. ..++++||++.. +.|..++..+. .++.+.+
T Consensus 3 ~i~v~nLp~~~te~~l~~~F~~~-G~----~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 3 IVMLRMLPQAATEDDIRGQLQSH-GV----QAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM 77 (91)
T ss_dssp EEEEETCCSSCCHHHHHHHHHHH-TC----CCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHh-CC----EeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence 45666655556777887777764 31 12233332 223689999988 77777776543 5677778
Q ss_pred eeccCCCc
Q 006272 586 EVLKQLPP 593 (652)
Q Consensus 586 ~~~~~lp~ 593 (652)
+.+.+.|.
T Consensus 78 ~~a~~~~~ 85 (91)
T 2lxi_A 78 HYSDPKPK 85 (91)
T ss_dssp ECCCSCCC
T ss_pred EEcCCCCC
Confidence 77765543
No 241
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=75.42 E-value=8.7 Score=39.18 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=54.1
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCceE
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~ 264 (652)
++||.|+++.-+..+++.+... ++.+..++|+.+.......+ .....|+|+|. +....+++.++++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQVSL 347 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTEEE
T ss_pred cEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccCCE
Confidence 6999999999999999988774 56788899998866554433 34688999994 3334678899999
Q ss_pred EecC
Q 006272 265 RVLD 268 (652)
Q Consensus 265 lViD 268 (652)
||.-
T Consensus 348 Vi~~ 351 (410)
T 2j0s_A 348 IINY 351 (410)
T ss_dssp EEES
T ss_pred EEEE
Confidence 8853
No 242
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=75.39 E-value=14 Score=28.94 Aligned_cols=68 Identities=10% Similarity=0.005 Sum_probs=44.7
Q ss_pred EEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC-CCceeeecCh-hhHHHHHhhcc----CCCceeeeeccCC
Q 006272 518 TVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-GNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVLKQL 591 (652)
Q Consensus 518 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d-~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~~~l 591 (652)
++++..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|..++..++ .++.+.+..+...
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYY-G-----PLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHH-C-----CCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 56665544445666776666653 2 4555666554 6899999988 66777666554 6677777777644
No 243
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=74.97 E-value=6.8 Score=39.08 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=53.5
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCce
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~ 263 (652)
.++||.|+++.-+..+++.++.. ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++.+++
T Consensus 239 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~~~ 308 (367)
T 1hv8_A 239 FYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVNDLN 308 (367)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCSCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCcccCC
Confidence 35899999999999999988874 57788899988766554433 34678999993 222 246788888
Q ss_pred EEecCc
Q 006272 264 FRVLDE 269 (652)
Q Consensus 264 ~lViDE 269 (652)
+||.-.
T Consensus 309 ~Vi~~~ 314 (367)
T 1hv8_A 309 CVINYH 314 (367)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 888643
No 244
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=74.96 E-value=6 Score=39.74 Aligned_cols=22 Identities=18% Similarity=-0.093 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCCchhhhHHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lp 166 (652)
.|.-+.+.+|+|||||......
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l 151 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTL 151 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3456889999999999854443
No 245
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.83 E-value=5.9 Score=31.36 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=46.6
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCc
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAAN 582 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~ 582 (652)
....+|+|..-....+..++..++..+ | .|..+.+..+ ..++||++.. +.|..++..++ .++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKY-G-----RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT-S-----CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 345688887766556677776666653 2 3444555433 3689999988 67777777665 5667
Q ss_pred eeeeeccC
Q 006272 583 VSLEVLKQ 590 (652)
Q Consensus 583 i~l~~~~~ 590 (652)
+.+..++.
T Consensus 85 l~V~~a~~ 92 (103)
T 2dnm_A 85 LRVQVARY 92 (103)
T ss_dssp CEEEECSS
T ss_pred EEEEECCc
Confidence 77777753
No 246
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.76 E-value=9.4 Score=30.33 Aligned_cols=73 Identities=10% Similarity=-0.024 Sum_probs=48.4
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC-------CCceeeecCh-hhHHHHHhhc-c----CC
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-------GNGAVFDVPV-ADLDLFRSGA-D----NA 580 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d-------~~~a~~dv~~-~~a~~~~~~~-~----~~ 580 (652)
....+|+|..-....+..++..++..+ | .|..+.+..+ ..++||++.. +.|..++..+ + .+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTF-G-----ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTT-S-----CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHcc-C-----CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 345677777655556677776666653 3 3445666554 4799999988 7777777766 4 66
Q ss_pred CceeeeeccCCC
Q 006272 581 ANVSLEVLKQLP 592 (652)
Q Consensus 581 ~~i~l~~~~~lp 592 (652)
+.+.+..+...+
T Consensus 87 ~~l~v~~a~~~~ 98 (107)
T 2cph_A 87 RRLVLEWADSEV 98 (107)
T ss_dssp CBCEEEECCCCC
T ss_pred CEEEEEeCCCCC
Confidence 777777776443
No 247
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=74.54 E-value=3.2 Score=38.21 Aligned_cols=32 Identities=22% Similarity=0.121 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHhcCCcEEEEccCCCCchhhh
Q 006272 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 132 ~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~ 163 (652)
-+.-|..++..+..|.-+.+.+|.|||||+.+
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34456778888888999999999999999854
No 248
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=74.26 E-value=10 Score=38.54 Aligned_cols=71 Identities=4% Similarity=0.094 Sum_probs=54.2
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCce
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~ 263 (652)
.++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ .....|+|+|. +....+++.+++
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~~ 328 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAVN 328 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTEE
T ss_pred CcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCCC
Confidence 36999999999999999998875 46788899988766554433 34678999993 223457888899
Q ss_pred EEecC
Q 006272 264 FRVLD 268 (652)
Q Consensus 264 ~lViD 268 (652)
+||.-
T Consensus 329 ~Vi~~ 333 (400)
T 1s2m_A 329 VVINF 333 (400)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88853
No 249
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=74.14 E-value=1.2 Score=45.02 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCCchhhhH
Q 006272 145 DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~ 164 (652)
.|.-+++.+|+|+|||+..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal 79 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLAL 79 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678999999999997443
No 250
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=74.01 E-value=7.7 Score=40.73 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.2
Q ss_pred cEEEEccCCCCchhhhH
Q 006272 148 DLVGRARTGQGKTLAFV 164 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~ 164 (652)
-+.+.+++|+|||+...
T Consensus 295 VI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIG 311 (503)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCcccHHHHHH
Confidence 47899999999998543
No 251
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=73.82 E-value=11 Score=37.51 Aligned_cols=53 Identities=9% Similarity=0.129 Sum_probs=33.4
Q ss_pred ceEEecCcchhhh-hcCcHHHHHHHHHhccCCCCceEEEEcccCChHHHHHHHHhc
Q 006272 262 LKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (652)
Q Consensus 262 ~~~lViDEah~~l-~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (652)
.+++++|.+-++- +......+..+...+.. ...++++.+|....+...+..+.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~--de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKP--NLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCC--SEEEEEEEGGGTTHHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcC--CCCEEEEecHHHHHHHHHHHHHH
Confidence 4567788776542 23345566666555543 55778888888777766666654
No 252
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=73.73 E-value=16 Score=29.47 Aligned_cols=74 Identities=12% Similarity=0.070 Sum_probs=49.1
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC------CceeeecCh-hhHHHHHhhcc----CCCc
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPV-ADLDLFRSGAD----NAAN 582 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~------~~a~~dv~~-~~a~~~~~~~~----~~~~ 582 (652)
....+|+|..-....+..++..++..+ | .|..+.+..+. +++||++.. +.|..++..++ .++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPF-G-----RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGG-S-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 355688888766556667776666653 2 34456655442 589999987 77777777665 5677
Q ss_pred eeeeeccCCCc
Q 006272 583 VSLEVLKQLPP 593 (652)
Q Consensus 583 i~l~~~~~lp~ 593 (652)
+.+..+...+.
T Consensus 87 l~V~~a~~~~~ 97 (115)
T 2dgo_A 87 IRTNWATRKPP 97 (115)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEEccCCCC
Confidence 77777765443
No 253
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.51 E-value=10 Score=29.54 Aligned_cols=71 Identities=7% Similarity=-0.019 Sum_probs=47.3
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----C--CCceeeee
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----N--AANVSLEV 587 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~--~~~i~l~~ 587 (652)
...+|++..-....+..++..++..+ + .|..+.+..+..++||++.. +.|..++..++ . ++.+.++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRF-G-----SIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTT-S-----CEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 34577777655556667776666653 2 45556666667899999987 67777776655 4 66777777
Q ss_pred ccCC
Q 006272 588 LKQL 591 (652)
Q Consensus 588 ~~~l 591 (652)
+...
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 254
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=73.44 E-value=3.1 Score=41.01 Aligned_cols=41 Identities=7% Similarity=-0.149 Sum_probs=26.4
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHH
Q 006272 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 199 (652)
-+++.+|+|+|||...+-.+.+..... .+..++++..-..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-----------~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-----------PDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-----------TTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-----------CCceEEEEeccchh
Confidence 588999999999986555444444321 11247888765444
No 255
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=73.34 E-value=3.9 Score=41.33 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCCchhhhH
Q 006272 145 DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~ 164 (652)
....+++.+|+|+|||+.+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999998543
No 256
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.77 E-value=12 Score=29.13 Aligned_cols=70 Identities=6% Similarity=-0.041 Sum_probs=46.2
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeec
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVL 588 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~ 588 (652)
....+|++..-....+..++..++..+ +. ..|..+.+.. .++||++.. +.|..++..++ .++.+.+..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g~---g~v~~~~~~~--g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNI-KP---GAVERVKKIR--DYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTT-ST---TCEEEEEECS--SEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhc-CC---cceEEEEEeC--CeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 345688887666556677777777664 21 2444555555 699999988 67777777666 5566666666
Q ss_pred c
Q 006272 589 K 589 (652)
Q Consensus 589 ~ 589 (652)
+
T Consensus 87 ~ 87 (99)
T 2cpd_A 87 K 87 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 257
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=72.46 E-value=6.1 Score=37.81 Aligned_cols=44 Identities=18% Similarity=0.042 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCCCChHHHH-HHHHHHhcCC-----cEEEEccCCCCchhhhH
Q 006272 118 VPLREKLKSKGIESLFPIQA-MTFDMVLDGS-----DLVGRARTGQGKTLAFV 164 (652)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~-~~i~~~l~~~-----dvl~~a~TGsGKTl~~~ 164 (652)
..+.+.|+-.||. |++- .++..+++++ .+++.+|+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3678888888876 4453 3355566553 49999999999998655
No 258
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=72.09 E-value=6.4 Score=43.40 Aligned_cols=68 Identities=13% Similarity=0.056 Sum_probs=47.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh-cCCCcEEEeCcHHHHHHHHhCCcCCCCceEE
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL-KKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~-~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~l 265 (652)
..++||+||+++-+..+++.|... ++.+..++|..... ....+ ....+|+|+|. .+. ..+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~-v~~~F~~g~~~VLVaTd-----v~e-~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDT-EYPKCKNGDWDFVITTD-----ISE-MGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHH-HGGGGGTCCCSEEEECG-----GGG-TTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHH-HHHHHHCCCceEEEECc-----hhh-cceeeC-CcEE
Confidence 346999999999999999888764 67888888853222 22222 34689999993 333 346677 7776
Q ss_pred e
Q 006272 266 V 266 (652)
Q Consensus 266 V 266 (652)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 259
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=71.57 E-value=17 Score=38.46 Aligned_cols=20 Identities=20% Similarity=0.069 Sum_probs=15.6
Q ss_pred cEEEEccCCCCchhhhHHHH
Q 006272 148 DLVGRARTGQGKTLAFVLPI 167 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpi 167 (652)
.+++++++|+|||+.+.-.+
T Consensus 103 vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58889999999998654433
No 260
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.05 E-value=9.7 Score=29.96 Aligned_cols=70 Identities=6% Similarity=-0.001 Sum_probs=46.5
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
...+|++..-....+..++..++..+ + .|..+.+..+ ..++||++.. +.|..++..++ .++.+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKY-G-----QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHH-S-----CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc-C-----CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34578887665556677777777663 2 3445555443 2599999988 67777776665 66777
Q ss_pred eeeeccC
Q 006272 584 SLEVLKQ 590 (652)
Q Consensus 584 ~l~~~~~ 590 (652)
.++.+..
T Consensus 85 ~v~~a~~ 91 (102)
T 1x5s_A 85 RVDQAGK 91 (102)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
Confidence 7777753
No 261
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=73.61 E-value=0.86 Score=40.54 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=49.4
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhc----CCCcEEEeCcHHHHHHHHhCCcCCCCceE
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK----KGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~----~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~ 264 (652)
++||.|+++..+..+++.|... ++.+..++|+.+.......+. ...+|+|+|. .+ ...+++.++++
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~~~ 101 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VA-ARGIDIPDVSH 101 (170)
Confidence 5899999999999988888764 567788888876655443332 3578999992 22 23456777777
Q ss_pred EecCc
Q 006272 265 RVLDE 269 (652)
Q Consensus 265 lViDE 269 (652)
||.-.
T Consensus 102 Vi~~~ 106 (170)
T 2yjt_D 102 VFNFD 106 (170)
Confidence 77533
No 262
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.68 E-value=8.5 Score=29.79 Aligned_cols=68 Identities=7% Similarity=0.013 Sum_probs=43.6
Q ss_pred cEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCcee
Q 006272 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANVS 584 (652)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i~ 584 (652)
-.+|++..-....+..++..++..+ + .|..+.+..+ ..++||++.. +.|..++..++ .++.+.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~-G-----~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPF-G-----KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 78 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT-S-----CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc-C-----CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 4577777655555666676666553 2 3445555544 2589999988 67777776555 666777
Q ss_pred eeecc
Q 006272 585 LEVLK 589 (652)
Q Consensus 585 l~~~~ 589 (652)
++.+.
T Consensus 79 V~~a~ 83 (95)
T 2dnz_A 79 VGHVT 83 (95)
T ss_dssp EEESS
T ss_pred EEEcc
Confidence 77764
No 263
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.15 E-value=14 Score=30.09 Aligned_cols=75 Identities=12% Similarity=0.054 Sum_probs=48.2
Q ss_pred CCCcEEEEEecCCCc-cCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc------CCCcee
Q 006272 513 LEDHVTVVLEAGKPI-YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD------NAANVS 584 (652)
Q Consensus 513 ~~~~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~------~~~~i~ 584 (652)
.....+|++..-..- .+..++..++.. +| .|..+.+...++++||++.. +.|..++..++ .++.+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~-fG-----~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEP-YG-----KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTT-TS-----CCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHh-cC-----CEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 344567887765543 555555433333 23 45667777778999999987 67777776542 667788
Q ss_pred eeeccCCCc
Q 006272 585 LEVLKQLPP 593 (652)
Q Consensus 585 l~~~~~lp~ 593 (652)
++.+.....
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 888865433
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=70.03 E-value=2.7 Score=41.18 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=17.3
Q ss_pred cCCcEEEEccCCCCchhhhHHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lp 166 (652)
.++-+++.+++|+|||+.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~L 125 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKL 125 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999865443
No 265
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.91 E-value=18 Score=27.65 Aligned_cols=68 Identities=10% Similarity=0.054 Sum_probs=46.3
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeec
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVL 588 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~ 588 (652)
....+|++..-....+..++..++..+ | .|..+.+.. .++||++.. +.|..++..++ .++.+.++.+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~v~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEY-G-----PVIECDIVK--DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTT-S-----CCCEEEECS--SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 345688887665556677776666653 3 455566665 589999987 67777776665 5666777766
Q ss_pred c
Q 006272 589 K 589 (652)
Q Consensus 589 ~ 589 (652)
.
T Consensus 80 ~ 80 (92)
T 2dgt_A 80 T 80 (92)
T ss_dssp S
T ss_pred c
Confidence 4
No 266
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=69.75 E-value=6.2 Score=40.92 Aligned_cols=67 Identities=10% Similarity=-0.052 Sum_probs=46.3
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEE
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~l 265 (652)
.++||+||+++-+..+++.+... ++.+..++|+........-.....+|+|||. .+. ..+++. +.+|
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~-----v~e-~GiDip-~~~V 238 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD-----ISE-MGANFK-ADRV 238 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG-----GGG-TSCCCC-CSEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc-----hHH-cCcccC-CcEE
Confidence 36999999999999999998875 5788888887433222222245689999994 333 345565 4454
No 267
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=69.58 E-value=3.2 Score=42.84 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=19.8
Q ss_pred HHHHHHHHHh--cCCcEEEEccCCCCchhh
Q 006272 135 IQAMTFDMVL--DGSDLVGRARTGQGKTLA 162 (652)
Q Consensus 135 ~Q~~~i~~~l--~~~dvl~~a~TGsGKTl~ 162 (652)
-+..++..++ .+.-+++.+|||||||+.
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3455555444 344589999999999984
No 268
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=69.38 E-value=2 Score=41.32 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.5
Q ss_pred HhcCCcEEEEccCCCCchhhh
Q 006272 143 VLDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~ 163 (652)
+..|.-+++.+|||||||+..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 446778999999999999853
No 269
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=68.76 E-value=5.5 Score=42.16 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhcCCcEEEEccCCCCchhhh
Q 006272 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 133 ~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~ 163 (652)
..+-..++..+..+.++++.+|+|+|||...
T Consensus 28 ~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 28 SHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3344455566778899999999999999743
No 270
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=68.66 E-value=11 Score=42.22 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=55.5
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHh-------cCCCceEEEEeCCcchHHHHHHhcC---------CCcEEEeCcHHHHHH
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYG-------GAVGLTSCCLYGGAPYHAQEFKLKK---------GIDVVIGTPGRIKDH 251 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~-------~~~~~~~~~~~gg~~~~~~~~~~~~---------~~~Ilv~Tp~rl~~~ 251 (652)
..+||.+|++.-+.++++.+.... ...++.+..++|+.+...+...+.. ...|||||. .
T Consensus 304 g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-----i 378 (773)
T 2xau_A 304 GDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-----I 378 (773)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----H
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----H
Confidence 479999999999999998887522 2357889999999988777655532 357999994 2
Q ss_pred HHhCCcCCCCceEEec
Q 006272 252 IERGNIDLSSLKFRVL 267 (652)
Q Consensus 252 l~~~~~~l~~~~~lVi 267 (652)
+. ..+++.++++||-
T Consensus 379 ae-~GidIp~v~~VId 393 (773)
T 2xau_A 379 AE-TSLTIDGIVYVVD 393 (773)
T ss_dssp HH-HTCCCTTEEEEEE
T ss_pred HH-hCcCcCCeEEEEe
Confidence 33 3567888888774
No 271
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=68.54 E-value=2.6 Score=42.60 Aligned_cols=20 Identities=35% Similarity=0.272 Sum_probs=17.5
Q ss_pred HhcCCcEEEEccCCCCchhh
Q 006272 143 VLDGSDLVGRARTGQGKTLA 162 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~ 162 (652)
+..|..+++++|||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44788999999999999984
No 272
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=68.49 E-value=3.3 Score=39.58 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=16.9
Q ss_pred hcCCcEEEEccCCCCchhhh
Q 006272 144 LDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~~ 163 (652)
..+..+++.+++|+|||...
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 35678999999999999743
No 273
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.38 E-value=17 Score=28.49 Aligned_cols=72 Identities=7% Similarity=-0.009 Sum_probs=47.0
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC----CCceeeecCh-hhHHHHHhhcc----CCCcee
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD----GNGAVFDVPV-ADLDLFRSGAD----NAANVS 584 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d----~~~a~~dv~~-~~a~~~~~~~~----~~~~i~ 584 (652)
....+|++..-....+..++..++..+ | .|..+.+..+ ..++||++.. +.|..++..++ .++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-G-----~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQF-G-----KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGT-S-----CEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 345688887665556666776666553 2 3445666544 4699999988 67777776655 666777
Q ss_pred eeeccCC
Q 006272 585 LEVLKQL 591 (652)
Q Consensus 585 l~~~~~l 591 (652)
+..+...
T Consensus 87 v~~a~~~ 93 (103)
T 2cq3_A 87 VNNATAR 93 (103)
T ss_dssp EEECCSS
T ss_pred EEEcccC
Confidence 7777543
No 274
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=68.37 E-value=43 Score=34.34 Aligned_cols=21 Identities=24% Similarity=0.098 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCchhhhHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVL 165 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~l 165 (652)
.++-+++.+++|+|||+....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345677889999999986543
No 275
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=68.32 E-value=4.1 Score=48.41 Aligned_cols=38 Identities=26% Similarity=0.468 Sum_probs=27.5
Q ss_pred EEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccH
Q 006272 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (652)
Q Consensus 150 l~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 197 (652)
+|.|..|||||.+.+--+...+..+. .+.++|+|+|..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~----------~~~~il~lVP~q 42 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAP----------FGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCT----------TSSCEEEECCGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCC----------CCCcEEEEecCc
Confidence 78999999999987666665555432 123589999975
No 276
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.20 E-value=16 Score=29.07 Aligned_cols=69 Identities=12% Similarity=0.116 Sum_probs=44.2
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC---CceeeecCh-hhHHHHHhhcc----CCCceeee
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG---NGAVFDVPV-ADLDLFRSGAD----NAANVSLE 586 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~---~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~ 586 (652)
...+|+|..-....+..++..++..+ + .|..+.+..+. .++||++.. +.|..++..++ .++.+.++
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKY-G-----AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGG-S-----CEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45688887665556677776666663 2 34445554433 599999987 67777776665 55556666
Q ss_pred ecc
Q 006272 587 VLK 589 (652)
Q Consensus 587 ~~~ 589 (652)
.++
T Consensus 95 ~a~ 97 (109)
T 1x4a_A 95 FPR 97 (109)
T ss_dssp CCC
T ss_pred Ecc
Confidence 554
No 277
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=68.02 E-value=7.6 Score=36.39 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=38.9
Q ss_pred CCCeEEEEecchhHHHHHHHhcC--------CCcccccccchHHHHHHHhhhcCCCceEEEEcc
Q 006272 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~--------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~ 417 (652)
.+.++||.++|+.-+.++++.+. .+..++|+.+...+...+.. ..+|+|+|.
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp 160 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 160 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECH
Confidence 35679999999999988877664 46678888887766555432 478999994
No 278
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=67.98 E-value=2.6 Score=37.68 Aligned_cols=20 Identities=20% Similarity=0.049 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCCCchhhh
Q 006272 144 LDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~~ 163 (652)
+.|+-+++++|+|||||+..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999844
No 279
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=67.84 E-value=12 Score=30.28 Aligned_cols=55 Identities=16% Similarity=-0.017 Sum_probs=36.6
Q ss_pred EEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc
Q 006272 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD 578 (652)
Q Consensus 517 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~ 578 (652)
.+|++..-....+..++..++..+ + .|..+.+..+ .++||++.. +.|..++..++
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~~-G-----~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~ 72 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMREA-G-----DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLD 72 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGGG-S-----CEEEEEECTT-SEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEecC-CEEEEEECCHHHHHHHHHHhC
Confidence 466666555455666776665542 2 4555666665 799999988 77777777666
No 280
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=67.39 E-value=11 Score=39.33 Aligned_cols=67 Identities=9% Similarity=-0.003 Sum_probs=47.0
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEe
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lV 266 (652)
++||.|||+.-+.++++.+... ++.+..+++.........-.....+|+|||. .+ ...+++.+ ++||
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~-~~GiDip~-~~VI 256 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----IS-EMGANFRA-GRVI 256 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GG-GSSCCCCC-SEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HH-HhCcCCCC-CEEE
Confidence 6999999999999999888764 5778888886653222222235689999993 33 34566777 6665
No 281
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.29 E-value=13 Score=29.42 Aligned_cols=69 Identities=10% Similarity=0.047 Sum_probs=45.7
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC------CceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~------~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
...+|++..-....+..++..++..+ + .|..+.+..+. +++||++.. +.|..++..++ .++.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQA-G-----PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTT-S-----CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 44578887665556677776766663 2 34445554432 589999988 77777777666 56667
Q ss_pred eeeecc
Q 006272 584 SLEVLK 589 (652)
Q Consensus 584 ~l~~~~ 589 (652)
.+..+.
T Consensus 88 ~v~~a~ 93 (105)
T 1x5u_A 88 RVNKAS 93 (105)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 777664
No 282
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=67.19 E-value=3.2 Score=41.73 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=21.3
Q ss_pred HHHHHHhcCCc--EEEEccCCCCchhhhH
Q 006272 138 MTFDMVLDGSD--LVGRARTGQGKTLAFV 164 (652)
Q Consensus 138 ~~i~~~l~~~d--vl~~a~TGsGKTl~~~ 164 (652)
..+..+++|.+ +++-++||||||.+..
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 35566788887 7889999999997643
No 283
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=67.14 E-value=11 Score=39.03 Aligned_cols=73 Identities=21% Similarity=0.344 Sum_probs=51.3
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeC--------CcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCC
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG--------GAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGN 256 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~g--------g~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~ 256 (652)
++||.++++..+..+++.+... ++.+..++| +.+...+...+ ....+|+|+|. . -...
T Consensus 363 k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~-~~~G 432 (494)
T 1wp9_A 363 KIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----V-GEEG 432 (494)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----G-GGGG
T ss_pred eEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----c-cccC
Confidence 5999999999999999988875 678888888 55544443333 24578999993 2 2235
Q ss_pred cCCCCceEEecCcch
Q 006272 257 IDLSSLKFRVLDEAD 271 (652)
Q Consensus 257 ~~l~~~~~lViDEah 271 (652)
+++..+++||+-+..
T Consensus 433 ldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 433 LDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGSTTCCEEEESSCC
T ss_pred CCchhCCEEEEeCCC
Confidence 778888888865544
No 284
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=66.98 E-value=58 Score=29.22 Aligned_cols=67 Identities=13% Similarity=-0.013 Sum_probs=18.9
Q ss_pred hcCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHH
Q 006272 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~ 210 (652)
+.|-.+-+.+..|-|=|+.+.+|+...-.................++|||-........+...+..+
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~ 84 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM 84 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 3456677888999999999999975432221111111112234557888888877777666666654
No 285
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=66.96 E-value=7.3 Score=45.56 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=54.2
Q ss_pred hCCCCeEEEEecchhHHHHHHHhcC------------CCcccccccchHHHHHHHhhhcCCCceEEEEcc-ccccCCC-C
Q 006272 360 YSSGGRTIIFTETKESASQLADLLP------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-VAARGLD-I 425 (652)
Q Consensus 360 ~~~~~~~iVF~~s~~~~~~l~~~l~------------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~-~~~~Gld-i 425 (652)
...+.++||.++|+.-|.++++.+. .+..+||+.+...+...++.+.+ .+|+|+|. .+..-+. +
T Consensus 96 ~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L 173 (1054)
T 1gku_B 96 ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYREL 173 (1054)
T ss_dssp HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTS
T ss_pred hhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHh
Confidence 3456799999999999988877664 35678999999988888888877 89999995 2222222 5
Q ss_pred CCccEEEE
Q 006272 426 NDVQLIIQ 433 (652)
Q Consensus 426 ~~v~~VI~ 433 (652)
.++++||.
T Consensus 174 ~~l~~lVi 181 (1054)
T 1gku_B 174 GHFDFIFV 181 (1054)
T ss_dssp CCCSEEEE
T ss_pred ccCCEEEE
Confidence 57888775
No 286
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=66.82 E-value=5.6 Score=40.61 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=29.0
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 199 (652)
.+.++++.++||||||.....-+.+.... +.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-------------~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-------------GSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-------------TCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-------------CCEEEEEeCCcCH
Confidence 56789999999999998654444433322 2347888887653
No 287
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=66.78 E-value=12 Score=35.37 Aligned_cols=68 Identities=19% Similarity=0.325 Sum_probs=44.6
Q ss_pred CCCeEEEEecchhHHHHHHHhcC--------CCcccccccchHHHHHHHhhhcCCCceEEEEcccc-----c--cCCCCC
Q 006272 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA-----A--RGLDIN 426 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~--------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~~~-----~--~Gldi~ 426 (652)
...++||.++++.-+.++++.+. .+..++|+.....+...+. ....|+|+|.-- . ..+++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 34579999999999888876654 4567788887655544432 467899999421 1 234555
Q ss_pred CccEEEE
Q 006272 427 DVQLIIQ 433 (652)
Q Consensus 427 ~v~~VI~ 433 (652)
.+++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 5555553
No 288
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=66.55 E-value=16 Score=28.95 Aligned_cols=69 Identities=6% Similarity=-0.117 Sum_probs=45.6
Q ss_pred cEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc------CCCceeeeec
Q 006272 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD------NAANVSLEVL 588 (652)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~------~~~~i~l~~~ 588 (652)
..+|++..-....+..++..++.. +| .|..+.+..+++++||++.. +.|..++..++ .++.+.++++
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~-fG-----~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQE-FG-----PISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGG-GS-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhc-cC-----CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 346777665554566667555554 33 45556676777999999987 67777766554 4677777777
Q ss_pred cC
Q 006272 589 KQ 590 (652)
Q Consensus 589 ~~ 590 (652)
+.
T Consensus 95 ~~ 96 (100)
T 3r27_A 95 TS 96 (100)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 289
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=66.39 E-value=8.9 Score=37.28 Aligned_cols=19 Identities=26% Similarity=0.195 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
...+++.+|+|+|||...-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997543
No 290
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=66.16 E-value=14 Score=29.90 Aligned_cols=71 Identities=4% Similarity=-0.023 Sum_probs=46.0
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC------CceeeecCh-hhHHHHHhhcc----CCCc
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPV-ADLDLFRSGAD----NAAN 582 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~------~~a~~dv~~-~~a~~~~~~~~----~~~~ 582 (652)
+...+|+|..-....+..++..++..+ + .|..+.+..+. .++||++.. +.|..++..++ .++.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPF-G-----NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGG-S-----CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 344678887666556677776666653 2 34445554443 489999988 67777776665 5666
Q ss_pred eeeeeccC
Q 006272 583 VSLEVLKQ 590 (652)
Q Consensus 583 i~l~~~~~ 590 (652)
+.++.+..
T Consensus 97 l~V~~a~~ 104 (115)
T 2cpz_A 97 LKVQLKRS 104 (115)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 66666653
No 291
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=65.99 E-value=6.3 Score=41.85 Aligned_cols=29 Identities=10% Similarity=-0.035 Sum_probs=20.6
Q ss_pred HhcCCcEEEEccCCCCchhhhHHHHHHHH
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLPILESL 171 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lpil~~l 171 (652)
+..|.-+++.|++|+|||...+-.+.+..
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 33566799999999999985554444443
No 292
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=65.60 E-value=3.8 Score=40.64 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=20.5
Q ss_pred HHHHHhcCCc--EEEEccCCCCchhhhH
Q 006272 139 TFDMVLDGSD--LVGRARTGQGKTLAFV 164 (652)
Q Consensus 139 ~i~~~l~~~d--vl~~a~TGsGKTl~~~ 164 (652)
.+..++.|.+ ++.-++||||||.+..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 4556678877 7889999999998653
No 293
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=65.31 E-value=7.1 Score=35.73 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=31.7
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcC----CcEEEEccCCCCchhhhHHHHHHHH
Q 006272 118 VPLREKLKSKGIESLFPIQAMTFDMVLDG----SDLVGRARTGQGKTLAFVLPILESL 171 (652)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~----~dvl~~a~TGsGKTl~~~lpil~~l 171 (652)
..+.+.|+-.|+. +..+ ..++..++.+ +.+++.+|.|+|||..+ ..++..+
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 3566667655543 4444 4455555544 35999999999999754 3344443
No 294
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=65.11 E-value=11 Score=29.63 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=47.4
Q ss_pred CCCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc-------
Q 006272 513 LEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD------- 578 (652)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~------- 578 (652)
...+-||++..-....+..++..++..+ |.. .+..+.+..| ++++||++.. +.|..++..++
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~-G~i---~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~ 81 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPY-ASL---AVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLK 81 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTT-CCC---CGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhh-CCc---cEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCce
Confidence 3456688988877767777776666653 321 2333444433 3689999988 77777776654
Q ss_pred -CCCceeeeecc
Q 006272 579 -NAANVSLEVLK 589 (652)
Q Consensus 579 -~~~~i~l~~~~ 589 (652)
+++.+.++.++
T Consensus 82 i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 82 IDGKTIGVDFAK 93 (95)
T ss_dssp ETTEEEEEEECC
T ss_pred ECCEEEEEEEcc
Confidence 45667777665
No 295
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.78 E-value=2.5 Score=43.81 Aligned_cols=54 Identities=17% Similarity=0.033 Sum_probs=32.3
Q ss_pred CCCcccccCCCHHHHHHHHHCC---CCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhh
Q 006272 107 HPNAVSRFRISVPLREKLKSKG---IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~ 163 (652)
....|++.+--+...+.|.+.= +..|--++... +..-+-+|+.+|+|+|||+.+
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHHH
Confidence 3456888887777777665431 11122222111 112378999999999999853
No 296
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=64.72 E-value=3.1 Score=41.53 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=17.3
Q ss_pred HhcCCcEEEEccCCCCchhh
Q 006272 143 VLDGSDLVGRARTGQGKTLA 162 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~ 162 (652)
+..|..+++.+|||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34788999999999999983
No 297
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.38 E-value=15 Score=29.60 Aligned_cols=74 Identities=15% Similarity=0.032 Sum_probs=44.1
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEee--cCCCceeeecCh-hhHHHHHhhcc----CCCceeeee
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALT--ADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEV 587 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~--~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~ 587 (652)
...+|++..-....+..++..++..+ |... ...-.+++. ...+++||++.. +.|..++..++ .++.+.+..
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~v~-~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARF-QEKK-GPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHH-HHSS-SSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh-CCcc-ceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34588887655556666776666553 2211 000122222 234799999988 67777777665 566777777
Q ss_pred ccC
Q 006272 588 LKQ 590 (652)
Q Consensus 588 ~~~ 590 (652)
+..
T Consensus 102 a~~ 104 (115)
T 2cpx_A 102 GKN 104 (115)
T ss_dssp CCC
T ss_pred ccC
Confidence 753
No 298
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.15 E-value=21 Score=28.42 Aligned_cols=71 Identities=6% Similarity=-0.103 Sum_probs=46.5
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc------CCCceeee
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD------NAANVSLE 586 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~------~~~~i~l~ 586 (652)
++..+|++..-.......++..++.. +| .|..+.+..+++++||++.. +.|..++..++ .++.+.+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~-fG-----~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEK-FG-----TICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTT-TS-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CC-----CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34457887765544556666555544 33 45556777677899999988 66777766442 56778888
Q ss_pred eccC
Q 006272 587 VLKQ 590 (652)
Q Consensus 587 ~~~~ 590 (652)
+++.
T Consensus 87 ~a~~ 90 (104)
T 1wex_A 87 YSTS 90 (104)
T ss_dssp ECSS
T ss_pred EccC
Confidence 7754
No 299
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.12 E-value=17 Score=29.81 Aligned_cols=72 Identities=6% Similarity=-0.037 Sum_probs=47.2
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc------CCCceeee
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD------NAANVSLE 586 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~------~~~~i~l~ 586 (652)
++..+|++..-....+..++..++.. +| .|..+.+..+++++||++.. +.|..++..++ .++.+.+.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~-fG-----~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLP-FG-----KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTT-TS-----CCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cC-----CEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34457787765554556666555544 33 45567777777899999987 66776665442 67778888
Q ss_pred eccCC
Q 006272 587 VLKQL 591 (652)
Q Consensus 587 ~~~~l 591 (652)
+++..
T Consensus 103 ~a~~k 107 (119)
T 2ad9_A 103 FSNHK 107 (119)
T ss_dssp ECSSS
T ss_pred EccCC
Confidence 87643
No 300
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.09 E-value=9.2 Score=30.10 Aligned_cols=70 Identities=7% Similarity=0.049 Sum_probs=44.8
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
...+|++..-....+..++..++..+ + .|..+.+..+ ..++||++.. +.|..++..++ .++.+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPF-G-----DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTT-S-----CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcc-C-----CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34577776655555666776666553 2 3444555433 3689999987 67777776665 56677
Q ss_pred eeeeccC
Q 006272 584 SLEVLKQ 590 (652)
Q Consensus 584 ~l~~~~~ 590 (652)
.+..+..
T Consensus 85 ~V~~a~~ 91 (102)
T 2cqb_A 85 RVNLAKP 91 (102)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 7777653
No 301
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.04 E-value=17 Score=29.65 Aligned_cols=76 Identities=9% Similarity=0.054 Sum_probs=49.5
Q ss_pred CcEEEEEecCCC--ccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhccC---------CCc
Q 006272 515 DHVTVVLEAGKP--IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGADN---------AAN 582 (652)
Q Consensus 515 ~~~~~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~~---------~~~ 582 (652)
+..+|++..|.- ..+..++..++..+ | .|..+.+..+++++||++.. ++|..++..++. +..
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~f-G-----~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKC-G-----LVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHH-S-----CEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhc-C-----CeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 345677754443 34555665555553 3 34556666677899999988 778888877763 234
Q ss_pred eeeeeccCCCcchh
Q 006272 583 VSLEVLKQLPPLQE 596 (652)
Q Consensus 583 i~l~~~~~lp~~~~ 596 (652)
+.+.++..+|...+
T Consensus 98 l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 98 LYLNFVEKVQWSGP 111 (114)
T ss_dssp CEEEEESCCCCSSC
T ss_pred EEEEecccCcccCC
Confidence 77788887776544
No 302
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=63.67 E-value=3.8 Score=40.29 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=16.8
Q ss_pred hcCCcEEEEccCCCCchhhh
Q 006272 144 LDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~~ 163 (652)
.....+++.++||+|||+.+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 35678999999999999854
No 303
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=63.64 E-value=4.3 Score=40.31 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=21.2
Q ss_pred HHHHHHhcCCc--EEEEccCCCCchhhh
Q 006272 138 MTFDMVLDGSD--LVGRARTGQGKTLAF 163 (652)
Q Consensus 138 ~~i~~~l~~~d--vl~~a~TGsGKTl~~ 163 (652)
..+..++.|.+ +++.++||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35667788887 778999999999764
No 304
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.61 E-value=41 Score=26.32 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=49.8
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeecc
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVLK 589 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~~ 589 (652)
..+.+++..-....++..+...|...+.... ..| +++.. +++||.+.. +.|..+...++ .++.+.+.+++
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG-G~V--l~Vtg--G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCG-GKV--LSITG--CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTT-CCE--EECCT--TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcC-Cee--EEEec--CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 4455777776665666666555555332210 012 23344 899999988 77777777776 78899999998
Q ss_pred CCCcchh
Q 006272 590 QLPPLQE 596 (652)
Q Consensus 590 ~lp~~~~ 596 (652)
..+....
T Consensus 83 ~~sd~~~ 89 (96)
T 2diu_A 83 KNRELCE 89 (96)
T ss_dssp CSCCCCC
T ss_pred CCcceeE
Confidence 7766544
No 305
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=63.58 E-value=13 Score=28.76 Aligned_cols=77 Identities=5% Similarity=-0.082 Sum_probs=46.6
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEee---cCCCceeeecCh-hhHHHHHhhcc----CCCceeee
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALT---ADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLE 586 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~---~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~ 586 (652)
...++++..-....+..++...|...+... ..|..+.+. ...+++||++.. +.|..++..++ .++.+.+.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~--G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRF--GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGG--SCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhC--CCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445778776555556666763333433221 134445544 234799999987 66777776655 66677777
Q ss_pred eccCCCc
Q 006272 587 VLKQLPP 593 (652)
Q Consensus 587 ~~~~lp~ 593 (652)
.+...+.
T Consensus 85 ~a~~~~~ 91 (97)
T 1nu4_A 85 YAKTDSD 91 (97)
T ss_dssp ECSSCCT
T ss_pred EccCCCc
Confidence 7765543
No 306
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=63.53 E-value=3.6 Score=37.73 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCCchhhhH
Q 006272 145 DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~ 164 (652)
.|+-+++.+|+|+|||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 46678999999999998543
No 307
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.43 E-value=21 Score=27.15 Aligned_cols=67 Identities=10% Similarity=0.050 Sum_probs=44.4
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeecc
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVLK 589 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~~ 589 (652)
...+|++..-....+..++..++..+ | .|..+.+.. .++||++.. +.|..++..++ .++.+.+..+.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~v~~~~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERR-G-----RVIECDVVK--DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHH-S-----CEEEEEECS--SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcC-C-----CEEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 34567777655555667776666653 2 355566666 489999988 67777776665 56666677664
No 308
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=63.21 E-value=5.3 Score=37.91 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=28.3
Q ss_pred CCcccccCCCHHHHHHHHHCC--CCCChHHHHHHHHHHhcCCcEEEEccCCCCchhhh
Q 006272 108 PNAVSRFRISVPLREKLKSKG--IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~ 163 (652)
+..|+++.-.+.+.+.|...- +..+..++.. .+...+.+++.+|+|+|||+..
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHH
Confidence 456777766666666554320 0000000000 0112356999999999999754
No 309
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=63.20 E-value=4.3 Score=40.67 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=20.0
Q ss_pred HHHHHhcCCc--EEEEccCCCCchhhh
Q 006272 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (652)
Q Consensus 139 ~i~~~l~~~d--vl~~a~TGsGKTl~~ 163 (652)
.+..++.|.+ ++.-++||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4556678877 778999999999765
No 310
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=63.18 E-value=4.4 Score=40.56 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEEccCCCCchhhh
Q 006272 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (652)
Q Consensus 139 ~i~~~l~~~d--vl~~a~TGsGKTl~~ 163 (652)
.+..++.|.+ +++-++||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4455678877 788999999999864
No 311
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=63.14 E-value=4.3 Score=40.74 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEEccCCCCchhhh
Q 006272 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (652)
Q Consensus 139 ~i~~~l~~~d--vl~~a~TGsGKTl~~ 163 (652)
.+..++.|.+ ++..++||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 4455678877 788999999999864
No 312
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=63.11 E-value=4.3 Score=40.79 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=20.5
Q ss_pred HHHHHHhcCCc--EEEEccCCCCchhhh
Q 006272 138 MTFDMVLDGSD--LVGRARTGQGKTLAF 163 (652)
Q Consensus 138 ~~i~~~l~~~d--vl~~a~TGsGKTl~~ 163 (652)
..+..++.|.+ +++-++||||||.+.
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 35566778887 678899999999864
No 313
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=63.11 E-value=10 Score=34.19 Aligned_cols=52 Identities=27% Similarity=0.251 Sum_probs=37.0
Q ss_pred CCCeEEEEecchhHHHHHHHhcC------CCcccccccchHHHHHHHhhhcCCCceEEEEcc
Q 006272 362 SGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~ 417 (652)
...++||.|+++.-+.++++.+. .+..++|+.........+. ....|+|+|.
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~ 128 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATP 128 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECH
Confidence 45689999999998888877664 4566788777655444332 2467999994
No 314
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=63.02 E-value=4.3 Score=40.97 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEEccCCCCchhhh
Q 006272 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (652)
Q Consensus 139 ~i~~~l~~~d--vl~~a~TGsGKTl~~ 163 (652)
.+..++.|.+ +++-++||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 4556678877 678999999999764
No 315
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=63.02 E-value=4.1 Score=40.68 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEEccCCCCchhhh
Q 006272 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (652)
Q Consensus 139 ~i~~~l~~~d--vl~~a~TGsGKTl~~ 163 (652)
.+..++.|.+ +++-++||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4455678877 688999999999874
No 316
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=62.87 E-value=4.5 Score=41.40 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=20.4
Q ss_pred HHHHHhcCCc--EEEEccCCCCchhhhH
Q 006272 139 TFDMVLDGSD--LVGRARTGQGKTLAFV 164 (652)
Q Consensus 139 ~i~~~l~~~d--vl~~a~TGsGKTl~~~ 164 (652)
.+..++.|.+ +++-++||||||.+..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 4556678877 7789999999998754
No 317
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=62.86 E-value=5.4 Score=44.77 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcc
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~ 226 (652)
+-+|+.+|+|+|||+.+-.-+-+.-.. +|.+-.-+|
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~-----------------f~~v~~~~l--------------------------- 547 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQAN-----------------FISIKGPEL--------------------------- 547 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCE-----------------EEECCHHHH---------------------------
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCc-----------------eEEeccchh---------------------------
Q ss_pred hHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEecCcchhhhhcC-------------cHHHHHHHHHhccCCC
Q 006272 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-------------FVEDVELILGKVEDAN 293 (652)
Q Consensus 227 ~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViDEah~~l~~g-------------f~~~~~~i~~~~~~~~ 293 (652)
..-.++..++.+..+....- -....+|+|||+|.++..- ...++...+..+..
T Consensus 548 -----------~s~~vGese~~vr~lF~~Ar-~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~-- 613 (806)
T 3cf2_A 548 -----------LTMWFGESEANVREIFDKAR-QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-- 613 (806)
T ss_dssp -----------HTTTCSSCHHHHHHHHHHHH-TTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS--
T ss_pred -----------hccccchHHHHHHHHHHHHH-HcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC--
Q ss_pred CceEEEEccc
Q 006272 294 KVQTLLFSAT 303 (652)
Q Consensus 294 ~~q~l~~SAT 303 (652)
...++++-||
T Consensus 614 ~~~V~vi~aT 623 (806)
T 3cf2_A 614 KKNVFIIGAT 623 (806)
T ss_dssp SSSEEEECC-
T ss_pred CCCEEEEEeC
No 318
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=62.79 E-value=13 Score=34.56 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=36.5
Q ss_pred CCCeEEEEecchhHHHHHHHhcC--------CCcccccccchHHHHHHHhhhcCCCceEEEEcc-----cccc-CCCCCC
Q 006272 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-----VAAR-GLDIND 427 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~--------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~-Gldi~~ 427 (652)
...++||.++++.-+.++++.+. .+..++|+.... .....+..+...|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 45689999999999988887764 233445554432 233444566688999993 2222 244455
Q ss_pred ccEEE
Q 006272 428 VQLII 432 (652)
Q Consensus 428 v~~VI 432 (652)
+++||
T Consensus 174 ~~~lV 178 (237)
T 3bor_A 174 IKMFV 178 (237)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 55554
No 319
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=62.77 E-value=4.5 Score=40.76 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEEccCCCCchhhh
Q 006272 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (652)
Q Consensus 139 ~i~~~l~~~d--vl~~a~TGsGKTl~~ 163 (652)
.+..++.|.+ ++.-++||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 4455678877 788999999999874
No 320
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=62.76 E-value=4.5 Score=40.82 Aligned_cols=25 Identities=20% Similarity=0.517 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEEccCCCCchhhh
Q 006272 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (652)
Q Consensus 139 ~i~~~l~~~d--vl~~a~TGsGKTl~~ 163 (652)
.+..++.|.+ ++..++||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4556678877 778999999999764
No 321
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.71 E-value=16 Score=28.87 Aligned_cols=70 Identities=6% Similarity=-0.035 Sum_probs=45.2
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc------CCCceeeee
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD------NAANVSLEV 587 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~------~~~~i~l~~ 587 (652)
+..+|++..-....+..++..++.. +| .|..+.+..+++++||++.. +.|..++..++ .++.+.+.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~-fG-----~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLP-FG-----KVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTT-TS-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cC-----CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 4457777765544555556444433 23 45556777778999999987 66777766542 566777777
Q ss_pred ccC
Q 006272 588 LKQ 590 (652)
Q Consensus 588 ~~~ 590 (652)
++.
T Consensus 88 a~~ 90 (101)
T 2cq1_A 88 SNH 90 (101)
T ss_dssp CSC
T ss_pred cCc
Confidence 754
No 322
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=62.65 E-value=4.4 Score=40.67 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=20.6
Q ss_pred HHHHHHhcCCc--EEEEccCCCCchhhh
Q 006272 138 MTFDMVLDGSD--LVGRARTGQGKTLAF 163 (652)
Q Consensus 138 ~~i~~~l~~~d--vl~~a~TGsGKTl~~ 163 (652)
..+..++.|.+ +++-++||||||.+.
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 34566778887 678899999999865
No 323
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.58 E-value=26 Score=27.06 Aligned_cols=69 Identities=10% Similarity=0.138 Sum_probs=43.9
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeecc
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVLK 589 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~~ 589 (652)
...+|++.. ...+..++..++.. +| .|..+.+.....++||++.. +.|..++..++ .++.+.+..+.
T Consensus 14 ~~~~l~V~n--~~~t~~~l~~~F~~-~G-----~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYG--EDMTPTLLRGAFSP-FG-----NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEEC--SSCCHHHHHHHHTT-TS-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcC--CCCCHHHHHHHHhh-CC-----CEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 345777765 23455556555544 22 45556666667899999987 67777777766 56666666665
Q ss_pred CC
Q 006272 590 QL 591 (652)
Q Consensus 590 ~l 591 (652)
..
T Consensus 86 ~~ 87 (97)
T 1x5p_A 86 KQ 87 (97)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 324
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=62.50 E-value=4.5 Score=40.55 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=21.9
Q ss_pred HHHHHHhcCCc--EEEEccCCCCchhhhH
Q 006272 138 MTFDMVLDGSD--LVGRARTGQGKTLAFV 164 (652)
Q Consensus 138 ~~i~~~l~~~d--vl~~a~TGsGKTl~~~ 164 (652)
..+..++.|.+ +++-++||||||.+..
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 36777888987 6788999999998753
No 325
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=62.50 E-value=4.3 Score=40.87 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=20.9
Q ss_pred HHHHHHhcCCc--EEEEccCCCCchhhhH
Q 006272 138 MTFDMVLDGSD--LVGRARTGQGKTLAFV 164 (652)
Q Consensus 138 ~~i~~~l~~~d--vl~~a~TGsGKTl~~~ 164 (652)
..+..++.|.+ +++-++||||||.+..
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 34556778887 7789999999997643
No 326
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=62.43 E-value=2.9 Score=41.59 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=19.7
Q ss_pred HHHHHhcCCcEEEEccCCCCchhhh
Q 006272 139 TFDMVLDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 139 ~i~~~l~~~dvl~~a~TGsGKTl~~ 163 (652)
++..+..+.++++.+|+|+|||...
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHH
Confidence 3344556889999999999999743
No 327
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=62.34 E-value=5.4 Score=30.31 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=44.5
Q ss_pred cEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCcee
Q 006272 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANVS 584 (652)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i~ 584 (652)
..++++..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|..++..++ .++.+.
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPF-G-----RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 79 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGG-S-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhc-C-----CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4577777655556667776666653 2 3444555443 2589999987 67777776665 667777
Q ss_pred eeeccCCC
Q 006272 585 LEVLKQLP 592 (652)
Q Consensus 585 l~~~~~lp 592 (652)
+..++..|
T Consensus 80 v~~a~~kp 87 (87)
T 3bs9_A 80 TNWATRKP 87 (87)
T ss_dssp EEEEC---
T ss_pred EEecCCCC
Confidence 77776543
No 328
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=62.34 E-value=24 Score=37.22 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=52.4
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCceE
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~ 264 (652)
..+|++..+.-+..+++.+... +..+..++|+.+.......+ ....+|+|||+..+-. .+++.++++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 4566666677676677766653 34788899988766544333 3467899999766544 568899999
Q ss_pred EecCcch
Q 006272 265 RVLDEAD 271 (652)
Q Consensus 265 lViDEah 271 (652)
||+..+.
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9998777
No 329
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=62.29 E-value=35 Score=26.47 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=44.9
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeecc
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVLK 589 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~~ 589 (652)
...+|++..-....+..++..++..+ +......+.........+++||++.. +.|..++. ++ .++.+.+..+.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISEL-FAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH-HHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh-CCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 45688887766666677777777664 32222223333333445799999988 67777776 65 55566666664
No 330
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=62.18 E-value=4.8 Score=40.28 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEEccCCCCchhhh
Q 006272 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (652)
Q Consensus 139 ~i~~~l~~~d--vl~~a~TGsGKTl~~ 163 (652)
.+..++.|.+ ++.-++||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4556678877 678899999999864
No 331
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=62.16 E-value=4.6 Score=40.57 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=20.0
Q ss_pred HHHHHhcCCc--EEEEccCCCCchhhh
Q 006272 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (652)
Q Consensus 139 ~i~~~l~~~d--vl~~a~TGsGKTl~~ 163 (652)
.+..++.|.+ +++-++||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4556678877 788999999999864
No 332
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=62.13 E-value=3.5 Score=40.99 Aligned_cols=17 Identities=35% Similarity=0.227 Sum_probs=14.5
Q ss_pred CcEEEEccCCCCchhhh
Q 006272 147 SDLVGRARTGQGKTLAF 163 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~ 163 (652)
+-+++.+|||||||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999743
No 333
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=62.07 E-value=17 Score=39.55 Aligned_cols=68 Identities=10% Similarity=-0.007 Sum_probs=47.2
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEe
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lV 266 (652)
.++||.|+|+.-+..+++.|... ++++..++|.........-.....+|+|||. .+. ..+++. +++||
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~-rGiDi~-v~~VI 423 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISE-MGANFR-AGRVI 423 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGG-TTCCCC-CSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHH-cCcccC-ceEEE
Confidence 36999999999999999998875 5778888875332222222235689999994 333 345664 77765
No 334
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=62.00 E-value=27 Score=37.08 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=27.1
Q ss_pred CCCceEEecCcchhhhhcC-----cHHHHHHHHHhccCCCCceEEEEccc
Q 006272 259 LSSLKFRVLDEADEMLRMG-----FVEDVELILGKVEDANKVQTLLFSAT 303 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~g-----f~~~~~~i~~~~~~~~~~q~l~~SAT 303 (652)
..+.++||+| -=.-++.. ....+..++..+... ..-+++.|-.
T Consensus 369 ~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~-g~tvilvsh~ 416 (525)
T 1tf7_A 369 DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQE-EITGLFTNTS 416 (525)
T ss_dssp TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEEC
T ss_pred hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhC-CCEEEEEECc
Confidence 4567899999 66666776 667777777666542 3444444443
No 335
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=62.00 E-value=5 Score=41.09 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=21.4
Q ss_pred HHHHHhcCCc--EEEEccCCCCchhhhH
Q 006272 139 TFDMVLDGSD--LVGRARTGQGKTLAFV 164 (652)
Q Consensus 139 ~i~~~l~~~d--vl~~a~TGsGKTl~~~ 164 (652)
.+..++.|.+ +++.++||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 6677788987 6788999999998753
No 336
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.81 E-value=13 Score=29.23 Aligned_cols=71 Identities=1% Similarity=-0.074 Sum_probs=44.3
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC----CCceeeecCh-hhHHHHHhhcc----CCCceee
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD----GNGAVFDVPV-ADLDLFRSGAD----NAANVSL 585 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d----~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l 585 (652)
...+|++..-....+..++..++.. +| .|..+.+..+ ..++||++.. +.|..++..++ .++.+.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G-----~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSP-FG-----TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTT-TS-----CEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cC-----CEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4457777765554556666555544 22 3445555533 3689999988 67777776655 6677777
Q ss_pred eeccCC
Q 006272 586 EVLKQL 591 (652)
Q Consensus 586 ~~~~~l 591 (652)
..+...
T Consensus 88 ~~a~~~ 93 (103)
T 2d9p_A 88 ALAQRK 93 (103)
T ss_dssp EECSSC
T ss_pred EEeccc
Confidence 777543
No 337
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=61.69 E-value=45 Score=32.30 Aligned_cols=20 Identities=20% Similarity=0.013 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchhhhHH
Q 006272 146 GSDLVGRARTGQGKTLAFVL 165 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~l 165 (652)
++-+++.+++|+|||+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45677889999999975543
No 338
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=61.62 E-value=3.9 Score=37.28 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCCCchhh
Q 006272 145 DGSDLVGRARTGQGKTLA 162 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~ 162 (652)
.++-+++.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 356689999999999864
No 339
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=61.62 E-value=4.2 Score=36.96 Aligned_cols=20 Identities=20% Similarity=0.012 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCCCchhhhH
Q 006272 145 DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~ 164 (652)
.++.+++.+++|||||+..-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 56789999999999998543
No 340
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=61.46 E-value=3.5 Score=40.55 Aligned_cols=17 Identities=24% Similarity=0.014 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCchhhh
Q 006272 147 SDLVGRARTGQGKTLAF 163 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~ 163 (652)
+-+++.+|||||||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 45789999999999753
No 341
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=61.34 E-value=4.5 Score=40.94 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=20.6
Q ss_pred HHHHHHhcCCc--EEEEccCCCCchhhhH
Q 006272 138 MTFDMVLDGSD--LVGRARTGQGKTLAFV 164 (652)
Q Consensus 138 ~~i~~~l~~~d--vl~~a~TGsGKTl~~~ 164 (652)
..+..++.|.+ +++.++||||||.+..
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHHhCCceEEEEeecCCCCCcceecc
Confidence 34456678877 7889999999997643
No 342
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=61.22 E-value=17 Score=33.70 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=35.5
Q ss_pred CCCeEEEEecchhHHHHHHHhcC--------CCcccccccchHHHHHHHhhhcCCCceEEEEcc
Q 006272 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~--------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~ 417 (652)
.+.++||.++++.-+.++++.+. .+..+||+.........+ ...+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 45789999999999888877664 455678887665544433 3578999994
No 343
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=61.14 E-value=4.2 Score=37.00 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCchhhhH
Q 006272 145 DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~ 164 (652)
.|+-+++++|+|+|||+..-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46779999999999998543
No 344
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=61.04 E-value=4.2 Score=41.02 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=20.6
Q ss_pred HHHHHhcCCc--EEEEccCCCCchhhh
Q 006272 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (652)
Q Consensus 139 ~i~~~l~~~d--vl~~a~TGsGKTl~~ 163 (652)
.+..++.|.+ ++..++||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5667788887 678899999999864
No 345
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=60.90 E-value=3.8 Score=40.17 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=13.5
Q ss_pred cEEEEccCCCCchhhh
Q 006272 148 DLVGRARTGQGKTLAF 163 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~ 163 (652)
-+++++|||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999754
No 346
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=60.90 E-value=4.5 Score=40.47 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=21.4
Q ss_pred HHHHHHhcCCc--EEEEccCCCCchhhhH
Q 006272 138 MTFDMVLDGSD--LVGRARTGQGKTLAFV 164 (652)
Q Consensus 138 ~~i~~~l~~~d--vl~~a~TGsGKTl~~~ 164 (652)
..+..++.|.+ +++-++||||||.+..
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 35667778887 6789999999998753
No 347
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=60.76 E-value=14 Score=33.74 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=37.4
Q ss_pred CCeEEEEecchhHHHHHHHhcC---------CCcccccccchHHHHHHHhhhcCCCceEEEEcc
Q 006272 363 GGRTIIFTETKESASQLADLLP---------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (652)
Q Consensus 363 ~~~~iVF~~s~~~~~~l~~~l~---------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~ 417 (652)
..++||.|+++.-+.++++.+. .+..++|+.+...+...+ ..+..+|+|+|.
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~~~~~i~v~T~ 142 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKNCPHIVVGTP 142 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH---HHSCCSEEEECH
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH---hcCCCCEEEeCH
Confidence 3489999999998887765543 456688888766554443 445678999994
No 348
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.48 E-value=13 Score=28.94 Aligned_cols=68 Identities=7% Similarity=0.023 Sum_probs=42.6
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
...+|++..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|..++. ++ .++.+
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l 81 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKF-G-----VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKV 81 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSS-S-----CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEE
Confidence 44578877655556666776666552 2 3444555433 3689999988 66666665 44 56667
Q ss_pred eeeecc
Q 006272 584 SLEVLK 589 (652)
Q Consensus 584 ~l~~~~ 589 (652)
.+..+.
T Consensus 82 ~V~~a~ 87 (99)
T 2dgs_A 82 EVKRAE 87 (99)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 776665
No 349
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=60.26 E-value=4.5 Score=36.84 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=16.9
Q ss_pred hcCCcEEEEccCCCCchhhh
Q 006272 144 LDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~~ 163 (652)
+.++-+++++|+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 36788999999999999844
No 350
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=60.10 E-value=3.4 Score=41.99 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.2
Q ss_pred HhcCCcEEEEccCCCCchhhh
Q 006272 143 VLDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~ 163 (652)
+..+..+++.+|||||||+..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345678999999999999854
No 351
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.06 E-value=5.3 Score=40.95 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=21.4
Q ss_pred HHHHHHhcCCc--EEEEccCCCCchhhh
Q 006272 138 MTFDMVLDGSD--LVGRARTGQGKTLAF 163 (652)
Q Consensus 138 ~~i~~~l~~~d--vl~~a~TGsGKTl~~ 163 (652)
..+..++.|.+ +++.++||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 36777888987 678899999999865
No 352
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=59.96 E-value=19 Score=28.39 Aligned_cols=72 Identities=3% Similarity=0.001 Sum_probs=45.6
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC-----CCceeeecCh-hhHHHHHhhcc----CC---C
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-----GNGAVFDVPV-ADLDLFRSGAD----NA---A 581 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d-----~~~a~~dv~~-~~a~~~~~~~~----~~---~ 581 (652)
...+|++..-....+..++..++..+ | .|..+.+..+ ..++||++.. +.|..++..++ .+ +
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPF-G-----VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT-S-----CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 45678887655555666676666553 2 3445565544 3689999988 67777776665 33 5
Q ss_pred ceeeeeccCCC
Q 006272 582 NVSLEVLKQLP 592 (652)
Q Consensus 582 ~i~l~~~~~lp 592 (652)
.+.+..+...+
T Consensus 88 ~l~V~~a~~~~ 98 (105)
T 2dnh_A 88 SLVVKFADTDK 98 (105)
T ss_dssp CCEEEESCSSC
T ss_pred cEEEEECccCc
Confidence 67777765443
No 353
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.87 E-value=19 Score=26.93 Aligned_cols=57 Identities=7% Similarity=0.026 Sum_probs=39.2
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhc
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGA 577 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~ 577 (652)
...++++..-....+..++..++..+ | .|..+.+..+.+++||++.. +.|..++..+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~-G-----~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQF-G-----EIRTITVVQRQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTT-S-----CEEEEEEEGGGTEEEEEESSHHHHHHHHHTT
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhC-C-----CEeEEEEECCCCEEEEEECCHHHHHHHHHHh
Confidence 44577777655556667776666653 2 35556676677899999988 6777777766
No 354
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=59.78 E-value=4.6 Score=40.98 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=19.0
Q ss_pred HHHHhcCCc--EEEEccCCCCchhhh
Q 006272 140 FDMVLDGSD--LVGRARTGQGKTLAF 163 (652)
Q Consensus 140 i~~~l~~~d--vl~~a~TGsGKTl~~ 163 (652)
+..++.|.+ ++.-++||||||.+.
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 345678877 778999999999765
No 355
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=59.73 E-value=23 Score=27.62 Aligned_cols=68 Identities=6% Similarity=-0.020 Sum_probs=44.8
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeec
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVL 588 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~ 588 (652)
...+|++..-....+..++..++..+ | .|..+.+....+++||++.. +.|..++..++ .++.+.+..+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~-G-----~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF-G-----FILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT-S-----CCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC-C-----CEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 34688887666556677776666653 3 35556776777899999987 66777776655 4444444443
No 356
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=59.67 E-value=5.4 Score=40.47 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=20.6
Q ss_pred HHHHHhcCCc--EEEEccCCCCchhhhH
Q 006272 139 TFDMVLDGSD--LVGRARTGQGKTLAFV 164 (652)
Q Consensus 139 ~i~~~l~~~d--vl~~a~TGsGKTl~~~ 164 (652)
.+..++.|.+ +++-++||||||.+..
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 4556778877 7889999999998754
No 357
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=59.56 E-value=4 Score=41.15 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCchhhh
Q 006272 145 DGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~ 163 (652)
.+.-+++.+|||||||+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4557999999999999853
No 358
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.44 E-value=15 Score=29.54 Aligned_cols=74 Identities=8% Similarity=-0.002 Sum_probs=43.9
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhh---hccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CC
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKV---ELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NA 580 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~---~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~ 580 (652)
...+|+|..-....+..++..++..+ +.... .....+.+..+ ..++||++.. +.|..++..++ .+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQC-GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTT-SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc-CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 45688887665555666776666653 32110 00003555444 3699999988 67777776665 55
Q ss_pred Cceeeeecc
Q 006272 581 ANVSLEVLK 589 (652)
Q Consensus 581 ~~i~l~~~~ 589 (652)
+.+.+..+.
T Consensus 93 ~~l~V~~a~ 101 (113)
T 2cpe_A 93 SKLKVSLAR 101 (113)
T ss_dssp EECEEECSS
T ss_pred CEEEEEECC
Confidence 566666664
No 359
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=59.18 E-value=19 Score=33.06 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=32.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcC-------CCcccccccchHHHHHHHhhhcCCCceEEEEcc
Q 006272 362 SGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~-------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~ 417 (652)
.+.++||.++++.-+.++++.+. .+..++|+.....+...+ . ...+|+|+|.
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp 151 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATP 151 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECH
Confidence 45789999999999988887665 345667776654443333 2 2478999994
No 360
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=59.04 E-value=3.1 Score=37.02 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=17.3
Q ss_pred hcCCcEEEEccCCCCchhhhH
Q 006272 144 LDGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~~~ 164 (652)
..++.+++.+++|||||+..-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999998544
No 361
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=58.86 E-value=18 Score=35.46 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=48.9
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCce
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~ 263 (652)
.++||.+++++-+..+++.+. .+..++|+.+.......+ ....+|+|+|. .+ ...+++.+++
T Consensus 221 ~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~-~~Gid~~~~~ 286 (337)
T 2z0m_A 221 KGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VA-SRGLDIPLVE 286 (337)
T ss_dssp SSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HH-HTTCCCCCBS
T ss_pred CcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----cc-ccCCCccCCC
Confidence 359999999998887776554 466778887766554433 34689999994 33 3467888999
Q ss_pred EEecCcc
Q 006272 264 FRVLDEA 270 (652)
Q Consensus 264 ~lViDEa 270 (652)
+||.-..
T Consensus 287 ~Vi~~~~ 293 (337)
T 2z0m_A 287 KVINFDA 293 (337)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 8886443
No 362
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=58.83 E-value=4.9 Score=35.79 Aligned_cols=19 Identities=21% Similarity=0.044 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
.+.+++.+++|||||+..-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4679999999999998544
No 363
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=58.73 E-value=4.4 Score=38.57 Aligned_cols=16 Identities=25% Similarity=-0.097 Sum_probs=13.5
Q ss_pred cEEEEccCCCCchhhh
Q 006272 148 DLVGRARTGQGKTLAF 163 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~ 163 (652)
-+++++|||||||+..
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3789999999999743
No 364
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=58.68 E-value=2.9 Score=37.53 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=17.0
Q ss_pred HhcCCcEEEEccCCCCchhhh
Q 006272 143 VLDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~ 163 (652)
+..|.-+++.+|+|||||+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 345677999999999999843
No 365
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=58.65 E-value=5.8 Score=41.13 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=20.0
Q ss_pred HHHHHhcCCc--EEEEccCCCCchhhh
Q 006272 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (652)
Q Consensus 139 ~i~~~l~~~d--vl~~a~TGsGKTl~~ 163 (652)
.+..++.|.+ +++.++||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4555678877 788999999999865
No 366
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=58.29 E-value=12 Score=37.68 Aligned_cols=19 Identities=37% Similarity=0.384 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
...+++.+|+|+|||...-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 367
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.23 E-value=32 Score=27.40 Aligned_cols=71 Identities=7% Similarity=0.005 Sum_probs=46.0
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC----CCceeeecCh-hhHHHHHhhcc----CCCcee
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD----GNGAVFDVPV-ADLDLFRSGAD----NAANVS 584 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d----~~~a~~dv~~-~~a~~~~~~~~----~~~~i~ 584 (652)
....++++..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|..++..++ .++.+.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G-----~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQF-G-----KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGT-C-----CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhc-C-----CEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345688887655556666776666553 3 3444555443 4799999988 67777776665 566666
Q ss_pred eeeccC
Q 006272 585 LEVLKQ 590 (652)
Q Consensus 585 l~~~~~ 590 (652)
++.++.
T Consensus 101 V~~a~~ 106 (109)
T 2err_A 101 VNNATA 106 (109)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 666653
No 368
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.18 E-value=15 Score=28.58 Aligned_cols=68 Identities=6% Similarity=0.022 Sum_probs=41.8
Q ss_pred cEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC---------CCceeeecCh-hhHHHHHhhcc----CCC
Q 006272 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD---------GNGAVFDVPV-ADLDLFRSGAD----NAA 581 (652)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d---------~~~a~~dv~~-~~a~~~~~~~~----~~~ 581 (652)
..+|++..-....+..++..++..+ | .|..+.+..+ ..++||++.. +.|..++..++ .++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKV-G-----AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH 78 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTT-S-----CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 3467776655556667776666653 3 2333443321 2589999987 77777777666 555
Q ss_pred ceeeeecc
Q 006272 582 NVSLEVLK 589 (652)
Q Consensus 582 ~i~l~~~~ 589 (652)
.+.+..+.
T Consensus 79 ~l~V~~a~ 86 (98)
T 2cpf_A 79 KLEVRISE 86 (98)
T ss_dssp ECEEECSS
T ss_pred EEEEEEcc
Confidence 66666654
No 369
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=58.17 E-value=4.9 Score=36.47 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.7
Q ss_pred hcCCcEEEEccCCCCchhhh
Q 006272 144 LDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~~ 163 (652)
..|.-+++.+|+|||||+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35778899999999999854
No 370
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=58.16 E-value=5.7 Score=40.17 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=21.0
Q ss_pred HHHHHhcCCc--EEEEccCCCCchhhhH
Q 006272 139 TFDMVLDGSD--LVGRARTGQGKTLAFV 164 (652)
Q Consensus 139 ~i~~~l~~~d--vl~~a~TGsGKTl~~~ 164 (652)
.+..++.|.+ +++-++||||||.+..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 5667788887 6788999999997653
No 371
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=58.10 E-value=30 Score=26.70 Aligned_cols=67 Identities=4% Similarity=-0.090 Sum_probs=44.9
Q ss_pred EEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeecc
Q 006272 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVLK 589 (652)
Q Consensus 517 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~~ 589 (652)
..+++..-..-.+...++.++..+ | .|..+.+...++++||+++. +.|..+...++ .++.+.++++.
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~-G-----~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQH-G-----PLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHH-S-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ceEEEeCCCccCCHHHHHHHHHhh-C-----CEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 345554444445666776666654 2 23335555577999999998 58888888887 67777777773
No 372
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=57.95 E-value=4.2 Score=35.94 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
++-++++++.|||||+..-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999998543
No 373
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=57.94 E-value=8.7 Score=46.78 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=53.4
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCc
Q 006272 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~ 225 (652)
|+-+.+.+|.|||||+..+-.+.+....+. .|+++.+--+|-... +++++ .++
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~-------------~~~~i~~e~~~~~~~---~~~~G--v~~--------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGK-------------TCAFIDAEHALDPIY---ARKLG--VDI--------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC-------------CEEEECTTSCCCHHH---HHHTT--CCG---------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCC-------------eEEEEecCCCCCHHH---HHHcC--CCH---------
Confidence 467999999999999876655555554433 378888765555443 44444 221
Q ss_pred chHHHHHHhcCCCcEEEeCcHHHHHHHHh--CCcCCCCceEEecCcchhhh
Q 006272 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIER--GNIDLSSLKFRVLDEADEML 274 (652)
Q Consensus 226 ~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~--~~~~l~~~~~lViDEah~~l 274 (652)
-+++|+-|+.--++|.- ..+.-..+++||||.+..+.
T Consensus 1484 ------------~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1484 ------------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp ------------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ------------HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCC
Confidence 12666666433222211 01112346789999888765
No 374
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=57.87 E-value=3.9 Score=35.81 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=14.1
Q ss_pred cEEEEccCCCCchhhhH
Q 006272 148 DLVGRARTGQGKTLAFV 164 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~ 164 (652)
-+++.|++|||||+..-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 375
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=57.43 E-value=4.1 Score=37.19 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=17.3
Q ss_pred HhcCCcEEEEccCCCCchhhh
Q 006272 143 VLDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~ 163 (652)
+..++-+++++|+|||||+..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 346778999999999999844
No 376
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=57.34 E-value=14 Score=39.88 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=27.4
Q ss_pred CCCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEcc
Q 006272 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (652)
Q Consensus 259 l~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~SA 302 (652)
+.+.+++++||+-.-+|......+...+..+.. . .++++.+
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~-~tvi~it 536 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQK--N-KTVLVIA 536 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--C-CEEEEEe
Confidence 456778999999888887766667666666543 2 3455443
No 377
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=57.32 E-value=11 Score=39.73 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=20.4
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
.+.++++.+.||||||.+.-..++..+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999865444444343
No 378
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=57.30 E-value=39 Score=26.86 Aligned_cols=76 Identities=7% Similarity=0.013 Sum_probs=49.0
Q ss_pred cccCCCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----
Q 006272 510 LSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD---- 578 (652)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~---- 578 (652)
....++..+|++..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|..++..++
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~-G-----~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i 93 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPF-G-----RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 93 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTT-S-----CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3445566788888766556677776666553 3 3444555433 2589999988 67777776555
Q ss_pred CCCceeeeeccCC
Q 006272 579 NAANVSLEVLKQL 591 (652)
Q Consensus 579 ~~~~i~l~~~~~l 591 (652)
.++.+.+..++..
T Consensus 94 ~g~~l~V~~a~~k 106 (108)
T 2jrs_A 94 AGRPMKVGHVTER 106 (108)
T ss_dssp SSSCCEEECSCSS
T ss_pred CCEEEEEEEcccC
Confidence 6677777776543
No 379
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=57.26 E-value=4.1 Score=39.69 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
.+.+++.||+|+|||+..-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5789999999999998543
No 380
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=57.26 E-value=5.5 Score=36.14 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCCchhhh
Q 006272 145 DGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~ 163 (652)
.|.-+.+.+|+|||||+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677899999999999854
No 381
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=57.23 E-value=13 Score=40.66 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=48.8
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEe
Q 006272 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (652)
Q Consensus 187 ~~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lV 266 (652)
..++||.+||+.-+.++++.|+. .++.+..++|+.+... ..+.+.+|+|+|. .+.+ .+++. +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~----~g~~v~~lHG~l~q~e---r~~~~~~VLVATd-----Vaer-GIDId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSG----LGINAVAYYRGLDVSV---IPTIGDVVVVATD-----ALMT-GYTGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECTTSCGGG---SCSSSCEEEEECT-----THHH-HCCCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHh----CCCcEEEecCCCCHHH---HHhCCCcEEEECC-----hHHc-cCCCC-CcEEE
Confidence 45799999999999999998876 3678999999987653 2345569999994 3333 34454 77766
No 382
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=57.15 E-value=30 Score=27.73 Aligned_cols=69 Identities=10% Similarity=-0.011 Sum_probs=47.1
Q ss_pred cEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeeccC
Q 006272 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVLKQ 590 (652)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~~~ 590 (652)
..+|++..-....+..++..++..+ | .|..+.+...+.++||++.. +.|..++..++ .++.+.++.+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~-G-----~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRF-G-----SLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTT-S-----CEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 3577777655455666776666553 3 34456666677899999987 67777777665 677788887754
No 383
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=56.83 E-value=5.7 Score=35.56 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.3
Q ss_pred CcEEEEccCCCCchhhh
Q 006272 147 SDLVGRARTGQGKTLAF 163 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~ 163 (652)
+-+.+.+|+|+|||+..
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999853
No 384
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=56.80 E-value=3.5 Score=39.15 Aligned_cols=53 Identities=15% Similarity=0.004 Sum_probs=29.4
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEccCCCCchhhh
Q 006272 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l--~~~dvl~~a~TGsGKTl~~ 163 (652)
...|+++.-.+.....++..-.. .. ....+..+- -.+.+++.+|+|+|||+..
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 34677776666666655543110 00 112222221 1244999999999999743
No 385
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=56.40 E-value=21 Score=26.54 Aligned_cols=68 Identities=7% Similarity=-0.009 Sum_probs=41.9
Q ss_pred EEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCceeee
Q 006272 518 TVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANVSLE 586 (652)
Q Consensus 518 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~ 586 (652)
++++..-....+..++..++.. +| .|..+.+..+ .+++||++.. +.|..++..++ .++.+.+.
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~~-~G-----~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFKD-FP-----SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHTT-ST-----TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-----CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 5666655545566666666554 23 3444555433 3689999988 67777776665 56667777
Q ss_pred eccCC
Q 006272 587 VLKQL 591 (652)
Q Consensus 587 ~~~~l 591 (652)
.+...
T Consensus 77 ~a~~~ 81 (83)
T 3md1_A 77 WAAKL 81 (83)
T ss_dssp ECCCC
T ss_pred ecCcC
Confidence 66543
No 386
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=56.24 E-value=15 Score=38.98 Aligned_cols=73 Identities=21% Similarity=0.310 Sum_probs=45.4
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeC--------CcchHHHHHHh---c--CCCcEEEeCcHHHHHHHHhC
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG--------GAPYHAQEFKL---K--KGIDVVIGTPGRIKDHIERG 255 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~g--------g~~~~~~~~~~---~--~~~~Ilv~Tp~rl~~~l~~~ 255 (652)
++||.|+++..+..+++.|...+....+.+..++| +.+...+...+ . ...+|+|||. +-..
T Consensus 391 k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~------~~~~ 464 (555)
T 3tbk_A 391 KTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS------VADE 464 (555)
T ss_dssp CEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC------CTTC
T ss_pred eEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc------hhhc
Confidence 59999999999999999998865434455555554 44444333322 2 3578999994 2234
Q ss_pred CcCCCCceEEec
Q 006272 256 NIDLSSLKFRVL 267 (652)
Q Consensus 256 ~~~l~~~~~lVi 267 (652)
.+++.++++||.
T Consensus 465 GlDlp~v~~VI~ 476 (555)
T 3tbk_A 465 GIDIAECNLVIL 476 (555)
T ss_dssp CEETTSCSEEEE
T ss_pred CCccccCCEEEE
Confidence 577888888875
No 387
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=56.24 E-value=26 Score=38.55 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=54.7
Q ss_pred EEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchH---HHHHHhc---CCCcEEEeCcHHHHHHHHhCCcCCCCce
Q 006272 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH---AQEFKLK---KGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (652)
Q Consensus 190 ~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~~~---~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~ 263 (652)
.+|+++|+.-+.++++.+... ++.+..++|+.+.. .+..... ...+|+|||. .+ ...+++ +++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~-e~GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AI-GMGLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GG-GSSCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HH-HCCcCc-Ccc
Confidence 477799999898888888773 57889999999877 3344444 4479999994 33 345778 899
Q ss_pred EEecCcchhh
Q 006272 264 FRVLDEADEM 273 (652)
Q Consensus 264 ~lViDEah~~ 273 (652)
+||.-...+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9999887654
No 388
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.13 E-value=31 Score=26.98 Aligned_cols=71 Identities=7% Similarity=-0.138 Sum_probs=43.3
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC------CceeeecCh-hhHHHHHhhcc--CCCceee
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPV-ADLDLFRSGAD--NAANVSL 585 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~------~~a~~dv~~-~~a~~~~~~~~--~~~~i~l 585 (652)
...+|++..-....+..++..++..+ | .|..+.+..+. +++||++.. +.|..++.... .++.+.+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v 87 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTF-G-----EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 87 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGG-S-----CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhc-C-----CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEE
Confidence 44577777655555666776666553 2 34445554442 489999987 66666666433 5556666
Q ss_pred eeccCC
Q 006272 586 EVLKQL 591 (652)
Q Consensus 586 ~~~~~l 591 (652)
..+...
T Consensus 88 ~~a~~~ 93 (103)
T 2cqg_A 88 KLPNSK 93 (103)
T ss_dssp ECCCTT
T ss_pred EecCCC
Confidence 666543
No 389
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=55.94 E-value=6.2 Score=36.48 Aligned_cols=20 Identities=25% Similarity=0.106 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCCCchhhh
Q 006272 144 LDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~~ 163 (652)
..|+-+.+.+|+|+|||+..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46788999999999999843
No 390
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.86 E-value=31 Score=26.79 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=41.2
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC-----CCceeeecCh-hhHHHHHhhcc----CCCcee
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-----GNGAVFDVPV-ADLDLFRSGAD----NAANVS 584 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d-----~~~a~~dv~~-~~a~~~~~~~~----~~~~i~ 584 (652)
...+|++..-....+..++..++.. + +.|.+..+ ..++||++.. +.|..++..++ .++.+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~-~--------g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEK-A--------TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSS-C--------SEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-C--------CEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 4567887765555556666554443 2 22333322 4799999988 77777777666 566677
Q ss_pred eeecc
Q 006272 585 LEVLK 589 (652)
Q Consensus 585 l~~~~ 589 (652)
++.+.
T Consensus 85 v~~a~ 89 (101)
T 2fc9_A 85 LELQG 89 (101)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 77664
No 391
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=55.82 E-value=42 Score=27.00 Aligned_cols=74 Identities=8% Similarity=-0.030 Sum_probs=46.3
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEee--cCCCceeeecCh-hhHHHHHhhcc----CCCceeeee
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALT--ADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEV 587 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~--~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~ 587 (652)
.-.+|++..-....+..++..++... |. .|..+.+. ...+++||++.. +.|+.++..++ .++.+.++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~-G~----~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAREN-SL----ETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHH-TC----CCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh-CC----eeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34577777655556667776666653 31 23334442 345899999987 77888887776 677777777
Q ss_pred ccCCCc
Q 006272 588 LKQLPP 593 (652)
Q Consensus 588 ~~~lp~ 593 (652)
+...|+
T Consensus 102 a~~~p~ 107 (111)
T 2jvr_A 102 DDNPPP 107 (111)
T ss_dssp SCC---
T ss_pred CCCCCC
Confidence 765443
No 392
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=55.81 E-value=17 Score=43.12 Aligned_cols=61 Identities=18% Similarity=0.102 Sum_probs=40.6
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHhCCCCCCcccCCCCCCCeEEEEeccHHHHHHHHHHHHH
Q 006272 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreLa~q~~~~~~~ 209 (652)
..+|.|.-|||||.+...-++..+....... ........-++|+|+=|+.-|..+.+++..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~-~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSA-AFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSS-SCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCccc-ccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4499999999999987777777776421000 000001223699999999888887777754
No 393
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.80 E-value=24 Score=27.61 Aligned_cols=71 Identities=7% Similarity=-0.006 Sum_probs=46.6
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC----CCceeeecCh-hhHHHHHhhcc----CCCcee
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD----GNGAVFDVPV-ADLDLFRSGAD----NAANVS 584 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d----~~~a~~dv~~-~~a~~~~~~~~----~~~~i~ 584 (652)
....+|++..-....+..++..++..+ | .|..+.+..+ ..++||++.. +.|..++..++ .++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQI-G-----PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHH-S-----CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhc-C-----CEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 345688887766556677777777664 2 3444554432 3689999987 67777776665 566677
Q ss_pred eeeccC
Q 006272 585 LEVLKQ 590 (652)
Q Consensus 585 l~~~~~ 590 (652)
+..+..
T Consensus 87 V~~a~~ 92 (103)
T 2cqi_A 87 VNWATT 92 (103)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 777654
No 394
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=55.76 E-value=15 Score=33.05 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=36.0
Q ss_pred CCCeEEEEecchhHHHHHHHhcC---------CCcccccccchHHHHHHHhhhcCCCceEEEEcc
Q 006272 362 SGGRTIIFTETKESASQLADLLP---------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~---------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~ 417 (652)
...++||.++++.-+.++++.+. .+..++|+.........+ ....+|+|+|.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~ 130 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATP 130 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECH
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCH
Confidence 34589999999998888776553 345677877665443322 34678999995
No 395
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=55.57 E-value=32 Score=27.28 Aligned_cols=65 Identities=9% Similarity=0.065 Sum_probs=43.5
Q ss_pred EEEEEecCCCc-cCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeecc
Q 006272 517 VTVVLEAGKPI-YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVLK 589 (652)
Q Consensus 517 ~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~~ 589 (652)
.+|++..-... .+..++..++..+ | .|..+.+. ..++||++.. +.|..++..++ .++.+.++.+.
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~-G-----~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKY-G-----RVAGCSVH--KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGG-S-----CCSEEEEE--TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhC-C-----CeEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 58888765554 6777776666653 3 34445564 3899999987 67777776665 55666666664
No 396
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=55.52 E-value=44 Score=28.30 Aligned_cols=71 Identities=8% Similarity=-0.070 Sum_probs=48.7
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC-CCceeeecCh-hhHHHHHhhcc----CCCceeeee
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-GNGAVFDVPV-ADLDLFRSGAD----NAANVSLEV 587 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d-~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~ 587 (652)
....+|++..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|..++..++ .++.+.++.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYY-G-----PLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHH-S-----CEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhh-C-----CEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345688888766656677777777663 2 4555666655 6899999988 66777776665 566777777
Q ss_pred ccC
Q 006272 588 LKQ 590 (652)
Q Consensus 588 ~~~ 590 (652)
+..
T Consensus 145 a~~ 147 (150)
T 2i2y_A 145 SNG 147 (150)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 397
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=55.51 E-value=4.2 Score=35.93 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCCchhhhH
Q 006272 145 DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~ 164 (652)
.|.-+.+++|+|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45668899999999998554
No 398
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.48 E-value=21 Score=28.03 Aligned_cols=71 Identities=7% Similarity=-0.095 Sum_probs=46.1
Q ss_pred EEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCceee
Q 006272 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANVSL 585 (652)
Q Consensus 517 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l 585 (652)
.+|++..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|..++..++ .++.+.+
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~-G-----~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEV-G-----PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTT-S-----CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhc-C-----CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 466666655555666776666653 3 3444555433 3689999988 77777777666 6777888
Q ss_pred eeccCCCc
Q 006272 586 EVLKQLPP 593 (652)
Q Consensus 586 ~~~~~lp~ 593 (652)
..+.....
T Consensus 83 ~~a~~~~~ 90 (104)
T 1p1t_A 83 DNAASEKN 90 (104)
T ss_dssp EETTCTTH
T ss_pred EeCCCccc
Confidence 87765443
No 399
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=55.31 E-value=10 Score=38.16 Aligned_cols=28 Identities=18% Similarity=0.019 Sum_probs=20.7
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
.++-+++.+++|+|||...+..+.+...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~ 89 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR 89 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999865554444443
No 400
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=55.25 E-value=5.3 Score=35.97 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCchhh
Q 006272 147 SDLVGRARTGQGKTLA 162 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~ 162 (652)
+-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999984
No 401
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.14 E-value=36 Score=26.36 Aligned_cols=69 Identities=9% Similarity=-0.004 Sum_probs=44.2
Q ss_pred cEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC-----CceeeecCh-hhHHHHHhhcc----CCCceee
Q 006272 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG-----NGAVFDVPV-ADLDLFRSGAD----NAANVSL 585 (652)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~-----~~a~~dv~~-~~a~~~~~~~~----~~~~i~l 585 (652)
..+|++..-....+..++..++..+ | .|..+.+..+. +++||++.. +.|..++..++ .++.+.+
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAH-G-----TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTT-S-----CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC-C-----CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4567777655555666776666553 2 34445554433 689999988 67777776655 6667777
Q ss_pred eeccC
Q 006272 586 EVLKQ 590 (652)
Q Consensus 586 ~~~~~ 590 (652)
..+..
T Consensus 91 ~~a~~ 95 (100)
T 2do4_A 91 AISNS 95 (100)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 77653
No 402
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=55.06 E-value=6.4 Score=43.66 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=49.4
Q ss_pred CeEEEEeccHHHHHHHHHHHHHH--hcCCCceEEEEeCC--------cchHHHHHHh----cCCCcEEEeCcHHHHHHHH
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVY--GGAVGLTSCCLYGG--------APYHAQEFKL----KKGIDVVIGTPGRIKDHIE 253 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~--~~~~~~~~~~~~gg--------~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~ 253 (652)
.++||.++++..+..+++.|... ....++.+..++|+ .+...+...+ ....+|+|+|. +.
T Consensus 401 ~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~~ 474 (699)
T 4gl2_A 401 ARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------VA 474 (699)
T ss_dssp CCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------SC
T ss_pred CcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------cc
Confidence 35999999999999999988764 12236888889988 6665555444 24578999994 23
Q ss_pred hCCcCCCCceEEec
Q 006272 254 RGNIDLSSLKFRVL 267 (652)
Q Consensus 254 ~~~~~l~~~~~lVi 267 (652)
...+++.++++||.
T Consensus 475 ~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 475 EEGLDIKECNIVIR 488 (699)
T ss_dssp CTTSCCCSCCCCEE
T ss_pred ccCCccccCCEEEE
Confidence 34678889998873
No 403
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=55.02 E-value=9.9 Score=38.09 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=20.4
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
.|.-+++.+++|+|||...+..+.....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~ 87 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA 87 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4677999999999999865544444443
No 404
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=54.92 E-value=23 Score=28.20 Aligned_cols=70 Identities=11% Similarity=0.014 Sum_probs=43.8
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc--------
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD-------- 578 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~-------- 578 (652)
....+|+|..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|..++..++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQF-G-----DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTT-S-----CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-C-----CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 345577877655556677776766653 3 3444555432 4689999987 67777776553
Q ss_pred --CCCceeeeecc
Q 006272 579 --NAANVSLEVLK 589 (652)
Q Consensus 579 --~~~~i~l~~~~ 589 (652)
.++.+.+..+.
T Consensus 87 ~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 87 KLDGRQLKVDLAV 99 (111)
T ss_dssp ESSSCEEEEECCC
T ss_pred EEcCEEEEEEECC
Confidence 45556666654
No 405
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.64 E-value=15 Score=28.01 Aligned_cols=69 Identities=10% Similarity=-0.003 Sum_probs=43.8
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC-----CCceeeecCh-hhHHHHHhhcc----CCCcee
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-----GNGAVFDVPV-ADLDLFRSGAD----NAANVS 584 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d-----~~~a~~dv~~-~~a~~~~~~~~----~~~~i~ 584 (652)
...++++..-....+..++..++... . |..+.+..+ .+++||++.. +.|..++. ++ .++.+.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~------i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~ 80 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-K------PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIE 80 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-C------CSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-C------ceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEE
Confidence 34577777655556666776666653 2 334444433 2589999988 67777776 66 566677
Q ss_pred eeeccCC
Q 006272 585 LEVLKQL 591 (652)
Q Consensus 585 l~~~~~l 591 (652)
+..+...
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 7766544
No 406
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=54.50 E-value=9.7 Score=49.33 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHCCCCCChHHH-HHHH---HHHhcCCcEEEEccCCCCchhhhHH
Q 006272 116 ISVPLREKLKSKGIESLFPIQ-AMTF---DMVLDGSDLVGRARTGQGKTLAFVL 165 (652)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q-~~~i---~~~l~~~dvl~~a~TGsGKTl~~~l 165 (652)
|...+.+.+.+.|+. +.|.| .+++ ..+...+-++++||||||||.++-.
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 456677778888885 44444 3444 3344667799999999999998764
No 407
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=54.41 E-value=8.5 Score=30.37 Aligned_cols=67 Identities=7% Similarity=0.035 Sum_probs=44.2
Q ss_pred EEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC------CceeeecCh-hhHHHHHhhcc----CCCceee
Q 006272 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPV-ADLDLFRSGAD----NAANVSL 585 (652)
Q Consensus 517 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~------~~a~~dv~~-~~a~~~~~~~~----~~~~i~l 585 (652)
++|++..-....+..++..++..+ | .|..+.+..|. +++||++.. +.|..++..++ .++.+.+
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~-G-----~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V 93 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSI-G-----EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 93 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTT-S-----CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 578888766666777776666653 3 34445554332 479999987 77777777665 6666777
Q ss_pred eecc
Q 006272 586 EVLK 589 (652)
Q Consensus 586 ~~~~ 589 (652)
+.++
T Consensus 94 ~~Ak 97 (99)
T 4fxv_A 94 SYAR 97 (99)
T ss_dssp EECC
T ss_pred EEee
Confidence 6664
No 408
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=54.23 E-value=11 Score=29.71 Aligned_cols=67 Identities=7% Similarity=0.023 Sum_probs=42.1
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC------CceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~------~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
...+|++..-....+..++..++..+ + |..+.+..+. +++||++.. +.|..++ .++ .++.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~-g------i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDL-S------IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTS-C------EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhC-C------ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 45688887655555666666555553 2 4445554442 489999988 6666666 565 55666
Q ss_pred eeeecc
Q 006272 584 SLEVLK 589 (652)
Q Consensus 584 ~l~~~~ 589 (652)
.+..+.
T Consensus 86 ~V~~a~ 91 (103)
T 2dng_A 86 RVDIAE 91 (103)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 666664
No 409
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=54.19 E-value=5.5 Score=35.63 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCCchhhhH
Q 006272 145 DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~ 164 (652)
.+..+++.+++|||||++.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45679999999999998543
No 410
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=54.06 E-value=17 Score=34.13 Aligned_cols=51 Identities=20% Similarity=0.126 Sum_probs=36.5
Q ss_pred CCeEEEEecchhHHHHHHHhcC--------CCcccccccchHHHHHHHhhhcCCCceEEEEcc
Q 006272 363 GGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (652)
Q Consensus 363 ~~~~iVF~~s~~~~~~l~~~l~--------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~ 417 (652)
..++||.|+++.-+.++++.+. .+..++|+.........+ ....+|+|+|.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp 158 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATP 158 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECH
Confidence 4689999999999988877664 345677877665544333 24578999995
No 411
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=54.04 E-value=13 Score=34.42 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=37.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcC---------CCcccccccchHHHHHHHhhhcCCCceEEEEcc
Q 006272 362 SGGRTIIFTETKESASQLADLLP---------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~---------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~ 417 (652)
...++||.|+++.-+.++++.+. .+..++|+.....+...+ ...+|+|+|.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp 150 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSP 150 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECH
Confidence 35689999999998888776654 345678888776655443 2478999985
No 412
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=54.04 E-value=5.8 Score=39.22 Aligned_cols=16 Identities=25% Similarity=0.079 Sum_probs=13.9
Q ss_pred cEEEEccCCCCchhhh
Q 006272 148 DLVGRARTGQGKTLAF 163 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~ 163 (652)
-+++++|||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999743
No 413
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.89 E-value=30 Score=27.08 Aligned_cols=59 Identities=7% Similarity=0.095 Sum_probs=37.4
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC-----CCceeeecCh-hhHHHHHhhcc
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-----GNGAVFDVPV-ADLDLFRSGAD 578 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d-----~~~a~~dv~~-~~a~~~~~~~~ 578 (652)
...+|++..-....+..++..++...+|. |..+.+..+ .+++||++.. +.|..++..++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~-----v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 72 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPS-----CRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQ 72 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTT-----EEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCC-----eEEEEEEECCCCCccceEEEEECCHHHHHHHHHHcc
Confidence 34577777655556677777777663342 334555433 3689999988 67777776655
No 414
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=53.85 E-value=5.4 Score=35.61 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhhh
Q 006272 146 GSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~ 163 (652)
+.-+++.++.|||||+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999854
No 415
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=53.72 E-value=7.7 Score=39.57 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=45.3
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHh----cCCCcEEEeCcHHHHHHHHhCCcCCCCceE
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~ 264 (652)
++||.++++.-+..+++.+.. .++.+..++|+.+...+...+ ....+|+|+|. +....+++.++++
T Consensus 282 ~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~v~~ 351 (414)
T 3eiq_A 282 QAVIFINTRRKVDWLTEKMHA----RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD------LLARGIDVQQVSL 351 (414)
T ss_dssp SCEEECSCHHHHHHHHHHHHT----TTCCCEEC---CHHHHHHHHHHHHSCC---CEEECS------SCC--CCGGGCSC
T ss_pred cEEEEeCCHHHHHHHHHHHHh----cCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC------ccccCCCccCCCE
Confidence 589999999999999888865 357788888888766554433 23578999994 2223567777888
Q ss_pred EecC
Q 006272 265 RVLD 268 (652)
Q Consensus 265 lViD 268 (652)
||.-
T Consensus 352 Vi~~ 355 (414)
T 3eiq_A 352 VINY 355 (414)
T ss_dssp EEES
T ss_pred EEEe
Confidence 7753
No 416
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=53.69 E-value=20 Score=32.73 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=29.8
Q ss_pred CCCeEEEEecchhHHHHHHHhcC--------CCcccccccchHHHHHHHhhhcCCCceEEEEcc
Q 006272 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~--------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~ 417 (652)
...++||.++++.-+.++++.+. .+..++|+.....+...+ . ..+|+|+|.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~iiv~Tp 139 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIVVGTP 139 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEEEECH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEEEECH
Confidence 45689999999999888877554 345667776654433322 2 267888884
No 417
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=53.68 E-value=7.1 Score=34.23 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchhhh
Q 006272 146 GSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~ 163 (652)
+..+++.++.|||||+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999843
No 418
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.59 E-value=5.2 Score=40.86 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=29.4
Q ss_pred CcccccCCCHHHHHHHHHCCCCCChHHHH-HHHHH--HhcCCcEEEEccCCCCchhhh
Q 006272 109 NAVSRFRISVPLREKLKSKGIESLFPIQA-MTFDM--VLDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~--~l~~~dvl~~a~TGsGKTl~~ 163 (652)
-.|++.+=-+...+.|.+.= ..|... +.+.. +..-+-+|+.+|+|+|||+.+
T Consensus 145 v~~~dIgGl~~~k~~l~e~v---~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVI---ELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHT---HHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHH---HHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 45777765555555555431 112111 11111 112378999999999999853
No 419
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.59 E-value=30 Score=27.62 Aligned_cols=68 Identities=9% Similarity=-0.146 Sum_probs=43.3
Q ss_pred cEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC-----CCceeeecCh-hhHHHHHhhcc----CCCceee
Q 006272 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-----GNGAVFDVPV-ADLDLFRSGAD----NAANVSL 585 (652)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d-----~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l 585 (652)
..+|+|..-....+..++..++..+ + .|..+.+..+ ..++||++.. +.|..++..++ .++.+.+
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~-G-----~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMA-G-----VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTT-S-----CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 4577777655555666776666553 3 3444555443 2589999988 67777776665 5666777
Q ss_pred eecc
Q 006272 586 EVLK 589 (652)
Q Consensus 586 ~~~~ 589 (652)
..+.
T Consensus 89 ~~a~ 92 (114)
T 2do0_A 89 KMDE 92 (114)
T ss_dssp EECS
T ss_pred EEcc
Confidence 7664
No 420
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=53.26 E-value=38 Score=28.00 Aligned_cols=77 Identities=6% Similarity=0.050 Sum_probs=46.1
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEee---cCCCceeeecCh-hhHHHHHhhcc----CCCceeee
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALT---ADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLE 586 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~---~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~ 586 (652)
...+|++..-....+..++...|...|..- ..|..+.+. ..++++||++.. +.|..++..++ .++.+.+.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~--G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQ--GDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccC--CCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 345788876555445555443333322111 133334443 234799999987 77888887776 67788888
Q ss_pred eccCCCc
Q 006272 587 VLKQLPP 593 (652)
Q Consensus 587 ~~~~lp~ 593 (652)
.++..+.
T Consensus 106 ~a~~~~~ 112 (127)
T 2a3j_A 106 FSETPQS 112 (127)
T ss_dssp ECCCCCH
T ss_pred EccCcch
Confidence 8876544
No 421
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=53.23 E-value=8.9 Score=42.46 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=42.5
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeC--------CcchHHHHHHh---c--CCCcEEEeCcHHHHHHHHh
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG--------GAPYHAQEFKL---K--KGIDVVIGTPGRIKDHIER 254 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~g--------g~~~~~~~~~~---~--~~~~Ilv~Tp~rl~~~l~~ 254 (652)
.++||.|+++.-+..+++.+...+....+++..++| +.+...+...+ . ...+|+|+|. +..
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~------v~~ 472 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS------VAD 472 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE------SSC
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec------hhh
Confidence 359999999999999999998865434467777755 55544444333 2 3578999993 223
Q ss_pred CCcCCCCceEEec
Q 006272 255 GNIDLSSLKFRVL 267 (652)
Q Consensus 255 ~~~~l~~~~~lVi 267 (652)
..+++.++++||.
T Consensus 473 ~GiDip~v~~VI~ 485 (696)
T 2ykg_A 473 EGIDIAQCNLVIL 485 (696)
T ss_dssp CC---CCCSEEEE
T ss_pred cCCcCccCCEEEE
Confidence 4578888998885
No 422
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=53.19 E-value=11 Score=32.14 Aligned_cols=54 Identities=9% Similarity=-0.021 Sum_probs=30.4
Q ss_pred EEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC-----CCceeeecCh-hhHHHHHhhcc
Q 006272 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-----GNGAVFDVPV-ADLDLFRSGAD 578 (652)
Q Consensus 517 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d-----~~~a~~dv~~-~~a~~~~~~~~ 578 (652)
.+|++..-....+..+|..++.. ++.. .+.+..| ..++||++.. ++|+.++ .++
T Consensus 47 ~~lfV~nLp~~~te~dL~~~F~~-~Gi~------~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~ 106 (139)
T 2hgn_A 47 HCVHMRGLPYKATENDIYNFFSP-LNPV------RVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKD 106 (139)
T ss_dssp CCEECCSCCTTCCHHHHHHHHCS-CCCS------EEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCe------EEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhC
Confidence 35665544434566667655554 3321 3444322 3689999988 5666665 443
No 423
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=53.12 E-value=5.3 Score=35.27 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchhhh
Q 006272 148 DLVGRARTGQGKTLAF 163 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~ 163 (652)
-+++.+++|||||+..
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999854
No 424
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=53.08 E-value=7.1 Score=35.64 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=16.9
Q ss_pred HHhcCCcEEEEccCCCCchhhh
Q 006272 142 MVLDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 142 ~~l~~~dvl~~a~TGsGKTl~~ 163 (652)
.+..|.-+.+.+|+|||||+.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4667888999999999999844
No 425
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=52.94 E-value=4.5 Score=39.06 Aligned_cols=54 Identities=15% Similarity=-0.003 Sum_probs=30.9
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEccCCCCchhhh
Q 006272 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l--~~~dvl~~a~TGsGKTl~~ 163 (652)
....|+++.-.+.+...+...-.. .. ....+..+- -.+.+++.+|+|+|||+..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 345677887777776666543110 00 012222221 1234999999999999743
No 426
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=52.92 E-value=19 Score=34.17 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=44.5
Q ss_pred CCCeEEEEecchhHHHHHHHhcC--------CCcccccccchHHHHHHHhhhcCCCceEEEEcc-----ccc--cCCCCC
Q 006272 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-----VAA--RGLDIN 426 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~--------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~--~Gldi~ 426 (652)
.+.++||.++|+.-+.+++..+. .+..++|+.........+ ..+ .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 45789999999999988877665 345567777655444333 233 78999994 111 235666
Q ss_pred CccEEEE
Q 006272 427 DVQLIIQ 433 (652)
Q Consensus 427 ~v~~VI~ 433 (652)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 6776664
No 427
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=52.85 E-value=5.9 Score=35.96 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCCchhhhH
Q 006272 145 DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~ 164 (652)
.+.-+++.++.|||||+..-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46789999999999998543
No 428
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.49 E-value=50 Score=25.95 Aligned_cols=74 Identities=4% Similarity=-0.053 Sum_probs=47.4
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEee-------cCCCceeeecCh-hhHHHHHhhcc------CC
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALT-------ADGNGAVFDVPV-ADLDLFRSGAD------NA 580 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~-------~d~~~a~~dv~~-~~a~~~~~~~~------~~ 580 (652)
...+|++..-....+..++..++..+-. .|..+.+. ...+++||++.. +.|..++..++ .+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~-----~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTE-----GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHST-----TEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcC-----CceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 4567888766555667777777766422 13334443 334799999988 67777777663 45
Q ss_pred CceeeeeccCCCc
Q 006272 581 ANVSLEVLKQLPP 593 (652)
Q Consensus 581 ~~i~l~~~~~lp~ 593 (652)
+.+.++.+...+.
T Consensus 82 ~~l~V~~a~~~~~ 94 (109)
T 2dis_A 82 HQIAVDWAEPEID 94 (109)
T ss_dssp BCCEEEESCSSCS
T ss_pred CeEEEEEcCCCCC
Confidence 6677777765443
No 429
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=52.35 E-value=5.2 Score=39.64 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=28.4
Q ss_pred CcccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-----cCCcEEEEccCCCCchhhh
Q 006272 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL-----DGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l-----~~~dvl~~a~TGsGKTl~~ 163 (652)
..|+++.--..+.+.|...- ..|.+ .|.+. ..+.+++.+|+|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v---~~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAV---ILPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHH---HHHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHH---HHHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 45777766666666654320 00111 01221 2367999999999999854
No 430
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.32 E-value=67 Score=24.60 Aligned_cols=73 Identities=12% Similarity=-0.005 Sum_probs=46.7
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeec
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVL 588 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~ 588 (652)
+...+|++..-....+..++..++..+ |.... .+......+++||++.. +.|..++..++ .++.+.++.+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~-G~v~~----~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALREL-GSVPL----RLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHT-TCCCS----EEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhc-CCEEE----EEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 345688887665556677777777663 33211 22223445899999988 66777776655 6677777777
Q ss_pred cCC
Q 006272 589 KQL 591 (652)
Q Consensus 589 ~~l 591 (652)
...
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 431
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.26 E-value=5.9 Score=41.15 Aligned_cols=52 Identities=21% Similarity=0.152 Sum_probs=30.1
Q ss_pred CcccccCCCHHHHHHHHHCCCCCChHHH-HHHHHHH--hcCCcEEEEccCCCCchhhh
Q 006272 109 NAVSRFRISVPLREKLKSKGIESLFPIQ-AMTFDMV--LDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~~--l~~~dvl~~a~TGsGKTl~~ 163 (652)
-.|++.+--..+.+.|.+.=. .|.. -+.+..+ ..-+-+|+.+|+|+|||+.+
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 357777666666666655311 1111 1112111 23478999999999999853
No 432
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=52.22 E-value=15 Score=39.18 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=20.4
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHhC
Q 006272 147 SDLVGRARTGQGKTLAFVLPILESLTN 173 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~lpil~~l~~ 173 (652)
.++++.+.||||||.+....++..+..
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~ 241 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFK 241 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHh
Confidence 579999999999998765555554443
No 433
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=52.13 E-value=5.2 Score=39.04 Aligned_cols=17 Identities=29% Similarity=0.196 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCchhhh
Q 006272 147 SDLVGRARTGQGKTLAF 163 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~ 163 (652)
+-+++.+|+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999753
No 434
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=51.72 E-value=36 Score=37.72 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=52.9
Q ss_pred eEEEEeccHHHHHHHHHHHHHHhcC--------------------------------CCceEEEEeCCcchHHHHHHhc-
Q 006272 189 SVLVLLPTRELAKQVHEDFDVYGGA--------------------------------VGLTSCCLYGGAPYHAQEFKLK- 235 (652)
Q Consensus 189 ~~lil~PtreLa~q~~~~~~~~~~~--------------------------------~~~~~~~~~gg~~~~~~~~~~~- 235 (652)
++||.+|++.-+..++..+...... ....+..++++.+...+.....
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 5999999999999999888764321 0134788999988776654442
Q ss_pred ---CCCcEEEeCcHHHHHHHHhCCcCCCCceEEecC
Q 006272 236 ---KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (652)
Q Consensus 236 ---~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lViD 268 (652)
....|+|||. .+. ..+++..+.+||.+
T Consensus 334 f~~g~~~vlvaT~-----~l~-~Gidip~~~~VI~~ 363 (715)
T 2va8_A 334 FRQRKIKVIVATP-----TLA-AGVNLPARTVIIGD 363 (715)
T ss_dssp HHTTCSCEEEECG-----GGG-GSSCCCBSEEEECC
T ss_pred HHcCCCeEEEECh-----HHh-cccCCCceEEEEeC
Confidence 4689999993 222 35678888886644
No 435
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=51.69 E-value=34 Score=26.82 Aligned_cols=71 Identities=8% Similarity=0.038 Sum_probs=46.2
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
.-.+|++..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|..++..++ .++.+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEY-G-----EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGG-S-----CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc-C-----CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 34678887665556677776666653 2 3444555433 2589999988 66777776655 66777
Q ss_pred eeeeccCC
Q 006272 584 SLEVLKQL 591 (652)
Q Consensus 584 ~l~~~~~l 591 (652)
.+..+...
T Consensus 96 ~V~~a~~~ 103 (106)
T 1p27_B 96 SVDWCFVR 103 (106)
T ss_dssp EEEESEES
T ss_pred EEEeecCC
Confidence 77777544
No 436
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=51.63 E-value=15 Score=47.10 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHCCCCCChHHH-HHHH---HHHhcCCcEEEEccCCCCchhhhHHH
Q 006272 116 ISVPLREKLKSKGIESLFPIQ-AMTF---DMVLDGSDLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q-~~~i---~~~l~~~dvl~~a~TGsGKTl~~~lp 166 (652)
+...+.+.+.+.|+. +++.+ .+++ ..+...+-+++.||||||||.++-..
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~L 943 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTV 943 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHH
Confidence 445567777788885 45544 3333 44556788999999999999987543
No 437
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=51.56 E-value=6.7 Score=39.04 Aligned_cols=16 Identities=31% Similarity=0.086 Sum_probs=13.8
Q ss_pred cEEEEccCCCCchhhh
Q 006272 148 DLVGRARTGQGKTLAF 163 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~ 163 (652)
-+++++|||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999743
No 438
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=51.37 E-value=41 Score=26.34 Aligned_cols=59 Identities=8% Similarity=-0.010 Sum_probs=38.6
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD 578 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~ 578 (652)
....+|++..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|..++..++
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEF-G-----KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH 76 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHH-S-----CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 345688887665556677777777664 2 3444555443 3689999987 67777776554
No 439
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.32 E-value=17 Score=29.33 Aligned_cols=67 Identities=7% Similarity=-0.059 Sum_probs=40.8
Q ss_pred cEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCcee
Q 006272 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANVS 584 (652)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i~ 584 (652)
..+|++..-....+..++..++.. +| .|..+.+..+ .+++||++.. +.|..++.. + .++.+.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~-~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 99 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQ-WG-----KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVE 99 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTS-SC-----CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cC-----CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEE
Confidence 357887765555666677666654 33 3445555544 2599999988 566666654 3 455555
Q ss_pred eeecc
Q 006272 585 LEVLK 589 (652)
Q Consensus 585 l~~~~ 589 (652)
+..+.
T Consensus 100 V~~a~ 104 (116)
T 1x4b_A 100 PKRAV 104 (116)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 55554
No 440
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=51.17 E-value=5.8 Score=34.65 Aligned_cols=17 Identities=6% Similarity=-0.208 Sum_probs=14.2
Q ss_pred cEEEEccCCCCchhhhH
Q 006272 148 DLVGRARTGQGKTLAFV 164 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~ 164 (652)
-+++.|+.|||||+..-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 441
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=50.85 E-value=7 Score=38.18 Aligned_cols=18 Identities=28% Similarity=0.165 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCchhhhH
Q 006272 147 SDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~ 164 (652)
..+++.+|+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 369999999999998543
No 442
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=50.78 E-value=8.9 Score=38.52 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=16.4
Q ss_pred cCCc--EEEEccCCCCchhhhH
Q 006272 145 DGSD--LVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~d--vl~~a~TGsGKTl~~~ 164 (652)
.|.+ +++-++||||||.+..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 4776 6899999999998653
No 443
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=50.43 E-value=5.7 Score=35.01 Aligned_cols=19 Identities=21% Similarity=0.100 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
+.-+++.++.|||||+..-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 5568999999999998543
No 444
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.22 E-value=6.1 Score=40.91 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCchhhh
Q 006272 146 GSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~ 163 (652)
-+-+|+.+|+|||||+.+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 377999999999999854
No 445
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.97 E-value=30 Score=26.07 Aligned_cols=51 Identities=8% Similarity=-0.123 Sum_probs=30.5
Q ss_pred cEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC-CCceeeecCh-hhHHH
Q 006272 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-GNGAVFDVPV-ADLDL 572 (652)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d-~~~a~~dv~~-~~a~~ 572 (652)
..+|++..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|+.
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~-G-----~i~~v~i~~~~~g~afV~f~~~~~a~~ 57 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQY-G-----DVMDVFIPKPFRAFAFVTFADDQIAQS 57 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTT-S-----CCCEEECCSSCCSCCEEECSCHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHc-C-----CeeEEEEecCCCCEEEEEECCHHHHHH
Confidence 3577776655455566665555442 2 3445555433 5799999988 44443
No 446
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=49.84 E-value=47 Score=25.65 Aligned_cols=70 Identities=6% Similarity=-0.026 Sum_probs=45.6
Q ss_pred cCCCcEEEEEecCCC-ccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceee
Q 006272 512 SLEDHVTVVLEAGKP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSL 585 (652)
Q Consensus 512 ~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l 585 (652)
..+...++++..-.. ..+..++..++..+ | .|..+.+.. +++||++.. +.|..++..++ .++.+.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~-G-----~v~~v~i~~--g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPY-G-----HIMQINIKN--AFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGG-S-----CEEEEEECS--SEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhc-C-----CEEEEEEeC--CEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 334556888877664 56677776666653 2 344455543 799999987 67777776665 5666666
Q ss_pred eecc
Q 006272 586 EVLK 589 (652)
Q Consensus 586 ~~~~ 589 (652)
+.++
T Consensus 90 ~~a~ 93 (97)
T 2xnq_A 90 EVSS 93 (97)
T ss_dssp EECC
T ss_pred EecC
Confidence 6664
No 447
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=49.83 E-value=9.3 Score=36.23 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=17.8
Q ss_pred hcCCcEEEEccCCCCchhhhH
Q 006272 144 LDGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~~~ 164 (652)
+.++.+++.++.|||||+..-
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 348999999999999998543
No 448
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=49.63 E-value=8.6 Score=35.61 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=16.5
Q ss_pred HhcCCcEEEEccCCCCchhhh
Q 006272 143 VLDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~ 163 (652)
.-.|+-+++.+|.|+|||+.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 346778999999999999854
No 449
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=49.59 E-value=7.3 Score=35.64 Aligned_cols=22 Identities=18% Similarity=-0.009 Sum_probs=17.3
Q ss_pred cCCcEEEEccCCCCchhhhHHH
Q 006272 145 DGSDLVGRARTGQGKTLAFVLP 166 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lp 166 (652)
.|.-+++.+++|+|||+.....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l 40 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQT 40 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999754443
No 450
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=49.53 E-value=26 Score=30.47 Aligned_cols=72 Identities=6% Similarity=-0.039 Sum_probs=46.6
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
...+|+|..-....+..+|..++..+ | .|..+.+..+ .+++||++.. +.|..++..++ .+..+
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~-G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDY-G-----EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGG-S-----CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcC-C-----CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34578887666556667776666653 2 3445665544 2689999988 67777776665 56667
Q ss_pred eeeeccCCC
Q 006272 584 SLEVLKQLP 592 (652)
Q Consensus 584 ~l~~~~~lp 592 (652)
.+..+...+
T Consensus 145 ~V~~a~~~~ 153 (165)
T 1rk8_A 145 QVDWCFVKG 153 (165)
T ss_dssp EEEESEECC
T ss_pred EEEEecCCC
Confidence 777775443
No 451
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=49.52 E-value=22 Score=27.44 Aligned_cols=71 Identities=8% Similarity=-0.104 Sum_probs=45.7
Q ss_pred EEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCceeee
Q 006272 518 TVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANVSLE 586 (652)
Q Consensus 518 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~ 586 (652)
++++..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|..++..++ .++.+.+.
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 77 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNV-G-----PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 77 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTT-S-----CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHhc-C-----CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 56666544445666776666653 2 3444555443 4689999988 67777776655 66778888
Q ss_pred eccCCCcc
Q 006272 587 VLKQLPPL 594 (652)
Q Consensus 587 ~~~~lp~~ 594 (652)
.+...+..
T Consensus 78 ~a~~~~~~ 85 (96)
T 2x1f_A 78 YSSNSDIS 85 (96)
T ss_dssp ECSCSSGG
T ss_pred EcCCCCCC
Confidence 88765543
No 452
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=49.41 E-value=7.5 Score=36.18 Aligned_cols=20 Identities=35% Similarity=0.240 Sum_probs=12.7
Q ss_pred hcCCcEEEEccCCCCchhhh
Q 006272 144 LDGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 144 l~~~dvl~~a~TGsGKTl~~ 163 (652)
..|.-+.+.+|+|||||+..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777899999999999854
No 453
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=49.33 E-value=7.2 Score=39.76 Aligned_cols=16 Identities=31% Similarity=0.248 Sum_probs=13.4
Q ss_pred cEEEEccCCCCchhhh
Q 006272 148 DLVGRARTGQGKTLAF 163 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~ 163 (652)
-+++.+|||||||...
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 4789999999999743
No 454
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.11 E-value=27 Score=27.39 Aligned_cols=67 Identities=10% Similarity=-0.009 Sum_probs=42.1
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC-------CCceeeecCh-hhHHHHHhhcc----CCCc
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-------GNGAVFDVPV-ADLDLFRSGAD----NAAN 582 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d-------~~~a~~dv~~-~~a~~~~~~~~----~~~~ 582 (652)
...+|++..-....+..++..++..+ + |..+.+..+ ..++||++.. +.|..++ .++ .++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G------i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGL-N------ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTS-C------EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHC-C------ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 44688887655555666665555542 3 334554433 3589999988 6777777 665 5566
Q ss_pred eeeeecc
Q 006272 583 VSLEVLK 589 (652)
Q Consensus 583 i~l~~~~ 589 (652)
+.+..+.
T Consensus 86 l~V~~a~ 92 (104)
T 1wi8_A 86 IRVDVAD 92 (104)
T ss_dssp CEEEECC
T ss_pred EEEEEcc
Confidence 6666664
No 455
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=48.91 E-value=1.1e+02 Score=30.33 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=14.5
Q ss_pred cEEEEccCCCCchhhhH
Q 006272 148 DLVGRARTGQGKTLAFV 164 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~ 164 (652)
.+++++++|+|||..+.
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999998554
No 456
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=48.45 E-value=12 Score=39.10 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=26.8
Q ss_pred CCceEEecCcchhhhhcCcHHHHHHHHHhccCCCCceEEEEc
Q 006272 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301 (652)
Q Consensus 260 ~~~~~lViDEah~~l~~gf~~~~~~i~~~~~~~~~~q~l~~S 301 (652)
..+++||||||++| |..+......++..+ ..|+|+.+
T Consensus 413 ~~~rlvvlDEA~km-D~~~~~~~~~l~~~l----glQliiat 449 (483)
T 3euj_A 413 LPCRLLFLDQAARL-DAMSINTLFELCERL----DMQLLIAA 449 (483)
T ss_dssp CCCCEEEESSGGGS-CHHHHHHHHHHHHHT----TCEEEEEE
T ss_pred CceeEEEEeccccC-CHHHHHHHHHHHHHc----CCEEEEEC
Confidence 57999999999666 555566666666666 67988643
No 457
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=48.32 E-value=18 Score=33.50 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=19.0
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHhC
Q 006272 148 DLVGRARTGQGKTLAFVLPILESLTN 173 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~lpil~~l~~ 173 (652)
.+++.++.|+|||.+.+--+......
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 58999999999998765544444433
No 458
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=48.18 E-value=17 Score=27.17 Aligned_cols=68 Identities=6% Similarity=0.035 Sum_probs=41.6
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
...++++..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|..++..++ .++.+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 79 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPF-G-----DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 79 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGG-S-----CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhcc-C-----CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34577777666556667776666653 2 3444444322 3689999987 67777776665 45555
Q ss_pred eeeec
Q 006272 584 SLEVL 588 (652)
Q Consensus 584 ~l~~~ 588 (652)
.++.+
T Consensus 80 ~v~~a 84 (85)
T 3mdf_A 80 RVNLA 84 (85)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 55544
No 459
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=48.11 E-value=7 Score=40.88 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
++.+++.+|+|+|||+.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4689999999999998543
No 460
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=48.11 E-value=9.1 Score=38.05 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhhh
Q 006272 146 GSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~ 163 (652)
...+++.||+|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999754
No 461
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=48.07 E-value=7.1 Score=34.93 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCchhhhH
Q 006272 147 SDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~ 164 (652)
.-+++.+|+|||||+..-
T Consensus 3 ~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 347899999999998543
No 462
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=47.88 E-value=18 Score=29.18 Aligned_cols=70 Identities=7% Similarity=0.030 Sum_probs=45.5
Q ss_pred cEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC----CCceeeecCh-hhHHHHHhhcc----CCCceeee
Q 006272 516 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD----GNGAVFDVPV-ADLDLFRSGAD----NAANVSLE 586 (652)
Q Consensus 516 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d----~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~ 586 (652)
..+|++..-....+..++..++..+ | .|..+.+..| ++++||++.. +.|..++..++ .++.+.+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~-G-----~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~ 78 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAF-G-----NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 78 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG-S-----CEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhcc-C-----CEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4578888766666677776666653 3 3334444433 2589999988 77777777665 66677777
Q ss_pred eccCC
Q 006272 587 VLKQL 591 (652)
Q Consensus 587 ~~~~l 591 (652)
.+...
T Consensus 79 ~a~~~ 83 (115)
T 4f25_A 79 RFKSR 83 (115)
T ss_dssp ESSCC
T ss_pred ECCCc
Confidence 76543
No 463
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=47.01 E-value=24 Score=27.33 Aligned_cols=74 Identities=4% Similarity=-0.085 Sum_probs=43.2
Q ss_pred CCCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeec---CCCceeeecCh-hhHHHHHhhcc----CCCcee
Q 006272 513 LEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTA---DGNGAVFDVPV-ADLDLFRSGAD----NAANVS 584 (652)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~---d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~ 584 (652)
.+...+|++..-....+..++..++..+ +... .+.-+.-.. ...++||++.. +.|..++..++ .++.+.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-G~v~--~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGY-QVIP--GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTS-CCCT--TTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHc-CCcc--ceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3455788887665556666776665553 3321 111111111 12689999987 67777777766 566666
Q ss_pred eeecc
Q 006272 585 LEVLK 589 (652)
Q Consensus 585 l~~~~ 589 (652)
++.+.
T Consensus 89 V~~a~ 93 (98)
T 2cqp_A 89 LVLGS 93 (98)
T ss_dssp EEESS
T ss_pred EEEcC
Confidence 66664
No 464
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=47.00 E-value=7.7 Score=33.37 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=13.1
Q ss_pred cEEEEccCCCCchhh
Q 006272 148 DLVGRARTGQGKTLA 162 (652)
Q Consensus 148 dvl~~a~TGsGKTl~ 162 (652)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468999999999985
No 465
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=46.84 E-value=76 Score=24.34 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=43.2
Q ss_pred CCCcEEEEEecCCCccCchhhHHHHHhhCChhhhhcccc--------EEeecC------CCceeeecCh-hhHHHHHhhc
Q 006272 513 LEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKG--------MALTAD------GNGAVFDVPV-ADLDLFRSGA 577 (652)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~--------i~~~~d------~~~a~~dv~~-~~a~~~~~~~ 577 (652)
.....++++..-....+..++..++..+ | .|.. +.+..+ .+++||++.. +.|..++..+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQI-G-----IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTT-S-----CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh-C-----CEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 3445688887766556677776666653 3 2333 444433 2589999988 6677776655
Q ss_pred c----CCCceeeeec
Q 006272 578 D----NAANVSLEVL 588 (652)
Q Consensus 578 ~----~~~~i~l~~~ 588 (652)
+ .++.+.++.+
T Consensus 84 ~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 84 DGKEFSGNPIKVSFA 98 (99)
T ss_dssp TTCBSSSSBCEEEEC
T ss_pred CCCEeCCcEEEEEec
Confidence 5 5555655554
No 466
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=46.51 E-value=9.5 Score=34.88 Aligned_cols=31 Identities=13% Similarity=-0.038 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhcCCcEEEEccCCCCchhhhH
Q 006272 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 133 ~~~Q~~~i~~~l~~~dvl~~a~TGsGKTl~~~ 164 (652)
++.+... ..+..+.-+++.++.|||||+..-
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 4454444 334567789999999999998543
No 467
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=46.48 E-value=17 Score=37.84 Aligned_cols=68 Identities=10% Similarity=0.000 Sum_probs=44.0
Q ss_pred CeEEEEeccHHHHHHHHHHHHHHhcCCCceEEEEeCCcchHHHHHHhcCCCcEEEeCcHHHHHHHHhCCcCCCCceEEe
Q 006272 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (652)
Q Consensus 188 ~~~lil~PtreLa~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~l~~~~~lV 266 (652)
.++||.||++.-+..+++.++.. ++.+..+++.........-.....+|+|||. .+. ..+++.+ ++||
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~-----v~~-~GiDip~-~~VI 258 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISE-MGANFGA-SRVI 258 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESS-----CC----CCCSC-SEEE
T ss_pred CCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECC-----hHH-hCeecCC-CEEE
Confidence 46999999999999999998875 5778888875332211111134578999993 222 2455666 5544
No 468
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=46.45 E-value=7.6 Score=35.17 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCchhhhH
Q 006272 147 SDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~ 164 (652)
+-++++|+.|||||+..-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999998543
No 469
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.43 E-value=30 Score=26.97 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=39.5
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC------CceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~------~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
...+|++..-....+..++..++... ..+.+..+. .++||++.. +.|..++..++ .++.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~---------~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGS---------VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTC---------SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCC---------eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 44577777655445555554444421 223333322 589999987 67777776665 56667
Q ss_pred eeeecc
Q 006272 584 SLEVLK 589 (652)
Q Consensus 584 ~l~~~~ 589 (652)
.+..++
T Consensus 85 ~V~~a~ 90 (102)
T 2fc8_A 85 TLDWAK 90 (102)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 777665
No 470
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=46.13 E-value=27 Score=29.22 Aligned_cols=70 Identities=10% Similarity=0.089 Sum_probs=45.4
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
...+|+|..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|..++..++ .++.+
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~-G-----~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKY-G-----RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGG-S-----CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34578887665555666776666553 2 3444555433 2589999988 67777777665 66677
Q ss_pred eeeeccC
Q 006272 584 SLEVLKQ 590 (652)
Q Consensus 584 ~l~~~~~ 590 (652)
.+..++.
T Consensus 120 ~V~~a~~ 126 (135)
T 2lea_A 120 RVQMARY 126 (135)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 7777753
No 471
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.96 E-value=20 Score=27.46 Aligned_cols=68 Identities=9% Similarity=0.012 Sum_probs=41.3
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
...+|++..-....+..++..++..+ | .|..+.+..+ ..++||++.. +.|..++..++ .++.+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~-G-----~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKY-G-----KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTT-S-----CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc-C-----CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34567776655455566665555442 2 3445555443 3589999988 67777776665 45555
Q ss_pred eeeec
Q 006272 584 SLEVL 588 (652)
Q Consensus 584 ~l~~~ 588 (652)
.++.+
T Consensus 89 ~v~~a 93 (94)
T 2e5h_A 89 KASIA 93 (94)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 55554
No 472
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=45.90 E-value=63 Score=26.26 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=45.4
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeecc
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVLK 589 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~~ 589 (652)
...+|++..- -.+..++..++.. +| .|..+.+....+++||++.. +.|..++..++ .++.+.+..+.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~-~G-----~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSP-FG-----NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHST-TC-----CCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHc-cC-----CEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 4567887752 2455556555544 23 45556666667899999987 66777776655 66777777776
Q ss_pred CCC
Q 006272 590 QLP 592 (652)
Q Consensus 590 ~lp 592 (652)
..+
T Consensus 110 ~~~ 112 (121)
T 2bz2_A 110 KQP 112 (121)
T ss_dssp SSC
T ss_pred CCC
Confidence 544
No 473
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=45.79 E-value=8.1 Score=37.52 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCchhhhH
Q 006272 147 SDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~ 164 (652)
.-++++||.|||||+..-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358999999999998543
No 474
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.70 E-value=7.9 Score=39.80 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchhhh
Q 006272 146 GSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~ 163 (652)
-+-+|+.+|+|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 367999999999999853
No 475
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=45.58 E-value=46 Score=26.38 Aligned_cols=69 Identities=7% Similarity=-0.069 Sum_probs=44.9
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceeeeec
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVL 588 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~ 588 (652)
....+|++..-....+..++..++..+ | .|..+.+. .+++||++.. +.|..++..++ .++.+.++.+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~-G-----~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPF-G-----PMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTT-S-----CCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-C-----CEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 345678877655555666776666552 3 34556665 4899999988 67777776665 5666666666
Q ss_pred cC
Q 006272 589 KQ 590 (652)
Q Consensus 589 ~~ 590 (652)
..
T Consensus 101 ~~ 102 (108)
T 2jvo_A 101 KL 102 (108)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 476
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=45.55 E-value=41 Score=25.05 Aligned_cols=61 Identities=10% Similarity=-0.049 Sum_probs=39.2
Q ss_pred EEEEEecCCCccCchhhHHHHHhhC---Chh--hhhccccEEeecCCCceeeecCh-hhHHHHHhhcc
Q 006272 517 VTVVLEAGKPIYTPSFAFGVLRRFL---PEE--KVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD 578 (652)
Q Consensus 517 ~~~~~~~~~~~~~~~~i~~~l~~~~---~~~--~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~ 578 (652)
.++++..-....+..++..++..+. +.. ....|..+.+..+.+++||++.. +.|..++ .++
T Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 7 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcC
Confidence 4677766555556677777776642 210 00146667777778999999988 6666666 665
No 477
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=45.53 E-value=17 Score=27.58 Aligned_cols=69 Identities=9% Similarity=-0.024 Sum_probs=41.2
Q ss_pred EEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecChhhHHHHHhhcc----CCCceeee
Q 006272 517 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPVADLDLFRSGAD----NAANVSLE 586 (652)
Q Consensus 517 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~~~a~~~~~~~~----~~~~i~l~ 586 (652)
.++++..-....+..++..++..+ | .|..+.+..+ .+++||++....|..++..++ .++.+.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~a~~a~~~l~g~~~~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF-G-----KVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLDNTDFMGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH-T-----CCSEEEECCCSSSCCCCEEEEEEECTTHHHHHHHTSCSSCCSSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc-C-----CEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeEEEEE
Confidence 356665444444555665555553 2 3444555433 358999998855888887766 66777777
Q ss_pred eccCC
Q 006272 587 VLKQL 591 (652)
Q Consensus 587 ~~~~l 591 (652)
.+...
T Consensus 76 ~a~~~ 80 (90)
T 2ki2_A 76 EANPK 80 (90)
T ss_dssp EC---
T ss_pred EcCCC
Confidence 77544
No 478
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=45.47 E-value=11 Score=34.22 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=14.5
Q ss_pred cEEEEccCCCCchhhhHH
Q 006272 148 DLVGRARTGQGKTLAFVL 165 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~~l 165 (652)
-.++.|+.|||||+....
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 368999999999986543
No 479
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=45.38 E-value=7.9 Score=34.40 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
+..+++.++.|||||+..-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998544
No 480
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=51.24 E-value=4.4 Score=33.03 Aligned_cols=31 Identities=6% Similarity=-0.034 Sum_probs=20.5
Q ss_pred CceeeecCh-hhHHHHHhhcc----CCCceeeeecc
Q 006272 559 NGAVFDVPV-ADLDLFRSGAD----NAANVSLEVLK 589 (652)
Q Consensus 559 ~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~~~~ 589 (652)
.++||++.. +.|..++..++ .++.+.+..+.
T Consensus 58 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (116)
T 2lcw_A 58 GEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 93 (116)
Confidence 689999987 66666666555 45555555554
No 481
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=45.10 E-value=9.9 Score=34.67 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=14.8
Q ss_pred cCCcEEEEccCCCCchhh
Q 006272 145 DGSDLVGRARTGQGKTLA 162 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~ 162 (652)
.+.-+.+.+|+|||||+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345688999999999974
No 482
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=45.07 E-value=7.9 Score=39.09 Aligned_cols=16 Identities=31% Similarity=0.354 Sum_probs=13.9
Q ss_pred cEEEEccCCCCchhhh
Q 006272 148 DLVGRARTGQGKTLAF 163 (652)
Q Consensus 148 dvl~~a~TGsGKTl~~ 163 (652)
-.++.+|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5779999999999865
No 483
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=44.97 E-value=8.1 Score=37.20 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=26.3
Q ss_pred CcccccCCCHHHHHHHHHCCCCCChHHH-HHHHHHHh--cCCcEEEEccCCCCchhhh
Q 006272 109 NAVSRFRISVPLREKLKSKGIESLFPIQ-AMTFDMVL--DGSDLVGRARTGQGKTLAF 163 (652)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~~l--~~~dvl~~a~TGsGKTl~~ 163 (652)
..|++++-.+.+.+.|...- ..|+. ..++..+- -.+.+++.+|+|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 35677766666666665431 11221 12222221 1234999999999999843
No 484
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=44.96 E-value=10 Score=29.02 Aligned_cols=71 Identities=10% Similarity=-0.061 Sum_probs=38.6
Q ss_pred EEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC------CceeeecCh-hhHHHHHhhcc----CCCceeee
Q 006272 518 TVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPV-ADLDLFRSGAD----NAANVSLE 586 (652)
Q Consensus 518 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~------~~a~~dv~~-~~a~~~~~~~~----~~~~i~l~ 586 (652)
++++..-....+..++..++.. +|. ..|..+.+..|. +++||++.. +.|..++..++ .++.+.+.
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~-~G~---~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHS-LGV---NDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 78 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHT-TTC---CCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHH-hCC---CceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEE
Confidence 4455544434556667666654 331 134445554432 489999988 67777776666 66667666
Q ss_pred eccCCC
Q 006272 587 VLKQLP 592 (652)
Q Consensus 587 ~~~~lp 592 (652)
.+...|
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 665443
No 485
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=44.94 E-value=9.6 Score=34.47 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCCchhhhH
Q 006272 145 DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~ 164 (652)
.+.-+++.++.|||||+..-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 56778999999999998543
No 486
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=44.92 E-value=11 Score=33.59 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=19.0
Q ss_pred CCCceEEecCcch--hhhhcCcHHHHHHHHHh
Q 006272 259 LSSLKFRVLDEAD--EMLRMGFVEDVELILGK 288 (652)
Q Consensus 259 l~~~~~lViDEah--~~l~~gf~~~~~~i~~~ 288 (652)
..+.+++|+||++ ..++..+...+..++..
T Consensus 97 ~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 3567899999965 33454556666555543
No 487
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=44.89 E-value=27 Score=27.71 Aligned_cols=70 Identities=6% Similarity=-0.023 Sum_probs=45.4
Q ss_pred CcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecC------CCceeeecCh-hhHHHHHhhcc----CCCce
Q 006272 515 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPV-ADLDLFRSGAD----NAANV 583 (652)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d------~~~a~~dv~~-~~a~~~~~~~~----~~~~i 583 (652)
...+|++..-....+..++..++..+ | .|..+.+..+ .+++||++.. +.|..++..++ .++.+
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDY-G-----EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGG-S-----CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 45688887666556667776666653 2 3444555443 3689999988 67777776655 56667
Q ss_pred eeeeccC
Q 006272 584 SLEVLKQ 590 (652)
Q Consensus 584 ~l~~~~~ 590 (652)
.+..+..
T Consensus 99 ~V~~a~~ 105 (110)
T 1oo0_B 99 QVDWCFV 105 (110)
T ss_dssp EEEESEE
T ss_pred EEEEccc
Confidence 7766653
No 488
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=44.71 E-value=7.8 Score=34.62 Aligned_cols=19 Identities=16% Similarity=0.043 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
+.-+++.+++|||||+..-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999998643
No 489
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=44.61 E-value=4.3 Score=38.78 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
.+.+++.+|+|+|||...-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4569999999999998543
No 490
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=44.40 E-value=7.9 Score=35.72 Aligned_cols=20 Identities=20% Similarity=-0.042 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCCchhhhH
Q 006272 145 DGSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~ 164 (652)
.|.-+.+.+|+|+|||+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 55678999999999998543
No 491
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=44.37 E-value=11 Score=37.52 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=15.3
Q ss_pred CcEEEEccCCCCchhhhH
Q 006272 147 SDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 147 ~dvl~~a~TGsGKTl~~~ 164 (652)
..+++.+|+|+|||+.+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999998543
No 492
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=44.34 E-value=19 Score=33.53 Aligned_cols=53 Identities=30% Similarity=0.298 Sum_probs=32.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcC--------CCcccccccchHHHHHHHhhhcCCCceEEEEcc
Q 006272 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (652)
Q Consensus 362 ~~~~~iVF~~s~~~~~~l~~~l~--------~~~~lh~~~~~~~R~~~~~~f~~g~~~vLvaT~ 417 (652)
.+.++||.++++.-+.++++.+. .+..++++.... ........+..+|+|+|.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp 157 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTP 157 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECH
Confidence 34579999999999988887765 233344433221 112223345678999983
No 493
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=44.27 E-value=13 Score=39.04 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=19.1
Q ss_pred cCCcEEEEccCCCCchhhhHHHHHHHHh
Q 006272 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl~~~lpil~~l~ 172 (652)
...++++.+|+|+|||...-. +...+.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~-la~~l~ 226 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEG-LAQQII 226 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHH-HHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH-HHHHHH
Confidence 346899999999999985443 333443
No 494
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=44.12 E-value=8.5 Score=34.34 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006272 146 GSDLVGRARTGQGKTLAFV 164 (652)
Q Consensus 146 ~~dvl~~a~TGsGKTl~~~ 164 (652)
+.-+++.++.|||||+..-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468999999999998543
No 495
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=44.02 E-value=18 Score=35.66 Aligned_cols=15 Identities=27% Similarity=0.118 Sum_probs=13.1
Q ss_pred cEEEEccCCCCchhh
Q 006272 148 DLVGRARTGQGKTLA 162 (652)
Q Consensus 148 dvl~~a~TGsGKTl~ 162 (652)
-+++.++.|||||+.
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 368999999999984
No 496
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.00 E-value=16 Score=28.71 Aligned_cols=71 Identities=14% Similarity=0.080 Sum_probs=44.0
Q ss_pred CCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCC------CceeeecCh-hhHHHHHhhcc----CCCc
Q 006272 514 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPV-ADLDLFRSGAD----NAAN 582 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~------~~a~~dv~~-~~a~~~~~~~~----~~~~ 582 (652)
....+|++..-....+..++..++.. +| .|..+.+..+. .++||++.. +.|..++..++ .++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRP-FG-----SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTT-TC-----CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CC-----CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34568888765554555555444443 22 45556665442 489999988 67777777666 5566
Q ss_pred eeeeeccC
Q 006272 583 VSLEVLKQ 590 (652)
Q Consensus 583 i~l~~~~~ 590 (652)
+.+..+..
T Consensus 87 l~v~~a~~ 94 (103)
T 2cq0_A 87 LNVEWAKP 94 (103)
T ss_dssp CEEEESSC
T ss_pred EEEEECCC
Confidence 66666653
No 497
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=43.78 E-value=8.5 Score=36.10 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCCchh
Q 006272 145 DGSDLVGRARTGQGKTL 161 (652)
Q Consensus 145 ~~~dvl~~a~TGsGKTl 161 (652)
.|.-+.+.+|+|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56778999999999997
No 498
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=43.67 E-value=13 Score=33.55 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=27.1
Q ss_pred CCCceEEecCcchhh--hhcCcHHHHHHHHHhccCCCCceEEEEcccCC
Q 006272 259 LSSLKFRVLDEADEM--LRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (652)
Q Consensus 259 l~~~~~lViDEah~~--l~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 305 (652)
+.+.++||+||+..| .+..|...+..++... ..+|+-++|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~-----~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP-----GTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS-----SCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC-----CcEEEEEeecC
Confidence 566789999998877 4444766666666532 23554466653
No 499
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=43.44 E-value=44 Score=28.54 Aligned_cols=89 Identities=9% Similarity=0.049 Sum_probs=0.0
Q ss_pred ccCCCcEEEEEecCCCccCchhhHHHHHhhCChhhhhccccEEeecCCCceeeecCh-hhHHHHHhhcc----CCCceee
Q 006272 511 SSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSL 585 (652)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~i~~~~d~~~a~~dv~~-~~a~~~~~~~~----~~~~i~l 585 (652)
.......+|++..-....+..++..++..+-....+..+.+.......+++||++.. +.|..++..++ .++.+.+
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Q ss_pred eeccCCCcchhhcc
Q 006272 586 EVLKQLPPLQEREQ 599 (652)
Q Consensus 586 ~~~~~lp~~~~~~~ 599 (652)
..+....+...++.
T Consensus 145 ~~a~~~~~~~~~~~ 158 (158)
T 2kn4_A 145 QMARYGRPPDSHHS 158 (158)
T ss_dssp EEECCSSCCCCCCC
T ss_pred EECCCCCCCCCCCC
No 500
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=43.40 E-value=11 Score=36.98 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=0.0
Q ss_pred HhcCCcEEEEccCCCCchhhhHHHH
Q 006272 143 VLDGSDLVGRARTGQGKTLAFVLPI 167 (652)
Q Consensus 143 ~l~~~dvl~~a~TGsGKTl~~~lpi 167 (652)
+-.|.-+.+.+|+|||||+..-+.+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHh
Done!