Query 006275
Match_columns 652
No_of_seqs 512 out of 3747
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 20:39:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 2.3E-77 7.8E-82 735.4 46.5 493 95-634 413-1308(1321)
2 2iw3_A Elongation factor 3A; a 100.0 4.9E-76 1.7E-80 690.6 44.8 424 97-620 435-978 (986)
3 3g5u_A MCG1178, multidrug resi 100.0 6.2E-75 2.1E-79 712.2 47.5 491 95-632 385-1260(1284)
4 1yqt_A RNAse L inhibitor; ATP- 100.0 1E-75 3.6E-80 660.3 36.2 432 98-630 21-493 (538)
5 3bk7_A ABC transporter ATP-bin 100.0 1.4E-75 4.8E-80 666.0 33.4 434 96-630 82-563 (607)
6 3ozx_A RNAse L inhibitor; ATP 100.0 1.6E-71 5.6E-76 624.8 30.7 420 102-615 4-461 (538)
7 3j16_B RLI1P; ribosome recycli 100.0 2.6E-69 8.9E-74 613.4 35.8 455 102-631 82-560 (608)
8 3ux8_A Excinuclease ABC, A sub 100.0 7.3E-68 2.5E-72 613.5 32.2 434 109-633 30-643 (670)
9 2vf7_A UVRA2, excinuclease ABC 100.0 2.4E-51 8.2E-56 477.9 28.7 339 233-632 354-829 (842)
10 3pih_A Uvrabc system protein A 100.0 1.5E-50 5.3E-55 474.7 33.3 335 240-632 445-904 (916)
11 2r6f_A Excinuclease ABC subuni 100.0 3.7E-50 1.3E-54 468.0 28.1 338 234-631 480-943 (972)
12 2ygr_A Uvrabc system protein A 100.0 1.5E-49 5.3E-54 464.4 29.5 338 234-631 497-961 (993)
13 3tui_C Methionine import ATP-b 100.0 3.9E-47 1.3E-51 404.5 27.1 211 94-345 21-252 (366)
14 3fvq_A Fe(3+) IONS import ATP- 100.0 2.6E-47 8.9E-52 405.6 24.5 208 97-345 4-227 (359)
15 3gfo_A Cobalt import ATP-bindi 100.0 4.1E-47 1.4E-51 392.3 23.3 210 96-346 6-233 (275)
16 2olj_A Amino acid ABC transpor 100.0 1.3E-46 4.4E-51 386.3 26.9 210 96-345 23-247 (263)
17 3rlf_A Maltose/maltodextrin im 100.0 8.2E-47 2.8E-51 404.4 26.1 208 97-345 3-222 (381)
18 2pcj_A ABC transporter, lipopr 100.0 9.1E-47 3.1E-51 379.1 24.8 201 97-339 4-221 (224)
19 1b0u_A Histidine permease; ABC 100.0 1.3E-46 4.4E-51 386.7 26.4 209 97-345 6-241 (262)
20 3tif_A Uncharacterized ABC tra 100.0 8E-47 2.7E-51 382.2 22.8 208 97-342 1-230 (235)
21 1vpl_A ABC transporter, ATP-bi 100.0 2.5E-46 8.5E-51 382.9 26.5 209 95-344 13-233 (256)
22 4g1u_C Hemin import ATP-bindin 100.0 4.2E-46 1.4E-50 383.4 25.5 206 96-344 10-235 (266)
23 1ji0_A ABC transporter; ATP bi 100.0 3.1E-46 1.1E-50 379.1 23.5 207 96-344 5-226 (240)
24 1z47_A CYSA, putative ABC-tran 100.0 4.7E-46 1.6E-50 396.1 25.3 210 95-345 12-234 (355)
25 1g6h_A High-affinity branched- 100.0 1.6E-46 5.6E-51 385.1 21.0 219 96-343 6-239 (257)
26 3gfo_A Cobalt import ATP-bindi 100.0 4E-46 1.4E-50 384.9 23.9 207 422-631 5-234 (275)
27 3tui_C Methionine import ATP-b 100.0 1.5E-45 5.1E-50 392.3 28.0 209 419-631 19-254 (366)
28 2it1_A 362AA long hypothetical 100.0 8.5E-46 2.9E-50 395.5 25.6 208 97-345 3-222 (362)
29 1b0u_A Histidine permease; ABC 100.0 1.4E-45 4.8E-50 379.0 26.1 205 423-631 5-243 (262)
30 2yyz_A Sugar ABC transporter, 100.0 6.9E-46 2.4E-50 395.7 23.1 208 97-345 3-222 (359)
31 1g29_1 MALK, maltose transport 100.0 1.9E-45 6.5E-50 394.7 26.6 208 97-345 3-228 (372)
32 2olj_A Amino acid ABC transpor 100.0 2.9E-45 9.9E-50 376.3 26.8 204 424-631 24-249 (263)
33 3fvq_A Fe(3+) IONS import ATP- 100.0 2.4E-45 8.1E-50 390.5 25.7 204 424-631 4-229 (359)
34 1v43_A Sugar-binding transport 100.0 1.6E-45 5.5E-50 394.7 24.4 209 96-345 10-230 (372)
35 1oxx_K GLCV, glucose, ABC tran 100.0 1.1E-45 3.6E-50 394.4 22.2 208 97-345 3-229 (353)
36 4g1u_C Hemin import ATP-bindin 100.0 3.8E-45 1.3E-49 376.3 25.4 205 422-630 9-237 (266)
37 3tif_A Uncharacterized ABC tra 100.0 4.3E-45 1.5E-49 369.5 24.6 194 424-620 1-225 (235)
38 3d31_A Sulfate/molybdate ABC t 100.0 4.1E-45 1.4E-49 388.5 25.4 203 97-344 1-215 (348)
39 3rlf_A Maltose/maltodextrin im 100.0 5.1E-45 1.8E-49 390.5 25.9 203 424-630 3-223 (381)
40 2pcj_A ABC transporter, lipopr 100.0 1.1E-44 3.9E-49 363.9 26.1 194 423-620 3-219 (224)
41 2ihy_A ABC transporter, ATP-bi 100.0 1.9E-45 6.6E-50 380.9 21.0 213 95-344 19-250 (279)
42 1ji0_A ABC transporter; ATP bi 100.0 1E-44 3.4E-49 368.1 25.8 205 422-630 4-228 (240)
43 2nq2_C Hypothetical ABC transp 100.0 7.5E-45 2.6E-49 371.6 24.5 207 97-344 4-215 (253)
44 2ihy_A ABC transporter, ATP-bi 100.0 4.8E-45 1.6E-49 378.0 22.8 207 421-629 18-251 (279)
45 2onk_A Molybdate/tungstate ABC 100.0 4E-45 1.4E-49 370.6 21.7 202 98-345 2-215 (240)
46 1z47_A CYSA, putative ABC-tran 100.0 1.5E-44 5.1E-49 384.5 27.0 208 420-631 10-236 (355)
47 1vpl_A ABC transporter, ATP-bi 100.0 1.8E-44 6.2E-49 369.1 26.4 205 423-631 14-236 (256)
48 1g6h_A High-affinity branched- 100.0 9.7E-45 3.3E-49 371.9 23.5 202 422-627 5-239 (257)
49 2yz2_A Putative ABC transporte 100.0 9E-45 3.1E-49 373.9 22.4 207 97-344 2-225 (266)
50 2d2e_A SUFC protein; ABC-ATPas 100.0 7.3E-45 2.5E-49 371.3 21.0 209 97-342 3-229 (250)
51 2yyz_A Sugar ABC transporter, 100.0 3.9E-44 1.3E-48 382.3 27.2 204 424-631 3-224 (359)
52 2zu0_C Probable ATP-dependent 100.0 3.8E-44 1.3E-48 369.4 25.1 216 96-344 19-252 (267)
53 3d31_A Sulfate/molybdate ABC t 100.0 3.7E-44 1.3E-48 381.1 25.3 203 424-631 1-218 (348)
54 2it1_A 362AA long hypothetical 100.0 4.4E-44 1.5E-48 382.2 25.8 204 424-631 3-224 (362)
55 2onk_A Molybdate/tungstate ABC 100.0 6.2E-44 2.1E-48 361.9 24.5 201 424-631 1-217 (240)
56 1g29_1 MALK, maltose transport 100.0 9.6E-44 3.3E-48 381.5 26.9 204 424-631 3-230 (372)
57 1oxx_K GLCV, glucose, ABC tran 100.0 5.3E-44 1.8E-48 381.2 24.4 204 424-631 3-231 (353)
58 1v43_A Sugar-binding transport 100.0 7E-44 2.4E-48 382.0 25.0 204 424-631 11-232 (372)
59 2ixe_A Antigen peptide transpo 100.0 9.1E-44 3.1E-48 367.1 24.1 211 96-345 15-244 (271)
60 3nh6_A ATP-binding cassette SU 100.0 1.7E-43 5.9E-48 369.9 25.7 214 96-347 52-278 (306)
61 2yz2_A Putative ABC transporte 100.0 1.8E-43 6.2E-48 364.1 25.3 207 424-632 2-229 (266)
62 3nh6_A ATP-binding cassette SU 100.0 1.5E-43 5.3E-48 370.3 23.5 205 422-631 51-278 (306)
63 2ff7_A Alpha-hemolysin translo 100.0 1.2E-43 4E-48 361.6 21.7 209 97-345 7-231 (247)
64 2pjz_A Hypothetical protein ST 100.0 3E-43 1E-47 361.3 24.4 200 424-630 1-215 (263)
65 1sgw_A Putative ABC transporte 100.0 2.2E-44 7.4E-49 358.7 15.2 191 96-330 9-207 (214)
66 2pjz_A Hypothetical protein ST 100.0 2E-43 6.7E-48 362.6 22.2 199 97-343 1-212 (263)
67 2ff7_A Alpha-hemolysin translo 100.0 4.4E-43 1.5E-47 357.3 24.3 201 424-630 7-232 (247)
68 2pze_A Cystic fibrosis transme 100.0 5.5E-43 1.9E-47 352.8 24.5 207 96-345 5-217 (229)
69 2nq2_C Hypothetical ABC transp 100.0 6.2E-43 2.1E-47 357.4 24.8 198 424-629 4-216 (253)
70 2d2e_A SUFC protein; ABC-ATPas 100.0 3.1E-43 1.1E-47 359.3 22.2 200 424-626 3-229 (250)
71 2qi9_C Vitamin B12 import ATP- 100.0 2.6E-43 8.8E-48 359.1 20.7 197 97-344 4-220 (249)
72 2zu0_C Probable ATP-dependent 100.0 7.7E-43 2.6E-47 359.6 23.9 205 422-629 18-253 (267)
73 2cbz_A Multidrug resistance-as 100.0 3.2E-43 1.1E-47 356.3 20.2 204 97-346 3-217 (237)
74 2ixe_A Antigen peptide transpo 100.0 8.1E-43 2.8E-47 360.1 22.2 203 423-631 15-246 (271)
75 1mv5_A LMRA, multidrug resista 100.0 1.4E-43 4.8E-48 360.4 15.8 202 97-345 1-225 (243)
76 1mv5_A LMRA, multidrug resista 100.0 1E-42 3.5E-47 354.0 19.5 201 424-630 1-226 (243)
77 2qi9_C Vitamin B12 import ATP- 100.0 2.9E-42 9.8E-47 351.4 22.7 197 424-629 4-221 (249)
78 2ghi_A Transport protein; mult 100.0 3.4E-42 1.2E-46 353.4 21.9 211 97-346 17-242 (260)
79 1sgw_A Putative ABC transporte 100.0 1.2E-42 4.1E-47 346.1 16.8 190 423-618 9-210 (214)
80 2pze_A Cystic fibrosis transme 100.0 2.5E-41 8.4E-46 340.7 24.6 199 423-630 5-218 (229)
81 2ghi_A Transport protein; mult 100.0 1.1E-41 3.9E-46 349.5 21.7 203 423-631 16-243 (260)
82 2cbz_A Multidrug resistance-as 100.0 6.4E-42 2.2E-46 346.7 17.7 199 424-631 3-218 (237)
83 3gd7_A Fusion complex of cysti 100.0 6.4E-42 2.2E-46 369.0 18.4 199 96-345 18-241 (390)
84 1tf7_A KAIC; homohexamer, hexa 100.0 4.2E-44 1.4E-48 403.4 -2.8 380 97-617 12-444 (525)
85 3gd7_A Fusion complex of cysti 100.0 5.4E-41 1.9E-45 361.8 19.6 206 418-631 13-243 (390)
86 2bbs_A Cystic fibrosis transme 100.0 2E-40 6.8E-45 344.8 19.4 204 96-345 39-246 (290)
87 3qf4_A ABC transporter, ATP-bi 100.0 7.3E-40 2.5E-44 373.1 25.6 213 95-347 339-567 (587)
88 4a82_A Cystic fibrosis transme 100.0 3.7E-40 1.3E-44 375.2 21.9 214 95-346 337-564 (578)
89 3b5x_A Lipid A export ATP-bind 100.0 1.1E-39 3.7E-44 371.7 25.1 212 96-346 340-567 (582)
90 3qf4_B Uncharacterized ABC tra 100.0 8.4E-40 2.9E-44 373.5 22.6 214 95-346 352-578 (598)
91 3b5x_A Lipid A export ATP-bind 100.0 4.4E-39 1.5E-43 366.7 27.2 204 422-631 339-568 (582)
92 3b60_A Lipid A export ATP-bind 100.0 4.7E-39 1.6E-43 366.5 27.0 204 422-631 339-568 (582)
93 3b60_A Lipid A export ATP-bind 100.0 1.1E-39 3.8E-44 371.6 21.1 212 96-346 340-567 (582)
94 3qf4_B Uncharacterized ABC tra 100.0 2E-39 6.8E-44 370.4 23.2 204 422-631 352-579 (598)
95 3qf4_A ABC transporter, ATP-bi 100.0 5.7E-39 2E-43 365.7 26.1 205 422-631 339-567 (587)
96 2yl4_A ATP-binding cassette SU 100.0 2.7E-39 9.1E-44 369.4 23.2 214 96-346 339-570 (595)
97 4a82_A Cystic fibrosis transme 100.0 4.5E-39 1.5E-43 366.2 25.0 204 422-631 337-565 (578)
98 2yl4_A ATP-binding cassette SU 100.0 8.2E-39 2.8E-43 365.4 24.1 202 423-630 339-570 (595)
99 2bbs_A Cystic fibrosis transme 100.0 1E-38 3.4E-43 332.0 20.8 196 423-630 39-247 (290)
100 4f4c_A Multidrug resistance pr 100.0 2.9E-38 9.8E-43 388.7 22.1 216 95-347 1074-1305(1321)
101 1yqt_A RNAse L inhibitor; ATP- 100.0 1.4E-37 4.8E-42 350.0 21.3 202 95-345 285-492 (538)
102 3bk7_A ABC transporter ATP-bin 100.0 1.9E-37 6.4E-42 352.7 21.2 202 95-345 355-562 (607)
103 3ozx_A RNAse L inhibitor; ATP 100.0 3.7E-37 1.3E-41 345.9 21.3 192 95-332 267-462 (538)
104 3g5u_A MCG1178, multidrug resi 100.0 2.8E-36 9.7E-41 370.1 22.5 205 422-631 385-614 (1284)
105 2iw3_A Elongation factor 3A; a 100.0 7.5E-35 2.6E-39 342.2 25.4 197 424-630 435-635 (986)
106 3j16_B RLI1P; ribosome recycli 100.0 2.5E-35 8.4E-40 334.7 20.0 198 101-346 350-559 (608)
107 3ux8_A Excinuclease ABC, A sub 100.0 2.4E-32 8.3E-37 316.2 17.8 194 436-631 30-299 (670)
108 2vf7_A UVRA2, excinuclease ABC 100.0 1E-28 3.4E-33 287.9 20.3 240 95-345 500-826 (842)
109 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.6E-32 8.9E-37 300.8 -11.4 208 422-646 116-350 (460)
110 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.7E-32 5.7E-37 302.3 -13.5 195 95-343 116-335 (460)
111 4aby_A DNA repair protein RECN 100.0 3.8E-28 1.3E-32 265.2 21.0 222 111-335 49-378 (415)
112 3pih_A Uvrabc system protein A 100.0 5.5E-28 1.9E-32 283.9 20.7 108 237-346 783-902 (916)
113 2r6f_A Excinuclease ABC subuni 100.0 3.3E-28 1.1E-32 283.9 17.4 107 238-346 824-942 (972)
114 2ygr_A Uvrabc system protein A 99.9 6.6E-28 2.3E-32 282.2 16.8 240 96-346 646-960 (993)
115 4aby_A DNA repair protein RECN 99.9 2.5E-27 8.5E-32 258.7 16.9 76 544-620 296-379 (415)
116 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 7.2E-26 2.5E-30 243.3 16.8 82 253-335 273-363 (365)
117 3b85_A Phosphate starvation-in 99.9 4.1E-28 1.4E-32 240.4 -9.2 144 106-320 9-162 (208)
118 1e69_A Chromosome segregation 99.9 2E-25 6.7E-30 236.0 9.3 90 253-343 213-310 (322)
119 4gp7_A Metallophosphoesterase; 99.9 1E-25 3.4E-30 216.3 5.2 144 115-321 1-164 (171)
120 4gp7_A Metallophosphoesterase; 99.9 2.5E-25 8.5E-30 213.6 5.6 149 442-610 1-168 (171)
121 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 9.9E-24 3.4E-28 226.6 18.3 81 538-619 274-363 (365)
122 1ye8_A Protein THEP1, hypothet 99.9 3.1E-25 1.1E-29 214.5 5.9 135 125-325 2-152 (178)
123 3b85_A Phosphate starvation-in 99.9 9.1E-27 3.1E-31 230.7 -5.6 148 432-618 8-172 (208)
124 1e69_A Chromosome segregation 99.9 8.5E-24 2.9E-28 223.4 14.5 89 537-626 213-309 (322)
125 1ye8_A Protein THEP1, hypothet 99.9 2.4E-24 8.3E-29 208.2 1.6 138 452-621 2-160 (178)
126 1tq4_A IIGP1, interferon-induc 99.9 3.6E-26 1.2E-30 247.8 -12.7 171 110-332 36-254 (413)
127 1tq4_A IIGP1, interferon-induc 99.9 1.4E-25 4.9E-30 243.1 -9.9 172 436-616 35-254 (413)
128 2v9p_A Replication protein E1; 99.9 4.1E-27 1.4E-31 245.4 -21.4 163 97-344 101-264 (305)
129 3b9q_A Chloroplast SRP recepto 99.9 5.8E-24 2E-28 222.3 -1.3 173 107-334 84-284 (302)
130 3qkt_A DNA double-strand break 99.9 4.1E-21 1.4E-25 204.3 19.7 78 252-330 241-327 (339)
131 2v9p_A Replication protein E1; 99.9 7.2E-26 2.5E-30 236.0 -17.9 163 424-628 101-264 (305)
132 2o5v_A DNA replication and rep 99.8 1.1E-20 3.7E-25 201.7 17.5 85 254-343 259-353 (359)
133 1znw_A Guanylate kinase, GMP k 99.8 1.1E-24 3.8E-29 215.4 -12.7 174 110-330 9-202 (207)
134 2og2_A Putative signal recogni 99.8 6.5E-23 2.2E-27 218.5 -0.1 166 114-334 148-341 (359)
135 4ad8_A DNA repair protein RECN 99.8 2E-20 6.9E-25 210.0 18.9 78 255-333 392-474 (517)
136 3b9q_A Chloroplast SRP recepto 99.8 1.1E-22 3.8E-27 212.6 -0.7 167 440-618 90-284 (302)
137 2dpy_A FLII, flagellum-specifi 99.8 4.7E-23 1.6E-27 225.8 -3.9 177 96-340 130-338 (438)
138 3aez_A Pantothenate kinase; tr 99.8 4.3E-24 1.5E-28 224.3 -14.5 180 97-333 43-246 (312)
139 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.8E-22 6.3E-27 213.7 -4.4 138 427-617 151-291 (330)
140 1z6g_A Guanylate kinase; struc 99.8 6.4E-24 2.2E-28 211.9 -15.1 168 111-327 11-205 (218)
141 2og2_A Putative signal recogni 99.8 1.1E-21 3.8E-26 209.1 0.0 166 441-618 148-341 (359)
142 3qkt_A DNA double-strand break 99.8 1.8E-19 6E-24 191.7 16.7 77 537-614 242-327 (339)
143 1znw_A Guanylate kinase, GMP k 99.8 6.1E-23 2.1E-27 202.9 -9.5 162 437-614 9-202 (207)
144 2o5v_A DNA replication and rep 99.8 1.5E-19 5.2E-24 192.8 15.8 86 538-628 259-354 (359)
145 2o8b_B DNA mismatch repair pro 99.8 3.5E-21 1.2E-25 229.9 3.1 164 95-335 748-930 (1022)
146 2dpy_A FLII, flagellum-specifi 99.8 3.3E-22 1.1E-26 219.1 -6.0 181 423-627 130-341 (438)
147 2pt7_A CAG-ALFA; ATPase, prote 99.8 6.9E-22 2.4E-26 209.3 -3.7 141 100-333 151-291 (330)
148 1tf7_A KAIC; homohexamer, hexa 99.8 7.4E-21 2.5E-25 213.9 3.6 169 97-333 257-444 (525)
149 3sop_A Neuronal-specific septi 99.8 5.1E-22 1.7E-26 204.5 -6.0 143 125-319 4-153 (270)
150 3aez_A Pantothenate kinase; tr 99.8 1E-22 3.5E-27 213.8 -11.8 174 424-616 43-245 (312)
151 1z6g_A Guanylate kinase; struc 99.8 4.9E-22 1.7E-26 198.3 -6.5 158 438-612 11-206 (218)
152 2obl_A ESCN; ATPase, hydrolase 99.8 3.5E-21 1.2E-25 204.9 -0.8 174 96-335 44-245 (347)
153 2obl_A ESCN; ATPase, hydrolase 99.8 2.8E-21 9.6E-26 205.6 -2.8 188 423-627 44-252 (347)
154 1cr0_A DNA primase/helicase; R 99.8 1.1E-19 3.6E-24 189.4 5.7 177 438-618 23-237 (296)
155 2o8b_B DNA mismatch repair pro 99.8 7.8E-20 2.7E-24 218.3 5.1 165 421-619 747-930 (1022)
156 1cr0_A DNA primase/helicase; R 99.8 7E-20 2.4E-24 190.7 3.1 180 110-333 22-236 (296)
157 1ewq_A DNA mismatch repair pro 99.8 1E-19 3.6E-24 211.2 4.5 146 96-323 549-704 (765)
158 3sop_A Neuronal-specific septi 99.8 6.9E-21 2.4E-25 196.0 -5.0 140 452-603 4-153 (270)
159 2jeo_A Uridine-cytidine kinase 99.8 4.3E-20 1.5E-24 187.3 0.4 166 108-326 10-176 (245)
160 2eyu_A Twitching motility prot 99.8 1.5E-20 5.1E-25 192.5 -3.5 141 98-331 6-147 (261)
161 1w1w_A Structural maintenance 99.8 4.7E-18 1.6E-22 186.4 15.9 75 255-330 329-410 (430)
162 2eyu_A Twitching motility prot 99.8 4E-20 1.4E-24 189.3 -0.8 139 425-613 6-145 (261)
163 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1.8E-18 6E-23 161.7 10.4 81 253-334 51-142 (148)
164 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 3.4E-18 1.2E-22 159.8 10.7 80 537-617 51-141 (148)
165 3auy_A DNA double-strand break 99.7 2E-17 6.7E-22 178.0 17.0 75 255-330 276-359 (371)
166 4a74_A DNA repair and recombin 99.7 2.3E-19 7.8E-24 178.8 1.3 73 261-333 101-201 (231)
167 3thx_A DNA mismatch repair pro 99.7 1.2E-18 4E-23 205.8 7.0 155 422-619 629-803 (934)
168 2i3b_A HCR-ntpase, human cance 99.7 1.7E-19 5.9E-24 175.7 -0.1 140 123-334 1-165 (189)
169 2jeo_A Uridine-cytidine kinase 99.7 2.6E-19 8.9E-24 181.5 0.2 161 435-617 10-180 (245)
170 3thx_A DNA mismatch repair pro 99.7 4.6E-18 1.6E-22 200.8 10.7 153 97-335 631-803 (934)
171 3thx_B DNA mismatch repair pro 99.7 8.5E-19 2.9E-23 206.5 4.1 151 97-324 640-803 (918)
172 2ehv_A Hypothetical protein PH 99.7 3.6E-19 1.2E-23 179.7 0.2 71 261-331 119-207 (251)
173 2qnr_A Septin-2, protein NEDD5 99.7 7.3E-20 2.5E-24 191.4 -6.1 158 101-317 2-168 (301)
174 1w1w_A Structural maintenance 99.7 4.4E-17 1.5E-21 178.7 15.6 75 539-614 329-410 (430)
175 2ehv_A Hypothetical protein PH 99.7 8.3E-18 2.8E-22 169.6 8.2 178 425-614 7-206 (251)
176 2i3b_A HCR-ntpase, human cance 99.7 3.1E-19 1.1E-23 173.9 -2.9 143 450-621 1-168 (189)
177 2qnr_A Septin-2, protein NEDD5 99.7 9.7E-20 3.3E-24 190.5 -7.3 158 428-601 2-168 (301)
178 1ewq_A DNA mismatch repair pro 99.7 5.1E-18 1.7E-22 197.0 5.7 145 424-607 550-704 (765)
179 3thx_B DNA mismatch repair pro 99.7 5.7E-18 2E-22 199.4 6.1 152 424-609 640-804 (918)
180 4a74_A DNA repair and recombin 99.7 4.5E-17 1.5E-21 162.1 10.6 143 446-616 21-200 (231)
181 3asz_A Uridine kinase; cytidin 99.7 6.1E-20 2.1E-24 181.3 -10.9 143 120-317 3-162 (211)
182 1rj9_A FTSY, signal recognitio 99.7 7.8E-18 2.7E-22 176.0 1.4 141 122-317 101-259 (304)
183 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.2E-16 4.1E-21 158.9 8.8 166 437-616 9-192 (235)
184 2w0m_A SSO2452; RECA, SSPF, un 99.6 1.2E-16 4.1E-21 158.9 7.8 168 110-333 9-193 (235)
185 1pui_A ENGB, probable GTP-bind 99.6 4.8E-17 1.7E-21 159.6 4.2 159 424-589 3-196 (210)
186 3asz_A Uridine kinase; cytidin 99.6 1.2E-18 4.2E-23 171.8 -8.3 142 447-601 3-162 (211)
187 1wb9_A DNA mismatch repair pro 99.6 5E-17 1.7E-21 189.7 1.6 158 97-332 577-745 (800)
188 3szr_A Interferon-induced GTP- 99.6 8.6E-19 3E-23 200.0 -13.3 152 97-318 10-198 (608)
189 3kta_B Chromosome segregation 99.6 3.6E-15 1.2E-19 142.9 13.1 92 253-345 58-157 (173)
190 1pui_A ENGB, probable GTP-bind 99.6 1.2E-17 4E-22 164.0 -4.5 180 97-303 3-194 (210)
191 3jvv_A Twitching mobility prot 99.6 1.4E-16 4.7E-21 170.0 3.3 126 446-615 119-245 (356)
192 3jvv_A Twitching mobility prot 99.6 1.2E-16 4E-21 170.5 2.5 138 101-331 92-245 (356)
193 2qag_C Septin-7; cell cycle, c 99.6 2.3E-17 7.9E-22 179.3 -3.2 160 96-318 10-179 (418)
194 1nlf_A Regulatory protein REPA 99.6 1.6E-15 5.5E-20 156.4 9.4 146 120-320 27-185 (279)
195 3kta_B Chromosome segregation 99.6 4E-15 1.4E-19 142.5 10.6 92 537-629 58-157 (173)
196 1rj9_A FTSY, signal recognitio 99.6 2E-16 6.7E-21 165.3 0.9 141 449-601 101-259 (304)
197 1pzn_A RAD51, DNA repair and r 99.6 3.1E-16 1.1E-20 167.2 2.2 156 111-334 118-304 (349)
198 1nlf_A Regulatory protein REPA 99.6 4.8E-15 1.6E-19 152.9 9.5 143 447-604 27-185 (279)
199 3szr_A Interferon-induced GTP- 99.5 1.8E-16 6.3E-21 180.8 -2.5 169 424-619 10-227 (608)
200 1wb9_A DNA mismatch repair pro 99.5 1.3E-15 4.5E-20 177.8 4.1 161 424-619 577-748 (800)
201 2qag_C Septin-7; cell cycle, c 99.5 2.7E-16 9.4E-21 170.8 -2.4 161 423-603 10-180 (418)
202 1pzn_A RAD51, DNA repair and r 99.5 1.5E-15 5.2E-20 161.8 3.1 153 440-619 120-305 (349)
203 2cvh_A DNA repair and recombin 99.5 3.2E-14 1.1E-18 140.4 12.2 147 439-616 8-185 (220)
204 2cvh_A DNA repair and recombin 99.5 3E-14 1E-18 140.6 12.0 75 258-332 83-185 (220)
205 4ad8_A DNA repair protein RECN 99.5 1.9E-14 6.5E-19 161.4 9.2 78 538-616 391-473 (517)
206 1s96_A Guanylate kinase, GMP k 99.5 1.8E-15 6.3E-20 150.7 -0.7 127 118-321 11-145 (219)
207 2ewv_A Twitching motility prot 99.5 5.2E-15 1.8E-19 159.0 1.3 124 112-330 127-257 (372)
208 1zp6_A Hypothetical protein AT 99.5 1.8E-15 6E-20 146.5 -2.9 149 446-610 5-169 (191)
209 1zp6_A Hypothetical protein AT 99.5 5.5E-16 1.9E-20 150.1 -6.5 132 119-304 5-146 (191)
210 1lw7_A Transcriptional regulat 99.5 2.6E-17 9E-22 176.6 -17.9 165 112-329 157-341 (365)
211 2gza_A Type IV secretion syste 99.5 5.3E-15 1.8E-19 158.4 -0.4 144 99-333 137-303 (361)
212 1lw7_A Transcriptional regulat 99.4 1.5E-15 5.1E-20 163.0 -5.7 165 439-614 157-342 (365)
213 2ewv_A Twitching motility prot 99.4 1.5E-14 5.1E-19 155.4 1.7 127 438-610 126-253 (372)
214 2qag_B Septin-6, protein NEDD5 99.4 7.8E-15 2.7E-19 158.9 -0.9 179 97-316 16-219 (427)
215 1htw_A HI0065; nucleotide-bind 99.4 1.2E-15 4E-20 144.2 -6.7 82 100-183 10-96 (158)
216 2bdt_A BH3686; alpha-beta prot 99.4 8.6E-17 2.9E-21 155.9 -15.9 164 450-627 2-181 (189)
217 2bdt_A BH3686; alpha-beta prot 99.4 1.4E-16 4.8E-21 154.4 -15.3 163 123-342 2-180 (189)
218 1n0w_A DNA repair protein RAD5 99.4 2E-12 6.7E-17 129.5 13.9 145 446-616 20-209 (243)
219 2rcn_A Probable GTPase ENGC; Y 99.4 1.1E-13 3.9E-18 146.9 3.6 115 113-274 206-328 (358)
220 3auy_A DNA double-strand break 99.4 8.3E-13 2.8E-17 141.9 10.1 75 539-614 276-359 (371)
221 1s96_A Guanylate kinase, GMP k 99.4 7.7E-14 2.6E-18 138.9 1.3 127 445-605 11-145 (219)
222 2bbw_A Adenylate kinase 4, AK4 99.4 2.3E-14 8E-19 144.9 -2.6 133 449-590 26-197 (246)
223 1n0w_A DNA repair protein RAD5 99.4 3.3E-12 1.1E-16 127.9 13.0 31 119-149 20-52 (243)
224 1htw_A HI0065; nucleotide-bind 99.4 6.9E-15 2.4E-19 138.9 -6.2 83 427-513 10-97 (158)
225 2gza_A Type IV secretion syste 99.3 4E-14 1.4E-18 151.6 -2.4 152 426-617 137-303 (361)
226 3e70_C DPA, signal recognition 99.3 8.9E-14 3E-18 146.6 0.1 155 120-333 126-305 (328)
227 2yhs_A FTSY, cell division pro 99.3 4.8E-14 1.6E-18 154.7 -2.2 147 113-314 283-447 (503)
228 2bbw_A Adenylate kinase 4, AK4 99.3 1.1E-14 3.9E-19 147.2 -7.5 143 122-304 26-195 (246)
229 1udx_A The GTP-binding protein 99.3 3.4E-13 1.2E-17 146.4 1.8 146 113-314 147-306 (416)
230 3e70_C DPA, signal recognition 99.3 4.4E-13 1.5E-17 141.3 1.8 156 447-618 126-306 (328)
231 2qag_B Septin-6, protein NEDD5 99.3 1.4E-13 5E-18 149.0 -2.1 167 425-600 17-219 (427)
232 1p9r_A General secretion pathw 99.3 9.9E-15 3.4E-19 158.7 -11.4 136 424-566 143-314 (418)
233 1nij_A Hypothetical protein YJ 99.3 1.1E-14 3.6E-19 153.4 -11.3 144 451-607 5-196 (318)
234 3ec2_A DNA replication protein 99.3 1.7E-13 5.9E-18 131.5 -1.9 109 444-601 32-144 (180)
235 2qm8_A GTPase/ATPase; G protei 99.3 4.1E-15 1.4E-19 157.8 -14.9 78 97-174 29-120 (337)
236 1nij_A Hypothetical protein YJ 99.3 1E-14 3.6E-19 153.4 -12.6 56 258-322 140-195 (318)
237 2oap_1 GSPE-2, type II secreti 99.2 2.4E-14 8.1E-19 159.7 -11.3 184 111-324 248-458 (511)
238 2qm8_A GTPase/ATPase; G protei 99.2 5.9E-14 2E-18 148.8 -7.8 64 425-488 30-93 (337)
239 2oap_1 GSPE-2, type II secreti 99.2 1.6E-14 5.5E-19 161.0 -12.8 161 437-609 247-459 (511)
240 2kjq_A DNAA-related protein; s 99.2 6.1E-12 2.1E-16 117.5 6.0 89 439-599 30-124 (149)
241 1p9r_A General secretion pathw 99.2 1.7E-14 5.8E-19 156.9 -14.0 61 97-159 143-203 (418)
242 3ec2_A DNA replication protein 99.2 1.1E-12 3.9E-17 125.8 0.3 43 275-317 98-144 (180)
243 3lda_A DNA repair protein RAD5 99.2 4.9E-11 1.7E-15 128.9 13.1 142 446-616 174-363 (400)
244 2f1r_A Molybdopterin-guanine d 99.2 7.2E-14 2.5E-18 133.6 -8.2 36 124-159 3-41 (171)
245 1udx_A The GTP-binding protein 99.2 2.8E-12 9.5E-17 139.3 2.8 152 440-609 147-318 (416)
246 1sxj_E Activator 1 40 kDa subu 99.2 1.8E-11 6.1E-16 129.9 7.8 137 125-327 38-186 (354)
247 3lda_A DNA repair protein RAD5 99.2 1E-10 3.5E-15 126.4 12.8 34 119-152 174-209 (400)
248 2yv5_A YJEQ protein; hydrolase 99.2 2.2E-12 7.5E-17 134.7 -0.7 122 119-272 161-300 (302)
249 2yhs_A FTSY, cell division pro 99.2 3E-12 1E-16 140.5 0.2 150 440-602 283-450 (503)
250 2rcn_A Probable GTPase ENGC; Y 99.2 5.3E-12 1.8E-16 134.1 1.4 114 440-558 206-328 (358)
251 1sq5_A Pantothenate kinase; P- 99.1 1.6E-13 5.5E-18 143.7 -10.9 83 97-182 37-149 (308)
252 1lvg_A Guanylate kinase, GMP k 99.1 1.5E-14 5.2E-19 141.6 -17.8 151 448-615 2-173 (198)
253 1odf_A YGR205W, hypothetical 3 99.1 1.5E-12 5.1E-17 135.1 -3.9 136 121-294 29-169 (290)
254 3c8u_A Fructokinase; YP_612366 99.1 6.8E-13 2.3E-17 130.7 -6.3 141 447-609 19-168 (208)
255 3c8u_A Fructokinase; YP_612366 99.1 3.5E-13 1.2E-17 132.7 -8.6 148 120-325 19-168 (208)
256 1sxj_E Activator 1 40 kDa subu 99.1 9.9E-11 3.4E-15 124.1 9.3 128 452-602 38-176 (354)
257 1odf_A YGR205W, hypothetical 3 99.1 3E-12 1E-16 132.8 -2.7 120 449-578 30-169 (290)
258 2f1r_A Molybdopterin-guanine d 99.1 7.6E-13 2.6E-17 126.5 -6.9 100 451-565 3-125 (171)
259 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 3E-13 1E-17 145.6 -11.0 160 119-342 16-209 (392)
260 1sq5_A Pantothenate kinase; P- 99.1 1E-12 3.6E-17 137.5 -8.0 133 424-576 37-199 (308)
261 2kjq_A DNAA-related protein; s 99.1 7.4E-11 2.5E-15 110.1 5.3 35 112-152 30-64 (149)
262 1ls1_A Signal recognition part 99.1 9.7E-11 3.3E-15 121.7 6.5 127 441-598 91-220 (295)
263 1in4_A RUVB, holliday junction 99.0 6.3E-13 2.1E-17 140.7 -12.5 168 98-325 19-211 (334)
264 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 5.7E-13 2E-17 143.4 -13.2 158 446-626 16-209 (392)
265 1vma_A Cell division protein F 99.0 8.2E-11 2.8E-15 122.8 3.5 97 444-572 98-197 (306)
266 2px0_A Flagellar biosynthesis 99.0 4.3E-10 1.5E-14 116.9 8.9 135 121-334 103-244 (296)
267 2x8a_A Nuclear valosin-contain 99.0 8.7E-14 3E-18 143.3 -19.4 47 109-159 32-78 (274)
268 1in4_A RUVB, holliday junction 99.0 3.2E-13 1.1E-17 143.0 -15.8 162 425-609 19-211 (334)
269 2x8a_A Nuclear valosin-contain 99.0 4.9E-13 1.7E-17 137.7 -14.2 138 436-587 32-191 (274)
270 1ypw_A Transitional endoplasmi 99.0 1.5E-10 5.3E-15 136.0 4.6 32 443-474 504-535 (806)
271 2yv5_A YJEQ protein; hydrolase 99.0 5E-11 1.7E-15 124.3 -0.3 107 448-556 163-300 (302)
272 1ls1_A Signal recognition part 99.0 4.6E-10 1.6E-14 116.6 6.7 130 98-303 77-207 (295)
273 2px0_A Flagellar biosynthesis 98.9 8.4E-10 2.9E-14 114.7 7.3 135 448-619 103-245 (296)
274 1vma_A Cell division protein F 98.9 2.7E-10 9.3E-15 118.8 3.3 42 116-157 97-138 (306)
275 3euj_A Chromosome partition pr 98.9 2.9E-10 9.8E-15 125.1 3.0 50 437-487 17-66 (483)
276 1u0l_A Probable GTPase ENGC; p 98.9 6.6E-11 2.2E-15 123.4 -2.2 55 118-172 164-231 (301)
277 3euj_A Chromosome partition pr 98.9 3.4E-10 1.2E-14 124.6 3.3 75 537-614 373-464 (483)
278 1t9h_A YLOQ, probable GTPase E 98.9 5.8E-11 2E-15 123.7 -2.6 68 118-186 168-251 (307)
279 2dr3_A UPF0273 protein PH0284; 98.9 9.7E-09 3.3E-13 102.5 12.7 56 276-331 127-196 (247)
280 2dr3_A UPF0273 protein PH0284; 98.9 1.4E-08 4.8E-13 101.4 13.6 56 560-615 127-196 (247)
281 1u0l_A Probable GTPase ENGC; p 98.9 3E-10 1E-14 118.4 0.4 99 447-546 166-294 (301)
282 2ius_A DNA translocase FTSK; n 98.7 4.3E-10 1.5E-14 124.6 -3.2 167 442-613 159-362 (512)
283 2ius_A DNA translocase FTSK; n 98.7 2.5E-10 8.5E-15 126.5 -5.3 173 115-328 159-361 (512)
284 3k1j_A LON protease, ATP-depen 98.7 1.9E-09 6.5E-14 123.0 0.4 180 101-303 38-226 (604)
285 2r6a_A DNAB helicase, replicat 98.7 5.3E-09 1.8E-13 115.2 3.7 175 438-618 191-401 (454)
286 3tr0_A Guanylate kinase, GMP k 98.7 9.8E-10 3.4E-14 106.9 -2.3 52 117-172 1-62 (205)
287 2zr9_A Protein RECA, recombina 98.7 1.8E-08 6.2E-13 107.0 6.9 69 266-334 126-232 (349)
288 1oix_A RAS-related protein RAB 98.7 1.2E-08 4E-13 98.5 4.9 36 551-588 153-188 (191)
289 1qhl_A Protein (cell division 98.7 5.2E-10 1.8E-14 111.6 -4.9 54 97-158 9-62 (227)
290 1t9h_A YLOQ, probable GTPase E 98.6 1.8E-09 6E-14 112.5 -1.9 102 447-550 170-302 (307)
291 1iy2_A ATP-dependent metallopr 98.6 1.8E-11 6E-16 126.0 -17.0 130 425-571 50-195 (278)
292 3lnc_A Guanylate kinase, GMP k 98.6 8.1E-09 2.8E-13 102.9 2.4 40 110-149 14-54 (231)
293 1ixz_A ATP-dependent metallopr 98.6 2.1E-11 7E-16 123.5 -17.3 131 425-572 26-172 (254)
294 1qhl_A Protein (cell division 98.6 8.7E-10 3E-14 110.0 -5.4 57 424-488 9-65 (227)
295 2r6a_A DNAB helicase, replicat 98.6 5.6E-08 1.9E-12 107.0 8.2 177 111-333 191-400 (454)
296 1oix_A RAS-related protein RAB 98.6 4.3E-08 1.5E-12 94.5 6.2 35 267-303 153-187 (191)
297 3lnc_A Guanylate kinase, GMP k 98.6 1.1E-08 3.6E-13 102.1 1.6 39 438-476 15-54 (231)
298 2zr9_A Protein RECA, recombina 98.5 1.8E-07 6.3E-12 99.2 9.7 138 446-619 57-233 (349)
299 3nwj_A ATSK2; P loop, shikimat 98.5 5.4E-09 1.9E-13 105.8 -2.4 52 96-147 16-72 (250)
300 3cmw_A Protein RECA, recombina 98.5 1.3E-05 4.4E-10 99.6 26.3 29 447-475 729-757 (1706)
301 3k1j_A LON protease, ATP-depen 98.5 1.2E-08 4.2E-13 116.3 -0.4 155 429-588 39-227 (604)
302 3nwj_A ATSK2; P loop, shikimat 98.5 8.6E-09 2.9E-13 104.3 -2.1 52 423-474 16-72 (250)
303 3kta_A Chromosome segregation 98.5 1.2E-07 4.1E-12 90.4 5.5 60 111-171 13-90 (182)
304 1jjv_A Dephospho-COA kinase; P 98.5 6.8E-08 2.3E-12 94.2 3.6 126 452-615 4-132 (206)
305 1svm_A Large T antigen; AAA+ f 98.4 9.6E-10 3.3E-14 117.8 -10.7 131 438-572 157-312 (377)
306 2f9l_A RAB11B, member RAS onco 98.4 1E-07 3.6E-12 92.2 4.7 35 552-588 130-164 (199)
307 3tr0_A Guanylate kinase, GMP k 98.4 8.1E-08 2.8E-12 93.2 3.5 40 444-487 1-40 (205)
308 2qtf_A Protein HFLX, GTP-bindi 98.4 1.5E-07 5.2E-12 100.4 5.1 133 452-588 181-350 (364)
309 2e87_A Hypothetical protein PH 98.4 4.2E-07 1.5E-11 96.7 8.1 62 255-317 227-293 (357)
310 3kta_A Chromosome segregation 98.3 2.8E-07 9.7E-12 87.8 4.6 39 441-480 18-56 (182)
311 3hr8_A Protein RECA; alpha and 98.3 4.2E-07 1.4E-11 96.5 6.3 36 119-154 57-92 (356)
312 2ce7_A Cell division protein F 98.3 3.5E-07 1.2E-11 100.7 5.6 112 439-604 40-168 (476)
313 2f9l_A RAB11B, member RAS onco 98.3 3.3E-07 1.1E-11 88.6 4.6 34 268-303 130-163 (199)
314 1jjv_A Dephospho-COA kinase; P 98.3 2.9E-07 9.8E-12 89.7 3.8 70 260-331 60-132 (206)
315 4eun_A Thermoresistant glucoki 98.3 4.3E-08 1.5E-12 95.4 -2.3 39 117-159 23-61 (200)
316 2xau_A PRE-mRNA-splicing facto 98.3 3.4E-08 1.1E-12 115.6 -3.7 73 538-610 185-262 (773)
317 2ce7_A Cell division protein F 98.3 3.4E-07 1.2E-11 100.9 4.3 59 262-320 93-168 (476)
318 3uie_A Adenylyl-sulfate kinase 98.3 2.6E-08 8.9E-13 97.0 -4.1 60 428-488 3-64 (200)
319 1lvg_A Guanylate kinase, GMP k 98.3 1.7E-07 6E-12 91.2 1.6 57 270-331 116-173 (198)
320 2e87_A Hypothetical protein PH 98.3 1.1E-06 3.9E-11 93.4 7.9 122 451-602 168-294 (357)
321 2xau_A PRE-mRNA-splicing facto 98.2 5.6E-07 1.9E-11 105.2 5.4 72 254-325 185-261 (773)
322 3uie_A Adenylyl-sulfate kinase 98.2 5.1E-08 1.7E-12 94.9 -3.5 57 101-158 3-61 (200)
323 3a00_A Guanylate kinase, GMP k 98.2 3.4E-07 1.2E-11 88.0 2.2 28 123-150 1-28 (186)
324 3a00_A Guanylate kinase, GMP k 98.2 2.6E-07 8.9E-12 88.8 1.2 31 450-480 1-31 (186)
325 2j41_A Guanylate kinase; GMP, 98.2 6.4E-07 2.2E-11 86.9 3.9 35 118-152 1-35 (207)
326 2j41_A Guanylate kinase; GMP, 98.2 7.8E-07 2.7E-11 86.2 4.1 35 445-479 1-35 (207)
327 1fnn_A CDC6P, cell division co 98.1 1.3E-05 4.6E-10 85.1 13.0 47 276-323 124-176 (389)
328 2qtf_A Protein HFLX, GTP-bindi 98.1 2.7E-06 9.2E-11 90.7 7.4 61 239-303 281-349 (364)
329 4e22_A Cytidylate kinase; P-lo 98.1 2.7E-07 9.3E-12 93.3 -1.3 35 448-482 25-62 (252)
330 4dcu_A GTP-binding protein ENG 98.1 8.8E-06 3E-10 89.4 10.7 56 263-319 88-144 (456)
331 4eun_A Thermoresistant glucoki 98.1 1E-06 3.4E-11 85.6 2.4 41 444-488 23-63 (200)
332 4e22_A Cytidylate kinase; P-lo 98.1 5.7E-07 1.9E-11 91.0 0.1 43 110-155 17-62 (252)
333 4a1f_A DNAB helicase, replicat 98.0 6.3E-06 2.1E-10 86.8 7.3 55 258-314 108-164 (338)
334 1kgd_A CASK, peripheral plasma 98.0 1.5E-06 5.2E-11 83.0 2.4 34 122-155 4-38 (180)
335 3vaa_A Shikimate kinase, SK; s 98.0 2.3E-06 7.8E-11 83.0 3.6 38 110-147 12-49 (199)
336 3t34_A Dynamin-related protein 98.0 1.6E-05 5.5E-10 84.5 10.3 43 110-155 24-68 (360)
337 1kgd_A CASK, peripheral plasma 98.0 1.9E-06 6.6E-11 82.3 2.5 34 449-482 4-38 (180)
338 3hr8_A Protein RECA; alpha and 98.0 8.3E-06 2.8E-10 86.5 7.4 36 446-481 57-92 (356)
339 3vaa_A Shikimate kinase, SK; s 98.0 2.7E-06 9.1E-11 82.5 3.3 38 437-474 12-49 (199)
340 3t34_A Dynamin-related protein 98.0 4.4E-06 1.5E-10 88.9 5.1 44 438-484 25-70 (360)
341 1fnn_A CDC6P, cell division co 98.0 2E-05 6.9E-10 83.7 10.2 122 452-607 46-176 (389)
342 1zu4_A FTSY; GTPase, signal re 98.0 1.2E-06 4.1E-11 91.8 0.3 45 113-157 95-139 (320)
343 3tqc_A Pantothenate kinase; bi 97.9 3E-07 1E-11 96.2 -4.9 54 430-483 66-127 (321)
344 1ixz_A ATP-dependent metallopr 97.9 2.3E-07 7.8E-12 93.6 -5.7 55 99-157 27-81 (254)
345 4a1f_A DNAB helicase, replicat 97.9 1.8E-05 6.1E-10 83.3 8.3 106 440-575 36-141 (338)
346 2dhr_A FTSH; AAA+ protein, hex 97.9 7.5E-08 2.5E-12 106.8 -10.7 131 425-572 41-187 (499)
347 1iy2_A ATP-dependent metallopr 97.9 2.8E-07 9.4E-12 94.4 -5.8 55 99-157 51-105 (278)
348 3tqc_A Pantothenate kinase; bi 97.9 2.8E-07 9.7E-12 96.4 -5.8 62 101-171 64-133 (321)
349 2dy1_A Elongation factor G; tr 97.9 3.6E-06 1.2E-10 96.8 2.7 45 273-319 95-139 (665)
350 3kl4_A SRP54, signal recogniti 97.9 3E-05 1E-09 84.2 9.7 112 449-589 96-210 (433)
351 2vp4_A Deoxynucleoside kinase; 97.9 3.7E-06 1.3E-10 83.6 2.0 39 445-487 15-53 (230)
352 1v5w_A DMC1, meiotic recombina 97.9 3.2E-05 1.1E-09 81.7 9.2 28 119-146 118-145 (343)
353 2z43_A DNA repair and recombin 97.8 6.9E-05 2.4E-09 78.4 11.5 28 446-473 103-130 (324)
354 2z43_A DNA repair and recombin 97.8 5.2E-05 1.8E-09 79.4 10.5 28 119-146 103-130 (324)
355 2vp4_A Deoxynucleoside kinase; 97.8 5.2E-06 1.8E-10 82.5 2.6 36 119-158 16-51 (230)
356 1rz3_A Hypothetical protein rb 97.8 2.8E-06 9.6E-11 82.6 0.5 41 447-487 19-59 (201)
357 2qby_A CDC6 homolog 1, cell di 97.8 9.4E-06 3.2E-10 85.9 4.5 30 121-150 43-72 (386)
358 3tau_A Guanylate kinase, GMP k 97.8 9.3E-06 3.2E-10 79.4 3.9 29 121-149 6-34 (208)
359 2ffh_A Protein (FFH); SRP54, s 97.8 2.4E-05 8.2E-10 84.8 7.2 151 429-598 81-246 (425)
360 1zu4_A FTSY; GTPase, signal re 97.8 2.4E-06 8.3E-11 89.5 -0.7 49 440-488 95-143 (320)
361 2dy1_A Elongation factor G; tr 97.8 1E-05 3.4E-10 93.1 4.2 133 444-603 3-139 (665)
362 3tau_A Guanylate kinase, GMP k 97.8 1.1E-05 3.6E-10 79.0 3.6 34 448-481 6-40 (208)
363 1rz3_A Hypothetical protein rb 97.8 5E-06 1.7E-10 80.8 1.2 38 120-157 19-56 (201)
364 3ney_A 55 kDa erythrocyte memb 97.8 7.5E-06 2.6E-10 79.5 2.1 31 445-475 14-44 (197)
365 3ney_A 55 kDa erythrocyte memb 97.7 1.1E-05 3.6E-10 78.5 2.8 32 117-148 13-44 (197)
366 1svm_A Large T antigen; AAA+ f 97.7 3.7E-06 1.3E-10 89.9 -0.5 57 111-170 157-218 (377)
367 3bh0_A DNAB-like replicative h 97.7 3.1E-05 1E-09 80.9 6.4 53 260-314 134-189 (315)
368 1knq_A Gluconate kinase; ALFA/ 97.7 9.5E-06 3.3E-10 76.6 2.2 37 448-488 6-42 (175)
369 2qby_A CDC6 homolog 1, cell di 97.7 1.6E-05 5.3E-10 84.2 3.7 125 448-605 43-178 (386)
370 3cr8_A Sulfate adenylyltranfer 97.7 5.1E-06 1.7E-10 93.2 -0.3 43 446-488 365-409 (552)
371 1v5w_A DMC1, meiotic recombina 97.7 0.00011 3.8E-09 77.5 9.9 28 446-473 118-145 (343)
372 2p67_A LAO/AO transport system 97.7 5.5E-07 1.9E-11 95.3 -8.1 59 428-486 34-92 (341)
373 2qt1_A Nicotinamide riboside k 97.6 2.2E-05 7.5E-10 76.3 3.7 41 119-172 17-57 (207)
374 1knq_A Gluconate kinase; ALFA/ 97.6 1.6E-05 5.6E-10 74.9 2.4 34 121-158 6-39 (175)
375 3b9p_A CG5977-PA, isoform A; A 97.6 0.00033 1.1E-08 71.8 12.2 113 449-613 53-186 (297)
376 3lxx_A GTPase IMAP family memb 97.6 0.00018 6.1E-09 71.5 9.8 29 125-153 31-59 (239)
377 3cr8_A Sulfate adenylyltranfer 97.6 1.1E-05 3.6E-10 90.6 0.9 40 119-158 365-406 (552)
378 2p67_A LAO/AO transport system 97.6 5.8E-07 2E-11 95.1 -9.0 59 98-156 31-89 (341)
379 1ega_A Protein (GTP-binding pr 97.6 1.8E-06 6.2E-11 89.6 -5.8 61 544-611 101-170 (301)
380 1kag_A SKI, shikimate kinase I 97.5 2.9E-05 1E-09 72.9 2.7 28 122-149 3-30 (173)
381 3kl4_A SRP54, signal recogniti 97.5 0.00019 6.6E-09 77.9 9.4 35 122-156 96-130 (433)
382 3b9p_A CG5977-PA, isoform A; A 97.5 0.0002 7E-09 73.3 8.8 57 261-317 97-170 (297)
383 1kag_A SKI, shikimate kinase I 97.5 3.4E-05 1.2E-09 72.4 2.6 28 449-476 3-30 (173)
384 3lxx_A GTPase IMAP family memb 97.5 0.00028 9.4E-09 70.1 9.2 40 559-598 110-154 (239)
385 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 4.7E-05 1.6E-09 70.4 3.3 29 115-144 16-44 (149)
386 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 9.3E-05 3.2E-09 68.4 5.3 30 442-472 16-45 (149)
387 3ice_A Transcription terminati 97.4 1.5E-05 5E-10 84.6 -0.7 51 424-474 133-198 (422)
388 3ice_A Transcription terminati 97.4 1.6E-05 5.5E-10 84.3 -0.6 52 96-147 132-198 (422)
389 3bh0_A DNAB-like replicative h 97.4 0.00015 5.1E-09 75.6 6.5 34 439-472 57-90 (315)
390 2hjg_A GTP-binding protein ENG 97.4 0.00086 2.9E-08 73.0 12.6 50 269-319 74-124 (436)
391 1ypw_A Transitional endoplasmi 97.4 8.9E-05 3.1E-09 87.1 4.4 32 445-476 233-264 (806)
392 3m6a_A ATP-dependent protease 97.4 6.8E-06 2.3E-10 92.3 -5.1 59 426-485 85-143 (543)
393 1u94_A RECA protein, recombina 97.3 0.00089 3E-08 70.9 11.5 28 120-147 60-87 (356)
394 2pez_A Bifunctional 3'-phospho 97.3 4.8E-05 1.6E-09 72.1 1.1 38 448-486 3-42 (179)
395 1cke_A CK, MSSA, protein (cyti 97.3 2.8E-05 9.7E-10 76.4 -0.5 34 123-156 5-41 (227)
396 2qt1_A Nicotinamide riboside k 97.3 8.6E-05 2.9E-09 72.1 2.9 31 445-475 16-46 (207)
397 4eaq_A DTMP kinase, thymidylat 97.3 7.7E-05 2.6E-09 74.1 2.6 42 113-155 13-57 (229)
398 2z4s_A Chromosomal replication 97.3 0.0005 1.7E-08 75.0 9.0 41 560-600 193-237 (440)
399 2pez_A Bifunctional 3'-phospho 97.3 6.4E-05 2.2E-09 71.2 1.5 31 121-152 3-33 (179)
400 4eaq_A DTMP kinase, thymidylat 97.3 8.9E-05 3E-09 73.7 2.3 43 440-483 13-58 (229)
401 1cke_A CK, MSSA, protein (cyti 97.2 3.8E-05 1.3E-09 75.5 -0.7 34 450-483 5-41 (227)
402 2www_A Methylmalonic aciduria 97.2 7.1E-05 2.4E-09 79.2 1.2 38 449-486 73-110 (349)
403 2qag_A Septin-2, protein NEDD5 97.2 4.8E-05 1.6E-09 81.0 -0.4 52 423-480 16-67 (361)
404 2www_A Methylmalonic aciduria 97.2 8.9E-05 3.1E-09 78.5 1.7 37 121-157 72-108 (349)
405 2z4s_A Chromosomal replication 97.2 0.00061 2.1E-08 74.4 8.3 41 276-316 193-237 (440)
406 3m6a_A ATP-dependent protease 97.2 7.6E-06 2.6E-10 91.9 -7.0 57 100-157 86-142 (543)
407 3cf0_A Transitional endoplasmi 97.2 0.00052 1.8E-08 70.8 7.1 29 447-475 46-74 (301)
408 3qks_A DNA double-strand break 97.1 0.00018 6.3E-09 70.0 3.3 29 115-144 16-44 (203)
409 2gj8_A MNME, tRNA modification 97.1 0.00041 1.4E-08 65.0 5.5 27 448-474 2-28 (172)
410 1m7g_A Adenylylsulfate kinase; 97.1 7.8E-05 2.7E-09 72.8 0.2 42 446-487 21-64 (211)
411 2qag_A Septin-2, protein NEDD5 97.1 3.5E-05 1.2E-09 82.0 -2.6 52 96-153 16-67 (361)
412 2ffh_A Protein (FFH); SRP54, s 97.1 5.2E-05 1.8E-09 82.2 -1.5 54 100-157 79-132 (425)
413 3qks_A DNA double-strand break 97.1 0.00044 1.5E-08 67.2 5.3 29 442-471 16-44 (203)
414 4fcw_A Chaperone protein CLPB; 97.1 0.00036 1.2E-08 71.8 4.9 31 124-154 48-78 (311)
415 1m2o_B GTP-binding protein SAR 97.1 0.00042 1.4E-08 66.1 5.0 34 438-472 12-45 (190)
416 1j8m_F SRP54, signal recogniti 97.0 2.4E-05 8.1E-10 81.1 -4.4 58 428-488 78-136 (297)
417 3llm_A ATP-dependent RNA helic 97.0 8.4E-05 2.9E-09 73.8 -0.3 62 260-323 161-227 (235)
418 1m7g_A Adenylylsulfate kinase; 97.0 9.5E-05 3.3E-09 72.1 -0.3 39 119-157 21-61 (211)
419 1u94_A RECA protein, recombina 97.0 0.0032 1.1E-07 66.6 11.4 28 447-474 60-87 (356)
420 1f6b_A SAR1; gtpases, N-termin 97.0 0.00015 5.1E-09 69.8 1.0 54 432-486 7-69 (198)
421 2i1q_A DNA repair and recombin 96.9 0.0019 6.5E-08 67.2 9.1 27 119-145 94-120 (322)
422 1mky_A Probable GTP-binding pr 96.9 0.00064 2.2E-08 74.1 5.5 38 451-488 181-230 (439)
423 2dhr_A FTSH; AAA+ protein, hex 96.9 0.00014 4.7E-09 80.6 -0.1 55 100-158 43-97 (499)
424 1y63_A LMAJ004144AAA protein; 96.9 0.00037 1.3E-08 66.4 2.9 32 115-146 2-33 (184)
425 2if2_A Dephospho-COA kinase; a 96.9 0.00042 1.4E-08 66.8 2.9 21 125-145 3-23 (204)
426 2yvu_A Probable adenylyl-sulfa 96.8 0.00028 9.5E-09 67.1 1.5 36 119-154 9-44 (186)
427 2i1q_A DNA repair and recombin 96.8 0.0024 8.3E-08 66.4 8.7 27 446-472 94-120 (322)
428 2q6t_A DNAB replication FORK h 96.8 0.0027 9.3E-08 69.2 9.3 55 258-314 263-318 (444)
429 1m2o_B GTP-binding protein SAR 96.8 0.00071 2.4E-08 64.4 4.1 35 111-146 12-46 (190)
430 2w58_A DNAI, primosome compone 96.8 0.0006 2.1E-08 65.6 3.6 26 451-476 55-80 (202)
431 2yvu_A Probable adenylyl-sulfa 96.8 0.00029 1E-08 67.0 1.3 35 447-481 10-44 (186)
432 2wji_A Ferrous iron transport 96.8 0.0014 4.7E-08 60.7 5.9 24 452-475 5-28 (165)
433 2gj8_A MNME, tRNA modification 96.8 0.00067 2.3E-08 63.6 3.6 27 121-147 2-28 (172)
434 1y63_A LMAJ004144AAA protein; 96.8 0.00052 1.8E-08 65.3 2.8 32 442-473 2-33 (184)
435 2qor_A Guanylate kinase; phosp 96.8 0.0005 1.7E-08 66.6 2.7 30 119-148 8-37 (204)
436 2wjg_A FEOB, ferrous iron tran 96.8 0.00095 3.2E-08 62.9 4.6 22 452-473 9-30 (188)
437 2if2_A Dephospho-COA kinase; a 96.8 0.00054 1.9E-08 66.0 2.8 21 452-472 3-23 (204)
438 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00066 2.2E-08 72.7 3.7 40 447-486 19-69 (396)
439 1f6b_A SAR1; gtpases, N-termin 96.8 0.00023 8E-09 68.4 0.2 42 104-146 6-48 (198)
440 4fcw_A Chaperone protein CLPB; 96.7 0.00076 2.6E-08 69.3 3.9 31 451-481 48-78 (311)
441 3h4m_A Proteasome-activating n 96.7 0.0016 5.3E-08 66.2 6.0 27 448-474 49-75 (285)
442 1j8m_F SRP54, signal recogniti 96.7 0.00017 5.9E-09 74.5 -1.2 54 100-156 77-131 (297)
443 2ohf_A Protein OLA1, GTP-bindi 96.7 0.0007 2.4E-08 72.5 3.5 40 119-158 18-68 (396)
444 1mky_A Probable GTP-binding pr 96.7 0.0012 4.2E-08 71.9 5.1 34 125-158 182-227 (439)
445 3lxw_A GTPase IMAP family memb 96.6 0.0034 1.2E-07 62.8 7.7 25 125-149 23-47 (247)
446 2qor_A Guanylate kinase; phosp 96.6 0.00082 2.8E-08 65.0 3.1 30 446-475 8-37 (204)
447 1sxj_C Activator 1 40 kDa subu 96.6 0.00012 3.9E-09 77.0 -3.5 47 106-152 27-75 (340)
448 1sxj_C Activator 1 40 kDa subu 96.6 8.7E-05 3E-09 78.0 -4.6 50 430-479 24-75 (340)
449 2wji_A Ferrous iron transport 96.6 0.0015 5E-08 60.6 4.1 24 125-148 5-28 (165)
450 2zej_A Dardarin, leucine-rich 96.5 0.0013 4.4E-08 62.1 3.6 26 452-477 4-29 (184)
451 2b8t_A Thymidine kinase; deoxy 96.5 0.0062 2.1E-07 60.1 8.6 52 277-330 89-150 (223)
452 2zej_A Dardarin, leucine-rich 96.5 0.0012 4.3E-08 62.2 3.3 26 125-150 4-29 (184)
453 1njg_A DNA polymerase III subu 96.5 0.0035 1.2E-07 60.8 6.5 42 560-602 125-168 (250)
454 1np6_A Molybdopterin-guanine d 96.5 0.00088 3E-08 63.6 2.1 35 451-485 7-44 (174)
455 3cm0_A Adenylate kinase; ATP-b 96.4 0.0013 4.3E-08 62.2 3.0 26 121-146 2-27 (186)
456 1l8q_A Chromosomal replication 96.4 0.0021 7.3E-08 66.6 5.0 100 449-599 36-140 (324)
457 3h4m_A Proteasome-activating n 96.4 0.0032 1.1E-07 63.8 6.2 27 121-147 49-75 (285)
458 3io5_A Recombination and repai 96.4 0.0073 2.5E-07 62.6 8.6 56 262-317 92-173 (333)
459 1xp8_A RECA protein, recombina 96.4 0.017 5.8E-07 61.3 11.8 28 119-146 70-97 (366)
460 1ega_A Protein (GTP-binding pr 96.4 0.00095 3.3E-08 69.0 2.0 61 260-327 101-170 (301)
461 3t61_A Gluconokinase; PSI-biol 96.4 0.0013 4.4E-08 63.3 2.8 25 123-147 18-42 (202)
462 3lxw_A GTPase IMAP family memb 96.3 0.0049 1.7E-07 61.5 6.8 24 452-475 23-46 (247)
463 1q3t_A Cytidylate kinase; nucl 96.3 0.0017 6E-08 64.2 3.3 27 120-146 13-39 (236)
464 3cm0_A Adenylate kinase; ATP-b 96.3 0.0018 6.1E-08 61.2 3.2 26 448-473 2-27 (186)
465 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0004 1.4E-08 73.2 -1.5 37 112-148 11-49 (359)
466 2v1u_A Cell division control p 96.3 0.0037 1.3E-07 65.8 5.8 28 448-475 42-69 (387)
467 2p5t_B PEZT; postsegregational 96.3 0.00089 3.1E-08 67.2 0.8 41 446-488 28-68 (253)
468 2ga8_A Hypothetical 39.9 kDa p 96.3 0.00045 1.5E-08 72.8 -1.5 37 438-474 10-48 (359)
469 3t61_A Gluconokinase; PSI-biol 96.3 0.0015 5.3E-08 62.8 2.4 25 450-474 18-42 (202)
470 2wjg_A FEOB, ferrous iron tran 96.2 0.0024 8.3E-08 60.0 3.4 22 125-146 9-30 (188)
471 1q3t_A Cytidylate kinase; nucl 96.2 0.0022 7.4E-08 63.6 3.1 26 448-473 14-39 (236)
472 2q6t_A DNAB replication FORK h 96.2 0.0075 2.6E-07 65.7 7.7 35 440-474 190-224 (444)
473 1np6_A Molybdopterin-guanine d 96.1 0.0014 4.7E-08 62.2 1.4 26 124-149 7-32 (174)
474 1lv7_A FTSH; alpha/beta domain 96.1 0.0016 5.4E-08 65.2 1.8 32 115-148 39-70 (257)
475 1sxj_D Activator 1 41 kDa subu 96.1 0.00079 2.7E-08 70.4 -0.6 114 434-601 40-174 (353)
476 2p5t_B PEZT; postsegregational 96.1 0.0022 7.4E-08 64.4 2.7 38 119-158 28-65 (253)
477 3dm5_A SRP54, signal recogniti 96.1 0.031 1.1E-06 60.6 11.8 29 449-477 99-127 (443)
478 3kb2_A SPBC2 prophage-derived 96.1 0.003 1E-07 58.5 3.3 23 125-147 3-25 (173)
479 2v1u_A Cell division control p 96.0 0.0049 1.7E-07 64.8 5.3 28 121-148 42-69 (387)
480 3r20_A Cytidylate kinase; stru 96.0 0.0014 4.6E-08 65.3 0.5 25 123-147 9-33 (233)
481 2b8t_A Thymidine kinase; deoxy 95.9 0.023 7.9E-07 55.9 9.3 52 561-614 89-150 (223)
482 1qhx_A CPT, protein (chloramph 95.9 0.004 1.4E-07 58.2 3.6 26 123-148 3-28 (178)
483 1xp8_A RECA protein, recombina 95.9 0.033 1.1E-06 59.0 11.1 28 446-473 70-97 (366)
484 4ag6_A VIRB4 ATPase, type IV s 95.9 0.0029 9.8E-08 67.7 2.7 36 122-157 34-69 (392)
485 1kht_A Adenylate kinase; phosp 95.9 0.0043 1.5E-07 58.5 3.6 25 123-147 3-27 (192)
486 1lv7_A FTSH; alpha/beta domain 95.9 0.0023 7.8E-08 64.0 1.7 23 453-475 48-70 (257)
487 3kb2_A SPBC2 prophage-derived 95.9 0.004 1.4E-07 57.7 3.3 23 452-474 3-25 (173)
488 3n70_A Transport activator; si 95.9 0.021 7.1E-07 51.8 8.1 37 561-598 76-114 (145)
489 1qhx_A CPT, protein (chloramph 95.8 0.0048 1.6E-07 57.7 3.7 26 450-475 3-28 (178)
490 3d8b_A Fidgetin-like protein 1 95.8 0.015 5.3E-07 61.2 7.9 24 451-474 118-141 (357)
491 1xx6_A Thymidine kinase; NESG, 95.8 0.027 9.3E-07 54.0 8.8 53 276-330 80-142 (191)
492 3lw7_A Adenylate kinase relate 95.8 0.0046 1.6E-07 57.1 3.2 19 125-143 3-21 (179)
493 1gtv_A TMK, thymidylate kinase 95.8 0.0015 5.1E-08 63.2 -0.2 30 452-481 2-31 (214)
494 1gtv_A TMK, thymidylate kinase 95.8 0.0014 4.8E-08 63.3 -0.4 25 125-149 2-26 (214)
495 3r20_A Cytidylate kinase; stru 95.7 0.0029 1E-07 62.8 1.8 25 450-474 9-33 (233)
496 1vht_A Dephospho-COA kinase; s 95.7 0.0048 1.6E-07 60.0 3.1 26 120-145 1-26 (218)
497 2ze6_A Isopentenyl transferase 95.7 0.0048 1.6E-07 62.0 3.2 23 125-147 3-25 (253)
498 3ihw_A Centg3; RAS, centaurin, 95.7 0.012 4E-07 55.6 5.7 36 452-487 22-66 (184)
499 3dm5_A SRP54, signal recogniti 95.7 0.08 2.7E-06 57.4 13.0 28 122-149 99-126 (443)
500 1kht_A Adenylate kinase; phosp 95.7 0.0058 2E-07 57.6 3.6 25 450-474 3-27 (192)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.3e-77 Score=735.43 Aligned_cols=493 Identities=22% Similarity=0.352 Sum_probs=351.9
Q ss_pred CCceEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------
Q 006275 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~---------- 161 (652)
...|+++|++|+|++ .++|+|+||+|++|+.+|||||+|||||||+++|+|+++|++|+|.++|.+.
T Consensus 413 ~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred CCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhh
Confidence 446999999999964 5699999999999999999999999999999999999999999999998542
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
+||||+|+|++ ++.||+|||..+-.+. ..+++.++++.+. +++.+..
T Consensus 493 ~i~~v~Q~~~L-f~~TI~eNI~~g~~~~-----~~~~v~~a~~~a~---------------------------l~~~i~~ 539 (1321)
T 4f4c_A 493 NVAVVSQEPAL-FNCTIEENISLGKEGI-----TREEMVAACKMAN---------------------------AEKFIKT 539 (1321)
T ss_dssp HEEEECSSCCC-CSEEHHHHHHTTCTTC-----CHHHHHHHHHHTT---------------------------CHHHHHH
T ss_pred cccccCCccee-eCCchhHHHhhhcccc-----hHHHHHHHHHHcc---------------------------chhHHHc
Confidence 59999999998 7889999997432110 0122333332221 1111221
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL 319 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l 319 (652)
+ + -|+.+..+++ ..+|||||||||+||||++++|+|||||||||+||+++++.+.+.|++ .|+|+|+|||++..+
T Consensus 540 l-p-~G~~T~vGe~-G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i 616 (1321)
T 4f4c_A 540 L-P-NGYNTLVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTI 616 (1321)
T ss_dssp S-T-TTTSSEESSS-SCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTT
T ss_pred C-C-CCCccEecCC-CCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHH
Confidence 1 1 1444444443 789999999999999999999999999999999999998888887754 589999999999999
Q ss_pred HhhcCeEEEEcCCeEEEecCChHHHHHHHHH------------HH-------------------------------H---
Q 006275 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAA------------WI-------------------------------E--- 353 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~------------~~-------------------------------~--- 353 (652)
+.||+|++|++|++ +..|++++++..... .. .
T Consensus 617 -~~aD~Iivl~~G~i-ve~Gth~eL~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1321)
T 4f4c_A 617 -RNADLIISCKNGQV-VEVGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIM 694 (1321)
T ss_dssp -TTCSEEEEEETTEE-EEEECHHHHHTTTCHHHHHHHHHHHHHHHHHHHCC-----------------------------
T ss_pred -HhCCEEEEeeCCee-eccCCHHHHHHhhhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchh
Confidence 56999999999998 577877665321000 00 0
Q ss_pred ------------------------------H--H------------H---------------------------------
Q 006275 354 ------------------------------S--Q------------Y--------------------------------- 356 (652)
Q Consensus 354 ------------------------------~--~------------~--------------------------------- 356 (652)
. . .
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 774 (1321)
T 4f4c_A 695 NRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVF 774 (1321)
T ss_dssp ---------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHH
T ss_pred hhhhccccccccCCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0
Q ss_pred -HHHH----------------H-------------------------HHHHHHHH-----------------------HH
Q 006275 357 -AAWE----------------K-------------------------QQREIEQT-----------------------KD 371 (652)
Q Consensus 357 -~~~~----------------~-------------------------~~~~~~~~-----------------------~~ 371 (652)
..|. | ..+...++ .+
T Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~ 854 (1321)
T 4f4c_A 775 FTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGK 854 (1321)
T ss_dssp HHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHH
T ss_pred HHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHH
Confidence 0000 0 00000000 00
Q ss_pred HHHHhccC--------------------------------------------------------c----ccc------ch
Q 006275 372 LINRLGAG--------------------------------------------------------A----NSG------RA 385 (652)
Q Consensus 372 ~~~~l~~~--------------------------------------------------------~----~~~------~~ 385 (652)
+++++..+ . ... +.
T Consensus 855 i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1321)
T 4f4c_A 855 ISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADS 934 (1321)
T ss_dssp HHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHH
T ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0 000 00
Q ss_pred ----hH------------HHH----H----H-------------------------------------------------
Q 006275 386 ----SS------------AEK----K----L------------------------------------------------- 392 (652)
Q Consensus 386 ----~~------------~~~----~----l------------------------------------------------- 392 (652)
.. .+. + +
T Consensus 935 ~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~ 1014 (1321)
T 4f4c_A 935 GKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQP 1014 (1321)
T ss_dssp HHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCH
T ss_pred HHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccch
Confidence 00 000 0 0
Q ss_pred ----------------------------------HHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCC--
Q 006275 393 ----------------------------------ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-- 436 (652)
Q Consensus 393 ----------------------------------~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~-- 436 (652)
+|+.+.-. .+++.. ....+...|+..+.|+++||+|+|++
T Consensus 1015 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~-~~~~~~---~~~~~~~~~~~~g~I~f~nVsf~Y~~~~ 1090 (1321)
T 4f4c_A 1015 MRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLR-KISKID---SLSLAGEKKKLYGKVIFKNVRFAYPERP 1090 (1321)
T ss_dssp HHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHH-CCCSSC---TTCCCSBCCCCCCCEEEEEEEECCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CcccCC---CccCCCCCCCCCCeEEEEEEEEeCCCCC
Confidence 00000000 000000 00001122444556999999999964
Q ss_pred -eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cceecccccccCCCCC
Q 006275 437 -RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYFEQNQAEALDLDK 505 (652)
Q Consensus 437 -~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~~~~~~~~~~~~~ 505 (652)
.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||.++. .++++|+ ...++.
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qd---p~LF~g 1167 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQE---PTLFDC 1167 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSS---CCCCSE
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCC---CEeeCc
Confidence 36999999999999999999999999999999999999999999999999873 2355554 244678
Q ss_pred CHHHHHHHhh--hhccHHHHHHHHhhCCCChh------hhcc----CcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCC
Q 006275 506 TVLETVAEAA--EDWRIDDIKGLLGRCNFKAD------MLDR----KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573 (652)
Q Consensus 506 tv~e~~~~~~--~~~~~~~~~~~L~~~~l~~~------~~~~----~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~ 573 (652)
|+++|+.++. ....+++++++++..++... -.|. ...+||||||||+||||||+++|+|||||||||+
T Consensus 1168 TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSa 1247 (1321)
T 4f4c_A 1168 SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSA 1247 (1321)
T ss_dssp EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCcccc
Confidence 9999998763 34567788888888887321 1222 3357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhcCC
Q 006275 574 LDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSFSP 634 (652)
Q Consensus 574 LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~~~ 634 (652)
||+++.+.+++.|++. ++|+|+|+|+++++.+ ||||+||++|+|++ .|++++.++....
T Consensus 1248 LD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE-~Gth~eLl~~~g~ 1308 (1321)
T 4f4c_A 1248 LDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIE-KGTHTQLMSEKGA 1308 (1321)
T ss_dssp TTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEE-EECHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHhCCcH
Confidence 9999999999999875 4699999999999977 99999999999996 5999998875433
No 2
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.9e-76 Score=690.58 Aligned_cols=424 Identities=29% Similarity=0.496 Sum_probs=331.1
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHc-CCCCCCcEEEECCCCceEEEEeccC-ccCC
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKAKSNMKIAFLSQEF-EVSM 174 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G-~~~p~~G~i~~~~~~~~i~~v~Q~~-~~~~ 174 (652)
.|...|++++|+++++|+|+||+|++|++++|+||||||||||+++|+| .+ .|. ... ...+++|++|++ ..++
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~-~~~~~~~v~q~~~~~~~ 509 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQ-EECRTVYVEHDIDGTHS 509 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCT-TTSCEEETTCCCCCCCT
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccc-cceeEEEEccccccccc
Confidence 4777799999999999999999999999999999999999999999995 22 111 000 123578999875 4556
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccccc
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (652)
..|+.+|+.... .. . ..++.++++.+|+.....+
T Consensus 510 ~ltv~e~l~~~~-------------------------------------------~~--~-~~~v~~~L~~lgL~~~~~~ 543 (986)
T 2iw3_A 510 DTSVLDFVFESG-------------------------------------------VG--T-KEAIKDKLIEFGFTDEMIA 543 (986)
T ss_dssp TSBHHHHHHTTC-------------------------------------------SS--C-HHHHHHHHHHTTCCHHHHH
T ss_pred CCcHHHHHHHhh-------------------------------------------cC--H-HHHHHHHHHHcCCChhhhc
Confidence 789999874100 00 0 3456678889999656789
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCeE
Q 006275 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~ 334 (652)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++++|.++|++.|+|||+||||++++.++||+|++|++|++
T Consensus 544 ~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~i 623 (986)
T 2iw3_A 544 MPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKL 623 (986)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCee
Confidence 99999999999999999999999999999999999999999999999977889999999999999999999999999998
Q ss_pred EEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhhhcccccccceEEec
Q 006275 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRF 414 (652)
Q Consensus 335 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 414 (652)
..+.|+++++...... ...... ... ....+.+
T Consensus 624 v~~~G~~~e~~~~~~~----------------------~~~~~~----------------------l~~----~~~~~~~ 655 (986)
T 2iw3_A 624 RKYKGNFTEFVKKCPA----------------------AKAYEE----------------------LSN----TDLEFKF 655 (986)
T ss_dssp EEEESCHHHHHHHCGG----------------------GGGSSS----------------------TTT----CCCCCCC
T ss_pred ecCCCCHHHHHhhhHH----------------------HHHHHh----------------------hhh----hhhhccc
Confidence 6678998776431100 000000 000 0000111
Q ss_pred CCC------CCCCCcEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECce
Q 006275 415 PER------GRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (652)
Q Consensus 415 p~~------~~~~~~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~ 486 (652)
|++ ...++++|+++|++++|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 656 p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~ 735 (986)
T 2iw3_A 656 PEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN 735 (986)
T ss_dssp CCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT
T ss_pred cccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc
Confidence 111 1234678999999999975 67999999999999999999999999999999999999999999999763
Q ss_pred ecccceeccccccc--CCCCCCHHHHHHHh--------------------------------------------------
Q 006275 487 NVLPNYFEQNQAEA--LDLDKTVLETVAEA-------------------------------------------------- 514 (652)
Q Consensus 487 ~~~~~~~~~~~~~~--~~~~~tv~e~~~~~-------------------------------------------------- 514 (652)
...+|+.|+.... .....|+.+++...
T Consensus 736 -~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 736 -CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp -CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred -cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 2233443321100 00111222221100
Q ss_pred ---------------------------------------------------------hhhccHHHHHHHHhhCCCChhh-
Q 006275 515 ---------------------------------------------------------AEDWRIDDIKGLLGRCNFKADM- 536 (652)
Q Consensus 515 ---------------------------------------------------------~~~~~~~~~~~~L~~~~l~~~~- 536 (652)
.......++.+.|+.+|+....
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~ 894 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh
Confidence 0001234578899999996544
Q ss_pred hccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeCC
Q 006275 537 LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGS 616 (652)
Q Consensus 537 ~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g 616 (652)
.++++.+|||||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++++|||+||||++++..+|||+++|++|
T Consensus 895 ~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 68899999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred EEEe
Q 006275 617 NLQD 620 (652)
Q Consensus 617 ~i~~ 620 (652)
++..
T Consensus 975 ~Iv~ 978 (986)
T 2iw3_A 975 RMTP 978 (986)
T ss_dssp BCCC
T ss_pred EEEE
Confidence 9864
No 3
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.2e-75 Score=712.23 Aligned_cols=491 Identities=23% Similarity=0.367 Sum_probs=341.4
Q ss_pred CCceEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------
Q 006275 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~---------- 161 (652)
...|+++|++|+|++ .++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 346999999999974 3699999999999999999999999999999999999999999999998542
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
.||||+|+|+++ +.||+||+..+..+. ..+.+.++++.+ .+...+..
T Consensus 465 ~i~~v~Q~~~l~-~~ti~eNi~~g~~~~-----~~~~~~~~~~~~---------------------------~~~~~i~~ 511 (1284)
T 3g5u_A 465 IIGVVSQEPVLF-ATTIAENIRYGREDV-----TMDEIEKAVKEA---------------------------NAYDFIMK 511 (1284)
T ss_dssp HEEEECSSCCCC-SSCHHHHHHHHCSSC-----CHHHHHHHHHHT---------------------------TCHHHHHH
T ss_pred heEEEcCCCccC-CccHHHHHhcCCCCC-----CHHHHHHHHHHh---------------------------CcHHHHHh
Confidence 599999999885 569999997432110 001111111111 01111111
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL 319 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l 319 (652)
+-. |+.+ .....+.+|||||||||+|||||+.+|+|||||||||+||+++.+++.+.|++ .|+|+|+|||+++.+
T Consensus 512 l~~--g~~t-~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 512 LPH--QFDT-LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTV 588 (1284)
T ss_dssp STT--GGGC-CCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHH
T ss_pred ccc--cccc-cccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 111 2221 23445789999999999999999999999999999999999999999887743 589999999999999
Q ss_pred HhhcCeEEEEcCCeEEEecCChHHHHHHHHHHH---HHHH---------------H------------------------
Q 006275 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWI---ESQY---------------A------------------------ 357 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~---~~~~---------------~------------------------ 357 (652)
.. ||+|++|++|++ .+.|+++++........ ..+. .
T Consensus 589 ~~-~d~i~vl~~G~i-~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1284)
T 3g5u_A 589 RN-ADVIAGFDGGVI-VEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRK 666 (1284)
T ss_dssp TT-CSEEEECSSSCC-CCEECHHHHHHTTSHHHHHHHHTC----------------------------------------
T ss_pred Hc-CCEEEEEECCEE-EEECCHHHHHhCCCHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc
Confidence 65 999999999988 47788777643210000 0000 0
Q ss_pred -------------------------------------------------------------------HHH----------
Q 006275 358 -------------------------------------------------------------------AWE---------- 360 (652)
Q Consensus 358 -------------------------------------------------------------------~~~---------- 360 (652)
.|.
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 746 (1284)
T 3g5u_A 667 SICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQ 746 (1284)
T ss_dssp -----------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred ccccccccccccchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHH
Confidence 000
Q ss_pred ----------------------------H-HHHHHHHHHH-HHHHhc--------c-CccccchhH--------------
Q 006275 361 ----------------------------K-QQREIEQTKD-LINRLG--------A-GANSGRASS-------------- 387 (652)
Q Consensus 361 ----------------------------~-~~~~~~~~~~-~~~~l~--------~-~~~~~~~~~-------------- 387 (652)
. ..+...+++. ..+.+. . ...+|....
T Consensus 747 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~ 826 (1284)
T 3g5u_A 747 NSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATG 826 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000000 000000 0 000000000
Q ss_pred -------------------------------------------------------HHHH---------------------
Q 006275 388 -------------------------------------------------------AEKK--------------------- 391 (652)
Q Consensus 388 -------------------------------------------------------~~~~--------------------- 391 (652)
..+.
T Consensus 827 ~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~ 906 (1284)
T 3g5u_A 827 SRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSL 906 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000
Q ss_pred --------------------------------------------------------------------------------
Q 006275 392 -------------------------------------------------------------------------------- 391 (652)
Q Consensus 392 -------------------------------------------------------------------------------- 391 (652)
T Consensus 907 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~ 986 (1284)
T 3g5u_A 907 TREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQ 986 (1284)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------HHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCCe---eeeeceEEEEEcCeEEE
Q 006275 392 --------------LERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDR---LLFNRANLTIERGEKTA 454 (652)
Q Consensus 392 --------------l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~---~vl~~isl~i~~Ge~~~ 454 (652)
.+++.+.-. .++...... ..+...++..+.|+++||+++|+++ ++|+|+||+|++||++|
T Consensus 987 ~~~~~~~~~~~~~a~~ri~~~l~-~~~~~~~~~--~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ 1063 (1284)
T 3g5u_A 987 VSSFAPDYAKATVSASHIIRIIE-KTPEIDSYS--TQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLA 1063 (1284)
T ss_dssp HTSSSCCSTHHHHHHHHHHHHHH-SCCSSSSCC--SSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCCcccccc--cccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEE
Confidence 000000000 000000000 0000112234569999999999753 69999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cceecccccccCCCCCCHHHHHHHhhh--hccHHH
Q 006275 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYFEQNQAEALDLDKTVLETVAEAAE--DWRIDD 522 (652)
Q Consensus 455 i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~~~~~~~~~~~~~tv~e~~~~~~~--~~~~~~ 522 (652)
|+||||||||||+++|+|+++|++|+|.++|.++. .++++|+. ..++.|+.||+..+.. ....++
T Consensus 1064 ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~---~l~~~ti~eNi~~~~~~~~~~~~~ 1140 (1284)
T 3g5u_A 1064 LVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEP---ILFDCSIAENIAYGDNSRVVSYEE 1140 (1284)
T ss_dssp EECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSC---CCCSSBHHHHHTCCCSSCCCCHHH
T ss_pred EECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCC---ccccccHHHHHhccCCCCCCCHHH
Confidence 99999999999999999999999999999998763 24566653 3457899999987542 233455
Q ss_pred HHHHHhhCCCChhhh-----------ccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q 006275 523 IKGLLGRCNFKADML-----------DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY-- 589 (652)
Q Consensus 523 ~~~~L~~~~l~~~~~-----------~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-- 589 (652)
+.+.++..++. +.. .....+|||||||||+|||||+++|+||||||||++||+.+++.+++.|++.
T Consensus 1141 i~~~~~~~~~~-~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~ 1219 (1284)
T 3g5u_A 1141 IVRAAKEANIH-QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE 1219 (1284)
T ss_dssp HHHHHHHHTCH-HHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCcH-HHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCC
Confidence 55555555542 222 2234689999999999999999999999999999999999999999999875
Q ss_pred CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 590 KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 590 ~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
+.|||+||||++++.. ||||++|++|++++ .|++++.++..
T Consensus 1220 ~~tvi~isH~l~~i~~-~dri~vl~~G~i~~-~g~~~~l~~~~ 1260 (1284)
T 3g5u_A 1220 GRTCIVIAHRLSTIQN-ADLIVVIQNGKVKE-HGTHQQLLAQK 1260 (1284)
T ss_dssp SSCEEEECSCTTGGGS-CSEEEEEETBEEEE-EECHHHHHHSC
T ss_pred CCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHhCC
Confidence 4599999999999965 99999999999985 58888877643
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1e-75 Score=660.33 Aligned_cols=432 Identities=24% Similarity=0.317 Sum_probs=327.4
Q ss_pred eEE-EeEEEEeCCe-eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE---------EECCC-------
Q 006275 98 VKL-ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAKS------- 159 (652)
Q Consensus 98 i~v-~~ls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i---------~~~~~------- 159 (652)
.++ +|++|+|+++ .+++++| +|++||+++|+||||||||||+|+|+|+++|++|++ .+.|.
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 6899999876 4899999 999999999999999999999999999999999985 23332
Q ss_pred -----CceEEEEeccCccCC---CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCC
Q 006275 160 -----NMKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (652)
Q Consensus 160 -----~~~i~~v~Q~~~~~~---~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (652)
...+++++|.....+ ..|+.+++...
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---------------------------------------------- 133 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---------------------------------------------- 133 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----------------------------------------------
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----------------------------------------------
Confidence 135788888754322 13666654200
Q ss_pred hhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCe
Q 006275 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVP 308 (652)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~t 308 (652)
....++.++++.+|+. ...++++.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|+ +.|+|
T Consensus 134 --~~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~t 210 (538)
T 1yqt_A 134 --DETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKS 210 (538)
T ss_dssp --CSSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred --hHHHHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 0012355678889996 57899999999999999999999999999999999999999999999888774 35899
Q ss_pred EEEEecCHHHHHhhcCeEEEEcCCeE--EEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchh
Q 006275 309 MVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRAS 386 (652)
Q Consensus 309 vIivsHd~~~l~~~~d~ii~l~~G~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (652)
||+||||++++..+||+|++|+++.. ..+...+..-. .+ ......... ..
T Consensus 211 vi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~-------------------~~---~~~~~~~~~---~~--- 262 (538)
T 1yqt_A 211 VLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRN-------------------GI---NEFLRGYLK---DE--- 262 (538)
T ss_dssp EEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH-------------------HH---HHHHHTEET---TT---
T ss_pred EEEEeCCHHHHHHhCCEEEEEcCcccccccccchhhHHH-------------------HH---HHHhhhccc---hh---
Confidence 99999999999999999999985421 12222222100 00 000000000 00
Q ss_pred HHHHHHHHHHHHhhhcccccccceEEecCCCC--CCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHH
Q 006275 387 SAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKS 464 (652)
Q Consensus 387 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKS 464 (652)
..... .....+.+++.. ..++.+++++|+++.|++. .|+++||+|++||++||+||||||||
T Consensus 263 -------------~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKS 326 (538)
T 1yqt_A 263 -------------NVRFR--PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKT 326 (538)
T ss_dssp -------------TEECS--SSCCCCCCSSGGGSSCCCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHH
T ss_pred -------------hhccc--ccccccccCCcccccCCCeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHH
Confidence 00000 000001111111 1345689999999999764 68999999999999999999999999
Q ss_pred HHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHh-hhh-ccHHHHHHHHhhCCCChhhhccCcC
Q 006275 465 TLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFKADMLDRKVS 542 (652)
Q Consensus 465 TLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~-~~~-~~~~~~~~~L~~~~l~~~~~~~~~~ 542 (652)
||+++|+|+++|++|+|.+. ...+|++|+.. ..+..||.+++... ... .....+.++++.+++. +..++++.
T Consensus 327 TLlk~l~Gl~~p~~G~i~~~---~~i~~v~Q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~ 400 (538)
T 1yqt_A 327 TFVKMLAGVEEPTEGKIEWD---LTVAYKPQYIK--ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVN 400 (538)
T ss_dssp HHHHHHHTSSCCSBCCCCCC---CCEEEECSSCC--CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGG
T ss_pred HHHHHHhCCCCCCCeEEEEC---ceEEEEecCCc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-hhhcCChh
Confidence 99999999999999999862 34567777642 34678998887653 111 2234578899999995 67899999
Q ss_pred CCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeC--C
Q 006275 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG--S 616 (652)
Q Consensus 543 ~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~--g 616 (652)
+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++ |
T Consensus 401 ~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~ 480 (538)
T 1yqt_A 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPG 480 (538)
T ss_dssp GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999999999998764 57999999999999999999999985 5
Q ss_pred EEEeecCChhhHhh
Q 006275 617 NLQDYAGDYNVCFT 630 (652)
Q Consensus 617 ~i~~~~g~~~~~~~ 630 (652)
++. ..|++++...
T Consensus 481 ~~~-~~g~~~~~~~ 493 (538)
T 1yqt_A 481 KYG-RALPPMGMRE 493 (538)
T ss_dssp TEE-EECCCEEHHH
T ss_pred eEe-ecCCHHHHHh
Confidence 554 3577766543
No 5
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.4e-75 Score=665.96 Aligned_cols=434 Identities=24% Similarity=0.320 Sum_probs=331.0
Q ss_pred CceEE--------EeEEEEeCCe-eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE---------EEC
Q 006275 96 SGVKL--------ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKA 157 (652)
Q Consensus 96 ~~i~v--------~~ls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i---------~~~ 157 (652)
.+|++ +|++++|++. .+|+++| +|++||+++|+||||||||||+++|+|+++|++|++ .+.
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred ceEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence 35888 8999999876 4999999 999999999999999999999999999999999985 233
Q ss_pred CC------------CceEEEEeccCccCC---CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHH
Q 006275 158 KS------------NMKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDL 222 (652)
Q Consensus 158 ~~------------~~~i~~v~Q~~~~~~---~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (652)
|. ...+++++|.....+ ..||.||+...
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~------------------------------------- 203 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV------------------------------------- 203 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-------------------------------------
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-------------------------------------
Confidence 32 124778888643222 23777765210
Q ss_pred HHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 006275 223 LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL 302 (652)
Q Consensus 223 ~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L 302 (652)
....++.++++.+|+. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.++.++.++|
T Consensus 204 -----------~~~~~~~~~L~~lgL~-~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L 271 (607)
T 3bk7_A 204 -----------DEVGKFEEVVKELELE-NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI 271 (607)
T ss_dssp -----------CCSSCHHHHHHHTTCT-TGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHcCCC-chhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0012345678888996 6789999999999999999999999999999999999999999999988877
Q ss_pred cc---CCCeEEEEecCHHHHHhhcCeEEEEcCCeE--EEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006275 303 GK---QDVPMVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLG 377 (652)
Q Consensus 303 ~~---~g~tvIivsHd~~~l~~~~d~ii~l~~G~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (652)
++ .|+|||+||||++++..+||+|++|.++.. ..+...+... . .+ ...+....
T Consensus 272 ~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~----~---------------~i---~~~~~~~~ 329 (607)
T 3bk7_A 272 RRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTR----N---------------GI---NEFLQGYL 329 (607)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHH----H---------------HH---HHHHHTEE
T ss_pred HHHHhcCCEEEEEecChHHHHhhCCEEEEECCCccccceeccchhHH----H---------------HH---HHHHhhcc
Confidence 53 489999999999999999999999986421 1122222110 0 00 00010000
Q ss_pred cCccccchhHHHHHHHHHHHHhhhcccccccceEEecCCCC--CCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEE
Q 006275 378 AGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAI 455 (652)
Q Consensus 378 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i 455 (652)
.. . ..... .....+..+++. ..+..+++++|+++.|++. .|+++||+|++||++||
T Consensus 330 ~~-~------------------~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i 387 (607)
T 3bk7_A 330 KD-E------------------NVRFR--PYEIRFTKLSERVDVERETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGI 387 (607)
T ss_dssp TT-T------------------TEECC--SSCCCCCCSTTSCCCCCCEEEEECCEEEECSSC-EEEECCEEEETTCEEEE
T ss_pred hh-h------------------hhhcc--ccccccccCCCcccccCceEEEEeceEEEecce-EEEecccccCCCCEEEE
Confidence 00 0 00000 000011111111 1345689999999999764 68999999999999999
Q ss_pred EcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHh-hhh-ccHHHHHHHHhhCCCC
Q 006275 456 IGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFK 533 (652)
Q Consensus 456 ~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~-~~~-~~~~~~~~~L~~~~l~ 533 (652)
+||||||||||+++|+|+++|++|+|.+. ...+|++|+. ...+..||.+++... ... .....+.++++.+++.
T Consensus 388 ~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 388 VGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYKPQYI--KAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCSBSCCCCC---CCEEEECSSC--CCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred ECCCCCCHHHHHHHHhcCCCCCceEEEEe---eEEEEEecCc--cCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999863 3456777764 334678998887654 111 1234567889999995
Q ss_pred hhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccE
Q 006275 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNR 609 (652)
Q Consensus 534 ~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~dr 609 (652)
+..++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|||
T Consensus 463 -~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adr 541 (607)
T 3bk7_A 463 -DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 541 (607)
T ss_dssp -TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred -hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 6789999999999999999999999999999999999999999999999999864 56999999999999999999
Q ss_pred EEEEeC--CEEEeecCChhhHhh
Q 006275 610 VVEVKG--SNLQDYAGDYNVCFT 630 (652)
Q Consensus 610 vi~l~~--g~i~~~~g~~~~~~~ 630 (652)
|++|++ |++. ..|++++...
T Consensus 542 v~vl~~~~g~~~-~~g~p~~~~~ 563 (607)
T 3bk7_A 542 LIVFEGEPGRHG-RALPPMGMRE 563 (607)
T ss_dssp EEEEEEETTTEE-EECCCEEHHH
T ss_pred EEEEcCCcceEE-ecCCHHHHHh
Confidence 999985 5554 3577776554
No 6
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.6e-71 Score=624.84 Aligned_cols=420 Identities=24% Similarity=0.309 Sum_probs=303.9
Q ss_pred eEEEEeCCeeeeeeeeEE-EECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE-----------EECCCC---------
Q 006275 102 NISKSYKGVTVLKDVTWE-VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-----------IKAKSN--------- 160 (652)
Q Consensus 102 ~ls~~y~~~~vL~~vsl~-i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i-----------~~~~~~--------- 160 (652)
+.+.+|+.+. ++-..|. +++||++||+||||||||||+|+|+|+++|++|+| .+.|..
T Consensus 4 ~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 4 EVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp CEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred CCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 4677886542 3334453 45899999999999999999999999999999988 333321
Q ss_pred ---ceEEEEeccCccC---CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhc
Q 006275 161 ---MKIAFLSQEFEVS---MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~---~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (652)
..+....|..... ...++.+++... .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~------------------------------------------------~ 114 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKI------------------------------------------------D 114 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCCSBHHHHHHHH------------------------------------------------C
T ss_pred hcccchhhccchhhhhhhhccCcHHHHhhcc------------------------------------------------h
Confidence 1234444432111 223554432100 0
Q ss_pred HHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006275 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (652)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (652)
...++.++++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++ .|+|||+|
T Consensus 115 ~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~v 193 (538)
T 3ozx_A 115 ERGKKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193 (538)
T ss_dssp CSSCHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred hHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 012345677888885 678999999999999999999999999999999999999999999999887643 38999999
Q ss_pred ecCHHHHHhhcCeEEEEcCCeEE--EecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHH
Q 006275 313 SHDRAFLDQLCTKIVETEMGVSR--TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~~G~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 390 (652)
|||++++..+||+|+++++|... .+...+..- . . ....+........ .+.
T Consensus 194 sHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~~----~---------------~---~~~~~~g~~~~~~-~~~----- 245 (538)
T 3ozx_A 194 DHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAAR----V---------------G---INNFLKGYLPAEN-MKI----- 245 (538)
T ss_dssp CSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH----H---------------H---HHHHHHTEETTTT-EEC-----
T ss_pred EeChHHHHhhCCEEEEecCCcccccccchhhhHH----H---------------H---HHHHHhhhchhhh-hhc-----
Confidence 99999999999999999864321 112222100 0 0 0000110000000 000
Q ss_pred HHHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHH
Q 006275 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470 (652)
Q Consensus 391 ~l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l 470 (652)
+ ......... ...........+.+++++|+++.|++ ..|..+||+|++||++||+||||||||||+++|
T Consensus 246 -----r---~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l 314 (538)
T 3ozx_A 246 -----R---PDEIKFMLK--EVSDLDLSKDLKTKMKWTKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARIL 314 (538)
T ss_dssp -----S---SSCCCCSCC------------CCEEEEECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHH
T ss_pred -----c---chhhhcccc--ccccccccccccceEEEcceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHH
Confidence 0 000000000 00000001234567999999999976 457888999999999999999999999999999
Q ss_pred hCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhh---ccHHHHHHHHhhCCCChhhhccCcCCCCHH
Q 006275 471 MGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547 (652)
Q Consensus 471 ~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgG 547 (652)
+|+++|++|+|.+++.. .++++|.. ...+..||.+++...... .....+.++++.+++. +..++++.+||||
T Consensus 315 ~Gl~~p~~G~i~~~~~~--i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGG 389 (538)
T 3ozx_A 315 VGEITADEGSVTPEKQI--LSYKPQRI--FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-RLLESNVNDLSGG 389 (538)
T ss_dssp TTSSCCSBCCEESSCCC--EEEECSSC--CCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-GCTTSBGGGCCHH
T ss_pred hCCCCCCCcEEEECCee--eEeechhc--ccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-HHhcCChhhCCHH
Confidence 99999999999988754 34666543 234578999998764321 1223467889999994 6789999999999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeC
Q 006275 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG 615 (652)
Q Consensus 548 qrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~ 615 (652)
|||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++
T Consensus 390 q~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 390 ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999998764 56999999999999999999999986
No 7
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-69 Score=613.41 Aligned_cols=455 Identities=22% Similarity=0.331 Sum_probs=304.9
Q ss_pred eEEEEeCCee-eeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc-eEEEEeccCccCCCCCHH
Q 006275 102 NISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQEFEVSMSRTVR 179 (652)
Q Consensus 102 ~ls~~y~~~~-vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~-~i~~v~Q~~~~~~~~Tv~ 179 (652)
|++++|+... .|++++ .+++||++||+||||||||||+|+|+|+++|++|+|....... .+++ +....+.
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~-------~~g~~~~ 153 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKY-------FRGSELQ 153 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHH-------TTTSTHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhhe-------ecChhhh
Confidence 4688887653 677776 6899999999999999999999999999999999873110000 0000 0000000
Q ss_pred HHHHHhhHHHHHH---HHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCC
Q 006275 180 EEFMSAFKEEMEI---AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (652)
Q Consensus 180 e~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (652)
..+.......... ....+.+..... .....+..++ .. .......++.++++.+|+. ...+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~l-------~~----~~~~~~~~~~~~l~~~gl~-~~~~~~ 218 (608)
T 3j16_B 154 NYFTKMLEDDIKAIIKPQYVDNIPRAIK---GPVQKVGELL-------KL----RMEKSPEDVKRYIKILQLE-NVLKRD 218 (608)
T ss_dssp HHHHHHHHTSCCCEEECCCTTTHHHHCS---SSSSHHHHHH-------HH----HCCSCHHHHHHHHHHHTCT-GGGGSC
T ss_pred hhhhHHHHHhhhhhhchhhhhhhhhhhc---chhhHHHHHH-------hh----hhhhHHHHHHHHHHHcCCc-chhCCC
Confidence 0000000000000 000000000000 0000000000 00 0011235678889999996 678999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEEcCCe
Q 006275 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (652)
Q Consensus 257 ~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ii~l~~G~ 333 (652)
+.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.|+|||+||||++++..+||+|++|.++.
T Consensus 219 ~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp TTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred hHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999999999999999999999999888764 458999999999999999999999998654
Q ss_pred EE--EecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhhhcccccccceE
Q 006275 334 SR--TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411 (652)
Q Consensus 334 ~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 411 (652)
.. ....+++. ... . ...+...... . ... .......
T Consensus 299 ~~~~~~~~~~~~-~~~------------------~---~~~~~~~~~~------------------~-~~~--~~~~~~~ 335 (608)
T 3j16_B 299 SVYGVVTLPASV-REG------------------I---NIFLDGHIPA------------------E-NLR--FRTEALQ 335 (608)
T ss_dssp TTEEEECCCEEH-HHH------------------H---HHHHHTEETT------------------T-TEE--CSSSCCC
T ss_pred cccceecCchhH-HHH------------------H---HHhhccccch------------------h-hhc--ccccccc
Confidence 21 01111110 000 0 0000000000 0 000 0000000
Q ss_pred EecCCCCCCCCcEEEEEeeeeEeCC-eeeeeceEEEEEcC-----eEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECc
Q 006275 412 IRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERG-----EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (652)
Q Consensus 412 ~~~p~~~~~~~~~i~~~~v~~~y~~-~~vl~~isl~i~~G-----e~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g 485 (652)
+.... ......+...+++++|++ ..+++++||++.+| |++||+||||||||||+++|+|+++|++|+.. .
T Consensus 336 ~~~~~--~~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-~- 411 (608)
T 3j16_B 336 FRIAD--ATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI-P- 411 (608)
T ss_dssp CCCSS--SSCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-C-
T ss_pred ccccc--cccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-c-
Confidence 00000 000111222567888976 46899999999999 78999999999999999999999999999741 1
Q ss_pred eecccceecccccccCCCCCCHHHHHHHhhh--hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
....++++|.. ...+..|+.+++..... ......+.++++.+++. +..++++.+|||||||||+|||||+.+|+
T Consensus 412 -~~~i~~~~q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGqkQRv~iAraL~~~p~ 487 (608)
T 3j16_B 412 -KLNVSMKPQKI--APKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAIVLALGIPAD 487 (608)
T ss_dssp -SCCEEEECSSC--CCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST-TTSSSBSSSCCHHHHHHHHHHHHTTSCCS
T ss_pred -CCcEEEecccc--cccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 12235566543 23456799998765322 12334567788999985 67899999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeC--CEEEeecCChhhHhhh
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG--SNLQDYAGDYNVCFTS 631 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~--g~i~~~~g~~~~~~~~ 631 (652)
||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++ |++. ..|++++.+..
T Consensus 488 lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~-~~g~p~~~~~~ 560 (608)
T 3j16_B 488 IYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA-HARAPESLLTG 560 (608)
T ss_dssp EEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEE-ECCCCEEHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEE-ecCChHHHhhh
Confidence 99999999999999999999988764 57999999999999999999999986 7775 56887766543
No 8
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.3e-68 Score=613.55 Aligned_cols=434 Identities=21% Similarity=0.286 Sum_probs=287.7
Q ss_pred CeeeeeeeeEEEECCCEEEEECCCCccHHHHH---------------------HHHHcCCCCCCcE-------EEECCCC
Q 006275 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQL---------------------RIIAGQEEPDSGN-------VIKAKSN 160 (652)
Q Consensus 109 ~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl---------------------~~L~G~~~p~~G~-------i~~~~~~ 160 (652)
...+|+||||+|++||++||+||||||||||+ +++.|+..|+.|. |.+++..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 8999999998554 4444321
Q ss_pred ------ceEEEEeccCcc-------------------CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHh
Q 006275 161 ------MKIAFLSQEFEV-------------------SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215 (652)
Q Consensus 161 ------~~i~~v~Q~~~~-------------------~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (652)
..++|++|.+.. +..+||.||+....... .... .
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~--~~~~-------------~------ 168 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLE--LTEK-------------E------ 168 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccc--cchh-------------h------
Confidence 234555554322 13446666653210000 0000 0
Q ss_pred hHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHH
Q 006275 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLD 293 (652)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~--iLLLDEPts~LD~~ 293 (652)
.........++.+. ..+++.+|+.....++++.+|||||||||+|||||+.+|+ +|||||||+|||+.
T Consensus 169 ---------~~~~~~~~~~~~~~-~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 169 ---------AQIARLILREIRDR-LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp -------------------CHHH-HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred ---------hHHHHHHHHHHHHH-HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 00000000011112 2458888997545789999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEE------cCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHH
Q 006275 294 TIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQR 364 (652)
Q Consensus 294 ~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ii~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (652)
++.++.++|+ +.|.|||+||||++++. .||+|++| ++|++ .+.|+++++.......
T Consensus 239 ~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i-~~~g~~~~~~~~~~~~------------- 303 (670)
T 3ux8_A 239 DNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEV-VAAGTPEEVMNDPNSL------------- 303 (670)
T ss_dssp GHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSE-EEEECHHHHHTCTTCH-------------
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEecccccccCCEE-EEecCHHHHhcCchhH-------------
Confidence 9999988764 46899999999999875 59999999 77776 5778766543211000
Q ss_pred HHHHHHHHHHHhccCccccchhHHHHHHHHHHHHhhhcccccccceEEecCC-CCCCCCcEEEEEeeeeEeCCeeeeece
Q 006275 365 EIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE-RGRSGRSVVTIKNLEFGYEDRLLFNRA 443 (652)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~i~~~~v~~~y~~~~vl~~i 443 (652)
... .+.. ... ...+. ........+++.+.. ..+|+||
T Consensus 304 ----~~~---~~~~-----------------------~~~-------~~~~~~~~~~~~~~~~~~~~~-----~~~L~~v 341 (670)
T 3ux8_A 304 ----TGQ---YLSG-----------------------KKF-------IPIPAERRRPDGRWLEVVGAR-----EHNLKNV 341 (670)
T ss_dssp ----HHH---HHTT-----------------------SSC-------CCCCSSCCCCCSCEEEEEEEC-----STTCCSE
T ss_pred ----HHH---Hhcc-----------------------ccc-------cccccccccccccceeecCcc-----ccccccc
Confidence 000 0000 000 00010 011123345555543 4589999
Q ss_pred EEEEEcCeEEEEEcCCCCcHHHHHHHHh----------------------CCCCCCeeEEEECceeccc----------c
Q 006275 444 NLTIERGEKTAIIGPNGCGKSTLLKLIM----------------------GLEKPRGGEVLLGEHNVLP----------N 491 (652)
Q Consensus 444 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~----------------------g~~~p~~G~i~~~g~~~~~----------~ 491 (652)
||+|++||++||+||||||||||+++|+ |+..+ .|.|.+++.++.. +
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 420 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRSNPATYTG 420 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTCCHHHHHT
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCcchhhhhh
Confidence 9999999999999999999999998754 33333 3567776654310 0
Q ss_pred eecc-----------------------c------------------------------------------------cccc
Q 006275 492 YFEQ-----------------------N------------------------------------------------QAEA 500 (652)
Q Consensus 492 ~~~~-----------------------~------------------------------------------------~~~~ 500 (652)
.+.+ + +...
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (670)
T 3ux8_A 421 VFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIA 500 (670)
T ss_dssp HHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHH
T ss_pred hhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecCCCHH
Confidence 0000 0 0000
Q ss_pred CCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC---CeEEEeCCCCCCCHH
Q 006275 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIP 577 (652)
Q Consensus 501 ~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p---~lLlLDEPt~~LD~~ 577 (652)
....+|+.+|+.+........+..+.+..+++.....++++.+|||||||||+|||||+.+| +||||||||+|||+.
T Consensus 501 ~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~ 580 (670)
T 3ux8_A 501 EVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVD 580 (670)
T ss_dssp HHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHH
T ss_pred HHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHH
Confidence 01146788888765433333456778888998644568999999999999999999999887 599999999999999
Q ss_pred HHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEE------eCCEEEeecCChhhHhhhcC
Q 006275 578 SKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNVCFTSFS 633 (652)
Q Consensus 578 ~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l------~~g~i~~~~g~~~~~~~~~~ 633 (652)
+...+.++|+++ +.|||+||||++++. .||||++| ++|+|+ ..|++++..+...
T Consensus 581 ~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~-~~g~~~~~~~~~~ 643 (670)
T 3ux8_A 581 DIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIV-AVGTPEEVAEVKE 643 (670)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEE-EEECHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEE-EecCHHHHHhCCc
Confidence 999999998765 569999999999885 69999999 899998 5688888765433
No 9
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=2.4e-51 Score=477.94 Aligned_cols=339 Identities=22% Similarity=0.257 Sum_probs=250.6
Q ss_pred hcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHH---ccCCC
Q 006275 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYL---GKQDV 307 (652)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L---~~~g~ 307 (652)
+++..++. .+..+|+.....++++.+|||||||||+||++|+.+|+ +|||||||+|||+...++|.++| ++.|.
T Consensus 354 ~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~ 432 (842)
T 2vf7_A 354 ADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGN 432 (842)
T ss_dssp HHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCC
Confidence 35666776 57899996434799999999999999999999999994 99999999999999999998865 56799
Q ss_pred eEEEEecCHHHHHhhcCeEEEE------cCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 006275 308 PMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN 381 (652)
Q Consensus 308 tvIivsHd~~~l~~~~d~ii~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (652)
|||+||||++++ ..||+|++| ++|.+ .+.|+++++....... ... .+.+.
T Consensus 433 TVIvVeHdl~~l-~~aD~ii~lgpgaG~~~G~i-v~~g~~~~~~~~~~~~-----------------~~~---~l~~~-- 488 (842)
T 2vf7_A 433 SLFVVEHDLDVI-RRADWLVDVGPEAGEKGGEI-LYSGPPEGLKHVPESQ-----------------TGQ---YLFAD-- 488 (842)
T ss_dssp EEEEECCCHHHH-TTCSEEEEECSSSGGGCCSE-EEEECGGGGGGCTTCH-----------------HHH---HHHTC--
T ss_pred EEEEEcCCHHHH-HhCCEEEEeCCCcccCCCEE-EEecCHHHHHhchHHH-----------------HHH---Hhhhc--
Confidence 999999999987 579999999 45655 6889988764321000 000 00000
Q ss_pred ccchhHHHHHHHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCC
Q 006275 382 SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (652)
Q Consensus 382 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGs 461 (652)
...+ +.....+..+|+++|+++ ..|+||||+|++||++||+|+|||
T Consensus 489 -------------------~~~~----------~~~~~~~~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGS 534 (842)
T 2vf7_A 489 -------------------RHTE----------PHTPREPAGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGS 534 (842)
T ss_dssp -------------------CCCC----------CCCCCCCSCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTS
T ss_pred -------------------cccc----------ccccCCCCceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCc
Confidence 0000 000112356799999975 269999999999999999999999
Q ss_pred cHHHHHHH-HhCCC-------CC------------------Cee-------EEEECceecc--cc---------------
Q 006275 462 GKSTLLKL-IMGLE-------KP------------------RGG-------EVLLGEHNVL--PN--------------- 491 (652)
Q Consensus 462 GKSTLl~~-l~g~~-------~p------------------~~G-------~i~~~g~~~~--~~--------------- 491 (652)
|||||++. |+|++ +| .+| .|.+++.++. +.
T Consensus 535 GKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~ 614 (842)
T 2vf7_A 535 GKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRK 614 (842)
T ss_dssp SHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHH
Confidence 99999996 66543 23 466 6778776541 00
Q ss_pred ----------------eeccccc----------------ccC------------------------CCCCCHHHH-----
Q 006275 492 ----------------YFEQNQA----------------EAL------------------------DLDKTVLET----- 510 (652)
Q Consensus 492 ----------------~~~~~~~----------------~~~------------------------~~~~tv~e~----- 510 (652)
.|..|.. ..+ ....++.|+
T Consensus 615 ~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv 694 (842)
T 2vf7_A 615 LFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTV 694 (842)
T ss_dssp HHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBH
T ss_pred HHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccH
Confidence 0111100 000 012344444
Q ss_pred ---HHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccC---CCeEEEeCCCCCCCHHHHHHHHH
Q 006275 511 ---VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP---STLLVLDEPTNHLDIPSKEMLEE 584 (652)
Q Consensus 511 ---~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~---p~lLlLDEPt~~LD~~~~~~l~~ 584 (652)
+.+.........+.++|+.+|+.....++++.+|||||||||+|||+|+.+ |+||||||||+|||+.++..+.+
T Consensus 695 ~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~ 774 (842)
T 2vf7_A 695 DEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR 774 (842)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHH
T ss_pred HHHHHHhhcchHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 333222122345778999999964346899999999999999999999996 79999999999999999999999
Q ss_pred HHHhc---CceEEEEecCHHHHHhhccEEEEE------eCCEEEeecCChhhHhhhc
Q 006275 585 AISEY---KGTVITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 585 ~l~~~---~~tvi~vsHd~~~i~~~~drvi~l------~~g~i~~~~g~~~~~~~~~ 632 (652)
+|+++ +.|||+||||++++ ..||||++| ++|+|+ ..|+++++.+..
T Consensus 775 lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el~~~~ 829 (842)
T 2vf7_A 775 QLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEVAQAA 829 (842)
T ss_dssp HHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEE-EEECHHHHTTCT
T ss_pred HHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHHHhCc
Confidence 98754 57999999999999 679999999 689987 468888876543
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-50 Score=474.72 Aligned_cols=335 Identities=21% Similarity=0.297 Sum_probs=244.2
Q ss_pred HHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEec
Q 006275 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISH 314 (652)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsH 314 (652)
.+.|..+|+.....++++.+|||||||||+|||||+++|+ +|||||||+|||+...++|.++|+ +.|.|||+|||
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECC
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4567889996445789999999999999999999999887 999999999999999999988864 46899999999
Q ss_pred CHHHHHhhcCeEEEE------cCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhHH
Q 006275 315 DRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSA 388 (652)
Q Consensus 315 d~~~l~~~~d~ii~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (652)
|++++.. ||+|++| ++|++ .+.|+++++....... ..... +.+
T Consensus 525 d~~~~~~-aD~ii~lgpgag~~~G~i-v~~G~~~e~~~~~~~~----------------~~~~~---l~~---------- 573 (916)
T 3pih_A 525 DEEVIRN-ADHIIDIGPGGGTNGGRV-VFQGTVDELLKNPDSS----------------LTGEY---LSG---------- 573 (916)
T ss_dssp CHHHHHT-CSEEEEEESSSGGGCSEE-EEEECHHHHHHSCTTC----------------HHHHH---HHS----------
T ss_pred CHHHHHh-CCEEEEEcCCcccCCCEE-EEeechhhhhcCchhc----------------chhhh---hhc----------
Confidence 9999865 9999999 66776 6889987764321000 00000 000
Q ss_pred HHHHHHHHHHhhhcccccccceEEecCCCCCCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHH-
Q 006275 389 EKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL- 467 (652)
Q Consensus 389 ~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl- 467 (652)
... +..+.........+++++++ ...|+||||+|++|++++|+|+||||||||+
T Consensus 574 -------------~~~-------~~~~~~~~~~~~~l~v~~~~-----~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 574 -------------KRK-------ITVNKTRRLPYASLKIKGVR-----HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp -------------SSC-------CCCCSSCCCCSSEEEEEEEC-----STTCCSEEEEEESSSEEEEECSTTSSHHHHHH
T ss_pred -------------ccc-------cccccccccccceEEEeeec-----cccccccceEEcCCcEEEEEccCCCChhhhHH
Confidence 000 00011111123347777764 3469999999999999999999999999997
Q ss_pred --------HHHhCCCCCC------ee------EEEECceecc--c-----------------------------------
Q 006275 468 --------KLIMGLEKPR------GG------EVLLGEHNVL--P----------------------------------- 490 (652)
Q Consensus 468 --------~~l~g~~~p~------~G------~i~~~g~~~~--~----------------------------------- 490 (652)
+++.+...+. +| .+.++..++. +
T Consensus 629 ~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs 708 (916)
T 3pih_A 629 ETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFS 708 (916)
T ss_dssp HTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGC
T ss_pred HHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccchhhhHHHHHHHhccchHHHhccccccccc
Confidence 4444443332 33 2333332210 0
Q ss_pred --------------ceeccccc------------------------------ccCCCCCCHHHHHHHhhhhccHHHHHHH
Q 006275 491 --------------NYFEQNQA------------------------------EALDLDKTVLETVAEAAEDWRIDDIKGL 526 (652)
Q Consensus 491 --------------~~~~~~~~------------------------------~~~~~~~tv~e~~~~~~~~~~~~~~~~~ 526 (652)
++..+... ......+|+.+++.+........+..+.
T Consensus 709 ~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~ 788 (916)
T 3pih_A 709 FNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQV 788 (916)
T ss_dssp TTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHH
T ss_pred ccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHHH
Confidence 00000000 0000135677777665443344567789
Q ss_pred HhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCH
Q 006275 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDR 600 (652)
Q Consensus 527 L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~ 600 (652)
|..+|+.....++++.+|||||||||+|||||+++| +||||||||+|||+.+++.|.++|+++ +.|||+||||+
T Consensus 789 L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL 868 (916)
T 3pih_A 789 LHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL 868 (916)
T ss_dssp HHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999999654568899999999999999999999875 799999999999999999999998764 56999999999
Q ss_pred HHHHhhccEEEEE------eCCEEEeecCChhhHhhhc
Q 006275 601 YFVKQIVNRVVEV------KGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 601 ~~i~~~~drvi~l------~~g~i~~~~g~~~~~~~~~ 632 (652)
+++.. ||+|++| ++|+|+ ..|++++..+..
T Consensus 869 ~~i~~-ADrIivLgp~gg~~~G~Iv-~~Gtpeel~~~~ 904 (916)
T 3pih_A 869 DVIKN-ADHIIDLGPEGGKEGGYIV-ATGTPEEIAKNP 904 (916)
T ss_dssp HHHTT-CSEEEEEESSSGGGCCEEE-EEESHHHHHSCT
T ss_pred HHHHh-CCEEEEecCCCCCCCCEEE-EEcCHHHHHhCC
Confidence 99865 9999999 889998 569999887654
No 11
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=3.7e-50 Score=467.96 Aligned_cols=338 Identities=20% Similarity=0.266 Sum_probs=246.7
Q ss_pred cHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHH---ccCCCe
Q 006275 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVP 308 (652)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L---~~~g~t 308 (652)
++..++ +.|..+||....+++++.+|||||||||+||++|..+| ++|||||||+|||+...++|.+.| ++.|.|
T Consensus 480 ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~T 558 (972)
T 2r6f_A 480 EIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNT 558 (972)
T ss_dssp HHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred HHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 445565 45899999643479999999999999999999999985 999999999999999999998775 467999
Q ss_pred EEEEecCHHHHHhhcCeEEEE------cCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q 006275 309 MVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382 (652)
Q Consensus 309 vIivsHd~~~l~~~~d~ii~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (652)
||+|+||++++. .||+|++| ++|.+ ++.|+++++....... ... .+.+
T Consensus 559 VIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~i-v~~G~~~e~~~~~~sl-----------------t~~---~l~g---- 612 (972)
T 2r6f_A 559 LIVVEHDEDTML-AADYLIDIGPGAGIHGGEV-VAAGTPEEVMNDPNSL-----------------TGQ---YLSG---- 612 (972)
T ss_dssp EEEECCCHHHHH-SCSEEEEECSSSGGGCCSE-EEEECTTTTTTCTTCT-----------------THH---HHHT----
T ss_pred EEEEecCHHHHH-hCCEEEEeCCCccCCCCEE-EEecCHHHHHhhhHHH-----------------HHH---HhcC----
Confidence 999999999985 69999999 45655 6889887654210000 000 0000
Q ss_pred cchhHHHHHHHHHHHHhhhcccccccceEEecCCCC-CCCCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCC
Q 006275 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG-RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (652)
Q Consensus 383 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGs 461 (652)
... +..|... .+....|++++++. ..|+||||+|+.||++||+|+|||
T Consensus 613 -------------------~~~-------~~~~~~~~~~~~~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGS 661 (972)
T 2r6f_A 613 -------------------KKF-------IPIPAERRRPDGRWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGS 661 (972)
T ss_dssp -------------------SSC-------CCCCSSCCCCCSCEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTS
T ss_pred -------------------Ccc-------ccCccccccccceEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCC
Confidence 000 0001111 12245799999973 369999999999999999999999
Q ss_pred cHHHHHHHHh-CCC-------CCCee-------------EEEECceecc--c---------------------------c
Q 006275 462 GKSTLLKLIM-GLE-------KPRGG-------------EVLLGEHNVL--P---------------------------N 491 (652)
Q Consensus 462 GKSTLl~~l~-g~~-------~p~~G-------------~i~~~g~~~~--~---------------------------~ 491 (652)
|||||+++|+ |.+ .+..| .|.+++.++. + +
T Consensus 662 GKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~G 741 (972)
T 2r6f_A 662 GKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRG 741 (972)
T ss_dssp SHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhc
Confidence 9999999853 221 11223 3667765541 0 0
Q ss_pred eecccccc--------------------cCC--------------------------------CCCCHHHHHHHhhhhcc
Q 006275 492 YFEQNQAE--------------------ALD--------------------------------LDKTVLETVAEAAEDWR 519 (652)
Q Consensus 492 ~~~~~~~~--------------------~~~--------------------------------~~~tv~e~~~~~~~~~~ 519 (652)
|..+.... .+. ..+|+.+++.+......
T Consensus 742 y~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~ 821 (972)
T 2r6f_A 742 YKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPK 821 (972)
T ss_dssp CCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHH
T ss_pred ccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchh
Confidence 11110000 000 13456666654322222
Q ss_pred HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceE
Q 006275 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTV 593 (652)
Q Consensus 520 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv 593 (652)
..+..++|+.+|+.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..+.++|+++ +.||
T Consensus 822 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TV 901 (972)
T 2r6f_A 822 IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTV 901 (972)
T ss_dssp HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 3345688999999643678999999999999999999999865 999999999999999999999998754 5699
Q ss_pred EEEecCHHHHHhhccEEEEE------eCCEEEeecCChhhHhhh
Q 006275 594 ITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 594 i~vsHd~~~i~~~~drvi~l------~~g~i~~~~g~~~~~~~~ 631 (652)
|+||||++++. .||||++| ++|+++ ..|+++++...
T Consensus 902 IvisHdl~~i~-~aDrIivL~p~gG~~~G~Iv-~~g~~~el~~~ 943 (972)
T 2r6f_A 902 LVIEHNLDVIK-TADYIIDLGPEGGDRGGQIV-AVGTPEEVAEV 943 (972)
T ss_dssp EEECCCHHHHT-TCSEEEEECSSSTTSCCSEE-EEESHHHHHTC
T ss_pred EEEcCCHHHHH-hCCEEEEEcCCCCCCCCEEE-EecCHHHHHhC
Confidence 99999999984 79999999 689987 46888887654
No 12
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.5e-49 Score=464.42 Aligned_cols=338 Identities=22% Similarity=0.268 Sum_probs=243.5
Q ss_pred cHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccC--CCeEEEeCCCCCCCHHHHHHHHHHH---ccCCCe
Q 006275 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD--PDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVP 308 (652)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~--p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~t 308 (652)
++..++ +.|..+|+.....++++.+|||||||||+||++|..+ |++|||||||+|||+...++|.++| ++.|.|
T Consensus 497 ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~T 575 (993)
T 2ygr_A 497 EIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNT 575 (993)
T ss_dssp HHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCE
Confidence 345555 3578899863347999999999999999999999998 5899999999999999999998775 457999
Q ss_pred EEEEecCHHHHHhhcCeEEEE------cCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q 006275 309 MVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382 (652)
Q Consensus 309 vIivsHd~~~l~~~~d~ii~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (652)
||+||||++++. .||+|++| ++|.+ ++.|+++++....... ... .+.+.
T Consensus 576 VIvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~i-v~~G~~~e~~~~~~~l-----------------t~~---~l~g~--- 630 (993)
T 2ygr_A 576 LIVVEHDEDTIE-HADWIVDIGPGAGEHGGRI-VHSGPYDELLRNKDSI-----------------TGA---YLSGR--- 630 (993)
T ss_dssp EEEECCCHHHHH-TCSEEEEECSSSGGGCCSC-CEEECHHHHHHCTTCH-----------------HHH---HHHTS---
T ss_pred EEEECCCHHHHH-hCCEEEEecCccccCCCEE-EEeeCHHHhhhhhHHH-----------------HHH---HhccC---
Confidence 999999999985 79999999 45555 6889988765421100 000 00000
Q ss_pred cchhHHHHHHHHHHHHhhhcccccccceEEecCCCCC-CC-CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCC
Q 006275 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGR-SG-RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460 (652)
Q Consensus 383 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~p~~~~-~~-~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NG 460 (652)
.... .|.... +. ...|++++++. .+|+||||+|++|+++||+|+||
T Consensus 631 ----------------~~~~-----------~~~~~~~~~~~~~L~v~~l~~-----~~Lk~Vsl~I~~GeivaI~G~nG 678 (993)
T 2ygr_A 631 ----------------ESIE-----------IPAIRRSVDPRRQLTVVGARE-----HNLRGIDVSFPLGVLTSVTGVSG 678 (993)
T ss_dssp ----------------SCCC-----------CCSSCCCCCSSSEEEEEEECS-----TTCCSEEEEEESSSEEEEECSTT
T ss_pred ----------------cccc-----------CccccccCCCCceEEEecCcc-----ccccCceEEECCCCEEEEEcCCC
Confidence 0000 011000 11 35799999863 36999999999999999999999
Q ss_pred CcHHHHHHHHh-C----CCC---CCeeE-------------EEECceecc--c---------------------------
Q 006275 461 CGKSTLLKLIM-G----LEK---PRGGE-------------VLLGEHNVL--P--------------------------- 490 (652)
Q Consensus 461 sGKSTLl~~l~-g----~~~---p~~G~-------------i~~~g~~~~--~--------------------------- 490 (652)
||||||+++|+ | .+. +..|. |.+++.++. +
T Consensus 679 SGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~ 758 (993)
T 2ygr_A 679 SGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVR 758 (993)
T ss_dssp SSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHh
Confidence 99999999853 2 221 23343 334433321 0
Q ss_pred ceecccc--------------------cccCC------------------------C--------CCCHHHHHHHhhhhc
Q 006275 491 NYFEQNQ--------------------AEALD------------------------L--------DKTVLETVAEAAEDW 518 (652)
Q Consensus 491 ~~~~~~~--------------------~~~~~------------------------~--------~~tv~e~~~~~~~~~ 518 (652)
+|..+.. +..+. . .+|+.+++.+.....
T Consensus 759 gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~ 838 (993)
T 2ygr_A 759 GYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIA 838 (993)
T ss_dssp TCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCH
T ss_pred cccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcch
Confidence 0110100 00000 0 235555554432222
Q ss_pred cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---Cce
Q 006275 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIPSKEMLEEAISEY---KGT 592 (652)
Q Consensus 519 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~t 592 (652)
......++|+.+|+.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+++ +.|
T Consensus 839 ~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~T 918 (993)
T 2ygr_A 839 GVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNT 918 (993)
T ss_dssp HHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 23345678999999543678999999999999999999999865 999999999999999999999998754 569
Q ss_pred EEEEecCHHHHHhhccEEEEE------eCCEEEeecCChhhHhhh
Q 006275 593 VITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 593 vi~vsHd~~~i~~~~drvi~l------~~g~i~~~~g~~~~~~~~ 631 (652)
||+||||++++ ..||||++| ++|+++ ..|+++++.+.
T Consensus 919 VIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv-~~G~~~el~~~ 961 (993)
T 2ygr_A 919 VIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVV-AQGTPEDVAAV 961 (993)
T ss_dssp EEEECCCHHHH-TTCSEEEEEESSSTTSCSEEE-EEECHHHHHHC
T ss_pred EEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEE-EecCHHHHHhC
Confidence 99999999998 579999999 689987 56888887654
No 13
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.9e-47 Score=404.45 Aligned_cols=211 Identities=25% Similarity=0.421 Sum_probs=182.2
Q ss_pred CCCceEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------
Q 006275 94 ISSGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------- 160 (652)
Q Consensus 94 ~~~~i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------- 160 (652)
..++|+++|++|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 3457999999999963 469999999999999999999999999999999999999999999998753
Q ss_pred ----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHH
Q 006275 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (652)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (652)
.+|||++|++.+++..||+||+...... ......+..
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~---------------------------------------~~~~~~~~~ 141 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---------------------------------------DNTPKDEVK 141 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH---------------------------------------SCCCHHHHH
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHH
Confidence 2599999999998899999998632110 001222345
Q ss_pred HHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEE
Q 006275 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVII 312 (652)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIiv 312 (652)
+++.++|+.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.|+|||+|
T Consensus 142 ~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~v 220 (366)
T 3tui_C 142 RRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLI 220 (366)
T ss_dssp HHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6788899999996 67899999999999999999999999999999999999999999999988874 359999999
Q ss_pred ecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 313 sHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|||++.+..+||||++|++|++ ...|+..++.
T Consensus 221 THdl~~~~~~aDrv~vl~~G~i-v~~g~~~ev~ 252 (366)
T 3tui_C 221 THEMDVVKRICDCVAVISNGEL-IEQDTVSEVF 252 (366)
T ss_dssp ESCHHHHHHHCSEEEEEETTEE-EECCBHHHHH
T ss_pred ecCHHHHHHhCCEEEEEECCEE-EEEcCHHHHH
Confidence 9999999999999999999998 4778876654
No 14
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.6e-47 Score=405.64 Aligned_cols=208 Identities=26% Similarity=0.378 Sum_probs=181.8
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------ceEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIA 164 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------~~i~ 164 (652)
+|+++|++|+|++.++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 5999999999999999999999999999999999999999999999999999999999998742 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
||+|++.+++.+||+||+...... ......+..+++.++++
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~ 124 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGN---------------------------------------GKGRTAQERQRIEAMLE 124 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTT---------------------------------------SSCCSHHHHHHHHHHHH
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHH---------------------------------------cCCChHHHHHHHHHHHH
Confidence 999999998999999998643210 00112234567788899
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHH
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLD 320 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~ 320 (652)
.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.| ++.|+|||+||||++++.
T Consensus 125 ~~gL~-~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~ 203 (359)
T 3fvq_A 125 LTGIS-ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEAL 203 (359)
T ss_dssp HHTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH
T ss_pred HcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 99996 6889999999999999999999999999999999999999999998887643 457999999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
.+||||++|++|++ ...|+..++.
T Consensus 204 ~~aDri~vl~~G~i-~~~g~~~el~ 227 (359)
T 3fvq_A 204 QYADRIAVMKQGRI-LQTASPHELY 227 (359)
T ss_dssp HHCSEEEEEETTEE-EEEECHHHHH
T ss_pred HHCCEEEEEECCEE-EEEeCHHHHH
Confidence 99999999999998 4678876654
No 15
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.1e-47 Score=392.28 Aligned_cols=210 Identities=22% Similarity=0.380 Sum_probs=179.8
Q ss_pred CceEEEeEEEEeCC-eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc------------e
Q 006275 96 SGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (652)
Q Consensus 96 ~~i~v~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~------------~ 162 (652)
++|+++|++|+|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 46999999999975 4599999999999999999999999999999999999999999999998532 5
Q ss_pred EEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 163 i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
|||++|+|. .++..||+||+...... ......+..+++.+
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~ 126 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVN---------------------------------------MKLPEDEIRKRVDN 126 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHT---------------------------------------SCCCHHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 999999973 34578999998632100 00112234566778
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~ 317 (652)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||+||||++
T Consensus 127 ~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 127 ALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp HHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred HHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 89999995 67899999999999999999999999999999999999999999999988764 34899999999999
Q ss_pred HHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
++..+||+|++|++|++ .+.|+..++..
T Consensus 206 ~~~~~~drv~~l~~G~i-~~~g~~~~~~~ 233 (275)
T 3gfo_A 206 IVPLYCDNVFVMKEGRV-ILQGNPKEVFA 233 (275)
T ss_dssp SGGGGCSEEEEEETTEE-EEEECHHHHTH
T ss_pred HHHHhCCEEEEEECCEE-EEECCHHHHhc
Confidence 99999999999999998 47788777654
No 16
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.3e-46 Score=386.30 Aligned_cols=210 Identities=24% Similarity=0.411 Sum_probs=179.6
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc------------eE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KI 163 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~------------~i 163 (652)
++|+++|++++|+++++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 369999999999988999999999999999999999999999999999999999999999987432 49
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
||++|++.+++..||+||+...... +. ........+++.+++
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~--------------~~------------------------~~~~~~~~~~~~~~l 144 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMK--------------VR------------------------KWPREKAEAKAMELL 144 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHH--------------TS------------------------CCCHHHHHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHH--------------Hc------------------------CCCHHHHHHHHHHHH
Confidence 9999999887888999998532100 00 001112234567888
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (652)
+.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||+||||++++.
T Consensus 145 ~~~~L~-~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~ 223 (263)
T 2olj_A 145 DKVGLK-DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAR 223 (263)
T ss_dssp HHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred HHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 999996 67889999999999999999999999999999999999999999999988774 34899999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
.+||+|++|++|++. +.|+.+++.
T Consensus 224 ~~~d~v~~l~~G~i~-~~g~~~~~~ 247 (263)
T 2olj_A 224 EVGDRVLFMDGGYII-EEGKPEDLF 247 (263)
T ss_dssp HHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HhCCEEEEEECCEEE-EECCHHHHH
Confidence 999999999999984 667776653
No 17
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=8.2e-47 Score=404.40 Aligned_cols=208 Identities=26% Similarity=0.413 Sum_probs=182.7
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEec
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q 168 (652)
.|+++|++|+|++.++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 5999999999999999999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++.+||+||+...... ...+..+..+++.++++.+|+
T Consensus 83 ~~~l~p~ltV~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 123 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKL---------------------------------------AGAKKEVINQRVNQVAEVLQL 123 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHH---------------------------------------TTCCHHHHHHHHHHHHHHTTC
T ss_pred CCcCCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99998999999998632110 012223445678889999999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcC
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d 324 (652)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.|+|+|+||||++++..+||
T Consensus 124 ~-~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aD 202 (381)
T 3rlf_A 124 A-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (381)
T ss_dssp G-GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCS
T ss_pred c-hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCC
Confidence 6 68899999999999999999999999999999999999999999998887764 349999999999999999999
Q ss_pred eEEEEcCCeEEEecCChHHHH
Q 006275 325 KIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~~~~ 345 (652)
||++|++|++. ..|+..++.
T Consensus 203 ri~vl~~G~i~-~~g~~~~l~ 222 (381)
T 3rlf_A 203 KIVVLDAGRVA-QVGKPLELY 222 (381)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EEeCHHHHH
Confidence 99999999984 667766543
No 18
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=9.1e-47 Score=379.15 Aligned_cols=201 Identities=27% Similarity=0.387 Sum_probs=173.2
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------------ce
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------------~~ 162 (652)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 83 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRK 83 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCc
Confidence 6999999999998889999999999999999999999999999999999999999999998742 24
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
|+|++|++.+++..||+||+...... . ........+++.++
T Consensus 84 i~~v~q~~~l~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~ 124 (224)
T 2pcj_A 84 LGFVFQFHYLIPELTALENVIVPMLK---------------M------------------------GKPKKEAKERGEYL 124 (224)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHH---------------T------------------------TCCHHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHhHHHH---------------c------------------------CCCHHHHHHHHHHH
Confidence 99999999888889999998532100 0 00111223456788
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (652)
++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||+||||++++
T Consensus 125 l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 125 LSELGLG-DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203 (224)
T ss_dssp HHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 8999996 57889999999999999999999999999999999999999999999988764 3489999999999998
Q ss_pred HhhcCeEEEEcCCeEEEecC
Q 006275 320 DQLCTKIVETEMGVSRTYEG 339 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g 339 (652)
.+||+|++|++|++. +.|
T Consensus 204 -~~~d~v~~l~~G~i~-~~g 221 (224)
T 2pcj_A 204 -ELTHRTLEMKDGKVV-GEI 221 (224)
T ss_dssp -TTSSEEEEEETTEEE-EEE
T ss_pred -HhCCEEEEEECCEEE-EEe
Confidence 899999999999874 444
No 19
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-46 Score=386.74 Aligned_cols=209 Identities=26% Similarity=0.450 Sum_probs=179.2
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc---------------
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------------- 161 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~--------------- 161 (652)
+|+++|++++|+++++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence 69999999999988999999999999999999999999999999999999999999999987421
Q ss_pred --------eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChh
Q 006275 162 --------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (652)
Q Consensus 162 --------~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (652)
.|||++|++.+++..||+||+...... +. .....
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~--------------~~------------------------~~~~~ 127 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------VL------------------------GLSKH 127 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH--------------TT------------------------CCCHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHH--------------hc------------------------CCCHH
Confidence 399999999888888999998532100 00 00111
Q ss_pred cHHHHHHHHhhhcCCCccc-ccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeE
Q 006275 234 TLDAKVSKLMPELGFTADD-GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPM 309 (652)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~-~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tv 309 (652)
...+++.++++.+|+. +. .++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+||
T Consensus 128 ~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tv 206 (262)
T 1b0u_A 128 DARERALKYLAKVGID-ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 206 (262)
T ss_dssp HHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 2245677889999996 56 799999999999999999999999999999999999999999999988764 348999
Q ss_pred EEEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 310 IivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|+||||++++..+||+|++|++|++. ..|+.+++.
T Consensus 207 i~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 241 (262)
T 1b0u_A 207 VVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQVF 241 (262)
T ss_dssp EEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999984 668776654
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=8e-47 Score=382.22 Aligned_cols=208 Identities=26% Similarity=0.361 Sum_probs=172.8
Q ss_pred ceEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC------------
Q 006275 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~------------ 160 (652)
+|+++|++|+|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 3899999999963 469999999999999999999999999999999999999999999998742
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHH
Q 006275 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (652)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
..|||++|++.+++..||+||+...... ... ......+..++
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~---------------~~~---------------------~~~~~~~~~~~ 124 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIF---------------KYR---------------------GAMSGEERRKR 124 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHT---------------CSS---------------------SCCCHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHh---------------hhc---------------------cCCCHHHHHHH
Confidence 1499999999988889999998632100 000 00111223456
Q ss_pred HHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEec
Q 006275 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISH 314 (652)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsH 314 (652)
+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .|+|||+|||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtH 204 (235)
T 3tif_A 125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (235)
T ss_dssp HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS
T ss_pred HHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 678889999974445899999999999999999999999999999999999999999999888743 3899999999
Q ss_pred CHHHHHhhcCeEEEEcCCeEEEecCChH
Q 006275 315 DRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (652)
Q Consensus 315 d~~~l~~~~d~ii~l~~G~~~~~~g~~~ 342 (652)
|++.+ .+||+|++|++|++. ..+...
T Consensus 205 d~~~~-~~~d~i~~l~~G~i~-~~~~~~ 230 (235)
T 3tif_A 205 DINVA-RFGERIIYLKDGEVE-REEKLR 230 (235)
T ss_dssp CHHHH-TTSSEEEEEETTEEE-EEEECC
T ss_pred CHHHH-HhCCEEEEEECCEEE-EEcChh
Confidence 99965 799999999999984 444433
No 21
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-46 Score=382.91 Aligned_cols=209 Identities=26% Similarity=0.382 Sum_probs=179.0
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC---------ceEEE
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAF 165 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---------~~i~~ 165 (652)
+++|+++|++++|+++++|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|||
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 457999999999998899999999999999999999999999999999999999999999998743 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+++..||+||+..... +. ........+++.++++.
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~ 133 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAG---------------FY------------------------ASSSSEIEEMVERATEI 133 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHH---------------HH------------------------CCCHHHHHHHHHHHHHH
T ss_pred EcCCCCCCCCCcHHHHHHHHHH---------------Hc------------------------CCChHHHHHHHHHHHHH
Confidence 9999988788899999853210 00 00111223456678888
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~ 322 (652)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||+||||++++..+
T Consensus 134 ~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 212 (256)
T 1vpl_A 134 AGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFL 212 (256)
T ss_dssp HCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTT
T ss_pred CCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Confidence 9996 57889999999999999999999999999999999999999999999988774 3589999999999999999
Q ss_pred cCeEEEEcCCeEEEecCChHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
||++++|++|++. +.|+.+++
T Consensus 213 ~d~v~~l~~G~i~-~~g~~~~~ 233 (256)
T 1vpl_A 213 CDRIALIHNGTIV-ETGTVEEL 233 (256)
T ss_dssp CSEEEEEETTEEE-EEEEHHHH
T ss_pred CCEEEEEECCEEE-EecCHHHH
Confidence 9999999999984 56776654
No 22
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4.2e-46 Score=383.45 Aligned_cols=206 Identities=23% Similarity=0.309 Sum_probs=179.6
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------eEEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~i~~ 165 (652)
++|+++|++++|+++++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .++|
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 469999999999999999999999999999999999999999999999999999999999988532 4999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.+.+..||+||+...... .......+++.++++.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~ 128 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAP-----------------------------------------YGGSQDRQALQQVMAQ 128 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTT-----------------------------------------SCSTTHHHHHHHHHHH
T ss_pred EecCCccCCCCCHHHHHHhhhhh-----------------------------------------cCcHHHHHHHHHHHHH
Confidence 99999888889999998632100 0112234566788889
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHcc------CCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQ------DPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~------~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd 315 (652)
+|+. +..++++.+|||||||||+|||||+. +|++|||||||+|||+.++..+.++|++ .++|||+||||
T Consensus 129 ~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 129 TDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp TTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred cCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 9996 57889999999999999999999999 9999999999999999999999887743 35799999999
Q ss_pred HHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
++++..+||+|++|++|++ .+.|+.+++
T Consensus 208 l~~~~~~~d~v~vl~~G~i-~~~g~~~~~ 235 (266)
T 4g1u_C 208 LNLAALYADRIMLLAQGKL-VACGTPEEV 235 (266)
T ss_dssp HHHHHHHCSEEEEEETTEE-EEEECHHHH
T ss_pred HHHHHHhCCEEEEEECCEE-EEEcCHHHH
Confidence 9999999999999999998 467876654
No 23
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-46 Score=379.14 Aligned_cols=207 Identities=22% Similarity=0.325 Sum_probs=175.2
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~ 164 (652)
++|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..||
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 36999999999998889999999999999999999999999999999999999999999998742 1399
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.+++..||+||+...... ........+.+.++++
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~~----------------------------------------~~~~~~~~~~~~~~l~ 124 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAYN----------------------------------------RKDKEGIKRDLEWIFS 124 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTT----------------------------------------CCCSSHHHHHHHHHHH
T ss_pred EEecCCccCCCCcHHHHHHHhhhc----------------------------------------CCCHHHHHHHHHHHHH
Confidence 999999888888999998632100 0001122334556677
Q ss_pred hcC-CCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006275 245 ELG-FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (652)
Q Consensus 245 ~lg-l~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (652)
.++ +. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||+||||++++.
T Consensus 125 ~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 125 LFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL 203 (240)
T ss_dssp HCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred HcccHh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 773 64 46788899999999999999999999999999999999999999999988874 35899999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
.+||+|++|++|++. +.|+..++
T Consensus 204 ~~~d~v~~l~~G~i~-~~g~~~~~ 226 (240)
T 1ji0_A 204 KVAHYGYVLETGQIV-LEGKASEL 226 (240)
T ss_dssp HHCSEEEEEETTEEE-EEEEHHHH
T ss_pred HhCCEEEEEECCEEE-EEcCHHHH
Confidence 999999999999984 56766554
No 24
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.7e-46 Score=396.14 Aligned_cols=210 Identities=27% Similarity=0.450 Sum_probs=181.9
Q ss_pred CCceEEEeEEEEe-CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEE
Q 006275 95 SSGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAF 165 (652)
Q Consensus 95 ~~~i~v~~ls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~ 165 (652)
..+|+++|++++| +++++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..|||
T Consensus 12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 91 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGL 91 (355)
T ss_dssp CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEE
Confidence 3469999999999 77789999999999999999999999999999999999999999999998743 35999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
|+|++.+++.+||+||+...... ...+..+.++++.++++.
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~ 132 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLRE---------------------------------------KRVPKDEMDARVRELLRF 132 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999998899999998632110 001112334567788999
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 006275 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~ 321 (652)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.++|++ .|+|+|+||||++++..
T Consensus 133 ~gL~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~ 211 (355)
T 1z47_A 133 MRLE-SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALE 211 (355)
T ss_dssp TTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred cCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 9996 678999999999999999999999999999999999999999999999887643 48999999999999999
Q ss_pred hcCeEEEEcCCeEEEecCChHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+||+|++|++|++. ..|++.++.
T Consensus 212 ~adri~vl~~G~i~-~~g~~~~l~ 234 (355)
T 1z47_A 212 VADRVLVLHEGNVE-QFGTPEEVY 234 (355)
T ss_dssp HCSEEEEEETTEEE-EEECHHHHH
T ss_pred hCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999984 668766553
No 25
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.6e-46 Score=385.08 Aligned_cols=219 Identities=21% Similarity=0.236 Sum_probs=179.1
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~ 164 (652)
++|+++|++++|+++++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.+ ..|+
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 46999999999998899999999999999999999999999999999999999999999998742 1499
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHH-HhCChhcHHHHHHHHh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKA-QAVNLDTLDAKVSKLM 243 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~ll 243 (652)
|++|++.+++..||+||+....... .......+ +.. .........+++.+++
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~-------------------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l 138 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICP-------------------GESPLNSL--------FYKKWIPKEEEMVEKAFKIL 138 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTST-------------------TSCHHHHH--------HHCSSCCCCHHHHHHHHHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhhh-------------------ccCccccc--------ccccccCCHHHHHHHHHHHH
Confidence 9999998878899999986321000 00000000 000 0001112345677889
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (652)
+.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||+||||++++.
T Consensus 139 ~~~~l~-~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~ 217 (257)
T 1g6h_A 139 EFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL 217 (257)
T ss_dssp HHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTG
T ss_pred HHcCCc-hhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 999996 67889999999999999999999999999999999999999999999988874 34899999999999999
Q ss_pred hhcCeEEEEcCCeEEEecCChHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~ 343 (652)
.+||+|++|++|++. +.|+.++
T Consensus 218 ~~~d~v~~l~~G~i~-~~g~~~~ 239 (257)
T 1g6h_A 218 NYIDHLYVMFNGQII-AEGRGEE 239 (257)
T ss_dssp GGCSEEEEEETTEEE-EEEESHH
T ss_pred HhCCEEEEEECCEEE-EEeCHHH
Confidence 999999999999984 5676665
No 26
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4e-46 Score=384.92 Aligned_cols=207 Identities=28% Similarity=0.412 Sum_probs=179.9
Q ss_pred CcEEEEEeeeeEeCC-eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------
Q 006275 422 RSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~-~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------- 489 (652)
.++|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 347999999999975 46999999999999999999999999999999999999999999999998762
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p 562 (652)
.+|++|++...+ +..||.+|+.+..... ..+.+.++++.+++ .+..++++.+|||||||||+|||||+.+|
T Consensus 85 ~ig~v~Q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 85 SIGIVFQDPDNQL-FSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGI-EHLKDKPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp SEEEECSSGGGTC-CSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC-GGGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCccccc-ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 246677653333 4789999998764321 13457889999999 47789999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 563 TLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 563 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+++ ..|++++.+..
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~-~~g~~~~~~~~ 234 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFAE 234 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEE-EEECHHHHTHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHhcC
Confidence 999999999999999999999988754 469999999999999999999999999998 46888876543
No 27
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.5e-45 Score=392.26 Aligned_cols=209 Identities=24% Similarity=0.342 Sum_probs=180.8
Q ss_pred CCCCcEEEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----
Q 006275 419 RSGRSVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----- 489 (652)
Q Consensus 419 ~~~~~~i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----- 489 (652)
....++|+++||+++|+. ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 19 ~~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 19 DDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp ----CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHH
T ss_pred CCCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 345568999999999964 46999999999999999999999999999999999999999999999998763
Q ss_pred --------cceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHH
Q 006275 490 --------PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 490 --------~~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LA 555 (652)
.++++|+ ..+++.+||.+|+.+.... ...+.+.++|+.+|+. +..++++.+|||||||||+||
T Consensus 99 ~~~~~r~~Ig~v~Q~--~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 99 ELTKARRQIGMIFQH--FNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHHHHHTTEEEECSS--CCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHH
T ss_pred HHHHHhCcEEEEeCC--CccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 2455654 4677889999999876432 1234578899999994 678999999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+++ ..|++++.+..
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv-~~g~~~ev~~~ 254 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEVFSH 254 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-ECCBHHHHHSS
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhC
Confidence 9999999999999999999999999999998754 569999999999999999999999999998 46888876643
No 28
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.5e-46 Score=395.46 Aligned_cols=208 Identities=26% Similarity=0.377 Sum_probs=181.0
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEec
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q 168 (652)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 5899999999988889999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++.+||+||+...... ......+..+++.++++.+|+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 123 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLEL---------------------------------------RKAPREEIDKKVREVAKMLHI 123 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99998899999998632110 001112334567788999999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (652)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|+|+|+||||++++..+||
T Consensus 124 ~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 202 (362)
T 2it1_A 124 D-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMAD 202 (362)
T ss_dssp T-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred c-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 6 678999999999999999999999999999999999999999999999887643 48999999999999999999
Q ss_pred eEEEEcCCeEEEecCChHHHH
Q 006275 325 KIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+|++|++|++. ..|+..++.
T Consensus 203 ri~vl~~G~i~-~~g~~~~~~ 222 (362)
T 2it1_A 203 RIAVIREGEIL-QVGTPDEVY 222 (362)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999984 568776653
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-45 Score=379.01 Aligned_cols=205 Identities=24% Similarity=0.380 Sum_probs=179.1
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------- 489 (652)
++|+++||+++|+++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 3699999999999889999999999999999999999999999999999999999999999998763
Q ss_pred ----------cceecccccccCCCCCCHHHHHHHhh-h--hc----cHHHHHHHHhhCCCChhh-hccCcCCCCHHHHHH
Q 006275 490 ----------PNYFEQNQAEALDLDKTVLETVAEAA-E--DW----RIDDIKGLLGRCNFKADM-LDRKVSLLSGGEKAR 551 (652)
Q Consensus 490 ----------~~~~~~~~~~~~~~~~tv~e~~~~~~-~--~~----~~~~~~~~L~~~~l~~~~-~~~~~~~LSgGqrqr 551 (652)
.+|++|+ ..+++.+||.+|+.+.. . .. ..+.+.++++.+|+. +. .++++.+||||||||
T Consensus 85 ~~~~~~~~~~i~~v~Q~--~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQH--FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp HHHHHHHHHHEEEECSS--CCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHH
T ss_pred hhhHHHHhcceEEEecC--cccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHH
Confidence 1344554 45677889999998742 1 11 124577899999995 56 799999999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhH
Q 006275 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVC 628 (652)
Q Consensus 552 v~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~ 628 (652)
|+|||||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|+++. .|++++.
T Consensus 162 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 240 (262)
T 1b0u_A 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQV 240 (262)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999999999999998765 5699999999999999999999999999974 5888877
Q ss_pred hhh
Q 006275 629 FTS 631 (652)
Q Consensus 629 ~~~ 631 (652)
.+.
T Consensus 241 ~~~ 243 (262)
T 1b0u_A 241 FGN 243 (262)
T ss_dssp HHS
T ss_pred HhC
Confidence 653
No 30
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=6.9e-46 Score=395.74 Aligned_cols=208 Identities=25% Similarity=0.392 Sum_probs=179.8
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEec
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q 168 (652)
+|+++|++++|+++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 5899999999998889999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++.+||+||+....... . ....+..+++.++++.+|+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~-----------------~----------------------~~~~~~~~~v~~~l~~~~L 123 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRAR-----------------R----------------------ISKDEVEKRVVEIARKLLI 123 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSSS-----------------C----------------------SHHHHTTHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHhc-----------------C----------------------CCHHHHHHHHHHHHHHcCC
Confidence 999988999999986432100 0 0001123457788999999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (652)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|+|+|+||||++++..+||
T Consensus 124 ~-~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ad 202 (359)
T 2yyz_A 124 D-NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMAS 202 (359)
T ss_dssp G-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS
T ss_pred c-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 6 678999999999999999999999999999999999999999999998887643 48999999999999999999
Q ss_pred eEEEEcCCeEEEecCChHHHH
Q 006275 325 KIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+|++|++|++. ..|++.++.
T Consensus 203 ri~vl~~G~i~-~~g~~~~l~ 222 (359)
T 2yyz_A 203 RIAVFNQGKLV-QYGTPDEVY 222 (359)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EeCCHHHHH
Confidence 99999999984 668766543
No 31
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.9e-45 Score=394.74 Aligned_cols=208 Identities=29% Similarity=0.449 Sum_probs=180.7
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------------ce
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------------~~ 162 (652)
+|+++|++++|++.++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 5899999999998889999999999999999999999999999999999999999999998732 25
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
||||+|++.+++.+||+||+...... ......+..+++.++
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~ 123 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKL---------------------------------------RKVPRQEIDQRVREV 123 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHH
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999999998899999998632110 001112334567788
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~ 318 (652)
++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.++|++ .|+|+|+||||+++
T Consensus 124 l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 124 AELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp HHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHCCCc-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 9999996 678999999999999999999999999999999999999999999998887643 48999999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+..+||+|++|++|++. ..|++.++.
T Consensus 203 a~~~adri~vl~~G~i~-~~g~~~~l~ 228 (372)
T 1g29_1 203 AMTMGDRIAVMNRGVLQ-QVGSPDEVY 228 (372)
T ss_dssp HHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHhCCEEEEEeCCEEE-EeCCHHHHH
Confidence 99999999999999984 668776654
No 32
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.9e-45 Score=376.29 Aligned_cols=204 Identities=25% Similarity=0.391 Sum_probs=179.2
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------------cc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------PN 491 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------~~ 491 (652)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 699999999999889999999999999999999999999999999999999999999999998762 23
Q ss_pred eecccccccCCCCCCHHHHHHHhh-h--hc----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAA-E--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~-~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
|++|+ ..+++.+||.||+.+.. . .. ..+.+.++++.+++ .+..++++.+|||||||||+|||||+.+|++
T Consensus 104 ~v~Q~--~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l 180 (263)
T 2olj_A 104 MVFQR--FNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGL-KDKAHAYPDSLSGGQAQRVAIARALAMEPKI 180 (263)
T ss_dssp EECSS--CCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEeCC--CcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-chHhcCChhhCCHHHHHHHHHHHHHHCCCCE
Confidence 55554 34667889999998743 1 11 13457789999999 4678999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|+++. .|++++..+.
T Consensus 181 llLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~~ 249 (263)
T 2olj_A 181 MLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE-EGKPEDLFDR 249 (263)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHS
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 9999999999999999999998765 5699999999999999999999999999974 5888877653
No 33
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.4e-45 Score=390.54 Aligned_cols=204 Identities=26% Similarity=0.427 Sum_probs=180.1
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------------cc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------PN 491 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------~~ 491 (652)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .+
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 599999999999999999999999999999999999999999999999999999999999998761 23
Q ss_pred eecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
+++|+ ..+++.+||.||+.+.... ...+++.++++.+++ .+..++++.+|||||||||+|||||+.+|++|
T Consensus 84 ~vfQ~--~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-~~~~~r~~~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 84 YLVQE--GVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGI-SELAGRYPHELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp EECTT--CCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeCC--CcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 55554 4678899999999986431 123457889999999 47889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 566 VLDEPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||||||++||+..+..+.+.|. +.+.|||+||||++++..+||||++|++|++. ..|++++....
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~el~~~ 229 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL-QTASPHELYRQ 229 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEE-EEECHHHHHHS
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EEeCHHHHHhC
Confidence 9999999999999999887554 34679999999999999999999999999997 45888876654
No 34
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.6e-45 Score=394.69 Aligned_cols=209 Identities=28% Similarity=0.399 Sum_probs=175.9
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEe
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~ 167 (652)
.+|+++|++++|+++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 10 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 35999999999998889999999999999999999999999999999999999999999998743 3599999
Q ss_pred ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcC
Q 006275 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (652)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (652)
|++.+++.+||+||+....... .....+..+++.++++.+|
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~---------------------------------------~~~~~~~~~~v~~~l~~~~ 130 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIK---------------------------------------KFPKDEIDKRVRWAAELLQ 130 (372)
T ss_dssp C------CCCHHHHHHTTCC-----------------------------------------CCCHHHHHHHHHHHHHHTT
T ss_pred cCcccCCCCCHHHHHHHHHHhc---------------------------------------CCCHHHHHHHHHHHHHHcC
Confidence 9999888999999986432100 0111223456778899999
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhc
Q 006275 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~ 323 (652)
+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|+|+|+||||++++..+|
T Consensus 131 L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a 209 (372)
T 1v43_A 131 IE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 209 (372)
T ss_dssp CG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC
T ss_pred Ch-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 96 678999999999999999999999999999999999999999999999887643 4899999999999999999
Q ss_pred CeEEEEcCCeEEEecCChHHHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
|+|++|++|++. ..|++.++.
T Consensus 210 dri~vl~~G~i~-~~g~~~~l~ 230 (372)
T 1v43_A 210 DRIAVMNRGQLL-QIGSPTEVY 230 (372)
T ss_dssp SEEEEEETTEEE-EEECHHHHH
T ss_pred CEEEEEECCEEE-EeCCHHHHH
Confidence 999999999984 668766653
No 35
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.1e-45 Score=394.37 Aligned_cols=208 Identities=25% Similarity=0.385 Sum_probs=180.2
Q ss_pred ceEEEeEEEEeCCee--eeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------------c
Q 006275 97 GVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~--vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------------~ 161 (652)
+|+++|++++|++.+ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ .
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 589999999998877 9999999999999999999999999999999999999999999998732 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
.||||+|++.+++.+||+||+...... ......+..+++.+
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~ 123 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTN---------------------------------------MKMSKEEIRKRVEE 123 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTT---------------------------------------SSCCHHHHHHHHHH
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 599999999998899999998643210 00111223456778
Q ss_pred HhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHH
Q 006275 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (652)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~ 317 (652)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.++|++ .|+|+|+||||++
T Consensus 124 ~l~~~~L~-~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 124 VAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (353)
T ss_dssp HHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 89999996 678999999999999999999999999999999999999999999999887643 4899999999999
Q ss_pred HHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
++..+||+|++|++|++. ..|++.++.
T Consensus 203 ~~~~~adri~vl~~G~i~-~~g~~~~l~ 229 (353)
T 1oxx_K 203 DIFAIADRVGVLVKGKLV-QVGKPEDLY 229 (353)
T ss_dssp HHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999999984 667766653
No 36
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.8e-45 Score=376.32 Aligned_cols=205 Identities=26% Similarity=0.403 Sum_probs=180.1
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cc
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~ 491 (652)
.++|+++|+++.|+++++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 9 ~~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred cceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 35799999999999999999999999999999999999999999999999999999999999998763 23
Q ss_pred eecccccccCCCCCCHHHHHHHhhhh----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc------C
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK------P 561 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~------~ 561 (652)
++.|+ ..+.+..||.||+.+.... ...+.+.++++.+++. +..++++.+|||||||||+|||||+. +
T Consensus 89 ~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 89 VMRQY--SELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp EECSC--CCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred EEecC--CccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 45554 3455778999999876432 2245678899999995 67899999999999999999999999 9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---C-ceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 562 STLLVLDEPTNHLDIPSKEMLEEAISEY---K-GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 562 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~-~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|++|||||||+|||+.++..+.+.|+++ + .|||+||||++++..+||||++|++|+++ ..|++++..+
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~-~~g~~~~~~~ 237 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV-ACGTPEEVLN 237 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHCC
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EEcCHHHHhC
Confidence 9999999999999999999999998765 3 49999999999999999999999999998 4688777643
No 37
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.3e-45 Score=369.53 Aligned_cols=194 Identities=27% Similarity=0.383 Sum_probs=168.5
Q ss_pred EEEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
+|+++||+++|++ ..+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 4899999999973 46999999999999999999999999999999999999999999999998752
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhh---------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~---------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAr 556 (652)
.+|++|+ +.+++.+||.||+...... ...+.+.++++.+++.....++++.+|||||||||+|||
T Consensus 81 ~~~~i~~v~Q~--~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 81 RRDKIGFVFQQ--FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHEEEECTT--CCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhccEEEEecC--CccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 2455554 4567788999999875311 113457789999999644458999999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++.+ .+||||++|++|++.+
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER 225 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998764 56999999999965 7899999999999974
No 38
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=4.1e-45 Score=388.51 Aligned_cols=203 Identities=27% Similarity=0.402 Sum_probs=177.0
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEec
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q 168 (652)
+|+++|++++|+++ +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+|
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 37999999999888 9999999999999999999999999999999999999999999998753 25999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++.+++.+||+||+...... ..... . +++.++++.+|+
T Consensus 80 ~~~l~~~ltv~enl~~~~~~---------------------------------------~~~~~-~--~~v~~~l~~~~L 117 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRM---------------------------------------KKIKD-P--KRVLDTARDLKI 117 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------HCCCC-H--HHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHH---------------------------------------cCCCH-H--HHHHHHHHHcCC
Confidence 99998899999998632100 00011 1 456788899999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcC
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d 324 (652)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..++.+.++|+ +.|+|+|+||||++++..+||
T Consensus 118 ~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ad 196 (348)
T 3d31_A 118 E-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD 196 (348)
T ss_dssp T-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS
T ss_pred c-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 67899999999999999999999999999999999999999999999988764 358999999999999999999
Q ss_pred eEEEEcCCeEEEecCChHHH
Q 006275 325 KIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 325 ~ii~l~~G~~~~~~g~~~~~ 344 (652)
+|++|++|++. ..|++.++
T Consensus 197 ri~vl~~G~i~-~~g~~~~~ 215 (348)
T 3d31_A 197 RIAVVMDGKLI-QVGKPEEI 215 (348)
T ss_dssp EEEEESSSCEE-EEECHHHH
T ss_pred EEEEEECCEEE-EECCHHHH
Confidence 99999999984 56776654
No 39
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5.1e-45 Score=390.50 Aligned_cols=203 Identities=28% Similarity=0.438 Sum_probs=180.7
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
+|+++||+++|++..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .++++|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 489999999999999999999999999999999999999999999999999999999999998763 245666
Q ss_pred cccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
+ ..+++.+||.||+.+.... ...+++.++++.+++ .+..++++.+|||||||||+|||||+.+|+||||||
T Consensus 83 ~--~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE 159 (381)
T 3rlf_A 83 S--YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL-AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (381)
T ss_dssp T--CCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTC-GGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred C--CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 5 4678899999999886432 113457889999999 478899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||++||+..+..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|++++.++
T Consensus 160 Pts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~~l~~ 223 (381)
T 3rlf_A 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLELYH 223 (381)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EeCHHHHHh
Confidence 99999999999999988754 5799999999999999999999999999974 577777654
No 40
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.1e-44 Score=363.86 Aligned_cols=194 Identities=27% Similarity=0.389 Sum_probs=170.7
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------------
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------- 489 (652)
++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 3699999999999889999999999999999999999999999999999999999999999998752
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p 562 (652)
.+|++|+ ..+++.+|+.||+.+.... ...+.+.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 83 ~i~~v~q~--~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p 159 (224)
T 2pcj_A 83 KLGFVFQF--HYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSGGEQQRVAIARALANEP 159 (224)
T ss_dssp HEEEECSS--CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCC
T ss_pred cEEEEecC--cccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 1344443 3566788999999875321 1134578899999994 6789999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEe
Q 006275 563 TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (652)
Q Consensus 563 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~ 620 (652)
++|||||||++||+.++..+.+.|+++ +.|||+||||++++ .+||++++|++|+++.
T Consensus 160 ~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 160 ILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999998765 56999999999998 7899999999999874
No 41
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.9e-45 Score=380.92 Aligned_cols=213 Identities=25% Similarity=0.379 Sum_probs=176.4
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc------------e
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~------------~ 162 (652)
.++|+++|++++|+++++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 19 ~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred CceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 3469999999999988999999999999999999999999999999999999999999999988532 4
Q ss_pred EEEEeccCccCC--CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHH
Q 006275 163 IAFLSQEFEVSM--SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (652)
Q Consensus 163 i~~v~Q~~~~~~--~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (652)
|||++|++.+.+ ..||+||+.......... . ........+++.
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~----------~-------------------------~~~~~~~~~~~~ 143 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGV----------Y-------------------------QDIDDEIRNEAH 143 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC--------------------------------------------CCHHHHHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhcccc----------c-------------------------cCCcHHHHHHHH
Confidence 999999976433 459999986321100000 0 000112234567
Q ss_pred HHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeE--EEEecC
Q 006275 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPM--VIISHD 315 (652)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tv--IivsHd 315 (652)
++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|| |+||||
T Consensus 144 ~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd 222 (279)
T 2ihy_A 144 QLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHF 222 (279)
T ss_dssp HHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecC
Confidence 788999995 678899999999999999999999999999999999999999999999888743 38899 999999
Q ss_pred HHHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
++++..+||+|++|++|++. +.|+++++
T Consensus 223 ~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 250 (279)
T 2ihy_A 223 IEEITANFSKILLLKDGQSI-QQGAVEDI 250 (279)
T ss_dssp GGGCCTTCCEEEEEETTEEE-EEEEHHHH
T ss_pred HHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 99999999999999999984 66776554
No 42
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1e-44 Score=368.08 Aligned_cols=205 Identities=20% Similarity=0.289 Sum_probs=176.8
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------c
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~ 490 (652)
.++|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred CceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 34799999999999889999999999999999999999999999999999999999999999998752 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhh---c--cHHHHHHHHhhCC-CChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAED---W--RIDDIKGLLGRCN-FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~---~--~~~~~~~~L~~~~-l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
+|++|+ ..+++.+|+.||+.+.... . ....+.++++.++ + .+..++++.+|||||||||+|||||+.+|+|
T Consensus 84 ~~v~q~--~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l 160 (240)
T 1ji0_A 84 ALVPEG--RRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL-KERLKQLGGTLSGGEQQMLAIGRALMSRPKL 160 (240)
T ss_dssp EEECSS--CCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHH-HTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEecC--CccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccH-hhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 345544 3566778999999875311 1 1234677888884 7 4567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+|||+++|++|++.. .|++++..+
T Consensus 161 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~ 228 (240)
T 1ji0_A 161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL-EGKASELLD 228 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EEEHHHHHT
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCHHHHhc
Confidence 9999999999999999999999765 4699999999999999999999999999974 577776543
No 43
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=7.5e-45 Score=371.59 Aligned_cols=207 Identities=20% Similarity=0.299 Sum_probs=174.3
Q ss_pred ceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCC
Q 006275 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (652)
Q Consensus 97 ~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~ 175 (652)
+|+++|++++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+ ...|+|++|++.+++.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~---~~~i~~v~q~~~~~~~ 80 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV---YQSIGFVPQFFSSPFA 80 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE---CSCEEEECSCCCCSSC
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE---eccEEEEcCCCccCCC
Confidence 599999999998 788999999999999999999999999999999999999999999984 3469999999988788
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccC
Q 006275 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (652)
Q Consensus 176 ~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (652)
.||+||+....... .. +. ........+++.++++.+|+. +..++
T Consensus 81 ~tv~enl~~~~~~~----------------~~--------~~-----------~~~~~~~~~~~~~~l~~~~l~-~~~~~ 124 (253)
T 2nq2_C 81 YSVLDIVLMGRSTH----------------IN--------TF-----------AKPKSHDYQVAMQALDYLNLT-HLAKR 124 (253)
T ss_dssp CBHHHHHHGGGGGG----------------SC--------TT-----------CCCCHHHHHHHHHHHHHTTCG-GGTTS
T ss_pred CCHHHHHHHhhhhh----------------cc--------cc-----------cCCCHHHHHHHHHHHHHcCCh-HHhcC
Confidence 99999986321000 00 00 000011234567788899996 57789
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHHHHhhcCeEEEEcC
Q 006275 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETEM 331 (652)
Q Consensus 256 ~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~-g~tvIivsHd~~~l~~~~d~ii~l~~ 331 (652)
++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ . |+|||+||||++++..+||+|++|++
T Consensus 125 ~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~ 204 (253)
T 2nq2_C 125 EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNK 204 (253)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999887743 3 89999999999999999999999999
Q ss_pred CeEEEecCChHHH
Q 006275 332 GVSRTYEGNYSQY 344 (652)
Q Consensus 332 G~~~~~~g~~~~~ 344 (652)
|+ .+.|+++++
T Consensus 205 G~--~~~g~~~~~ 215 (253)
T 2nq2_C 205 QN--FKFGETRNI 215 (253)
T ss_dssp TE--EEEEEHHHH
T ss_pred Ce--EecCCHHHH
Confidence 98 466776544
No 44
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.8e-45 Score=377.96 Aligned_cols=207 Identities=21% Similarity=0.295 Sum_probs=176.7
Q ss_pred CCcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------
Q 006275 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (652)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------- 489 (652)
..++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 345799999999999889999999999999999999999999999999999999999999999997653
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhh----------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~----------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral 558 (652)
.+|++|+....+...+||.||+.+... ....+++.++++.+|+ .+..++++.+|||||||||+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LSgGqkqRv~lAraL 176 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM-SAKAQQYIGYLSTGEKQRVMIARAL 176 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC-GGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHH
Confidence 235555432223335699999986421 0112457789999999 4678999999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceE--EEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTV--ITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv--i~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
+.+|+||||||||++||+.+++.+.++|+++ +.|| |+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 251 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI-QQGAVEDIL 251 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE-EEEEHHHHC
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999999999765 5699 99999999999999999999999997 457776654
No 45
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4e-45 Score=370.58 Aligned_cols=202 Identities=27% Similarity=0.365 Sum_probs=173.4
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------ceEEEEecc
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~--------~~i~~v~Q~ 169 (652)
|+++|++++|++ +|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|||++|+
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence 789999999976 59999999999 9999999999999999999999999999999998742 359999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
+.+++..||+||+...... .......+++.++++.+|+.
T Consensus 79 ~~l~~~ltv~enl~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l~ 117 (240)
T 2onk_A 79 YALFPHLSVYRNIAYGLRN-----------------------------------------VERVERDRRVREMAEKLGIA 117 (240)
T ss_dssp CCCCTTSCHHHHHHTTCTT-----------------------------------------SCHHHHHHHHHHHHHTTTCT
T ss_pred CccCCCCcHHHHHHHHHHH-----------------------------------------cCCchHHHHHHHHHHHcCCH
Confidence 9888888999998632110 00000134566788899996
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (652)
+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||+||||++++..+||+
T Consensus 118 -~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~ 196 (240)
T 2onk_A 118 -HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADE 196 (240)
T ss_dssp -TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSE
T ss_pred -HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 577899999999999999999999999999999999999999999999888743 389999999999999999999
Q ss_pred EEEEcCCeEEEecCChHHHH
Q 006275 326 IVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 326 ii~l~~G~~~~~~g~~~~~~ 345 (652)
|++|++|++. +.|+.+++.
T Consensus 197 i~~l~~G~i~-~~g~~~~~~ 215 (240)
T 2onk_A 197 VAVMLNGRIV-EKGKLKELF 215 (240)
T ss_dssp EEEEETTEEE-EEECHHHHH
T ss_pred EEEEECCEEE-EECCHHHHH
Confidence 9999999984 667766653
No 46
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.5e-44 Score=384.55 Aligned_cols=208 Identities=25% Similarity=0.392 Sum_probs=182.4
Q ss_pred CCCcEEEEEeeeeEe-CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------c
Q 006275 420 SGRSVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------P 490 (652)
Q Consensus 420 ~~~~~i~~~~v~~~y-~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~ 490 (652)
.+..+|+++||+++| +++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 356689999999999 8888999999999999999999999999999999999999999999999998762 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
+|++|+ ..+++.+||.||+.+..... ..+++.++++.+++ .+..++++.+|||||||||+|||||+.+|+|
T Consensus 90 g~v~Q~--~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 166 (355)
T 1z47_A 90 GLVFQN--YALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRL-ESYANRFPHELSGGQQQRVALARALAPRPQV 166 (355)
T ss_dssp EEECGG--GCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEecC--cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-hhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 455554 45788899999998864311 13457889999999 4778999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|++.. .|++++..+.
T Consensus 167 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~~~ 236 (355)
T 1z47_A 167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ-FGTPEEVYEK 236 (355)
T ss_dssp EEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHS
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHhC
Confidence 9999999999999999999988754 5699999999999999999999999999974 5888776543
No 47
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-44 Score=369.09 Aligned_cols=205 Identities=22% Similarity=0.315 Sum_probs=179.2
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------ccee
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYF 493 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~~ 493 (652)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v 93 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL 93 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEE
Confidence 4699999999999889999999999999999999999999999999999999999999999998752 2455
Q ss_pred cccccccCCCCCCHHHHHHHhhhh--cc----HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEE
Q 006275 494 EQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlL 567 (652)
+|+ ..+++.+|+.||+.+.... .. .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|+||||
T Consensus 94 ~q~--~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL 170 (256)
T 1vpl_A 94 PEE--AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAIL 170 (256)
T ss_dssp CTT--CCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCC--CCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 554 3466778999999875321 11 23577899999994 678999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 568 DEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 568 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++. ..|++++..+.
T Consensus 171 DEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~~ 236 (256)
T 1vpl_A 171 DEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELKER 236 (256)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHHHH
T ss_pred eCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE-EecCHHHHHHh
Confidence 9999999999999999999765 469999999999999999999999999997 45777776554
No 48
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=9.7e-45 Score=371.87 Aligned_cols=202 Identities=20% Similarity=0.279 Sum_probs=176.6
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------c
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~ 490 (652)
.++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 34799999999999889999999999999999999999999999999999999999999999998762 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhh---------------c----cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHH
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAED---------------W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR 551 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~---------------~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqr 551 (652)
+|++|+ ..+++.+||.||+.+.... . ....+.++++.+|+. +..++++.+||||||||
T Consensus 85 ~~v~q~--~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 85 VRTFQT--PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKL 161 (257)
T ss_dssp EECCCC--CGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHH
T ss_pred EEEccC--CccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchhCCHHHHHH
Confidence 345554 3456678999999875321 1 123577899999994 67899999999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhh
Q 006275 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNV 627 (652)
Q Consensus 552 v~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~ 627 (652)
|+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+++. .|++++
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 239 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEE 239 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EeCHHH
Confidence 99999999999999999999999999999999999765 5699999999999999999999999999974 576666
No 49
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=9e-45 Score=373.89 Aligned_cols=207 Identities=26% Similarity=0.353 Sum_probs=175.3
Q ss_pred ceEEEeEEEEeC--C---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------ceEE
Q 006275 97 GVKLENISKSYK--G---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIA 164 (652)
Q Consensus 97 ~i~v~~ls~~y~--~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------~~i~ 164 (652)
+|+++|++++|+ + +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..||
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 489999999997 4 679999999999999999999999999999999999999999999998853 2599
Q ss_pred EEeccC-ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 165 FLSQEF-EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 165 ~v~Q~~-~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
|++|++ ..++..||+||+...... . .......+++.+++
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~-~~~~~~~~~~~~~l 121 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKN---------------------------------------F-YPDRDPVPLVKKAM 121 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTT---------------------------------------T-CTTSCSHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHh---------------------------------------c-CCHHHHHHHHHHHH
Confidence 999996 455678999998532100 0 01112234567788
Q ss_pred hhcCCCc-ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006275 244 PELGFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (652)
Q Consensus 244 ~~lgl~~-~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (652)
+.+|+.. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||+||||++++
T Consensus 122 ~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 122 EFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV 201 (266)
T ss_dssp HHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT
T ss_pred HHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 9999952 46789999999999999999999999999999999999999999999988774 2489999999999999
Q ss_pred HhhcCeEEEEcCCeEEEecCChHHH
Q 006275 320 DQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
..+||+|++|++|++. +.|+..++
T Consensus 202 ~~~~d~v~~l~~G~i~-~~g~~~~~ 225 (266)
T 2yz2_A 202 INHVDRVVVLEKGKKV-FDGTRMEF 225 (266)
T ss_dssp GGGCSEEEEEETTEEE-EEEEHHHH
T ss_pred HHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999984 66766554
No 50
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=7.3e-45 Score=371.29 Aligned_cols=209 Identities=24% Similarity=0.298 Sum_probs=170.9
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcC--CCCCCcEEEECCCC-----------ceE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSN-----------MKI 163 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~--~~p~~G~i~~~~~~-----------~~i 163 (652)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+ ++|++|+|.++|.+ ..+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 58999999999988999999999999999999999999999999999998 78999999998743 138
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|++.+++..||+||+...... .... ........+++.+++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~--------------~~~~----------------------~~~~~~~~~~~~~~l 126 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQA--------------KLGR----------------------EVGVAEFWTKVKKAL 126 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHH--------------HHTS----------------------CCCHHHHHHHHHHHH
T ss_pred EEeccCCccccCCCHHHHHHHHHHh--------------hccc----------------------cCCHHHHHHHHHHHH
Confidence 9999999888889999998532100 0000 000112234567788
Q ss_pred hhcCCCcccccCCCCC-CChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006275 244 PELGFTADDGDRLVAS-FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~-LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (652)
+.+|+..+..++++.+ |||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||+||||++++
T Consensus 127 ~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 127 ELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL 206 (250)
T ss_dssp HHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG
T ss_pred HHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 9999954678899998 99999999999999999999999999999999999999988874 3589999999999999
Q ss_pred Hhh-cCeEEEEcCCeEEEecCChH
Q 006275 320 DQL-CTKIVETEMGVSRTYEGNYS 342 (652)
Q Consensus 320 ~~~-~d~ii~l~~G~~~~~~g~~~ 342 (652)
..+ ||+|++|++|++. +.|+.+
T Consensus 207 ~~~~~d~v~~l~~G~i~-~~g~~~ 229 (250)
T 2d2e_A 207 NYIQPDKVHVMMDGRVV-ATGGPE 229 (250)
T ss_dssp GTSCCSEEEEEETTEEE-EEESHH
T ss_pred HHhcCCEEEEEECCEEE-EEeCHH
Confidence 888 5999999999984 567654
No 51
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.9e-44 Score=382.27 Aligned_cols=204 Identities=26% Similarity=0.413 Sum_probs=180.4
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .+|++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 489999999999889999999999999999999999999999999999999999999999998762 245555
Q ss_pred cccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 496 NQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
+ ..+++.+||.+|+.+..... ..+++.++++.+++ .+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 83 ~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE 159 (359)
T 2yyz_A 83 N--YALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLI-DNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE 159 (359)
T ss_dssp S--CCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred C--cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4 45778899999999864321 12457889999999 467899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|++++.++.
T Consensus 160 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~~~ 224 (359)
T 2yyz_A 160 PLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ-YGTPDEVYDS 224 (359)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHS
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHhC
Confidence 99999999999999988754 5699999999999999999999999999974 5888776543
No 52
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.8e-44 Score=369.37 Aligned_cols=216 Identities=19% Similarity=0.261 Sum_probs=176.8
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcC--CCCCCcEEEECCCCc-----------e
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM-----------K 162 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~--~~p~~G~i~~~~~~~-----------~ 162 (652)
++|+++|++++|+++++|+||||+|++|++++|+||||||||||+++|+|+ ++|++|+|.++|.+. .
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 469999999999988999999999999999999999999999999999999 468999999987531 3
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
|+|++|++.+++..|+.+|+...... +..... . ......+..+++.++
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~----------~~~~~~-~---------------------~~~~~~~~~~~~~~~ 146 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNA----------VRSYRG-Q---------------------ETLDRFDFQDLMEEK 146 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHH----------HHHGGG-C---------------------CCCCHHHHHHHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHh----------hhhhhc-c---------------------ccCCHHHHHHHHHHH
Confidence 99999999888889999998532110 000000 0 000111234567788
Q ss_pred hhhcCCCcccccCCCC-CCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 006275 243 MPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~-~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~ 318 (652)
++.+|+.....++++. +|||||||||+|||||+.+|+||||||||+|||+.+++++.++|++ .|+|||+||||+++
T Consensus 147 l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~ 226 (267)
T 2zu0_C 147 IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI 226 (267)
T ss_dssp HHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG
T ss_pred HHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH
Confidence 9999996456788887 5999999999999999999999999999999999999999998753 48899999999999
Q ss_pred HHhh-cCeEEEEcCCeEEEecCChHHH
Q 006275 319 LDQL-CTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 319 l~~~-~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+..+ ||+|++|++|++. +.|+.+++
T Consensus 227 ~~~~~~d~v~~l~~G~i~-~~g~~~~~ 252 (267)
T 2zu0_C 227 LDYIKPDYVHVLYQGRIV-KSGDFTLV 252 (267)
T ss_dssp GGTSCCSEEEEEETTEEE-EEECTTHH
T ss_pred HHhhcCCEEEEEECCEEE-EEcCHHHH
Confidence 9886 9999999999984 56776543
No 53
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.7e-44 Score=381.15 Aligned_cols=203 Identities=28% Similarity=0.424 Sum_probs=179.8
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
||+++||+++|+++ +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 48999999999888 999999999999999999999999999999999999999999999998762 246665
Q ss_pred cccccCCCCCCHHHHHHHhhhh---ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC
Q 006275 496 NQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~ 572 (652)
+ ..+++.+||.||+.+.... ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 80 ~--~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s 156 (348)
T 3d31_A 80 N--YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (348)
T ss_dssp T--CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred C--cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 4 4577889999999886431 1226688999999994 67899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 573 ~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|++++..+.
T Consensus 157 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~~~~~ 218 (348)
T 3d31_A 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ-VGKPEEIFEK 218 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE-EECHHHHHSS
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 99999999999988754 5699999999999999999999999999974 5888776543
No 54
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.4e-44 Score=382.19 Aligned_cols=204 Identities=27% Similarity=0.390 Sum_probs=180.1
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .+|++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 489999999999888999999999999999999999999999999999999999999999998762 245555
Q ss_pred cccccCCCCCCHHHHHHHhhhh------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
+ ..+++.+||.+|+.+.... ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||
T Consensus 83 ~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 159 (362)
T 2it1_A 83 N--WALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE 159 (362)
T ss_dssp T--CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred C--cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4 4577889999999886421 1124578899999995 67899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|++++.++.
T Consensus 160 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~~~~~ 224 (362)
T 2it1_A 160 PLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ-VGTPDEVYYK 224 (362)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHS
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHhC
Confidence 99999999999999988754 5699999999999999999999999999974 5787776543
No 55
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=6.2e-44 Score=361.87 Aligned_cols=201 Identities=26% Similarity=0.406 Sum_probs=175.4
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
+|+++|++++|++ +|+++||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 4789999999976 59999999999 999999999999999999999999999999999998752 245555
Q ss_pred cccccCCCCCCHHHHHHHhhhh----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCC
Q 006275 496 NQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt 571 (652)
+ ..+++.+|+.||+.+.... ...+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 78 ~--~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 78 D--YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp S--CCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred C--CccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 4 3466788999999875321 1234578899999995 6789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 572 NHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 572 ~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+|||+.+++.+.+.|+++ +.|||+||||++++..+|||+++|++|++. ..|++++..+.
T Consensus 155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~ 217 (240)
T 2onk_A 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV-EKGKLKELFSA 217 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHhC
Confidence 999999999999998764 569999999999999999999999999997 45888877643
No 56
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=9.6e-44 Score=381.53 Aligned_cols=204 Identities=25% Similarity=0.404 Sum_probs=179.4
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------- 489 (652)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 589999999999889999999999999999999999999999999999999999999999997652
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
.+|++|+ ..+++.+||.+|+.+..... ..+++.++++.+++ .+..++++.+|||||||||+|||||+.+|+
T Consensus 83 ig~v~Q~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 159 (372)
T 1g29_1 83 IAMVFQS--YALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL-TELLNRKPRELSGGQRQRVALGRAIVRKPQ 159 (372)
T ss_dssp EEEECSC--CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTC-GGGTTCCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred EEEEeCC--CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-chHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 1345554 45778999999998864311 12457889999999 467899999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|++++.++.
T Consensus 160 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~~~ 230 (372)
T 1g29_1 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDEVYDK 230 (372)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHS
T ss_pred EEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE-eCCHHHHHhC
Confidence 99999999999999999999988754 5699999999999999999999999999974 5887776543
No 57
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.3e-44 Score=381.22 Aligned_cols=204 Identities=26% Similarity=0.401 Sum_probs=179.7
Q ss_pred EEEEEeeeeEeCCee--eeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------------
Q 006275 424 VVTIKNLEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~--vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (652)
+|+++||+++|+++. +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++.
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 589999999998877 999999999999999999999999999999999999999999999997652
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p 562 (652)
.+|++|+ ..+++.+||.+|+.+..... ..+++.++++.+++ .+..++++.+|||||||||+|||||+.+|
T Consensus 83 ~ig~v~Q~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~~~~~~LSGGq~QRvalAraL~~~P 159 (353)
T 1oxx_K 83 KIGMVFQT--WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI-HHVLNHFPRELSGAQQQRVALARALVKDP 159 (353)
T ss_dssp CEEEEETT--SCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEeCC--CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 1345554 45778899999999864321 13457889999999 46789999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 563 TLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 563 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
++|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|++++.++.
T Consensus 160 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~~~ 231 (353)
T 1oxx_K 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ-VGKPEDLYDN 231 (353)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHS
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHhC
Confidence 999999999999999999999988754 5699999999999999999999999999974 5888876543
No 58
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=7e-44 Score=382.01 Aligned_cols=204 Identities=28% Similarity=0.424 Sum_probs=176.2
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc--------cceecc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~~ 495 (652)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .+|++|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 499999999999889999999999999999999999999999999999999999999999998762 245555
Q ss_pred cccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 496 NQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
+ ..+++.+||.+|+.+..... ..+++.++++.+++ .+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 91 ~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 167 (372)
T 1v43_A 91 S--YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI-EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 167 (372)
T ss_dssp --------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTC-GGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred C--cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4 45778999999999864311 12457889999999 478899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|++++.++.
T Consensus 168 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~~~ 232 (372)
T 1v43_A 168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPTEVYLR 232 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHHC
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHhC
Confidence 99999999999999988754 5699999999999999999999999999974 5887776543
No 59
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=9.1e-44 Score=367.15 Aligned_cols=211 Identities=22% Similarity=0.362 Sum_probs=169.7
Q ss_pred CceEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------e
Q 006275 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (652)
Q Consensus 96 ~~i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~ 162 (652)
.+|+++|++|+|++ +++|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999976 6799999999999999999999999999999999999999999999988432 4
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
|+|++|++.++. .||+||+....... ... +.+.... ....+.++
T Consensus 95 i~~v~Q~~~l~~-~tv~enl~~~~~~~-~~~---~~~~~~~-------------------------------~~~~~~~~ 138 (271)
T 2ixe_A 95 VAAVGQEPLLFG-RSFRENIAYGLTRT-PTM---EEITAVA-------------------------------MESGAHDF 138 (271)
T ss_dssp EEEECSSCCCCS-SBHHHHHHTTCSSC-CCH---HHHHHHH-------------------------------HHHTCHHH
T ss_pred EEEEecCCcccc-ccHHHHHhhhcccC-ChH---HHHHHHH-------------------------------HHHhHHHH
Confidence 999999998765 69999986421100 000 0000000 01122344
Q ss_pred hhhc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH
Q 006275 243 MPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (652)
Q Consensus 243 l~~l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~ 316 (652)
++.+ |+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .|+|||+||||+
T Consensus 139 l~~l~~gl~-~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 139 ISGFPQGYD-TEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp HHHSTTGGG-SBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH
T ss_pred HHhhhcchh-hhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 5555 553 456788999999999999999999999999999999999999999999988743 388999999999
Q ss_pred HHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 317 ~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+++. .||+|++|++|++. ..|+.+++.
T Consensus 218 ~~~~-~~d~v~~l~~G~i~-~~g~~~~l~ 244 (271)
T 2ixe_A 218 SLAE-RAHHILFLKEGSVC-EQGTHLQLM 244 (271)
T ss_dssp HHHT-TCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 9986 49999999999984 668876654
No 60
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.7e-43 Score=369.95 Aligned_cols=214 Identities=22% Similarity=0.357 Sum_probs=168.6
Q ss_pred CceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------eEE
Q 006275 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (652)
Q Consensus 96 ~~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~i~ 164 (652)
..|+++||+|+|+ +.++|+||||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.+. .||
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 4599999999995 56799999999999999999999999999999999999999999999998532 599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
||+|++.++ ..||+||+..+.... . .+.+...++.+ .+...+..+-.
T Consensus 132 ~v~Q~~~lf-~~Tv~eNi~~~~~~~-~----~~~~~~~~~~~---------------------------~l~~~i~~lp~ 178 (306)
T 3nh6_A 132 VVPQDTVLF-NDTIADNIRYGRVTA-G----NDEVEAAAQAA---------------------------GIHDAIMAFPE 178 (306)
T ss_dssp EECSSCCCC-SEEHHHHHHTTSTTC-C----HHHHHHHHHHH---------------------------TCHHHHHHSTT
T ss_pred EEecCCccC-cccHHHHHHhhcccC-C----HHHHHHHHHHh---------------------------CcHHHHHhccc
Confidence 999999875 679999996432110 0 00111111100 00111111101
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~ 322 (652)
|+. ...++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .++|+|+||||++.+..
T Consensus 179 --gl~-t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~- 254 (306)
T 3nh6_A 179 --GYR-TQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN- 254 (306)
T ss_dssp --GGG-CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-
T ss_pred --hhh-hHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-
Confidence 332 234566799999999999999999999999999999999999999999888754 47899999999999976
Q ss_pred cCeEEEEcCCeEEEecCChHHHHHH
Q 006275 323 CTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 323 ~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
||+|++|++|++ ...|+++++...
T Consensus 255 aD~i~vl~~G~i-v~~G~~~el~~~ 278 (306)
T 3nh6_A 255 ADQILVIKDGCI-VERGRHEALLSR 278 (306)
T ss_dssp CSEEEEEETTEE-EEEECHHHHHHH
T ss_pred CCEEEEEECCEE-EEECCHHHHHhc
Confidence 999999999998 578988877643
No 61
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-43 Score=364.14 Aligned_cols=207 Identities=28% Similarity=0.373 Sum_probs=178.6
Q ss_pred EEEEEeeeeEeC--C---eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------cc
Q 006275 424 VVTIKNLEFGYE--D---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PN 491 (652)
Q Consensus 424 ~i~~~~v~~~y~--~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------~~ 491 (652)
+|+++||+++|+ + +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999997 4 67999999999999999999999999999999999999999999999998752 34
Q ss_pred eecccccccCCCCCCHHHHHHHhhhh-----ccHHHHHHHHhhCCCCh-hhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAED-----WRIDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~-----~~~~~~~~~L~~~~l~~-~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
|++|+.. ...+..|+.+|+.+.... ...+++.++++.+|+.. +..++++.+|||||||||+|||||+.+|+||
T Consensus 82 ~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 82 IAFQYPE-DQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EECSSGG-GGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeccch-hhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 6666532 234578999999875321 12456788999999952 5789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhhc
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTSF 632 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~~ 632 (652)
||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++. ..|++++..+..
T Consensus 161 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~~~ 229 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV-FDGTRMEFLEKY 229 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEE-EEEEHHHHHHHS
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhcCc
Confidence 999999999999999999999765 469999999999999999999999999997 457777765443
No 62
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.5e-43 Score=370.33 Aligned_cols=205 Identities=21% Similarity=0.407 Sum_probs=173.7
Q ss_pred CcEEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------c
Q 006275 422 RSVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (652)
Q Consensus 422 ~~~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (652)
.+.|+++||+|+|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 34599999999995 578999999999999999999999999999999999999999999999998763 3
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCCh----------hhhccCcCCCCHHHHHHHHHHHHHcc
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqrqrv~LAral~~ 560 (652)
+|++|+. .+ +..||++|+.++......+++.+.++.+++.. ....+.+.+|||||||||+|||||+.
T Consensus 131 ~~v~Q~~--~l-f~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 131 GVVPQDT--VL-FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp EEECSSC--CC-CSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEecCC--cc-CcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 4666653 34 46799999998765444555666666666531 12234557999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++.. ||||++|++|+|++ .|++++.++.
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~-~G~~~el~~~ 278 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVE-RGRHEALLSR 278 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEE-EECHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEE-ECCHHHHHhc
Confidence 99999999999999999999999999875 4699999999999987 99999999999984 5888877654
No 63
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.2e-43 Score=361.56 Aligned_cols=209 Identities=22% Similarity=0.385 Sum_probs=164.3
Q ss_pred ceEEEeEEEEe--CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEE
Q 006275 97 GVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (652)
Q Consensus 97 ~i~v~~ls~~y--~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~ 164 (652)
.|+++|++|+| +++++|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 48999999999 35679999999999999999999999999999999999999999999998743 2499
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.++. .||+||+....... . . +.+.+.++. . .+.++++
T Consensus 87 ~v~Q~~~l~~-~tv~enl~~~~~~~-~-~---~~~~~~l~~--------------~-----------------~l~~~~~ 129 (247)
T 2ff7_A 87 VVLQDNVLLN-RSIIDNISLANPGM-S-V---EKVIYAAKL--------------A-----------------GAHDFIS 129 (247)
T ss_dssp EECSSCCCTT-SBHHHHHTTTCTTC-C-H---HHHHHHHHH--------------H-----------------TCHHHHH
T ss_pred EEeCCCcccc-ccHHHHHhccCCCC-C-H---HHHHHHHHH--------------h-----------------ChHHHHH
Confidence 9999998754 69999985321000 0 0 000000000 0 0111222
Q ss_pred hc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 006275 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (652)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~ 320 (652)
.+ |+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|+|||+||||++.+.
T Consensus 130 ~~~~gl~-~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 130 ELREGYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp TSTTGGG-CBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred hCcchhh-hhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 22 232 345666899999999999999999999999999999999999999999888753 4899999999999985
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
.||+|++|++|++. +.|+.+++.
T Consensus 209 -~~d~v~~l~~G~i~-~~g~~~~l~ 231 (247)
T 2ff7_A 209 -NADRIIVMEKGKIV-EQGKHKELL 231 (247)
T ss_dssp -TSSEEEEEETTEEE-EEECHHHHH
T ss_pred -hCCEEEEEECCEEE-EECCHHHHH
Confidence 59999999999984 668776654
No 64
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3e-43 Score=361.26 Aligned_cols=200 Identities=25% Similarity=0.371 Sum_probs=176.3
Q ss_pred EEEEEeeeeEeCC----eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-------cc-
Q 006275 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PN- 491 (652)
Q Consensus 424 ~i~~~~v~~~y~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------~~- 491 (652)
+|+++|++++|++ +.+|+++||+|+ ||+++|+||||||||||+++|+|++ |++|+|.++|.++. .+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 4899999999987 789999999999 9999999999999999999999999 99999999997652 34
Q ss_pred eecccccccCCCCCCHHHHHHHhhh--hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeC
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDE 569 (652)
|++|+. .+ ..|+.||+.+... ....+.+.++++.+++..+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 79 ~v~Q~~--~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 154 (263)
T 2pjz_A 79 NLPEAY--EI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE 154 (263)
T ss_dssp CCGGGS--CT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred EeCCCC--cc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 555543 33 7899999987543 23355688999999995257899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcc-EEEEEeCCEEEeecCChhhHhh
Q 006275 570 PTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVN-RVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d-rvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||++||+.++..+.+.|+++..|||+||||++++..+|| ++++|++|++. ..|++++..+
T Consensus 155 Pts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~-~~g~~~~l~~ 215 (263)
T 2pjz_A 155 PFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ-GPISVSELLE 215 (263)
T ss_dssp TTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEE-EEEEHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEE-EecCHHHHHh
Confidence 999999999999999999886699999999999999999 99999999997 4588777653
No 65
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-44 Score=358.70 Aligned_cols=191 Identities=23% Similarity=0.307 Sum_probs=165.1
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----ceEEEEeccC
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEF 170 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----~~i~~v~Q~~ 170 (652)
++|+++|++++|++ ++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+|++|++
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 87 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCC
Confidence 46999999999988 99999999999999999999999999999999999999999999998854 3699999999
Q ss_pred ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCc
Q 006275 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (652)
Q Consensus 171 ~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (652)
.+++..||+||+..... +. .. ... .+++.++++.+|+..
T Consensus 88 ~~~~~~tv~enl~~~~~---------------~~------------------------~~-~~~-~~~~~~~l~~~gl~~ 126 (214)
T 1sgw_A 88 IVPRKISVEDYLKAVAS---------------LY------------------------GV-KVN-KNEIMDALESVEVLD 126 (214)
T ss_dssp CCCTTSBHHHHHHHHHH---------------HT------------------------TC-CCC-HHHHHHHHHHTTCCC
T ss_pred cCCCCCCHHHHHHHHHH---------------hc------------------------CC-chH-HHHHHHHHHHcCCCc
Confidence 88778899999853210 00 00 112 345667888999974
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeEE
Q 006275 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327 (652)
Q Consensus 251 ~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~ii 327 (652)
. ++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|+|||++|||++++..+||+|+
T Consensus 127 -~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 127 -L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH 204 (214)
T ss_dssp -T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG
T ss_pred -C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 4 888999999999999999999999999999999999999999999887743 47899999999999999999987
Q ss_pred EEc
Q 006275 328 ETE 330 (652)
Q Consensus 328 ~l~ 330 (652)
.+.
T Consensus 205 ~~~ 207 (214)
T 1sgw_A 205 KYS 207 (214)
T ss_dssp GGB
T ss_pred EeC
Confidence 543
No 66
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2e-43 Score=362.65 Aligned_cols=199 Identities=23% Similarity=0.304 Sum_probs=170.8
Q ss_pred ceEEEeEEEEeCC----eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------ceEE-
Q 006275 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIA- 164 (652)
Q Consensus 97 ~i~v~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------~~i~- 164 (652)
+|+++|++++|++ +++|+++||+|+ |++++|+||||||||||+++|+|++ |++|+|.++|.+ .+|+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 3799999999987 789999999999 9999999999999999999999999 999999998742 2699
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.+ ..||+||+..... +. ....+++.++++
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~~---------------~~----------------------------~~~~~~~~~~l~ 113 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYEE---------------LK----------------------------GLDRDLFLEMLK 113 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHHH---------------HT----------------------------CCCHHHHHHHHH
T ss_pred EeCCCCcc--CCcHHHHHHHhhh---------------hc----------------------------chHHHHHHHHHH
Confidence 99999876 7899999853100 00 011234567788
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcC
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d 324 (652)
.+|+..+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++...|||+||||++++..+||
T Consensus 114 ~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 114 ALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKE 193 (263)
T ss_dssp HTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTT
T ss_pred HcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcC
Confidence 88986356789999999999999999999999999999999999999999999999987653499999999999999999
Q ss_pred -eEEEEcCCeEEEecCChHH
Q 006275 325 -KIVETEMGVSRTYEGNYSQ 343 (652)
Q Consensus 325 -~ii~l~~G~~~~~~g~~~~ 343 (652)
++++|++|++. +.|+.++
T Consensus 194 ~~i~~l~~G~i~-~~g~~~~ 212 (263)
T 2pjz_A 194 YKAYFLVGNRLQ-GPISVSE 212 (263)
T ss_dssp SEEEEEETTEEE-EEEEHHH
T ss_pred ceEEEEECCEEE-EecCHHH
Confidence 99999999984 5676543
No 67
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.4e-43 Score=357.32 Aligned_cols=201 Identities=25% Similarity=0.473 Sum_probs=169.8
Q ss_pred EEEEEeeeeEe--CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cc
Q 006275 424 VVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (652)
Q Consensus 424 ~i~~~~v~~~y--~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~ 491 (652)
-|+++||+++| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 38999999999 3578999999999999999999999999999999999999999999999998763 23
Q ss_pred eecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhc-----------cCcCCCCHHHHHHHHHHHHHcc
Q 006275 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 492 ~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGqrqrv~LAral~~ 560 (652)
|++|+. .++ ..|+.+|+.+.......+++.++++.+++. +..+ +++.+|||||||||+|||||+.
T Consensus 87 ~v~Q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~ 162 (247)
T 2ff7_A 87 VVLQDN--VLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162 (247)
T ss_dssp EECSSC--CCT-TSBHHHHHTTTCTTCCHHHHHHHHHHHTCH-HHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred EEeCCC--ccc-cccHHHHHhccCCCCCHHHHHHHHHHhChH-HHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence 555543 344 469999998754333345566777777763 3333 4568999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+|+||||||||++||+.++..+.+.|+++ +.|||+||||++.+.. ||+|++|++|+++. .|++++..+
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~l~~ 232 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVE-QGKHKELLS 232 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEEEE-EECHHHHHT
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999865 5699999999999865 99999999999974 588877654
No 68
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.5e-43 Score=352.79 Aligned_cols=207 Identities=25% Similarity=0.389 Sum_probs=161.7
Q ss_pred CceEEEeEEEEeC--CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccC
Q 006275 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (652)
Q Consensus 96 ~~i~v~~ls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~ 173 (652)
..|+++|++++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|++|+++++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~i~~v~q~~~~~ 81 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFSWIM 81 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSSCCCC
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---EEEEEecCCccc
Confidence 3699999999995 46799999999999999999999999999999999999999999999986 699999999886
Q ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC-ccc
Q 006275 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADD 252 (652)
Q Consensus 174 ~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~-~~~ 252 (652)
+ .||+||+....... . . .....++. . . +.+.++.+... ...
T Consensus 82 ~-~tv~enl~~~~~~~-~--~---~~~~~~~~------------------------~---~----l~~~~~~~~~~~~~~ 123 (229)
T 2pze_A 82 P-GTIKENIIFGVSYD-E--Y---RYRSVIKA------------------------C---Q----LEEDISKFAEKDNIV 123 (229)
T ss_dssp S-BCHHHHHHTTSCCC-H--H---HHHHHHHH------------------------T---T----CHHHHTTSTTGGGSC
T ss_pred C-CCHHHHhhccCCcC-h--H---HHHHHHHH------------------------h---C----cHHHHHhCccccccc
Confidence 6 49999986421100 0 0 00000000 0 0 01112222110 012
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH-Hcc--CCCeEEEEecCHHHHHhhcCeEEEE
Q 006275 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~-L~~--~g~tvIivsHd~~~l~~~~d~ii~l 329 (652)
.++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.+. +++ .++|||+||||++++. .||+|++|
T Consensus 124 ~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l 202 (229)
T 2pze_A 124 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILIL 202 (229)
T ss_dssp BCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEE
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEE
Confidence 3445789999999999999999999999999999999999999999986 433 4789999999999985 59999999
Q ss_pred cCCeEEEecCChHHHH
Q 006275 330 EMGVSRTYEGNYSQYV 345 (652)
Q Consensus 330 ~~G~~~~~~g~~~~~~ 345 (652)
++|++. +.|+++++.
T Consensus 203 ~~G~i~-~~g~~~~~~ 217 (229)
T 2pze_A 203 HEGSSY-FYGTFSELQ 217 (229)
T ss_dssp ETTEEE-EEECHHHHH
T ss_pred ECCEEE-EECCHHHHH
Confidence 999984 668776653
No 69
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=6.2e-43 Score=357.37 Aligned_cols=198 Identities=25% Similarity=0.459 Sum_probs=172.7
Q ss_pred EEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCC
Q 006275 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (652)
Q Consensus 424 ~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 502 (652)
+|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+.. ..+|++|+. .++
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~---~i~~v~q~~--~~~ 78 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ---SIGFVPQFF--SSP 78 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSCC--CCS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec---cEEEEcCCC--ccC
Confidence 699999999998 88899999999999999999999999999999999999999999998432 346777653 455
Q ss_pred CCCCHHHHHHHhhhh----------ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC
Q 006275 503 LDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (652)
Q Consensus 503 ~~~tv~e~~~~~~~~----------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~ 572 (652)
+..|+.||+.+.... ...+.+.++++.+|+. +..++++.+|||||||||+|||||+.+|+||||||||+
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 157 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSST
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 678999999875321 1124578899999994 67899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 573 ~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
+||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+ . ..|++++..
T Consensus 158 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~~ 216 (253)
T 2nq2_C 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNIL 216 (253)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHHh
Confidence 99999999999998765 5699999999999999999999999999 5 457776654
No 70
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.1e-43 Score=359.27 Aligned_cols=200 Identities=25% Similarity=0.338 Sum_probs=168.3
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCC--CCCCeeEEEECceeccc-----------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNVLP----------- 490 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~--~~p~~G~i~~~g~~~~~----------- 490 (652)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 69999999999988999999999999999999999999999999999999 78999999999987621
Q ss_pred ceecccccccCCCCCCHHHHHHHhhh---h------ccHHHHHHHHhhCCCChhhhccCcCC-CCHHHHHHHHHHHHHcc
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAE---D------WRIDDIKGLLGRCNFKADMLDRKVSL-LSGGEKARLAFCKFMVK 560 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~---~------~~~~~~~~~L~~~~l~~~~~~~~~~~-LSgGqrqrv~LAral~~ 560 (652)
++++|+ +.+++.+|+.+|+..... . .....+.++++.+|+..+..++++.+ |||||||||+|||||+.
T Consensus 83 ~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 83 FLAFQY--PVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp CCCCCC--CC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred EEeccC--CccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 234443 345677899999976431 1 01245778899999954678999999 99999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-ccEEEEEeCCEEEeecCChh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQI-VNRVVEVKGSNLQDYAGDYN 626 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~drvi~l~~g~i~~~~g~~~ 626 (652)
+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+ ||||++|++|+++. .|+++
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~ 229 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA-TGGPE 229 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE-EESHH
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE-EeCHH
Confidence 99999999999999999999999999875 35999999999999988 59999999999974 46665
No 71
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.6e-43 Score=359.11 Aligned_cols=197 Identities=28% Similarity=0.340 Sum_probs=170.4
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~v 166 (652)
+|+++|++++ ++|+++||+|++|++++|+||||||||||+++|+|+++|+ |+|.++|.+ ..|+|+
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 5899999987 6999999999999999999999999999999999999999 999998753 249999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc
Q 006275 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (652)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (652)
+|++.+++..||+||+...... . .. .+++.++++.+
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~------------------------------------------~-~~-~~~~~~~l~~~ 114 (249)
T 2qi9_C 79 SQQQTPPFATPVWHYLTLHQHD------------------------------------------K-TR-TELLNDVAGAL 114 (249)
T ss_dssp CSCCCCCTTCBHHHHHHTTCSS------------------------------------------T-TC-HHHHHHHHHHT
T ss_pred CCCCccCCCCcHHHHHHHhhcc------------------------------------------C-Cc-HHHHHHHHHHc
Confidence 9999887788999998521000 0 01 34456778888
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCC-------eEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCH
Q 006275 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPD-------LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDR 316 (652)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~-------iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~ 316 (652)
|+. +..++++.+|||||||||+|||||+.+|+ +|||||||+|||+.+++.+.++|++ .|+|||+||||+
T Consensus 115 ~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 193 (249)
T 2qi9_C 115 ALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL 193 (249)
T ss_dssp TCG-GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 985 57789999999999999999999999999 9999999999999999999888743 489999999999
Q ss_pred HHHHhhcCeEEEEcCCeEEEecCChHHH
Q 006275 317 AFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (652)
Q Consensus 317 ~~l~~~~d~ii~l~~G~~~~~~g~~~~~ 344 (652)
+++..+||++++|++|++. +.|+++++
T Consensus 194 ~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 220 (249)
T 2qi9_C 194 NHTLRHAHRAWLLKGGKML-ASGRREEV 220 (249)
T ss_dssp HHHHHHCSEEEEEETTEEE-EEEEHHHH
T ss_pred HHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999984 56765554
No 72
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=7.7e-43 Score=359.58 Aligned_cols=205 Identities=26% Similarity=0.351 Sum_probs=173.2
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCC--CCCCeeEEEECceecc----------
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~--~~p~~G~i~~~g~~~~---------- 489 (652)
.++|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 3479999999999988999999999999999999999999999999999999 4789999999998752
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhh------h---cc----HHHHHHHHhhCCCChhhhccCcC-CCCHHHHHHHHH
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAE------D---WR----IDDIKGLLGRCNFKADMLDRKVS-LLSGGEKARLAF 554 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~------~---~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSgGqrqrv~L 554 (652)
.+|++|+ ..+++.+|+.+++..... . .. ...+.++++.+|+.....++++. +|||||||||+|
T Consensus 98 ~i~~v~Q~--~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i 175 (267)
T 2zu0_C 98 GIFMAFQY--PVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 175 (267)
T ss_dssp TEEEECSS--CCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred CEEEEccC--ccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 1244443 356678899999875321 0 01 23577899999996456788887 599999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-ccEEEEEeCCEEEeecCChhhHh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQI-VNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
||||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+ |||+++|++|++.. .|++++..
T Consensus 176 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 253 (267)
T 2zu0_C 176 LQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK-SGDFTLVK 253 (267)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE-EECTTHHH
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE-EcCHHHHh
Confidence 99999999999999999999999999999999876 35999999999999886 89999999999974 57766543
No 73
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.2e-43 Score=356.26 Aligned_cols=204 Identities=19% Similarity=0.342 Sum_probs=163.5
Q ss_pred ceEEEeEEEEeC--CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCC
Q 006275 97 GVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (652)
Q Consensus 97 ~i~v~~ls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~ 174 (652)
+|+++|++++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .|+|++|++.+ +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~~-~ 78 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVAYVPQQAWI-Q 78 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---CEEEECSSCCC-C
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---EEEEEcCCCcC-C
Confidence 589999999997 46799999999999999999999999999999999999999999999986 59999999875 6
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCc----
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA---- 250 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~---- 250 (652)
..||+||+........ ...+.+ . ....+++.+++.+
T Consensus 79 ~~tv~enl~~~~~~~~---~~~~~~---~----------------------------------~~~~l~~~~~~~~~~~~ 118 (237)
T 2cbz_A 79 NDSLRENILFGCQLEE---PYYRSV---I----------------------------------QACALLPDLEILPSGDR 118 (237)
T ss_dssp SEEHHHHHHTTSCCCT---THHHHH---H----------------------------------HHTTCHHHHTTSTTGGG
T ss_pred CcCHHHHhhCccccCH---HHHHHH---H----------------------------------HHHhhHHHHHhcccccc
Confidence 7899999863210000 000000 0 0001112222211
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc-----cCCCeEEEEecCHHHHHhhcCe
Q 006275 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG-----KQDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 251 ~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~-----~~g~tvIivsHd~~~l~~~~d~ 325 (652)
...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|. ..|+|||+||||++.+. .||+
T Consensus 119 ~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~ 197 (237)
T 2cbz_A 119 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDV 197 (237)
T ss_dssp SEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSE
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCE
Confidence 12467789999999999999999999999999999999999999999999883 24889999999999984 7999
Q ss_pred EEEEcCCeEEEecCChHHHHH
Q 006275 326 IVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 326 ii~l~~G~~~~~~g~~~~~~~ 346 (652)
|++|++|++. ..|++.++..
T Consensus 198 v~~l~~G~i~-~~g~~~~~~~ 217 (237)
T 2cbz_A 198 IIVMSGGKIS-EMGSYQELLA 217 (237)
T ss_dssp EEEEETTEEE-EEECHHHHHH
T ss_pred EEEEeCCEEE-EeCCHHHHhh
Confidence 9999999984 6788776543
No 74
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=8.1e-43 Score=360.07 Aligned_cols=203 Identities=22% Similarity=0.389 Sum_probs=170.3
Q ss_pred cEEEEEeeeeEeCC---eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 423 SVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
.+|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999986 78999999999999999999999999999999999999999999999998762
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhhccH-H---------HHHHHHhhC--CCChhhhccCcCCCCHHHHHHHHHHHH
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRI-D---------DIKGLLGRC--NFKADMLDRKVSLLSGGEKARLAFCKF 557 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-~---------~~~~~L~~~--~l~~~~~~~~~~~LSgGqrqrv~LAra 557 (652)
.+|++|+. .++ ..||.||+.+....... . .+.++++.+ |+ ....++++.+|||||||||+||||
T Consensus 95 i~~v~Q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl-~~~~~~~~~~LSgGq~QRv~lAra 170 (271)
T 2ixe_A 95 VAAVGQEP--LLF-GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY-DTEVGETGNQLSGGQRQAVALARA 170 (271)
T ss_dssp EEEECSSC--CCC-SSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGG-GSBCCGGGTTSCHHHHHHHHHHHH
T ss_pred EEEEecCC--ccc-cccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcch-hhhhcCCcCCCCHHHHHHHHHHHH
Confidence 23555543 344 46999999875321110 1 134456666 55 345688899999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++.. ||+|++|++|++.. .|++++..+.
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~-~g~~~~l~~~ 246 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCE-QGTHLQLMER 246 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEE-EECHHHHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 99999999999999999999999999999876 3599999999999875 99999999999974 5887776554
No 75
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-43 Score=360.37 Aligned_cols=202 Identities=20% Similarity=0.349 Sum_probs=163.2
Q ss_pred ceEEEeEEEEe-CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceEEE
Q 006275 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (652)
Q Consensus 97 ~i~v~~ls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i~~ 165 (652)
+|+++|++|+| +++++|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 37999999999 56789999999999999999999999999999999999999999999998732 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
++|++.++. .||+||+........ ..+++.++++.
T Consensus 81 v~q~~~l~~-~tv~enl~~~~~~~~--------------------------------------------~~~~~~~~l~~ 115 (243)
T 1mv5_A 81 VSQDSAIMA-GTIRENLTYGLEGDY--------------------------------------------TDEDLWQVLDL 115 (243)
T ss_dssp ECCSSCCCC-EEHHHHTTSCTTSCS--------------------------------------------CHHHHHHHHHH
T ss_pred EcCCCcccc-ccHHHHHhhhccCCC--------------------------------------------CHHHHHHHHHH
Confidence 999998755 599999853210000 00112222333
Q ss_pred cCCCc----------ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006275 246 LGFTA----------DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (652)
Q Consensus 246 lgl~~----------~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (652)
+|+.. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||+||
T Consensus 116 ~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vt 195 (243)
T 1mv5_A 116 AFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIA 195 (243)
T ss_dssp HTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEEC
T ss_pred hChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 33321 223456789999999999999999999999999999999999999888887643 489999999
Q ss_pred cCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 314 Hd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
||++.+. .||+|++|++|++ ...|+++++.
T Consensus 196 H~~~~~~-~~d~v~~l~~G~i-~~~g~~~~~~ 225 (243)
T 1mv5_A 196 HRLSTIV-DADKIYFIEKGQI-TGSGKHNELV 225 (243)
T ss_dssp CSHHHHH-HCSEEEEEETTEE-CCCSCHHHHH
T ss_pred CChHHHH-hCCEEEEEECCEE-EEeCCHHHHH
Confidence 9999985 5999999999998 4678876654
No 76
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1e-42 Score=353.99 Aligned_cols=201 Identities=20% Similarity=0.395 Sum_probs=169.4
Q ss_pred EEEEEeeeeEe-CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------cce
Q 006275 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (652)
Q Consensus 424 ~i~~~~v~~~y-~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (652)
+|+++||+++| +++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 48999999999 5678999999999999999999999999999999999999999999999998752 235
Q ss_pred ecccccccCCCCCCHHHHHHHh-hhhccHHHHHHHHhhCCCChhhh-----------ccCcCCCCHHHHHHHHHHHHHcc
Q 006275 493 FEQNQAEALDLDKTVLETVAEA-AEDWRIDDIKGLLGRCNFKADML-----------DRKVSLLSGGEKARLAFCKFMVK 560 (652)
Q Consensus 493 ~~~~~~~~~~~~~tv~e~~~~~-~~~~~~~~~~~~L~~~~l~~~~~-----------~~~~~~LSgGqrqrv~LAral~~ 560 (652)
++|+. .++ ..|+.+|+.+. .......++.++++.+++. +.. ++++.+|||||||||+|||||+.
T Consensus 81 v~q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 81 VSQDS--AIM-AGTIRENLTYGLEGDYTDEDLWQVLDLAFAR-SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp ECCSS--CCC-CEEHHHHTTSCTTSCSCHHHHHHHHHHHTCT-TTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EcCCC--ccc-cccHHHHHhhhccCCCCHHHHHHHHHHhChH-HHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 55543 344 36999999875 2223345577778887774 333 34567999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++. .||||++|++|++. ..|++++...
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 226 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA 226 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999999999999999998765 569999999999986 59999999999997 4688877654
No 77
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.9e-42 Score=351.37 Aligned_cols=197 Identities=24% Similarity=0.402 Sum_probs=172.4
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------ccee
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (652)
+|+++||+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|.++. .+|+
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 6999999986 6999999999999999999999999999999999999999 99999998752 2455
Q ss_pred cccccccCCCCCCHHHHHHHhhh-hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC-------eE
Q 006275 494 EQNQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST-------LL 565 (652)
Q Consensus 494 ~~~~~~~~~~~~tv~e~~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~-------lL 565 (652)
+|+. .+++.+|+.||+.+... ....+.+.++++.+++ .+..++++.+|||||||||+|||||+.+|+ +|
T Consensus 79 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ll 155 (249)
T 2qi9_C 79 SQQQ--TPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL-DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLL 155 (249)
T ss_dssp CSCC--CCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTC-GGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEE
T ss_pred CCCC--ccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEE
Confidence 6543 45677899999987531 1125568889999999 467899999999999999999999999999 99
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHh
Q 006275 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCF 629 (652)
Q Consensus 566 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~ 629 (652)
||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|++++..
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 221 (249)
T 2qi9_C 156 LLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA-SGRREEVL 221 (249)
T ss_dssp EESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EEEHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999765 4699999999999999999999999999974 57776654
No 78
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.4e-42 Score=353.41 Aligned_cols=211 Identities=21% Similarity=0.322 Sum_probs=161.4
Q ss_pred ceEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceE
Q 006275 97 GVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (652)
Q Consensus 97 ~i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i 163 (652)
+|+++|++|+|++ +++|++|||+|++|++++|+||||||||||+++|+|+++| +|+|.++|.+ ..|
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 5999999999976 3699999999999999999999999999999999999987 8999998743 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|++.++ ..||+||+....... . .+.+.+.++. . .+...+..+
T Consensus 96 ~~v~Q~~~l~-~~tv~enl~~~~~~~-~----~~~~~~~l~~------------------------~---~l~~~~~~l- 141 (260)
T 2ghi_A 96 GIVPQDTILF-NETIKYNILYGKLDA-T----DEEVIKATKS------------------------A---QLYDFIEAL- 141 (260)
T ss_dssp EEECSSCCCC-SEEHHHHHHTTCTTC-C----HHHHHHHHHH------------------------T---TCHHHHHTS-
T ss_pred EEEcCCCccc-ccCHHHHHhccCCCC-C----HHHHHHHHHH------------------------h---CCHHHHHhc-
Confidence 9999999875 469999986321000 0 0000000000 0 000000000
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (652)
.. ++ ....++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .++|||+||||++++.
T Consensus 142 ~~-~~-~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~- 218 (260)
T 2ghi_A 142 PK-KW-DTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS- 218 (260)
T ss_dssp TT-GG-GCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-
T ss_pred cc-cc-cccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-
Confidence 00 00 0123566899999999999999999999999999999999999999999887743 3789999999999985
Q ss_pred hcCeEEEEcCCeEEEecCChHHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
.||+|++|++|++. ..|++.++..
T Consensus 219 ~~d~i~~l~~G~i~-~~g~~~~l~~ 242 (260)
T 2ghi_A 219 SAESIILLNKGKIV-EKGTHKDLLK 242 (260)
T ss_dssp TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred hCCEEEEEECCEEE-EECCHHHHHh
Confidence 59999999999984 6788776643
No 79
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-42 Score=346.12 Aligned_cols=190 Identities=26% Similarity=0.400 Sum_probs=164.9
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----cceecccc
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----PNYFEQNQ 497 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----~~~~~~~~ 497 (652)
.+|+++||+++|++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~- 86 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE- 86 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS-
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCC-
Confidence 47999999999988 9999999999999999999999999999999999999999999999998752 3455654
Q ss_pred cccCCCCCCHHHHHHHhhh----hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCC
Q 006275 498 AEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573 (652)
Q Consensus 498 ~~~~~~~~tv~e~~~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~ 573 (652)
..+++.+|+.||+.+... ....+.+.++++.+++. +. ++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 87 -~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~ 163 (214)
T 1sgw_A 87 -IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVA 163 (214)
T ss_dssp -CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-CT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTT
T ss_pred -CcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-cC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcC
Confidence 345677899999987532 12245678899999995 45 899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEeCCEE
Q 006275 574 LDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 574 LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~drvi~l~~g~i 618 (652)
||+.++..+.+.|+++ +.|||+||||++++..+||+++++. |+|
T Consensus 164 LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 164 IDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYS-TKI 210 (214)
T ss_dssp SCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGB-C--
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeC-Ccc
Confidence 9999999999999865 3599999999999999999987553 444
No 80
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.5e-41 Score=340.74 Aligned_cols=199 Identities=23% Similarity=0.363 Sum_probs=162.2
Q ss_pred cEEEEEeeeeEeC--CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceeccccccc
Q 006275 423 SVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500 (652)
Q Consensus 423 ~~i~~~~v~~~y~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 500 (652)
.+|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|++|+. .
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---i~~v~q~~--~ 79 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR---ISFCSQFS--W 79 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSC---EEEECSSC--C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCE---EEEEecCC--c
Confidence 4699999999995 478999999999999999999999999999999999999999999999983 56777653 3
Q ss_pred CCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChh----------hhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 501 ~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
+++ .|+.||+.+.... ......+.++.+++... ..++++.+|||||||||+|||||+.+|++||||||
T Consensus 80 ~~~-~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEP 157 (229)
T 2pze_A 80 IMP-GTIKENIIFGVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 157 (229)
T ss_dssp CCS-BCHHHHHHTTSCC-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred ccC-CCHHHHhhccCCc-ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 444 5999999875321 11223334444444210 12335689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-HHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 571 TNHLDIPSKEMLEEA-ISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 571 t~~LD~~~~~~l~~~-l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
|++||+.++..+.+. +.+. +.|||+||||++++.. ||++++|++|++.. .|++++..+
T Consensus 158 ts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~~~~ 218 (229)
T 2pze_A 158 FGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYF-YGTFSELQN 218 (229)
T ss_dssp TTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH-CSEEEEEETTEEEE-EECHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999997 4443 4699999999999864 99999999999974 578777654
No 81
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.1e-41 Score=349.48 Aligned_cols=203 Identities=20% Similarity=0.352 Sum_probs=168.7
Q ss_pred cEEEEEeeeeEeCC---eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 423 SVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 423 ~~i~~~~v~~~y~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
.+|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 35999999999975 4699999999999999999999999999999999999987 899999998762
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChh----------hhccCcCCCCHHHHHHHHHHHHHc
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKARLAFCKFMV 559 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGqrqrv~LAral~ 559 (652)
.+|++|+. .++ ..|+.+|+.+.......+++.+.++.+++... ..++++.+|||||||||+|||||+
T Consensus 95 i~~v~Q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 95 IGIVPQDT--ILF-NETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp EEEECSSC--CCC-SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCC--ccc-ccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 23555543 344 46999999875322334456677777776321 123567899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++. .||+|++|++|+++. .|++++..+.
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~~ 243 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVE-KGTHKDLLKL 243 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEE-EECHHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHhc
Confidence 999999999999999999999999999876 459999999999986 499999999999974 5888776553
No 82
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6.4e-42 Score=346.72 Aligned_cols=199 Identities=21% Similarity=0.360 Sum_probs=164.0
Q ss_pred EEEEEeeeeEeC--CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccC
Q 006275 424 VVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501 (652)
Q Consensus 424 ~i~~~~v~~~y~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 501 (652)
+|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|++|+. .
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~---i~~v~Q~~--~- 76 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS---VAYVPQQA--W- 76 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSC---EEEECSSC--C-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE---EEEEcCCC--c-
Confidence 489999999997 478999999999999999999999999999999999999999999999983 56777763 2
Q ss_pred CCCCCHHHHHHHhhhhccHHHHHHHHhhCCCC------h----hhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCC
Q 006275 502 DLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK------A----DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (652)
Q Consensus 502 ~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~------~----~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt 571 (652)
.+..|+.+|+.+..... .....+.++.+++. . ...++++.+|||||||||+|||||+.+|+||||||||
T Consensus 77 ~~~~tv~enl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 77 IQNDSLRENILFGCQLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp CCSEEHHHHHHTTSCCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred CCCcCHHHHhhCccccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 35789999998753211 11122233333221 1 1246788999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH---hc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 572 NHLDIPSKEMLEEAIS---EY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 572 ~~LD~~~~~~l~~~l~---~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
++||+.++..+.+.|. +. +.|||+||||++++. .||++++|++|++. ..|++++..+.
T Consensus 156 s~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~~ 218 (237)
T 2cbz_A 156 SAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKIS-EMGSYQELLAR 218 (237)
T ss_dssp TTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEE-EEECHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEE-EeCCHHHHhhc
Confidence 9999999999999984 32 469999999999985 69999999999997 45888877654
No 83
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.4e-42 Score=368.99 Aligned_cols=199 Identities=21% Similarity=0.358 Sum_probs=167.4
Q ss_pred CceEEEeEEEEe--CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceE
Q 006275 96 SGVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (652)
Q Consensus 96 ~~i~v~~ls~~y--~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i 163 (652)
..|+++|++|+| ++.++|++|||+|++||+++|+|||||||||||++|+|+++ ++|+|.++|.+ ..|
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 459999999999 56789999999999999999999999999999999999998 89999999853 359
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
|||+|++.+++ .||+||+..... ...+++.+++
T Consensus 97 g~v~Q~~~lf~-~tv~enl~~~~~----------------------------------------------~~~~~v~~~l 129 (390)
T 3gd7_A 97 GVIPQKVFIFS-GTFRKNLDPNAA----------------------------------------------HSDQEIWKVA 129 (390)
T ss_dssp EEESCCCCCCS-EEHHHHHCTTCC----------------------------------------------SCHHHHHHHH
T ss_pred EEEcCCcccCc-cCHHHHhhhccc----------------------------------------------cCHHHHHHHH
Confidence 99999998764 699999841100 0112344556
Q ss_pred hhcCCCcccccCCCCC-----------CChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 006275 244 PELGFTADDGDRLVAS-----------FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~-----------LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvI 310 (652)
+.+|+. +..++++.+ |||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .++|+|
T Consensus 130 ~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi 208 (390)
T 3gd7_A 130 DEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVI 208 (390)
T ss_dssp HHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEE
T ss_pred HHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 666764 456676766 999999999999999999999999999999999999999998864 478999
Q ss_pred EEecCHHHHHhhcCeEEEEcCCeEEEecCChHHHH
Q 006275 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (652)
Q Consensus 311 ivsHd~~~l~~~~d~ii~l~~G~~~~~~g~~~~~~ 345 (652)
+||||++.+ ..||||++|++|++. ..|++.++.
T Consensus 209 ~vtHd~e~~-~~aDri~vl~~G~i~-~~g~~~el~ 241 (390)
T 3gd7_A 209 LCEARIEAM-LECDQFLVIEENKVR-QYDSILELY 241 (390)
T ss_dssp EECSSSGGG-TTCSEEEEEETTEEE-EESSHHHHH
T ss_pred EEEcCHHHH-HhCCEEEEEECCEEE-EECCHHHHH
Confidence 999999876 569999999999984 668776654
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=100.00 E-value=4.2e-44 Score=403.45 Aligned_cols=380 Identities=12% Similarity=0.090 Sum_probs=240.4
Q ss_pred ceEEEeEEEEeCCeeeeeeeeE-EEECCCEEEEECCCCccHHHHHHH--HHcCCCCCCcEEEECCCCc---------eEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRI--IAGQEEPDSGNVIKAKSNM---------KIA 164 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl-~i~~Ge~~~lvG~NGsGKSTLl~~--L~G~~~p~~G~i~~~~~~~---------~i~ 164 (652)
.++.+++.+..++.++|++|+| .|++|++++|+||||||||||+++ ++|+++|++|.|.++|... .+|
T Consensus 12 ~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g 91 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFG 91 (525)
T ss_dssp --CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGT
T ss_pred CccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC
Confidence 3455566665567889999999 999999999999999999999999 7899999999999876431 133
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
|++|++.... ++. ...... .....++++
T Consensus 92 ~~~q~~~~~~------~l~---------------------------------------------~~~~~~-~~~~~~~l~ 119 (525)
T 1tf7_A 92 WDLAKLVDEG------KLF---------------------------------------------ILDASP-DPEGQEVVG 119 (525)
T ss_dssp CCHHHHHHTT------SEE---------------------------------------------EEECCC-CSSCCSCCS
T ss_pred CChHHhhccC------cEE---------------------------------------------EEecCc-ccchhhhhc
Confidence 3333321100 000 000000 000001222
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCC-----CCHHHHHHHHHHH---ccCCCeEEEEecCH
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH-----LDLDTIEWLEGYL---GKQDVPMVIISHDR 316 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~-----LD~~~~~~l~~~L---~~~g~tvIivsHd~ 316 (652)
.+++. +..++.+..|||| +|++++|||||+. ||+..++.+.+++ ++.|+|||++||++
T Consensus 120 ~~~l~-~~~~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~ 185 (525)
T 1tf7_A 120 GFDLS-ALIERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERI 185 (525)
T ss_dssp SHHHH-HHHHHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred ccCHH-HHHHHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 22221 2233344555555 5889999999984 6889988887765 44699999999999
Q ss_pred HHH---------HhhcCeEEEEcCCeEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cccchh
Q 006275 317 AFL---------DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRAS 386 (652)
Q Consensus 317 ~~l---------~~~~d~ii~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 386 (652)
+.+ ..+||+|++|++|.. .|.....+. +..+++.. ..+
T Consensus 186 ~~~~~~~~~~i~~~laD~vi~L~~~~~---~G~~~r~l~--------------------------~~k~r~~~~~~~--- 233 (525)
T 1tf7_A 186 EEYGPIARYGVEEFVSDNVVILRNVLE---GERRRRTLE--------------------------ILKLRGTSHMKG--- 233 (525)
T ss_dssp SSSSCSSTTSCHHHHCSEEEEEEEECS---TTCCEEEEE--------------------------EEEETTSCCCCS---
T ss_pred CCccccccccceeeeeeEEEEEEEEcc---CCceeEEEE--------------------------EEECCCCCCCCc---
Confidence 984 566999999998432 121100000 00000000 000
Q ss_pred HHHHHHHHHHHHhhhcccc--cccceEEecCCCCCCCCcEEEEEeeeeEeCC-eeeeeceEEEEEcCeEEEEEcCCCCcH
Q 006275 387 SAEKKLERLQEEEQIEKPF--QRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGK 463 (652)
Q Consensus 387 ~~~~~l~~l~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~-~~vl~~isl~i~~Ge~~~i~G~NGsGK 463 (652)
..+. ....... +|.......+.+++++++..|++ ..+|.+ .|++|++++|+|+|||||
T Consensus 234 ---------------~~~~~i~~~gi~v-~p~~~~~~~~~~~~~~l~~g~~~ld~vL~g---~i~~G~i~~i~G~~GsGK 294 (525)
T 1tf7_A 234 ---------------EYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGG---GFFKDSIILATGATGTGK 294 (525)
T ss_dssp ---------------EEEEEEETTEEEE-CCTTTCCSCCCCCCCEECCSCHHHHHHTTS---SEESSCEEEEEECTTSSH
T ss_pred ---------------eEEEEEcCCCEEE-EeccccccccccccceeecChHHHHHHhCC---CCCCCcEEEEEeCCCCCH
Confidence 0000 0000110 12111122334677888776653 234444 899999999999999999
Q ss_pred HHHHHHHhCCCCCCeeE--EEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCc
Q 006275 464 STLLKLIMGLEKPRGGE--VLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV 541 (652)
Q Consensus 464 STLl~~l~g~~~p~~G~--i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~ 541 (652)
|||++.++|...|. |. +.+.+.+.. ..+..++... .+... + +...|+ ....+.++
T Consensus 295 STLl~~l~g~~~~~-G~~vi~~~~ee~~---------------~~l~~~~~~~--g~~~~---~-~~~~g~-~~~~~~~p 351 (525)
T 1tf7_A 295 TLLVSRFVENACAN-KERAILFAYEESR---------------AQLLRNAYSW--GMDFE---E-MERQNL-LKIVCAYP 351 (525)
T ss_dssp HHHHHHHHHHHHTT-TCCEEEEESSSCH---------------HHHHHHHHTT--SCCHH---H-HHHTTS-EEECCCCG
T ss_pred HHHHHHHHHHHHhC-CCCEEEEEEeCCH---------------HHHHHHHHHc--CCCHH---H-HHhCCC-EEEEEecc
Confidence 99999999999885 43 233221100 0111111110 11111 1 223343 23457788
Q ss_pred CCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHH-----HHHHHHHHHHh---cCceEEEEecCH----------HHH
Q 006275 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-----SKEMLEEAISE---YKGTVITVSHDR----------YFV 603 (652)
Q Consensus 542 ~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~-----~~~~l~~~l~~---~~~tvi~vsHd~----------~~i 603 (652)
.+|||||+||+++|+++..+|++||+| ||++||.. .+..+.++++. .+.|||+|||+. ..+
T Consensus 352 ~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l 430 (525)
T 1tf7_A 352 ESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHI 430 (525)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCC
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCccc
Confidence 999999999999999999999999999 99999999 88887777653 467999999999 788
Q ss_pred HhhccEEEEEeCCE
Q 006275 604 KQIVNRVVEVKGSN 617 (652)
Q Consensus 604 ~~~~drvi~l~~g~ 617 (652)
..+||+|++|++|+
T Consensus 431 ~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 431 STITDTIILLQYVE 444 (525)
T ss_dssp TTTCSEEEEEEEEE
T ss_pred ceeeeEEEEEEEEE
Confidence 88999999998765
No 85
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-41 Score=361.76 Aligned_cols=206 Identities=17% Similarity=0.266 Sum_probs=176.1
Q ss_pred CCCCCcEEEEEeeeeEe--CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc------
Q 006275 418 GRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------ 489 (652)
Q Consensus 418 ~~~~~~~i~~~~v~~~y--~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------ 489 (652)
.|+....|+++||+++| +++.+|+++||+|++||+++|+|||||||||||++|+|+++ ++|+|.++|.++.
T Consensus 13 ~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 13 IWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp CSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 35555679999999999 56789999999999999999999999999999999999998 8999999998763
Q ss_pred ----cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCC-----------CCHHHHHHHHH
Q 006275 490 ----PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-----------LSGGEKARLAF 554 (652)
Q Consensus 490 ----~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----------LSgGqrqrv~L 554 (652)
.++++|+. .++ .+|+.+|+.... ....+++.++++.+++ .+..++++.+ |||||||||+|
T Consensus 92 ~rr~ig~v~Q~~--~lf-~~tv~enl~~~~-~~~~~~v~~~l~~~~L-~~~~~~~p~~l~~~i~~~g~~LSGGqrQRval 166 (390)
T 3gd7_A 92 WRKAFGVIPQKV--FIF-SGTFRKNLDPNA-AHSDQEIWKVADEVGL-RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCL 166 (390)
T ss_dssp HHHTEEEESCCC--CCC-SEEHHHHHCTTC-CSCHHHHHHHHHHTTC-HHHHTTSTTGGGCEECTTTTTSCHHHHHHHHH
T ss_pred HhCCEEEEcCCc--ccC-ccCHHHHhhhcc-ccCHHHHHHHHHHhCC-HHHHhhcccccccccccccccCCHHHHHHHHH
Confidence 23555543 344 479999997432 2345668889999999 4678899988 99999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
||||+.+|+||||||||++||+.++..+.+.|++. +.|+|+||||++.+. .||||++|++|+|.. .|++++.++.
T Consensus 167 ARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~-~g~~~el~~~ 243 (390)
T 3gd7_A 167 ARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVIEENKVRQ-YDSILELYHY 243 (390)
T ss_dssp HHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEEETTEEEE-ESSHHHHHHC
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 99999999999999999999999999999999875 459999999997664 599999999999984 5888876553
No 86
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2e-40 Score=344.85 Aligned_cols=204 Identities=25% Similarity=0.364 Sum_probs=147.6
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCC
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~ 175 (652)
+.|+++|+++.+ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|++|++.+++
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~l~~- 112 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQNSWIMP- 112 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---CEEEECSSCCCCS-
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---EEEEEeCCCccCc-
Confidence 459999999863 5799999999999999999999999999999999999999999999986 6999999998765
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC-ccccc
Q 006275 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADDGD 254 (652)
Q Consensus 176 ~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~-~~~~~ 254 (652)
.||+||+. .+.... . .+...++. . .+. +.+..+... ....+
T Consensus 113 ~tv~enl~-~~~~~~---~---~~~~~~~~------------------------~---~l~----~~l~~~~~~~~~~~~ 154 (290)
T 2bbs_A 113 GTIKENII-GVSYDE---Y---RYRSVIKA------------------------C---QLE----EDISKFAEKDNIVLG 154 (290)
T ss_dssp SBHHHHHH-TTCCCH---H---HHHHHHHH------------------------T---TCH----HHHHTSTTGGGCBC-
T ss_pred ccHHHHhh-Ccccch---H---HHHHHHHH------------------------h---ChH----HHHHhccccccchhc
Confidence 59999986 321000 0 00000000 0 001 112222110 01234
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH-cc--CCCeEEEEecCHHHHHhhcCeEEEEcC
Q 006275 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL-GK--QDVPMVIISHDRAFLDQLCTKIVETEM 331 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L-~~--~g~tvIivsHd~~~l~~~~d~ii~l~~ 331 (652)
+.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.+ ++ .|+|||+||||++++. .||+|++|++
T Consensus 155 ~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~ 233 (290)
T 2bbs_A 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHE 233 (290)
T ss_dssp ---CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEET
T ss_pred CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 457899999999999999999999999999999999999999999863 32 4889999999999985 6999999999
Q ss_pred CeEEEecCChHHHH
Q 006275 332 GVSRTYEGNYSQYV 345 (652)
Q Consensus 332 G~~~~~~g~~~~~~ 345 (652)
|++. +.|+++++.
T Consensus 234 G~i~-~~g~~~~l~ 246 (290)
T 2bbs_A 234 GSSY-FYGTFSELQ 246 (290)
T ss_dssp TEEE-EEECHHHHH
T ss_pred CeEE-EeCCHHHHh
Confidence 9984 668877654
No 87
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.3e-40 Score=373.08 Aligned_cols=213 Identities=24% Similarity=0.349 Sum_probs=169.4
Q ss_pred CCceEEEeEEEEeC--CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------e
Q 006275 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (652)
Q Consensus 95 ~~~i~v~~ls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~ 162 (652)
...|+++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 34699999999995 35799999999999999999999999999999999999999999999998643 5
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
|+||+|+|+++ +.||+||+....... . .+++.++++.+ .+. +.
T Consensus 419 i~~v~Q~~~lf-~~tv~eni~~~~~~~-~----~~~~~~~~~~~---------------------------~~~----~~ 461 (587)
T 3qf4_A 419 ISAVPQETVLF-SGTIKENLKWGREDA-T----DDEIVEAAKIA---------------------------QIH----DF 461 (587)
T ss_dssp EEEECSSCCCC-SEEHHHHHTTTCSSC-C----HHHHHHHHHHT---------------------------TCH----HH
T ss_pred eEEECCCCcCc-CccHHHHHhccCCCC-C----HHHHHHHHHHh---------------------------CcH----HH
Confidence 99999999885 569999996321100 0 00111111100 011 11
Q ss_pred hhhc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHH
Q 006275 243 MPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAF 318 (652)
Q Consensus 243 l~~l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~ 318 (652)
+..+ |+. ...++.+.+||||||||++|||||+.+|+||||||||++||+++++.+.+.|++ .|+|+|+||||++.
T Consensus 462 i~~l~~g~~-~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 540 (587)
T 3qf4_A 462 IISLPEGYD-SRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT 540 (587)
T ss_dssp HHTSSSGGG-CEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHH
T ss_pred HHhcccchh-hHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHH
Confidence 2222 333 234566899999999999999999999999999999999999999999888753 58999999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHHHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
+. .||+|++|++|++ ...|+++++...
T Consensus 541 ~~-~~d~i~vl~~G~i-~~~g~~~el~~~ 567 (587)
T 3qf4_A 541 AL-LADKILVLHEGKV-AGFGTHKELLEH 567 (587)
T ss_dssp HT-TSSEEEEEETTEE-EEEECHHHHHHH
T ss_pred HH-hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 85 8999999999998 578998887653
No 88
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.7e-40 Score=375.19 Aligned_cols=214 Identities=26% Similarity=0.427 Sum_probs=166.5
Q ss_pred CCceEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------e
Q 006275 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~ 162 (652)
...|+++|++|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 346999999999964 4699999999999999999999999999999999999999999999998532 5
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH
Q 006275 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (652)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (652)
||||+|+|+++ +.||+||+..+..... .+++.++++.+ .+...+..+
T Consensus 417 i~~v~Q~~~l~-~~tv~eni~~~~~~~~-----~~~~~~~~~~~---------------------------~~~~~~~~l 463 (578)
T 4a82_A 417 IGLVQQDNILF-SDTVKENILLGRPTAT-----DEEVVEAAKMA---------------------------NAHDFIMNL 463 (578)
T ss_dssp EEEECSSCCCC-SSBHHHHHGGGCSSCC-----HHHHHHHHHHT---------------------------TCHHHHHTS
T ss_pred eEEEeCCCccC-cccHHHHHhcCCCCCC-----HHHHHHHHHHh---------------------------CcHHHHHhC
Confidence 99999999885 4599999964321100 01111111110 001111111
Q ss_pred hhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 006275 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (652)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~ 320 (652)
-. |+.+ ..++.+.+|||||||||+|||||+.+|++|||||||++||+++++.+.+.|++ .++|+|+||||++.+.
T Consensus 464 p~--g~~t-~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~ 540 (578)
T 4a82_A 464 PQ--GYDT-EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT 540 (578)
T ss_dssp TT--GGGC-BCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT
T ss_pred cc--hhhh-hhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 00 2222 23445689999999999999999999999999999999999999999887743 5789999999999985
Q ss_pred hhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 321 ~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
.||+|++|++|++ ...|+++++..
T Consensus 541 -~~d~i~~l~~G~i-~~~g~~~el~~ 564 (578)
T 4a82_A 541 -HADKIVVIENGHI-VETGTHRELIA 564 (578)
T ss_dssp -TCSEEEEEETTEE-EEEECHHHHHH
T ss_pred -cCCEEEEEECCEE-EEECCHHHHHh
Confidence 5999999999998 57798877654
No 89
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.1e-39 Score=371.74 Aligned_cols=212 Identities=22% Similarity=0.381 Sum_probs=167.2
Q ss_pred CceEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------ceE
Q 006275 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (652)
Q Consensus 96 ~~i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~~i 163 (652)
..|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 46999999999975 679999999999999999999999999999999999999999999999853 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|+|.++. .||+||+..+...... .+++.+.++.+ .+. +.+
T Consensus 420 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~----~~~~~~~~~~~---------------------------~l~----~~~ 463 (582)
T 3b5x_A 420 ALVSQNVHLFN-DTIANNIAYAAEGEYT----REQIEQAARQA---------------------------HAM----EFI 463 (582)
T ss_pred EEEcCCCcccc-ccHHHHHhccCCCCCC----HHHHHHHHHHC---------------------------CCH----HHH
Confidence 99999998754 6999999642100000 01111111110 011 111
Q ss_pred hhc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH
Q 006275 244 PEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL 319 (652)
Q Consensus 244 ~~l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l 319 (652)
+.+ |+.+ ..++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .|+|+|+||||++.+
T Consensus 464 ~~~p~g~~t-~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 542 (582)
T 3b5x_A 464 ENMPQGLDT-VIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTI 542 (582)
T ss_pred HhCcccccc-hhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 221 3432 23445789999999999999999999999999999999999999999888753 389999999999999
Q ss_pred HhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 320 DQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
. .||+|++|++|++ ...|+++++..
T Consensus 543 ~-~~d~i~~l~~G~i-~~~g~~~~l~~ 567 (582)
T 3b5x_A 543 E-QADEILVVDEGEI-IERGRHADLLA 567 (582)
T ss_pred H-hCCEEEEEECCEE-EEECCHHHHHh
Confidence 6 6999999999998 46788777654
No 90
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.4e-40 Score=373.48 Aligned_cols=214 Identities=24% Similarity=0.360 Sum_probs=166.7
Q ss_pred CCceEEEeEEEEeCC-eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------eE
Q 006275 95 SSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~i 163 (652)
...|+++|++|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +|
T Consensus 352 ~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 346999999999974 5699999999999999999999999999999999999999999999998542 59
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|+|+++ +.||+||+..+.... . .+++.+.++ ...+...+..+-
T Consensus 432 ~~v~Q~~~lf-~~tv~eni~~~~~~~-~----~~~~~~~~~---------------------------~~~~~~~~~~~~ 478 (598)
T 3qf4_B 432 GIVLQDTILF-STTVKENLKYGNPGA-T----DEEIKEAAK---------------------------LTHSDHFIKHLP 478 (598)
T ss_dssp EEECTTCCCC-SSBHHHHHHSSSTTC-C----TTHHHHHTT---------------------------TTTCHHHHHTST
T ss_pred EEEeCCCccc-cccHHHHHhcCCCCC-C----HHHHHHHHH---------------------------HhCCHHHHHhcc
Confidence 9999999875 579999996321100 0 001111111 111111111110
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (652)
+ |+.+ ...+...+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|++ .|+|+|+|||+++.+..
T Consensus 479 ~--g~~t-~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~ 555 (598)
T 3qf4_B 479 E--GYET-VLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN 555 (598)
T ss_dssp T--GGGC-BCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH
T ss_pred c--cccc-hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 0 2221 22233589999999999999999999999999999999999999999887753 58999999999999965
Q ss_pred hcCeEEEEcCCeEEEecCChHHHHH
Q 006275 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 322 ~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
||+|++|++|++ ...|+++++..
T Consensus 556 -~d~i~~l~~G~i-~~~g~~~~l~~ 578 (598)
T 3qf4_B 556 -ADLIIVLRDGEI-VEMGKHDELIQ 578 (598)
T ss_dssp -CSEEEEECSSSE-EECSCHHHHHH
T ss_pred -CCEEEEEECCEE-EEECCHHHHHh
Confidence 999999999998 57899888764
No 91
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=4.4e-39 Score=366.71 Aligned_cols=204 Identities=23% Similarity=0.425 Sum_probs=174.0
Q ss_pred CcEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
...|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 457999999999974 67999999999999999999999999999999999999999999999998762
Q ss_pred cceecccccccCCCCCCHHHHHHHhh-hhccHHHHHHHHhhCCCChhhhc-----------cCcCCCCHHHHHHHHHHHH
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKARLAFCKF 557 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGqrqrv~LAra 557 (652)
.++++|+ +.++ +.|+.||+..+. .....+++.++++.+++. +..+ .++.+||||||||++||||
T Consensus 419 i~~v~Q~--~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAra 494 (582)
T 3b5x_A 419 FALVSQN--VHLF-NDTIANNIAYAAEGEYTREQIEQAARQAHAM-EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494 (582)
T ss_pred eEEEcCC--Cccc-cccHHHHHhccCCCCCCHHHHHHHHHHCCCH-HHHHhCcccccchhcCCCCcCCHHHHHHHHHHHH
Confidence 2455554 3344 469999998864 334456678888888773 3333 3457999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|+++|++|||||||++||+.+++.+.+.|++. +.|+|+||||++.+. .||+|++|++|++.+ .|++++..+.
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~~ 568 (582)
T 3b5x_A 495 LLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIE-RGRHADLLAQ 568 (582)
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 99999999999999999999999999999876 469999999999997 599999999999984 6888877653
No 92
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.7e-39 Score=366.50 Aligned_cols=204 Identities=25% Similarity=0.419 Sum_probs=174.5
Q ss_pred CcEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
...|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 456999999999973 68999999999999999999999999999999999999999999999998763
Q ss_pred cceecccccccCCCCCCHHHHHHHhh-hhccHHHHHHHHhhCCCChhhhc-----------cCcCCCCHHHHHHHHHHHH
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKARLAFCKF 557 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGqrqrv~LAra 557 (652)
.++++|+ +.++ +.|+.||+..+. .....+++.++++.+++. +..+ .++.+||||||||++||||
T Consensus 419 i~~v~Q~--~~l~-~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAra 494 (582)
T 3b60_A 419 VALVSQN--VHLF-NDTVANNIAYARTEEYSREQIEEAARMAYAM-DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_dssp EEEECSS--CCCC-SSBHHHHHHTTTTSCCCHHHHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred CeEEccC--CcCC-CCCHHHHHhccCCCCCCHHHHHHHHHHcCCH-HHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 2455554 3344 469999999865 334566788888888873 3333 3457999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
|+++|++|||||||++||+.++..+.+.|++. +.|+|+||||++.+. .||||++|++|++++ .|++++..+.
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~~ 568 (582)
T 3b60_A 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLAQ 568 (582)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHHH
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE-ecCHHHHHHc
Confidence 99999999999999999999999999999865 569999999999986 599999999999984 5888887654
No 93
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.1e-39 Score=371.62 Aligned_cols=212 Identities=24% Similarity=0.401 Sum_probs=166.8
Q ss_pred CceEEEeEEEEeCC--eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------eE
Q 006275 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (652)
Q Consensus 96 ~~i~v~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~----------~i 163 (652)
..|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 46999999999974 6799999999999999999999999999999999999999999999998532 59
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+|++|+|.++. .||+||+..+...... .+++.+.++.+ .+. +.+
T Consensus 420 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~----~~~~~~~l~~~---------------------------~l~----~~~ 463 (582)
T 3b60_A 420 ALVSQNVHLFN-DTVANNIAYARTEEYS----REQIEEAARMA---------------------------YAM----DFI 463 (582)
T ss_dssp EEECSSCCCCS-SBHHHHHHTTTTSCCC----HHHHHHHHHTT---------------------------TCH----HHH
T ss_pred eEEccCCcCCC-CCHHHHHhccCCCCCC----HHHHHHHHHHc---------------------------CCH----HHH
Confidence 99999998854 6999999642100000 01111111111 011 111
Q ss_pred hhc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH
Q 006275 244 PEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL 319 (652)
Q Consensus 244 ~~l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l 319 (652)
+.+ |+.+ ..++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .|+|+|+||||++.+
T Consensus 464 ~~~p~g~~~-~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 542 (582)
T 3b60_A 464 NKMDNGLDT-IIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 542 (582)
T ss_dssp HHSTTGGGS-BCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGT
T ss_pred Hhccccccc-cccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHH
Confidence 111 3322 33455789999999999999999999999999999999999999999887753 489999999999998
Q ss_pred HhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 320 DQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
. .||+|++|++|++. ..|+++++..
T Consensus 543 ~-~~d~i~~l~~G~i~-~~g~~~~l~~ 567 (582)
T 3b60_A 543 E-QADEIVVVEDGIIV-ERGTHSELLA 567 (582)
T ss_dssp T-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred H-hCCEEEEEECCEEE-EecCHHHHHH
Confidence 5 69999999999984 6788777654
No 94
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2e-39 Score=370.39 Aligned_cols=204 Identities=21% Similarity=0.377 Sum_probs=173.9
Q ss_pred CcEEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------c
Q 006275 422 RSVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (652)
Q Consensus 422 ~~~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (652)
.+.|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 352 ~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 34599999999997 467999999999999999999999999999999999999999999999998863 2
Q ss_pred ceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCc-----------CCCCHHHHHHHHHHHHHc
Q 006275 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV-----------SLLSGGEKARLAFCKFMV 559 (652)
Q Consensus 491 ~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~-----------~~LSgGqrqrv~LAral~ 559 (652)
++++|+. .+ ++.|++||+..+......+++.+.++.+++. +..++.+ .+||||||||++|||||+
T Consensus 432 ~~v~Q~~--~l-f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 432 GIVLQDT--IL-FSTTVKENLKYGNPGATDEEIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp EEECTTC--CC-CSSBHHHHHHSSSTTCCTTHHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EEEeCCC--cc-ccccHHHHHhcCCCCCCHHHHHHHHHHhCCH-HHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 4556543 34 4679999998765444455677777777763 3333333 689999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
++|+||||||||++||+.++..+.+.|++. +.|+|+||||++.+.. ||+|++|++|++++ .|++++.++.
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~~l~~~ 579 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVE-MGKHDELIQK 579 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEE-CSCHHHHHHT
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 999999999999999999999999999865 5699999999999976 99999999999984 6999887764
No 95
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.7e-39 Score=365.68 Aligned_cols=205 Identities=23% Similarity=0.366 Sum_probs=172.9
Q ss_pred CcEEEEEeeeeEeC--CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 422 RSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
.+.|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 34699999999995 467999999999999999999999999999999999999999999999998763
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCCh----------hhhccCcCCCCHHHHHHHHHHHHHc
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFMV 559 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqrqrv~LAral~ 559 (652)
.+|++|+. .+ ++.|++||+..+......+++.+.++..++.. ...++++.+||||||||++|||||+
T Consensus 419 i~~v~Q~~--~l-f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 419 ISAVPQET--VL-FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp EEEECSSC--CC-CSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEECCCC--cC-cCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 24556543 34 45699999987655444555556665555421 2235677899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
++|+||||||||++||+.+++.+.+.|++. +.|+|+||||++.+. .||||++|++|++++ .|++++..+.
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~-~g~~~el~~~ 567 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAG-FGTHKELLEH 567 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEE-EECHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 999999999999999999999999999875 469999999999986 699999999999985 5888887654
No 96
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.7e-39 Score=369.41 Aligned_cols=214 Identities=23% Similarity=0.374 Sum_probs=162.6
Q ss_pred Cc-eEEEeEEEEeCC---eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------c
Q 006275 96 SG-VKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------M 161 (652)
Q Consensus 96 ~~-i~v~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------~ 161 (652)
.. |+++|++|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHh
Confidence 35 999999999975 369999999999999999999999999999999999999999999999853 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (652)
+|+|++|+|.++ +.||+||+..+....... ..+++.+.++.+ .+. +
T Consensus 419 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~--~~~~~~~~~~~~---------------------------~l~----~ 464 (595)
T 2yl4_A 419 KIGTVSQEPILF-SCSIAENIAYGADDPSSV--TAEEIQRVAEVA---------------------------NAV----A 464 (595)
T ss_dssp SEEEECSSCCCC-SSBHHHHHHTTSSSTTTS--CHHHHHHHHHHT---------------------------TCH----H
T ss_pred ceEEEccCCccc-CCCHHHHHhhcCCCcccc--CHHHHHHHHHHc---------------------------CCH----H
Confidence 599999999885 469999996421100000 000111111100 001 1
Q ss_pred Hhhhc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHH
Q 006275 242 LMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317 (652)
Q Consensus 242 ll~~l--gl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~ 317 (652)
.++.+ |+. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .++|+|+||||++
T Consensus 465 ~~~~l~~g~~-~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 543 (595)
T 2yl4_A 465 FIRNFPQGFN-TVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLS 543 (595)
T ss_dssp HHHTSSSGGG-CBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHH
T ss_pred HHHhCccccc-ccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 11111 111 122334689999999999999999999999999999999999999999888753 4899999999999
Q ss_pred HHHhhcCeEEEEcCCeEEEecCChHHHHH
Q 006275 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~~~~~~g~~~~~~~ 346 (652)
.+. .||+|++|++|++. ..|+++++..
T Consensus 544 ~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 570 (595)
T 2yl4_A 544 TIK-NANMVAVLDQGKIT-EYGKHEELLS 570 (595)
T ss_dssp HHH-HSSEEEEEETTEEE-EEECSCC---
T ss_pred HHH-cCCEEEEEECCEEE-EECCHHHHHh
Confidence 995 59999999999984 6687776543
No 97
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4.5e-39 Score=366.22 Aligned_cols=204 Identities=26% Similarity=0.465 Sum_probs=172.9
Q ss_pred CcEEEEEeeeeEeCC--eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----------
Q 006275 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (652)
.+.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 345999999999964 57999999999999999999999999999999999999999999999998763
Q ss_pred cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhh-----------ccCcCCCCHHHHHHHHHHHHH
Q 006275 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML-----------DRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~-----------~~~~~~LSgGqrqrv~LAral 558 (652)
.++++|+ +.+ ++.|++||+..+......+++.+.++.+++. +.. ..+..+||||||||++|||||
T Consensus 417 i~~v~Q~--~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~-~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral 492 (578)
T 4a82_A 417 IGLVQQD--NIL-FSDTVKENILLGRPTATDEEVVEAAKMANAH-DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 492 (578)
T ss_dssp EEEECSS--CCC-CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCH-HHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred eEEEeCC--Ccc-CcccHHHHHhcCCCCCCHHHHHHHHHHhCcH-HHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHH
Confidence 2456654 334 4569999998875545556677777776653 222 234468999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+++|++|||||||++||+.++..+.+.+++. +.|+|+||||++++.. ||||++|++|++.+ .|++++..+.
T Consensus 493 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~el~~~ 565 (578)
T 4a82_A 493 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVE-TGTHRELIAK 565 (578)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEE-EECHHHHHHT
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 9999999999999999999999999999865 4699999999999965 99999999999984 6888887654
No 98
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=8.2e-39 Score=365.40 Aligned_cols=202 Identities=29% Similarity=0.472 Sum_probs=169.7
Q ss_pred cE-EEEEeeeeEeCC---eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------
Q 006275 423 SV-VTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (652)
Q Consensus 423 ~~-i~~~~v~~~y~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (652)
.. |+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHh
Confidence 34 999999999974 46999999999999999999999999999999999999999999999998763
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhhh---ccHHHHHHHHhhCCCChhhh-------c----cCcCCCCHHHHHHHHH
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADML-------D----RKVSLLSGGEKARLAF 554 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~~---~~~~~~~~~L~~~~l~~~~~-------~----~~~~~LSgGqrqrv~L 554 (652)
.++++|+ +.++ +.|+.||+..+... ...+++.++++.+++. +.. + .++.+||||||||++|
T Consensus 419 ~i~~v~Q~--~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~i 494 (595)
T 2yl4_A 419 KIGTVSQE--PILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAV-AFIRNFPQGFNTVVGEKGVLLSGGQKQRIAI 494 (595)
T ss_dssp SEEEECSS--CCCC-SSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCH-HHHHTSSSGGGCBCSSSSCCCCHHHHHHHHH
T ss_pred ceEEEccC--Cccc-CCCHHHHHhhcCCCccccCHHHHHHHHHHcCCH-HHHHhCcccccccccCCCCcCCHHHHHHHHH
Confidence 2355554 3344 46999999986543 4566788888888873 222 2 2348999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
||||+++|++|||||||++||+.+++.+.+.|++. +.|+|+||||++++.. ||||++|++|++++ .|++++.++
T Consensus 495 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~-~g~~~~l~~ 570 (595)
T 2yl4_A 495 ARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN-ANMVAVLDQGKITE-YGKHEELLS 570 (595)
T ss_dssp HHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHH-SSEEEEEETTEEEE-EECSCC---
T ss_pred HHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999999999865 5699999999999965 99999999999984 577776654
No 99
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1e-38 Score=332.04 Aligned_cols=196 Identities=22% Similarity=0.386 Sum_probs=147.5
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCC
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 502 (652)
++|+++||++.+ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|++|+. .++
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~---i~~v~Q~~--~l~ 111 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR---ISFCSQNS--WIM 111 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSC---EEEECSSC--CCC
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE---EEEEeCCC--ccC
Confidence 359999999864 67999999999999999999999999999999999999999999999983 56777753 344
Q ss_pred CCCCHHHHHHHhhhhccHHHHHHHHhhCCCChh----------hhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC
Q 006275 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (652)
Q Consensus 503 ~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~ 572 (652)
+ .|+.+|+. ... .....+.+.++.+++... ..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 112 ~-~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts 188 (290)
T 2bbs_A 112 P-GTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (290)
T ss_dssp S-SBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred c-ccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcc
Confidence 4 59999998 421 122223344444554211 1223457999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH-Hhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 573 HLDIPSKEMLEEAI-SEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 573 ~LD~~~~~~l~~~l-~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
+||+.++..+.+.+ .+. +.|||+||||++++. .||++++|++|++. ..|++++...
T Consensus 189 ~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 247 (290)
T 2bbs_A 189 YLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQN 247 (290)
T ss_dssp TCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEE-EEECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEE-EeCCHHHHhh
Confidence 99999999999974 443 469999999999986 59999999999997 4577776543
No 100
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.9e-38 Score=388.66 Aligned_cols=216 Identities=24% Similarity=0.406 Sum_probs=172.2
Q ss_pred CCceEEEeEEEEeCCe---eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc----------
Q 006275 95 SSGVKLENISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~---~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~---------- 161 (652)
...|+++||+|+|+++ ++|+||||+|++||++||||++|||||||+++|.|+++|++|+|.++|.+.
T Consensus 1074 ~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp CCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred CCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHh
Confidence 3469999999999653 699999999999999999999999999999999999999999999998643
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHH-HHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHH
Q 006275 162 KIAFLSQEFEVSMSRTVREEFMSAFKE-EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (652)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (652)
+|+||||+|.+ ++.||+|||..+.+. +.. .+++.++++.+. +...+.
T Consensus 1154 ~i~~V~Qdp~L-F~gTIreNI~~gld~~~~s----d~ei~~Al~~a~---------------------------l~~~I~ 1201 (1321)
T 4f4c_A 1154 QIAIVSQEPTL-FDCSIAENIIYGLDPSSVT----MAQVEEAARLAN---------------------------IHNFIA 1201 (1321)
T ss_dssp TEEEECSSCCC-CSEEHHHHHSSSSCTTTSC----HHHHHHHHHHTT---------------------------CHHHHH
T ss_pred heEEECCCCEe-eCccHHHHHhccCCCCCCC----HHHHHHHHHHhC---------------------------ChHHHH
Confidence 69999999987 678999998643211 000 012222222111 111111
Q ss_pred HHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHH
Q 006275 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAF 318 (652)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~ 318 (652)
.+ + -|+.+..++ ...+||||||||++|||||+++|+|||||||||+||+++.+.+.+.|++ .++|+|+|+|+++.
T Consensus 1202 ~L-p-~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsT 1278 (1321)
T 4f4c_A 1202 EL-P-EGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNT 1278 (1321)
T ss_dssp TS-T-TTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSST
T ss_pred cC-c-CCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHH
Confidence 11 1 145444433 3689999999999999999999999999999999999999999999975 48999999999999
Q ss_pred HHhhcCeEEEEcCCeEEEecCChHHHHHH
Q 006275 319 LDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~~~~~g~~~~~~~~ 347 (652)
+. .||+|++|++|++ +..|++++++..
T Consensus 1279 i~-~aD~I~Vld~G~I-vE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1279 VM-NADCIAVVSNGTI-IEKGTHTQLMSE 1305 (1321)
T ss_dssp TT-TCSEEEEESSSSE-EEEECHHHHHHC
T ss_pred HH-hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 95 5999999999998 578999888764
No 101
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.4e-37 Score=350.02 Aligned_cols=202 Identities=28% Similarity=0.382 Sum_probs=170.1
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCC
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~ 174 (652)
...++++|+++.|++. .|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ ...|+|++|++...+
T Consensus 285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~---~~~i~~v~Q~~~~~~ 360 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW---DLTVAYKPQYIKADY 360 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---CCCEEEECSSCCCCC
T ss_pred CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---CceEEEEecCCcCCC
Confidence 4579999999999774 699999999999999999999999999999999999999999986 357999999987767
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccccc
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (652)
..||.+++....... . ...+.+.++++.+|+. +..+
T Consensus 361 ~~tv~~~~~~~~~~~-------------~------------------------------~~~~~~~~~l~~~~l~-~~~~ 396 (538)
T 1yqt_A 361 EGTVYELLSKIDASK-------------L------------------------------NSNFYKTELLKPLGII-DLYD 396 (538)
T ss_dssp SSBHHHHHHHHHHHH-------------H------------------------------TCHHHHHHTTTTTTCG-GGTT
T ss_pred CCcHHHHHHhhhccC-------------C------------------------------CHHHHHHHHHHHcCCh-hhhc
Confidence 889977764210000 0 0023456788999996 6789
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEEEEc
Q 006275 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ii~l~ 330 (652)
+++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ .|+|||+||||++++..+||||++|+
T Consensus 397 ~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 397 REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999888753 48999999999999999999999998
Q ss_pred C--CeEEEecCChHHHH
Q 006275 331 M--GVSRTYEGNYSQYV 345 (652)
Q Consensus 331 ~--G~~~~~~g~~~~~~ 345 (652)
+ |.+ ...|++.++.
T Consensus 477 ~~~~~~-~~~g~~~~~~ 492 (538)
T 1yqt_A 477 GEPGKY-GRALPPMGMR 492 (538)
T ss_dssp EETTTE-EEECCCEEHH
T ss_pred CCcceE-eecCCHHHHH
Confidence 5 443 3567765543
No 102
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.9e-37 Score=352.67 Aligned_cols=202 Identities=28% Similarity=0.394 Sum_probs=169.8
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCC
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~ 174 (652)
...++++|++++|++. .|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ ..+|||++|++...+
T Consensus 355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~---~~~i~~v~Q~~~~~~ 430 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLTVAYKPQYIKAEY 430 (607)
T ss_dssp CEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---CCCEEEECSSCCCCC
T ss_pred ceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---eeEEEEEecCccCCC
Confidence 4579999999999764 689999999999999999999999999999999999999999986 357999999987767
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccccc
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (652)
..||.+++....... . .....+.++++.+|+. +..+
T Consensus 431 ~~tv~e~~~~~~~~~-------------~------------------------------~~~~~~~~~l~~~~l~-~~~~ 466 (607)
T 3bk7_A 431 EGTVYELLSKIDSSK-------------L------------------------------NSNFYKTELLKPLGII-DLYD 466 (607)
T ss_dssp SSBHHHHHHHHHHHH-------------H------------------------------HCHHHHHHTHHHHTCT-TTTT
T ss_pred CCcHHHHHHhhhccC-------------C------------------------------CHHHHHHHHHHHcCCc-hHhc
Confidence 889988764210000 0 0013355678888986 6789
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEc
Q 006275 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETE 330 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~ii~l~ 330 (652)
+++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||+||||++++..+||||++|+
T Consensus 467 ~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 467 RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546 (607)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 9999999999999999999999999999999999999999999988875 358999999999999999999999998
Q ss_pred C--CeEEEecCChHHHH
Q 006275 331 M--GVSRTYEGNYSQYV 345 (652)
Q Consensus 331 ~--G~~~~~~g~~~~~~ 345 (652)
+ |.. ...|++.++.
T Consensus 547 ~~~g~~-~~~g~p~~~~ 562 (607)
T 3bk7_A 547 GEPGRH-GRALPPMGMR 562 (607)
T ss_dssp EETTTE-EEECCCEEHH
T ss_pred CCcceE-EecCCHHHHH
Confidence 5 443 3557766543
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.7e-37 Score=345.87 Aligned_cols=192 Identities=25% Similarity=0.327 Sum_probs=163.8
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCC
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~ 174 (652)
...++++|+++.|++. .|+.+||+|++||++||+||||||||||+++|+|+++|++|+|.+.+ ..++|++|++...+
T Consensus 267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~--~~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK--QILSYKPQRIFPNY 343 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC--CCEEEECSSCCCCC
T ss_pred cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--eeeEeechhccccc
Confidence 4579999999999874 57888999999999999999999999999999999999999999874 46999999977666
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccccc
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (652)
..||++|+..... .. .. .....+.++++.+|+. +..+
T Consensus 344 ~~tv~~~l~~~~~-----------------~~-----------------------~~--~~~~~~~~~l~~~~l~-~~~~ 380 (538)
T 3ozx_A 344 DGTVQQYLENASK-----------------DA-----------------------LS--TSSWFFEEVTKRLNLH-RLLE 380 (538)
T ss_dssp SSBHHHHHHHHCS-----------------ST-----------------------TC--TTSHHHHHTTTTTTGG-GCTT
T ss_pred CCCHHHHHHHhhh-----------------hc-----------------------cc--hhHHHHHHHHHHcCCH-HHhc
Confidence 7899998742100 00 00 0012356778888986 6789
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEc
Q 006275 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETE 330 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~ii~l~ 330 (652)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+ +.|+|||+||||++++..+||||++|+
T Consensus 381 ~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 381 SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999999888774 358999999999999999999999998
Q ss_pred CC
Q 006275 331 MG 332 (652)
Q Consensus 331 ~G 332 (652)
++
T Consensus 461 ~~ 462 (538)
T 3ozx_A 461 GE 462 (538)
T ss_dssp EE
T ss_pred CC
Confidence 63
No 104
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.8e-36 Score=370.08 Aligned_cols=205 Identities=25% Similarity=0.459 Sum_probs=171.5
Q ss_pred CcEEEEEeeeeEeCC---eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc---------
Q 006275 422 RSVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (652)
.+.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 345999999999974 46999999999999999999999999999999999999999999999998863
Q ss_pred -cceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCCh----------hhhccCcCCCCHHHHHHHHHHHHH
Q 006275 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 490 -~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqrqrv~LAral 558 (652)
.++++|++ .+ ++.|++||+..+......+++.+.++..++.. ......+.+||||||||++|||||
T Consensus 465 ~i~~v~Q~~--~l-~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal 541 (1284)
T 3g5u_A 465 IIGVVSQEP--VL-FATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541 (1284)
T ss_dssp HEEEECSSC--CC-CSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHH
T ss_pred heEEEcCCC--cc-CCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHH
Confidence 24666653 34 45699999998765555556666665555421 112345568999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhhh
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~~ 631 (652)
+++|+|||||||||+||+++...+++.++.. +.|+|+||||++++.. ||+|++|++|++++ .|+++++++.
T Consensus 542 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~-~g~~~~l~~~ 614 (1284)
T 3g5u_A 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVE-QGNHDELMRE 614 (1284)
T ss_dssp HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCC-EECHHHHHHT
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 9999999999999999999999999999754 5699999999999977 99999999999974 6888876543
No 105
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=7.5e-35 Score=342.19 Aligned_cols=197 Identities=31% Similarity=0.532 Sum_probs=165.3
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec----ccceecccccc
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----LPNYFEQNQAE 499 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~----~~~~~~~~~~~ 499 (652)
.|...|++++|+++.+|+++||+|++|++++|+||||||||||+|+|+| |.| +|.+. ...|+.|+. .
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~~~~~~v~q~~-~ 505 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEECRTVYVEHDI-D 505 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTTSCEEETTCCC-C
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccccceeEEEEcccc-c
Confidence 4666799999999999999999999999999999999999999999994 322 22221 112333321 1
Q ss_pred cCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH
Q 006275 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579 (652)
Q Consensus 500 ~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~ 579 (652)
.+.+.+|+.+++....... ..++.++|+.+|+.....++++.+|||||||||+|||||+.+|+||||||||+|||+.++
T Consensus 506 ~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~ 584 (986)
T 2iw3_A 506 GTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNV 584 (986)
T ss_dssp CCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHH
T ss_pred ccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 3456789999997511111 456888999999965678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhHhh
Q 006275 580 EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVCFT 630 (652)
Q Consensus 580 ~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~~~ 630 (652)
..+.++|++.+.|||+||||++++..+||+|++|++|++..+.|+++++.+
T Consensus 585 ~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 585 AWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999998667999999999999999999999999999767899888764
No 106
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=334.74 Aligned_cols=198 Identities=23% Similarity=0.298 Sum_probs=163.9
Q ss_pred EeEEEEeCCe-eeeeeeeEEEECC-----CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCC
Q 006275 101 ENISKSYKGV-TVLKDVTWEVKKG-----EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (652)
Q Consensus 101 ~~ls~~y~~~-~vL~~vsl~i~~G-----e~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~ 174 (652)
++++++|++. ++++++||++.+| |+++|+||||||||||+++|+|+++|++|+.. ....++|++|++...+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~---~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI---PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC---CSCCEEEECSSCCCCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc---cCCcEEEecccccccC
Confidence 6778899764 5899999999999 88999999999999999999999999999842 2457999999987667
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccccc
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (652)
..||++++...+.. .......+.++++.+|+. +..+
T Consensus 427 ~~tv~e~~~~~~~~-------------------------------------------~~~~~~~~~~~l~~l~l~-~~~~ 462 (608)
T 3j16_B 427 PGTVRQLFFKKIRG-------------------------------------------QFLNPQFQTDVVKPLRID-DIID 462 (608)
T ss_dssp CSBHHHHHHHHCSS-------------------------------------------TTTSHHHHHHTHHHHTST-TTSS
T ss_pred CccHHHHHHHHhhc-------------------------------------------ccccHHHHHHHHHHcCCh-hhhc
Confidence 78999886421100 000012344677888886 6789
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEc
Q 006275 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETE 330 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~ii~l~ 330 (652)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+ +.|+|||+||||++++..+||||++++
T Consensus 463 ~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999998887764 358999999999999999999999998
Q ss_pred C--CeEEEecCChHHHHH
Q 006275 331 M--GVSRTYEGNYSQYVL 346 (652)
Q Consensus 331 ~--G~~~~~~g~~~~~~~ 346 (652)
+ |++ ...|++.+++.
T Consensus 543 ~~~g~~-~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKN-AHARAPESLLT 559 (608)
T ss_dssp EETTTE-EECCCCEEHHH
T ss_pred CCCCeE-EecCChHHHhh
Confidence 6 555 56787776654
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.98 E-value=2.4e-32 Score=316.16 Aligned_cols=194 Identities=23% Similarity=0.294 Sum_probs=132.7
Q ss_pred CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHH---------------------HHHhCCCCCCe-------eEEEECcee
Q 006275 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLL---------------------KLIMGLEKPRG-------GEVLLGEHN 487 (652)
Q Consensus 436 ~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl---------------------~~l~g~~~p~~-------G~i~~~g~~ 487 (652)
...+|+||||+|++||++||+||||||||||+ +++.|+.+|+. |.|.+++.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 89999999984 455555543
Q ss_pred cc------cceeccc-----------------ccccCCCCCCHHHHHHHhhhh------cc--------HHHHHHHHhhC
Q 006275 488 VL------PNYFEQN-----------------QAEALDLDKTVLETVAEAAED------WR--------IDDIKGLLGRC 530 (652)
Q Consensus 488 ~~------~~~~~~~-----------------~~~~~~~~~tv~e~~~~~~~~------~~--------~~~~~~~L~~~ 530 (652)
.. .+++.|. +.....+.+|+.+|+...... .. ..+..+.++.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 21 1111111 111123457888887653210 00 01122458889
Q ss_pred CCChhhhccCcCCCCHHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHh
Q 006275 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQ 605 (652)
Q Consensus 531 ~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~ 605 (652)
|+.....++++.+|||||||||+|||||+.+|+ ||||||||+|||+.++..+.++|+++ +.|||+||||++++.
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~- 268 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML- 268 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-
Confidence 986444689999999999999999999999998 99999999999999999999998765 569999999999876
Q ss_pred hccEEEEE------eCCEEEeecCChhhHhhh
Q 006275 606 IVNRVVEV------KGSNLQDYAGDYNVCFTS 631 (652)
Q Consensus 606 ~~drvi~l------~~g~i~~~~g~~~~~~~~ 631 (652)
.||||++| ++|+++ +.|++++..+.
T Consensus 269 ~~d~ii~l~~g~~~~~G~i~-~~g~~~~~~~~ 299 (670)
T 3ux8_A 269 AADYLIDIGPGAGIHGGEVV-AAGTPEEVMND 299 (670)
T ss_dssp HCSEEEEECSSSGGGCCSEE-EEECHHHHHTC
T ss_pred hCCEEEEecccccccCCEEE-EecCHHHHhcC
Confidence 59999999 889987 46888776543
No 108
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=1e-28 Score=287.93 Aligned_cols=240 Identities=14% Similarity=0.154 Sum_probs=151.0
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHH-HHcC-------CCCCCcEEE-----------
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI-IAGQ-------EEPDSGNVI----------- 155 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~-L~G~-------~~p~~G~i~----------- 155 (652)
...|+++|+++ .+|+||||+|++|++++|+|+||||||||+++ |+|. .+|+.|.+.
T Consensus 500 ~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 500 AGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp SCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred CceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 35699999986 26999999999999999999999999999996 7644 456666652
Q ss_pred -ECC---CCceEEEEeccCccC-CCC------CHHHHHHHhhHHHHHHHHHHHHHH-H--H-------Hhhh--------
Q 006275 156 -KAK---SNMKIAFLSQEFEVS-MSR------TVREEFMSAFKEEMEIAGKLERVQ-K--A-------LESA-------- 206 (652)
Q Consensus 156 -~~~---~~~~i~~v~Q~~~~~-~~~------Tv~e~i~~~~~~~~~~~~~~~~~~-~--~-------~~~~-------- 206 (652)
..| .-.++.++.|.+.-. +.. .+++.+...|..... .+...+. . . ++.|
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~--~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPL--AKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHH--HHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChH--HHhcCCccccccccccccccccccCCCccch
Confidence 222 112366888876321 111 233444322211000 0000000 0 0 0000
Q ss_pred -----cc-------------hh---------HHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCC
Q 006275 207 -----VD-------------DM---------DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (652)
Q Consensus 207 -----~~-------------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~ 259 (652)
.. .. ..+.+.+.. ........+.......++.++++.+|+.....++++.+
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~l--tv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~ 730 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLAL--TVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATE 730 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTC--BHHHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCGGG
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhc--cHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCCccc
Confidence 00 00 000000000 00000011111111246778999999974456889999
Q ss_pred CChHHHHHHHHHHHHccC---CCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEE----
Q 006275 260 FSSGWQMRMSLGKILLQD---PDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET---- 329 (652)
Q Consensus 260 LSGGqkqRv~LAraL~~~---p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ii~l---- 329 (652)
|||||||||+||++|+.+ |+||||||||+|||+..++.|.++|+ +.|.|||+||||++++ ..||+|++|
T Consensus 731 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~ 809 (842)
T 2vf7_A 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGA 809 (842)
T ss_dssp CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSS
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCC
Confidence 999999999999999996 79999999999999999999988764 4699999999999999 789999999
Q ss_pred --cCCeEEEecCChHHHH
Q 006275 330 --EMGVSRTYEGNYSQYV 345 (652)
Q Consensus 330 --~~G~~~~~~g~~~~~~ 345 (652)
++|++ .+.|+++++.
T Consensus 810 g~~~G~I-v~~g~~~el~ 826 (842)
T 2vf7_A 810 GEDGGRL-VAQGTPAEVA 826 (842)
T ss_dssp GGGCCSE-EEEECHHHHT
T ss_pred CCCCCEE-EEEcCHHHHH
Confidence 57777 5678877654
No 109
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-32 Score=300.78 Aligned_cols=208 Identities=12% Similarity=0.073 Sum_probs=161.9
Q ss_pred CcEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee-E-EEECceec-ccceeccccc
Q 006275 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-E-VLLGEHNV-LPNYFEQNQA 498 (652)
Q Consensus 422 ~~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G-~-i~~~g~~~-~~~~~~~~~~ 498 (652)
.++++++||++.|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |.++|..- ..++++|...
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 45688999999985 79999999999999999999999999999999999999 8 99987321 1235555432
Q ss_pred c-cCCCCCCHHHHHHHhhhh----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHH--HccCCCe----EEE
Q 006275 499 E-ALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKF--MVKPSTL----LVL 567 (652)
Q Consensus 499 ~-~~~~~~tv~e~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAra--l~~~p~l----LlL 567 (652)
. ......++.+|+ +.... .....+..++..+|+. +..+ +.+|||||||||+|||| |+.+|++ |||
T Consensus 190 l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~-~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLE-RINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSS-SGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCC-cccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 1 123346777777 43211 1112345677888885 3334 78999999999999999 9999999 999
Q ss_pred eC-CCCCCCHHHHHHHHHHHHhcCceEEEEecCHH------HHHhhccE-----EEEEe-CCEEEeecCChhhHhhhcCC
Q 006275 568 DE-PTNHLDIPSKEMLEEAISEYKGTVITVSHDRY------FVKQIVNR-----VVEVK-GSNLQDYAGDYNVCFTSFSP 634 (652)
Q Consensus 568 DE-Pt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~------~i~~~~dr-----vi~l~-~g~i~~~~g~~~~~~~~~~~ 634 (652)
|| ||++||+. ...+.+++++++.|+|+|+||.+ ++..+||| |++|+ +|+++ .|+.++..+..
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~~~~~~-- 340 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVYKRSLQ-- 340 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHHHHHHH--
T ss_pred eCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHHHhhhh--
Confidence 99 99999999 88888999988889999999987 88899999 99999 99987 57776543221
Q ss_pred cccccchhHHHh
Q 006275 635 FLLVPLRSYFFK 646 (652)
Q Consensus 635 ~~~~~~~~~~~~ 646 (652)
...++.||+.
T Consensus 341 --~~~i~~~f~g 350 (460)
T 2npi_A 341 --RTSIREYFYG 350 (460)
T ss_dssp --HHHHHHHHHC
T ss_pred --HHHHHHHhCC
Confidence 2235666654
No 110
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-32 Score=302.34 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=157.5
Q ss_pred CCceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCc-E-EEECCC-CceEEEEeccCc
Q 006275 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-N-VIKAKS-NMKIAFLSQEFE 171 (652)
Q Consensus 95 ~~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G-~-i~~~~~-~~~i~~v~Q~~~ 171 (652)
.++++++|++|.|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |.+++. ...++|++|++.
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 45688999999995 79999999999999999999999999999999999999 8 998863 346999999974
Q ss_pred c---CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 172 V---SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 172 ~---~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
+ ....|+++|+ ..... ........++.+++..+|+
T Consensus 190 l~~~~~~~tv~eni-~~~~~-----------------------------------------~~~~~~~~~~~~ll~~~gl 227 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSL-----------------------------------------TSGATLLHNKQPMVKNFGL 227 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBC-----------------------------------------BSSCCSSCCBCCEECCCCS
T ss_pred hcccccccchhhhh-ccccc-----------------------------------------ccCcchHHHHHHHHHHhCC
Confidence 3 3446888776 21000 0000001123456788888
Q ss_pred CcccccCCCCCCChHHHHHHHHHHH--HccCCCe----EEEeC-CCCCCCHHHHHHHHHHHccCCCeEEEEecCHH----
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKI--LLQDPDL----LLLDE-PTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA---- 317 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAra--L~~~p~i----LLLDE-Pts~LD~~~~~~l~~~L~~~g~tvIivsHd~~---- 317 (652)
.. ..+ +.+|||||||||+|||| |+.+|++ ||||| ||++||+. .+.|.+++++.++|+|+|+|+.+
T Consensus 228 ~~-~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~ 303 (460)
T 2npi_A 228 ER-INE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLW 303 (460)
T ss_dssp SS-GGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHH
T ss_pred Cc-ccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhh
Confidence 63 333 78999999999999999 9999999 99999 99999999 88888888888999999999987
Q ss_pred --HHHhhcCe-----EEEEc-CCeEEEecCChHH
Q 006275 318 --FLDQLCTK-----IVETE-MGVSRTYEGNYSQ 343 (652)
Q Consensus 318 --~l~~~~d~-----ii~l~-~G~~~~~~g~~~~ 343 (652)
++..+||+ |++|+ +|++. .|+..+
T Consensus 304 ~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~ 335 (460)
T 2npi_A 304 EKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVY 335 (460)
T ss_dssp HHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHH
T ss_pred HHHHHHhcccccCCEEEEEeCCCcEE--ECCHHH
Confidence 78899999 99999 89874 677544
No 111
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=3.8e-28 Score=265.15 Aligned_cols=222 Identities=14% Similarity=0.134 Sum_probs=141.6
Q ss_pred eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC--------------------------------------CCCc
Q 006275 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--------------------------------------PDSG 152 (652)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~--------------------------------------p~~G 152 (652)
.++++++|++++| +++|+|+|||||||||++|.++.. +..|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 6899999999999 999999999999999999977764 3467
Q ss_pred EEEECCCCc-----------eEEEEeccCccCCCCCHHHH--HHHhhHHH--HHHHHHHHHHHHHH---hhhcchh----
Q 006275 153 NVIKAKSNM-----------KIAFLSQEFEVSMSRTVREE--FMSAFKEE--MEIAGKLERVQKAL---ESAVDDM---- 210 (652)
Q Consensus 153 ~i~~~~~~~-----------~i~~v~Q~~~~~~~~Tv~e~--i~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~---- 210 (652)
++.++|... .+++++|+..+... +..+. ++..+... ......+..+.+.. .......
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 888887542 28999998755432 22211 11111000 00000011111111 0000000
Q ss_pred -------HHHHhhHHHHHHH---HHHHHhCChhcHHHHHHHHhhhcCCCcccc----------------------c----
Q 006275 211 -------DLMGRLLDEFDLL---QRKAQAVNLDTLDAKVSKLMPELGFTADDG----------------------D---- 254 (652)
Q Consensus 211 -------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~----------------------~---- 254 (652)
+.+..+.++.... ...........+...+.+.+..+++..... .
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0000011111000 000000112344566777777777642100 0
Q ss_pred ---CCCCC-CChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeE
Q 006275 255 ---RLVAS-FSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (652)
Q Consensus 255 ---~~~~~-LSGGqkqRv~LAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i 326 (652)
+++.. |||||||||+||++|+.+| ++|||||||+|||+.++.+|.++|++ .|+|||+|||+++++ .+||++
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i 365 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHH 365 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeE
Confidence 23333 6999999999999999999 99999999999999999999998865 379999999999887 679999
Q ss_pred EEE----cCCeEE
Q 006275 327 VET----EMGVSR 335 (652)
Q Consensus 327 i~l----~~G~~~ 335 (652)
++| ++|++.
T Consensus 366 ~~l~k~~~~G~~~ 378 (415)
T 4aby_A 366 YKVEKQVEDGRTV 378 (415)
T ss_dssp EEEEEEEETTEEE
T ss_pred EEEEEeccCCceE
Confidence 999 888874
No 112
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=5.5e-28 Score=283.87 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=93.5
Q ss_pred HHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEE
Q 006275 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (652)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p---~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvI 310 (652)
.+..++|..+|+.....++++.+|||||||||+|||||+.+| +||||||||+|||+.+++.|.++|+ +.|.|||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 456678899999655568889999999999999999999876 6999999999999999999988764 4699999
Q ss_pred EEecCHHHHHhhcCeEEEE------cCCeEEEecCChHHHHH
Q 006275 311 IISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 311 ivsHd~~~l~~~~d~ii~l------~~G~~~~~~g~~~~~~~ 346 (652)
+||||++++. .||+|++| ++|++ ++.|+++++..
T Consensus 863 vI~HdL~~i~-~ADrIivLgp~gg~~~G~I-v~~Gtpeel~~ 902 (916)
T 3pih_A 863 VIEHNLDVIK-NADHIIDLGPEGGKEGGYI-VATGTPEEIAK 902 (916)
T ss_dssp EECCCHHHHT-TCSEEEEEESSSGGGCCEE-EEEESHHHHHS
T ss_pred EEeCCHHHHH-hCCEEEEecCCCCCCCCEE-EEEcCHHHHHh
Confidence 9999999985 59999999 77776 58898877653
No 113
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.95 E-value=3.3e-28 Score=283.87 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=92.6
Q ss_pred HHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEE
Q 006275 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (652)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p---~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIi 311 (652)
++.++++.+|+.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+ +.|.|||+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999744678999999999999999999999875 9999999999999999999988764 46999999
Q ss_pred EecCHHHHHhhcCeEEEE------cCCeEEEecCChHHHHH
Q 006275 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (652)
Q Consensus 312 vsHd~~~l~~~~d~ii~l------~~G~~~~~~g~~~~~~~ 346 (652)
||||++++ ..||+|++| ++|++ .+.|+++++..
T Consensus 904 isHdl~~i-~~aDrIivL~p~gG~~~G~I-v~~g~~~el~~ 942 (972)
T 2r6f_A 904 IEHNLDVI-KTADYIIDLGPEGGDRGGQI-VAVGTPEEVAE 942 (972)
T ss_dssp ECCCHHHH-TTCSEEEEECSSSTTSCCSE-EEEESHHHHHT
T ss_pred EcCCHHHH-HhCCEEEEEcCCCCCCCCEE-EEecCHHHHHh
Confidence 99999998 589999999 56776 56788777643
No 114
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=6.6e-28 Score=282.25 Aligned_cols=240 Identities=17% Similarity=0.216 Sum_probs=151.6
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHH-c----CCC---CCCcEE-EECCCC--ceEE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA-G----QEE---PDSGNV-IKAKSN--MKIA 164 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~-G----~~~---p~~G~i-~~~~~~--~~i~ 164 (652)
..|++++++. .+|+||||+|++|++++|+|+||||||||+++|+ | .+. +..|.+ .+.|.. .++.
T Consensus 646 ~~L~v~~l~~-----~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i 720 (993)
T 2ygr_A 646 RQLTVVGARE-----HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLV 720 (993)
T ss_dssp SEEEEEEECS-----TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEE
T ss_pred ceEEEecCcc-----ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEE
Confidence 4699999862 3699999999999999999999999999999853 2 222 245654 444421 2466
Q ss_pred EEeccCcc-CCCCC------HHHHHHHhhHHHHHHHHHHHHHH-HH---------Hhhhcch------------------
Q 006275 165 FLSQEFEV-SMSRT------VREEFMSAFKEEMEIAGKLERVQ-KA---------LESAVDD------------------ 209 (652)
Q Consensus 165 ~v~Q~~~~-~~~~T------v~e~i~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~------------------ 209 (652)
++.|.|.- .+..+ +++.+...|..... .+...+. .. ++.|..+
T Consensus 721 ~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~--ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 721 RIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNE--AKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp CCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHH--HHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EecCcccccCcccchhhhhhHHHHHHHHhccCHH--HHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 77787631 11112 23333222211000 0000000 00 0000000
Q ss_pred --------hH---------HHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHH
Q 006275 210 --------MD---------LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272 (652)
Q Consensus 210 --------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAr 272 (652)
.+ .+...++. ........+.......+..++++.+|+.....++++.+|||||||||+||+
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~l--tv~e~l~~~~~~~~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAr 876 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDM--SIEEAAEFFEPIAGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLAS 876 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSS--BHHHHHHHSTTCHHHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhc--cHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHH
Confidence 00 00000000 000000001100112345678999999643678899999999999999999
Q ss_pred HHccCC---CeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEE------cCCeEEEecCC
Q 006275 273 ILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGN 340 (652)
Q Consensus 273 aL~~~p---~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~ii~l------~~G~~~~~~g~ 340 (652)
+|+.+| +||||||||+|||+.++..|.++|+ +.|.|||+||||++++ ..||+|++| ++|++ .+.|+
T Consensus 877 aL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~I-v~~G~ 954 (993)
T 2ygr_A 877 ELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTV-VAQGT 954 (993)
T ss_dssp HHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEE-EEEEC
T ss_pred HHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEE-EEecC
Confidence 999875 9999999999999999999988764 4699999999999998 589999999 56776 57788
Q ss_pred hHHHHH
Q 006275 341 YSQYVL 346 (652)
Q Consensus 341 ~~~~~~ 346 (652)
++++..
T Consensus 955 ~~el~~ 960 (993)
T 2ygr_A 955 PEDVAA 960 (993)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777643
No 115
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=2.5e-27 Score=258.73 Aligned_cols=76 Identities=20% Similarity=0.214 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEE----eC
Q 006275 544 LSGGEKARLAFCKFMVKPS--TLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEV----KG 615 (652)
Q Consensus 544 LSgGqrqrv~LAral~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drvi~l----~~ 615 (652)
|||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++. .|||+||||++++ .+||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 6999999999999999999 9999999999999999999999999874 6999999999887 579999999 89
Q ss_pred CEEEe
Q 006275 616 SNLQD 620 (652)
Q Consensus 616 g~i~~ 620 (652)
|++..
T Consensus 375 G~~~~ 379 (415)
T 4aby_A 375 GRTVS 379 (415)
T ss_dssp TEEEE
T ss_pred CceEE
Confidence 98753
No 116
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=7.2e-26 Score=243.25 Aligned_cols=82 Identities=23% Similarity=0.317 Sum_probs=74.6
Q ss_pred ccCCCCCCChHHHHHHHHHHHHc------cCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 006275 253 GDRLVASFSSGWQMRMSLGKILL------QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~------~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~ 323 (652)
.++++.+|||||||||+||+||+ .+|++|||||||+|||+.++.++.++|+ +.|.|||+||||+++ ...|
T Consensus 273 ~~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTC
T ss_pred cCCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhC
Confidence 35788999999999999999999 7999999999999999999999988764 458999999999998 4789
Q ss_pred CeEEEEcCCeEE
Q 006275 324 TKIVETEMGVSR 335 (652)
Q Consensus 324 d~ii~l~~G~~~ 335 (652)
|+|++|++|++.
T Consensus 352 d~~~~l~~G~i~ 363 (365)
T 3qf7_A 352 DRKLRITGGVVV 363 (365)
T ss_dssp SCEEEEETTEEC
T ss_pred CEEEEEECCEEE
Confidence 999999999874
No 117
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=4.1e-28 Score=240.41 Aligned_cols=144 Identities=22% Similarity=0.234 Sum_probs=96.5
Q ss_pred EeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC-------CCCceEEEEeccCccCCCCCH
Q 006275 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-------KSNMKIAFLSQEFEVSMSRTV 178 (652)
Q Consensus 106 ~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~-------~~~~~i~~v~Q~~~~~~~~Tv 178 (652)
+|+++.+|++| ++|++++|+||||||||||+++|+|+ +|++|+|... .....|||++|++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 35566789986 89999999999999999999999999 9999988431 0123588888875
Q ss_pred HHHH-HHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCC
Q 006275 179 REEF-MSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (652)
Q Consensus 179 ~e~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~ 257 (652)
+||+ .. +... ...+.. ... ..++.++++. |+
T Consensus 76 ~enl~~~-~~~~----------~~~~~~-----------------------~~~----~~~~~~~l~~-gl--------- 107 (208)
T 3b85_A 76 NEKIDPY-LRPL----------HDALRD-----------------------MVE----PEVIPKLMEA-GI--------- 107 (208)
T ss_dssp ----CTT-THHH----------HHHHTT-----------------------TSC----TTHHHHHHHT-TS---------
T ss_pred HHHHHHH-HHHH----------HHHHHH-----------------------hcc----HHHHHHHHHh-CC---------
Confidence 3444 11 0000 000000 000 1123334333 32
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 006275 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (652)
Q Consensus 258 ~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~ 320 (652)
||||||+|||||+.+|++|||||||++ ++..+.++|++ .|+||| ||||++++.
T Consensus 108 -----Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 108 -----VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVD 162 (208)
T ss_dssp -----EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC-----
T ss_pred -----chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHh
Confidence 999999999999999999999999999 78888887764 478999 999998774
No 118
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=2e-25 Score=235.99 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=75.7
Q ss_pred ccCCCCCCChHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeE
Q 006275 253 GDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~----~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i 326 (652)
.++++.+||||||||++||+||+ .+|++|||||||++||+..++.+.++|++ .+.|||+|||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 56678999999999999999997 68999999999999999999999988754 3789999999975 45789987
Q ss_pred --EEEcCCeEEEecCChHH
Q 006275 327 --VETEMGVSRTYEGNYSQ 343 (652)
Q Consensus 327 --i~l~~G~~~~~~g~~~~ 343 (652)
+++.+|.......+.++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 88899987666555444
No 119
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=1e-25 Score=216.34 Aligned_cols=144 Identities=13% Similarity=0.098 Sum_probs=97.1
Q ss_pred eeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCC-CCCHHHHHHHhhHHHHHHH
Q 006275 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM-SRTVREEFMSAFKEEMEIA 193 (652)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~-~~Tv~e~i~~~~~~~~~~~ 193 (652)
||||+|++|++++|+||||||||||++++.+- ...++. +.-.++++|++.... ..++++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~~~~-d~~~g~~~~~~~~~~~~~~~~~~~~---------- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEVISS-DFCRGLMSDDENDQTVTGAAFDVLH---------- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGEEEH-HHHHHHHCSSTTCGGGHHHHHHHHH----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeEEcc-HHHHHHhcCcccchhhHHHHHHHHH----------
Confidence 68999999999999999999999999986532 111211 111255566542110 001111100
Q ss_pred HHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 006275 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273 (652)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAra 273 (652)
... ......|.. ...+. ....|||||||++||||
T Consensus 64 -------------------------------------------~~~-~~~~~~g~~-~~~~~-~~~~s~g~~qrv~iAra 97 (171)
T 4gp7_A 64 -------------------------------------------YIV-SKRLQLGKL-TVVDA-TNVQESARKPLIEMAKD 97 (171)
T ss_dssp -------------------------------------------HHH-HHHHHTTCC-EEEES-CCCSHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHH-HHHHhCCCe-EEEEC-CCCCHHHHHHHHHHHHH
Confidence 000 001112332 22233 35669999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHH----------------HHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 006275 274 LLQDPDLLLLDEPTNHLDLD----------------TIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 274 L~~~p~iLLLDEPts~LD~~----------------~~~~l~~~L~---~~g~tvIivsHd~~~l~~ 321 (652)
++.+|++|+|||||++||+. ....+.+.|+ +.|.|+|+||||++++..
T Consensus 98 l~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 98 YHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp TTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred cCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 99999999999999999999 5577777753 359999999999999965
No 120
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=2.5e-25 Score=213.60 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=98.5
Q ss_pred ceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHH
Q 006275 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (652)
Q Consensus 442 ~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~ 521 (652)
|+||+|++||+++|+||||||||||++++.+-. ..+.. +...+++.++..... ...++++++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~------~~~~~-d~~~g~~~~~~~~~~-~~~~~~~~~~~-------- 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT------EVISS-DFCRGLMSDDENDQT-VTGAAFDVLHY-------- 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG------GEEEH-HHHHHHHCSSTTCGG-GHHHHHHHHHH--------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC------eEEcc-HHHHHHhcCcccchh-hHHHHHHHHHH--------
Confidence 689999999999999999999999999865321 11211 111233333221110 00111121111
Q ss_pred HHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHH----------------HHHHHHHH
Q 006275 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP----------------SKEMLEEA 585 (652)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~----------------~~~~l~~~ 585 (652)
........+... . .......|+|||||++||||++.+|++|+|||||++||+. ....+.+.
T Consensus 65 -~~~~~~~~g~~~-~-~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~ 141 (171)
T 4gp7_A 65 -IVSKRLQLGKLT-V-VDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKS 141 (171)
T ss_dssp -HHHHHHHTTCCE-E-EESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHhCCCeE-E-EECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhh
Confidence 111122334321 2 2344567999999999999999999999999999999999 55777887
Q ss_pred HHhc---CceEEEEecCHHHHHhhccEE
Q 006275 586 ISEY---KGTVITVSHDRYFVKQIVNRV 610 (652)
Q Consensus 586 l~~~---~~tvi~vsHd~~~i~~~~drv 610 (652)
|++. +.|+|+||||++++.. ++++
T Consensus 142 l~~l~~~g~tvi~vtH~~~~~~~-~~~~ 168 (171)
T 4gp7_A 142 IKGLQREGFRYVYILNSPEEVEE-VVFE 168 (171)
T ss_dssp STTHHHHTCSEEEEECSHHHHHH-EEEE
T ss_pred hhhHHhcCCcEEEEeCCHHHhhh-hhhc
Confidence 5433 5699999999999976 4443
No 121
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.91 E-value=9.9e-24 Score=226.59 Aligned_cols=81 Identities=26% Similarity=0.434 Sum_probs=75.0
Q ss_pred ccCcCCCCHHHHHHHHHHHHHc------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcc
Q 006275 538 DRKVSLLSGGEKARLAFCKFMV------KPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVN 608 (652)
Q Consensus 538 ~~~~~~LSgGqrqrv~LAral~------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d 608 (652)
++++.+|||||||||+|||||+ .+|++|||||||++||+.++..+.+.|+++ +.|||+||||+++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5788899999999999999999 799999999999999999999999999875 4699999999998 46799
Q ss_pred EEEEEeCCEEE
Q 006275 609 RVVEVKGSNLQ 619 (652)
Q Consensus 609 rvi~l~~g~i~ 619 (652)
++++|++|+++
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999999985
No 122
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.91 E-value=3.1e-25 Score=214.49 Aligned_cols=135 Identities=12% Similarity=0.121 Sum_probs=101.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCC-CcEEEEC----CCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHH
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKA----KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p~-~G~i~~~----~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~ 199 (652)
+++|+||||||||||+++|+|++... .|...-. .....+||++|++ ++.++++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~~---------------- 59 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKIF---------------- 59 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET------TCCEEEE----------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC------cHHHHHH----------------
Confidence 68999999999999999999998521 2322110 1123578888875 1111110
Q ss_pred HHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCc-ccccCCCCCCChHHHHHHHHHHH-----
Q 006275 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA-DDGDRLVASFSSGWQMRMSLGKI----- 273 (652)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~-~~~~~~~~~LSGGqkqRv~LAra----- 273 (652)
..+++.. ...++++.+||||||||++||+|
T Consensus 60 --------------------------------------------~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~ 95 (178)
T 1ye8_A 60 --------------------------------------------SSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREA 95 (178)
T ss_dssp --------------------------------------------EETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------HhhcCCccccccccccCcCHHHHHHHHHHhhccccc
Confidence 0011110 24567789999999999999996
Q ss_pred HccCCCeEEEeC--CCCCCCHHHHHHHHHHHccCCCeEEEEe---cCHHHHHhhcCe
Q 006275 274 LLQDPDLLLLDE--PTNHLDLDTIEWLEGYLGKQDVPMVIIS---HDRAFLDQLCTK 325 (652)
Q Consensus 274 L~~~p~iLLLDE--Pts~LD~~~~~~l~~~L~~~g~tvIivs---Hd~~~l~~~~d~ 325 (652)
++.+|++||||| ||++||+...+.+.++|++.+.|+|++| ||++++..+|++
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 999999999999 9999999999999999988788888888 599999999998
No 123
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=9.1e-27 Score=230.72 Aligned_cols=148 Identities=15% Similarity=0.101 Sum_probs=96.4
Q ss_pred eEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee-----c--ccceecccccccCCCC
Q 006275 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----V--LPNYFEQNQAEALDLD 504 (652)
Q Consensus 432 ~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~-----~--~~~~~~~~~~~~~~~~ 504 (652)
++|+++.+|+++ ++||+++|+||||||||||+++|+|+ +|++|+|...... . ..+|++|+.
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 457777899996 89999999999999999999999999 9999998421100 0 122333332
Q ss_pred CCHHHHH-HHh-------hhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCH
Q 006275 505 KTVLETV-AEA-------AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576 (652)
Q Consensus 505 ~tv~e~~-~~~-------~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~ 576 (652)
.+|+ ... ........+.++++. + | ||||||+|||||+.+|+||||||||++
T Consensus 76 ---~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-g------------l--Gq~qrv~lAraL~~~p~lllLDEPts~--- 134 (208)
T 3b85_A 76 ---NEKIDPYLRPLHDALRDMVEPEVIPKLMEA-G------------I--VEVAPLAYMRGRTLNDAFVILDEAQNT--- 134 (208)
T ss_dssp -------CTTTHHHHHHHTTTSCTTHHHHHHHT-T------------S--EEEEEGGGGTTCCBCSEEEEECSGGGC---
T ss_pred ---HHHHHHHHHHHHHHHHHhccHHHHHHHHHh-C------------C--chHHHHHHHHHHhcCCCEEEEeCCccc---
Confidence 3333 110 000111223344442 2 2 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEeCCEE
Q 006275 577 PSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 577 ~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~l~~g~i 618 (652)
++..+.++|+++ +.||| ||||++++.. ...+++|..
T Consensus 135 -~~~~l~~~l~~l~~g~tii-vtHd~~~~~~----~~~~~~G~~ 172 (208)
T 3b85_A 135 -TPAQMKMFLTRLGFGSKMV-VTGDITQVDL----PGGQKSGLR 172 (208)
T ss_dssp -CHHHHHHHHTTBCTTCEEE-EEEC----------------CCH
T ss_pred -cHHHHHHHHHHhcCCCEEE-EECCHHHHhC----cCCCCCcHH
Confidence 888999999876 35888 9999987754 334566654
No 124
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=8.5e-24 Score=223.42 Aligned_cols=89 Identities=29% Similarity=0.397 Sum_probs=74.5
Q ss_pred hccCcCCCCHHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEE
Q 006275 537 LDRKVSLLSGGEKARLAFCKFMV----KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRV 610 (652)
Q Consensus 537 ~~~~~~~LSgGqrqrv~LAral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drv 610 (652)
.+.++.+||+|||||++||+||+ .+|++|||||||++||+..+..+.+.|+++ +.|||+|||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 46678899999999999999997 689999999999999999999999999876 459999999975 55789987
Q ss_pred --EEEeCCEEEeecCChh
Q 006275 611 --VEVKGSNLQDYAGDYN 626 (652)
Q Consensus 611 --i~l~~g~i~~~~g~~~ 626 (652)
++|.+|.......+.+
T Consensus 292 ~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEESSSCEEEEECCC-
T ss_pred EEEEEeCCEEEEEEEEcc
Confidence 7888886654434433
No 125
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.88 E-value=2.4e-24 Score=208.19 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=100.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec----------ccceecccccccCCCCCCHHHHHHHhhhhccHH
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~----------~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~ 521 (652)
+++|+||||||||||+++|+|++. |.++|.+. ..++..|.. ++.+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~--------~~~~~~---------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT--------EGKKKI---------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET--------TCCEEE----------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC--------cHHHHH----------
Confidence 689999999999999999999985 22333211 112222211 111111
Q ss_pred HHHHHHhhCCCCh-hhhccCcCCCCHHHHHHHHHHHH-----HccCCCeEEEeC--CCCCCCHHHHHHHHHHHHhcCceE
Q 006275 522 DIKGLLGRCNFKA-DMLDRKVSLLSGGEKARLAFCKF-----MVKPSTLLVLDE--PTNHLDIPSKEMLEEAISEYKGTV 593 (652)
Q Consensus 522 ~~~~~L~~~~l~~-~~~~~~~~~LSgGqrqrv~LAra-----l~~~p~lLlLDE--Pt~~LD~~~~~~l~~~l~~~~~tv 593 (652)
+..+++.. ...++++.+||||||||++||+| ++.+|++||||| ||++||+...+.+.+.+.+.+.|+
T Consensus 59 -----~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~ 133 (178)
T 1ye8_A 59 -----FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNV 133 (178)
T ss_dssp -----EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEE
T ss_pred -----HHhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeE
Confidence 11122211 24567888999999999999996 999999999999 999999999999999999866678
Q ss_pred EEEe---cCHHHHHhhccEEEEEeCCEEEee
Q 006275 594 ITVS---HDRYFVKQIVNRVVEVKGSNLQDY 621 (652)
Q Consensus 594 i~vs---Hd~~~i~~~~drvi~l~~g~i~~~ 621 (652)
|++| ||++++..+|+| .+|++.++
T Consensus 134 i~~~H~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 134 VATIPIRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp EEECCSSCCSHHHHHHHTC----TTCEEEEC
T ss_pred EEEEccCCCchHHHHHHhc----CCcEEEEe
Confidence 8888 599999999998 44555543
No 126
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.88 E-value=3.6e-26 Score=247.78 Aligned_cols=171 Identities=11% Similarity=0.115 Sum_probs=129.9
Q ss_pred eeeeeeeeEEEECCC--------------------EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc-eEEEEec
Q 006275 110 VTVLKDVTWEVKKGE--------------------KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQ 168 (652)
Q Consensus 110 ~~vL~~vsl~i~~Ge--------------------~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~-~i~~v~Q 168 (652)
+.+|++|||+|++|+ ++||+||||||||||+|+|+|+++|++|+|.++|... +.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 458999999999999 9999999999999999999999999999998876432 2378999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++ .++..|++|++..... ..++.++++.+++
T Consensus 116 ~~-~~~~ltv~D~~g~~~~------------------------------------------------~~~~~~~L~~~~L 146 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGST------------------------------------------------NFPPDTYLEKMKF 146 (413)
T ss_dssp CS-SCTTEEEEECCCGGGS------------------------------------------------SCCHHHHHHHTTG
T ss_pred cc-ccCCeeehHhhcccch------------------------------------------------HHHHHHHHHHcCC
Confidence 85 3456677776421100 0123345566666
Q ss_pred CcccccCCCCCCChH--HHHHHHHHHHHcc----------CCCeEEEeCCCCCCCHHHHHHHHHHHc--------cC---
Q 006275 249 TADDGDRLVASFSSG--WQMRMSLGKILLQ----------DPDLLLLDEPTNHLDLDTIEWLEGYLG--------KQ--- 305 (652)
Q Consensus 249 ~~~~~~~~~~~LSGG--qkqRv~LAraL~~----------~p~iLLLDEPts~LD~~~~~~l~~~L~--------~~--- 305 (652)
.. . +..+. |||| |+||++||+||+. +|++++|||||+|||+..++.+.+.++ +.
T Consensus 147 ~~-~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 147 YE-Y-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp GG-C-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred Cc-c-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 42 2 33334 9999 9999999999999 999999999999999998887765542 22
Q ss_pred -CCeEEEEecCHHH--HHhhcCeEE-EEcCC
Q 006275 306 -DVPMVIISHDRAF--LDQLCTKIV-ETEMG 332 (652)
Q Consensus 306 -g~tvIivsHd~~~--l~~~~d~ii-~l~~G 332 (652)
..+|+++||+++. ++.+||+|. .+..|
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 2568889999987 889999886 34333
No 127
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.88 E-value=1.4e-25 Score=243.12 Aligned_cols=172 Identities=13% Similarity=0.162 Sum_probs=132.0
Q ss_pred CeeeeeceEEEEEcCe--------------------EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-cceec
Q 006275 436 DRLLFNRANLTIERGE--------------------KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-PNYFE 494 (652)
Q Consensus 436 ~~~vl~~isl~i~~Ge--------------------~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-~~~~~ 494 (652)
++.+|++|||+|++|+ ++||+||||||||||+++|+|+++|++|+|.++|.++. .+++.
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~ 114 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY 114 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEec
Confidence 3568999999999999 99999999999999999999999999999999886542 23444
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHH--HHHHHHHHHHHcc----------CC
Q 006275 495 QNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG--EKARLAFCKFMVK----------PS 562 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgG--qrqrv~LAral~~----------~p 562 (652)
|.. ..+..++.|++..... ...+.++++.+++. +. +..+. ||+| ||||++||++|+. +|
T Consensus 115 q~~---~~~~ltv~D~~g~~~~---~~~~~~~L~~~~L~-~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkp 185 (413)
T 1tq4_A 115 KHP---NIPNVVFWDLPGIGST---NFPPDTYLEKMKFY-EY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKV 185 (413)
T ss_dssp ECS---SCTTEEEEECCCGGGS---SCCHHHHHHHTTGG-GC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred ccc---ccCCeeehHhhcccch---HHHHHHHHHHcCCC-cc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecC
Confidence 431 2345566665543322 12356778888874 22 33344 9999 9999999999999 99
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc------------CceEEEEecCHHH--HHhhccEEE-EEeCC
Q 006275 563 TLLVLDEPTNHLDIPSKEMLEEAISEY------------KGTVITVSHDRYF--VKQIVNRVV-EVKGS 616 (652)
Q Consensus 563 ~lLlLDEPt~~LD~~~~~~l~~~l~~~------------~~tvi~vsHd~~~--i~~~~drvi-~l~~g 616 (652)
++|+|||||++||+.++..+.+.|+++ ..+|+++||+++. ++.+||++. .|..|
T Consensus 186 dlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 186 DSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred cccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 999999999999999999888877653 1368889999987 888998885 33334
No 128
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.88 E-value=4.1e-27 Score=245.39 Aligned_cols=163 Identities=12% Similarity=0.134 Sum_probs=123.0
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCC
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~ 176 (652)
.|+++||+|+|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|. +|++|++.++ ..
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~--------~~v~q~~~lf-~~ 167 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL--------SFANHKSHFW-LA 167 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE--------CGGGTTSGGG-GG
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE--------EEecCccccc-cc
Confidence 488999999998 77999999999999999999999999999999999998 89884 4678888764 45
Q ss_pred CHHH-HHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccC
Q 006275 177 TVRE-EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (652)
Q Consensus 177 Tv~e-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (652)
|+++ |+..... ..+ .+.+.++.+ ++ ...+
T Consensus 168 ti~~~ni~~~~~---------------------~~~--------------------------~~~~~i~~~-L~-~gld- 197 (305)
T 2v9p_A 168 SLADTRAALVDD---------------------ATH--------------------------ACWRYFDTY-LR-NALD- 197 (305)
T ss_dssp GGTTCSCEEEEE---------------------ECH--------------------------HHHHHHHHT-TT-GGGG-
T ss_pred cHHHHhhccCcc---------------------ccH--------------------------HHHHHHHHH-hH-ccCC-
Confidence 7776 6531100 000 011111111 11 1222
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCeEE
Q 006275 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 256 ~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~~~ 335 (652)
+..|||||||| ||||+.+|+||| |++||+.++..+.. +||+++.+ ..||+| +|++|++
T Consensus 198 -g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~i- 255 (305)
T 2v9p_A 198 -GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQ- 255 (305)
T ss_dssp -TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---C-
T ss_pred -ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEE-
Confidence 68999999999 999999999999 99999999887752 28998876 689999 9999988
Q ss_pred EecCChHHH
Q 006275 336 TYEGNYSQY 344 (652)
Q Consensus 336 ~~~g~~~~~ 344 (652)
.+.|+..++
T Consensus 256 v~~g~~~el 264 (305)
T 2v9p_A 256 PFNITDADW 264 (305)
T ss_dssp CCCCCHHHH
T ss_pred EEeCCHHHH
Confidence 477887664
No 129
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.87 E-value=5.8e-24 Score=222.34 Aligned_cols=173 Identities=18% Similarity=0.244 Sum_probs=132.4
Q ss_pred eCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------------ceEEEEeccC
Q 006275 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEF 170 (652)
Q Consensus 107 y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------------~~i~~v~Q~~ 170 (652)
++....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+ ..|+|++|++
T Consensus 84 l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~ 163 (302)
T 3b9q_A 84 LAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 163 (302)
T ss_dssp HCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC-
T ss_pred hCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecC
Confidence 333333467899999999999999999999999999999999999999987643 1489999998
Q ss_pred c-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 171 E-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 171 ~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
. ..+..|+++|+..+.. .. .+ ..+++.+|+.
T Consensus 164 ~~~~~~~~v~e~l~~~~~----------------~~------------------------~d--------~~lldt~gl~ 195 (302)
T 3b9q_A 164 DKAKAATVLSKAVKRGKE----------------EG------------------------YD--------VVLCDTSGRL 195 (302)
T ss_dssp -CCCHHHHHHHHHHHHHH----------------TT------------------------CS--------EEEECCCCCS
T ss_pred CccCHHHHHHHHHHHHHH----------------cC------------------------Cc--------chHHhcCCCC
Confidence 7 6677788888742100 00 00 1245667775
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEec---------CHHH
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH---------DRAF 318 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsH---------d~~~ 318 (652)
+..++++.+|| |||++||||++.+|+ +|+|| ||+|||+.... ..+-++.|.|+|++|| .++.
T Consensus 196 -~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~--~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 196 -HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp -SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred -cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH--HHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 44566788999 999999999999999 99999 99999998653 3333356899999999 6667
Q ss_pred HHhhcCeEEEEcCCeE
Q 006275 319 LDQLCTKIVETEMGVS 334 (652)
Q Consensus 319 l~~~~d~ii~l~~G~~ 334 (652)
+......|.++..|..
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 7777889999998864
No 130
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.86 E-value=4.1e-21 Score=204.30 Aligned_cols=78 Identities=26% Similarity=0.406 Sum_probs=68.3
Q ss_pred cccCCCCCCChHHHH------HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 006275 252 DGDRLVASFSSGWQM------RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 252 ~~~~~~~~LSGGqkq------Rv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~ 322 (652)
..++++.+||||||| |+++|+||+.+|++|||||||+|||+..+..+.++|+ +.+.|||+||||.+ +..+
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~ 319 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDA 319 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGG
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHh
Confidence 456788999999999 6788889999999999999999999999999988774 34779999999976 4589
Q ss_pred cCeEEEEc
Q 006275 323 CTKIVETE 330 (652)
Q Consensus 323 ~d~ii~l~ 330 (652)
||+|++++
T Consensus 320 ~d~~~~l~ 327 (339)
T 3qkt_A 320 ADHVIRIS 327 (339)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999885
No 131
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=7.2e-26 Score=235.99 Aligned_cols=163 Identities=16% Similarity=0.131 Sum_probs=120.1
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCC
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 503 (652)
.|+++||++.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|...+ .|. ..++
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v--------~q~--~~lf- 165 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFA--------NHK--SHFW- 165 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGG--------GTT--SGGG-
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEe--------cCc--cccc-
Confidence 488999999998 78999999999999999999999999999999999999 79985432 111 1111
Q ss_pred CCCHHH-HHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHH
Q 006275 504 DKTVLE-TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582 (652)
Q Consensus 504 ~~tv~e-~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l 582 (652)
..|+.+ |+.+... .. ..+.+.++.+ +. ...+ +..|||||||| |||++++|+||| |++||+.++..+
T Consensus 166 ~~ti~~~ni~~~~~-~~-~~~~~~i~~~-L~-~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i 232 (305)
T 2v9p_A 166 LASLADTRAALVDD-AT-HACWRYFDTY-LR-NALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRY 232 (305)
T ss_dssp GGGGTTCSCEEEEE-EC-HHHHHHHHHT-TT-GGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGG
T ss_pred cccHHHHhhccCcc-cc-HHHHHHHHHH-hH-ccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHH
Confidence 123333 3332211 11 1344555553 32 2233 77899999999 999999999999 999999998887
Q ss_pred HHHHHhcCceEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhhH
Q 006275 583 EEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNVC 628 (652)
Q Consensus 583 ~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~~ 628 (652)
.. +||++..+ ..||+| +|++|+++ ..|+.++.
T Consensus 233 ~~-----------ltH~~~~~-~~aD~i-vl~~G~iv-~~g~~~el 264 (305)
T 2v9p_A 233 LY-----------LHSRVQTF-RFEQPC-TDESGEQP-FNITDADW 264 (305)
T ss_dssp GG-----------GTTTEEEE-ECCCCC-CCC---CC-CCCCHHHH
T ss_pred HH-----------HhCCHHHH-HhCCEE-EEeCCEEE-EeCCHHHH
Confidence 52 29999876 579999 99999997 46777664
No 132
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.85 E-value=1.1e-20 Score=201.70 Aligned_cols=85 Identities=18% Similarity=0.063 Sum_probs=74.4
Q ss_pred cCCCC-CCChHHHHHHHHHHHHc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhc
Q 006275 254 DRLVA-SFSSGWQMRMSLGKILL---------QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 254 ~~~~~-~LSGGqkqRv~LAraL~---------~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~ 323 (652)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+++++.+.|+|++||. +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 55667 89999999999999999 8999999999999999999999999997766899999994 43 89
Q ss_pred CeEEEEcCCeEEEecCChHH
Q 006275 324 TKIVETEMGVSRTYEGNYSQ 343 (652)
Q Consensus 324 d~ii~l~~G~~~~~~g~~~~ 343 (652)
|+++++++|++. ..|+.++
T Consensus 335 ~~i~~l~~G~i~-~~g~~~~ 353 (359)
T 2o5v_A 335 ALTLRAQAGRFT-PVADEEM 353 (359)
T ss_dssp SEEEEEETTEEE-ECCCTTT
T ss_pred CEEEEEECCEEE-ecCCHHH
Confidence 999999999984 5566543
No 133
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.85 E-value=1.1e-24 Score=215.42 Aligned_cols=174 Identities=10% Similarity=-0.020 Sum_probs=105.0
Q ss_pred eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC------CCceEEEEeccCccCCCCCHHHHHH
Q 006275 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK------SNMKIAFLSQEFEVSMSRTVREEFM 183 (652)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~------~~~~i~~v~Q~~~~~~~~Tv~e~i~ 183 (652)
.++++| .+|++|++++|+||||||||||+++|+|+++...+.+.+.+ ....++|++|++..++.+|+.+++.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 347777 79999999999999999999999999999863332221111 1235889999875544444444431
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHH------hhhcCCCcccccCCC
Q 006275 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL------MPELGFTADDGDRLV 257 (652)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l------l~~lgl~~~~~~~~~ 257 (652)
.... ...++. .. .....+..+++.+. ++.+|+. ...++.+
T Consensus 87 ~~~~--------------~~~n~~----~~---------------g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~ 132 (207)
T 1znw_A 87 EWAE--------------IHGGLH----RS---------------GTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMP 132 (207)
T ss_dssp EEEE--------------EGGGTE----EE---------------EEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCT
T ss_pred eehh--------------hcCchh----hc---------------CCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcC
Confidence 0000 000000 00 00001112223332 3344442 3445666
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCC----CHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEE
Q 006275 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL----DLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVET 329 (652)
Q Consensus 258 ~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~L----D~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~ii~l 329 (652)
..|| ||+.+|++++|||||++| |+..++.+.++++ +.|.|+|+||||++++..+||+|+++
T Consensus 133 ~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 133 EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 7777 999999999999999998 6778888776653 35899999999999999999999987
Q ss_pred c
Q 006275 330 E 330 (652)
Q Consensus 330 ~ 330 (652)
.
T Consensus 202 ~ 202 (207)
T 1znw_A 202 T 202 (207)
T ss_dssp -
T ss_pred c
Confidence 4
No 134
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.85 E-value=6.5e-23 Score=218.54 Aligned_cols=166 Identities=19% Similarity=0.266 Sum_probs=131.0
Q ss_pred eeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------------ceEEEEeccCc-cCCCC
Q 006275 114 KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFE-VSMSR 176 (652)
Q Consensus 114 ~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------------~~i~~v~Q~~~-~~~~~ 176 (652)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.+.+.+ ..|+|++|++. ..+..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 46889999999999999999999999999999999999999987643 14899999987 66777
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCC
Q 006275 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (652)
Q Consensus 177 Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (652)
|+++|+..+.. .. .+ ..+++.+|+. +..++.
T Consensus 228 tv~e~l~~~~~----------------~~------------------------~d--------~~lldt~Gl~-~~~~~~ 258 (359)
T 2og2_A 228 VLSKAVKRGKE----------------EG------------------------YD--------VVLCDTSGRL-HTNYSL 258 (359)
T ss_dssp HHHHHHHHHHH----------------TT------------------------CS--------EEEEECCCCS-SCCHHH
T ss_pred hHHHHHHHHHh----------------CC------------------------CH--------HHHHHhcCCC-hhhhhH
Confidence 88888742100 00 00 0245666775 345667
Q ss_pred CCCCChHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEec---------CHHHHHhhcCe
Q 006275 257 VASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH---------DRAFLDQLCTK 325 (652)
Q Consensus 257 ~~~LSGGqkqRv~LAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsH---------d~~~l~~~~d~ 325 (652)
+.+|| |||++|||||+.+|+ +|+|| ||+|||+.... ..+-++.+.|+|++|| .+..+...+..
T Consensus 259 ~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~p 332 (359)
T 2og2_A 259 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIP 332 (359)
T ss_dssp HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCC
T ss_pred HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCC
Confidence 78899 999999999999999 99999 99999998653 2333346899999999 46677777889
Q ss_pred EEEEcCCeE
Q 006275 326 IVETEMGVS 334 (652)
Q Consensus 326 ii~l~~G~~ 334 (652)
|..+..|..
T Consensus 333 I~~ig~Ge~ 341 (359)
T 2og2_A 333 VKFIGVGEA 341 (359)
T ss_dssp EEEEECSSS
T ss_pred EEEEeCCCC
Confidence 999988864
No 135
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.84 E-value=2e-20 Score=210.00 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=69.4
Q ss_pred CCCCCC-ChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeEEEE
Q 006275 255 RLVASF-SSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (652)
Q Consensus 255 ~~~~~L-SGGqkqRv~LAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~ii~l 329 (652)
+++.+| ||||||||+||+||+.+| ++|||||||+|||+.++..+.++|++ .|.|||+|||+++.+. .||+++++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 456788 999999999999999999 99999999999999999999887743 2899999999999885 69999999
Q ss_pred cCCe
Q 006275 330 EMGV 333 (652)
Q Consensus 330 ~~G~ 333 (652)
.++.
T Consensus 471 ~~~~ 474 (517)
T 4ad8_A 471 EKQV 474 (517)
T ss_dssp ECCE
T ss_pred eccc
Confidence 6553
No 136
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.84 E-value=1.1e-22 Score=212.65 Aligned_cols=167 Identities=17% Similarity=0.109 Sum_probs=128.3
Q ss_pred eeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc----------------ceeccccccc-CC
Q 006275 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------------NYFEQNQAEA-LD 502 (652)
Q Consensus 440 l~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------------~~~~~~~~~~-~~ 502 (652)
+.++||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++.. .++.|+ .. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~--~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAE--GDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC----CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEec--CCccC
Confidence 356788999999999999999999999999999999999999998876521 123332 23 45
Q ss_pred CCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHH
Q 006275 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHLDIPSKE 580 (652)
Q Consensus 503 ~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~--lLlLDEPt~~LD~~~~~ 580 (652)
+..++.+++..+..... ...+++.+|+. +..++.+.+|| |||++||||++.+|+ +|+|| ||+|||+....
T Consensus 168 ~~~~v~e~l~~~~~~~~---d~~lldt~gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~ 239 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEGY---DVVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA 239 (302)
T ss_dssp HHHHHHHHHHHHHHTTC---SEEEECCCCCS-SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred HHHHHHHHHHHHHHcCC---cchHHhcCCCC-cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH
Confidence 55678888876432110 01246667764 45577888999 999999999999999 99999 99999998653
Q ss_pred HHHHHHHhcCceEEEEec---------CHHHHHhhccEEEEEeCCEE
Q 006275 581 MLEEAISEYKGTVITVSH---------DRYFVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 581 ~l~~~l~~~~~tvi~vsH---------d~~~i~~~~drvi~l~~g~i 618 (652)
.+.-++.+.|+|++|| .++.+..+...|.++..|+.
T Consensus 240 --~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 240 --REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp --HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred --HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 3333356779999999 66777777889999998864
No 137
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.84 E-value=4.7e-23 Score=225.82 Aligned_cols=177 Identities=12% Similarity=0.142 Sum_probs=136.4
Q ss_pred CceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------------
Q 006275 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------------- 160 (652)
+.++++++++.|+ +.++|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4689999999997 67799999 9999999999999999999999999999999999999988762
Q ss_pred ----ceEEEEecc-CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcH
Q 006275 161 ----MKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (652)
Q Consensus 161 ----~~i~~v~Q~-~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (652)
..++|++|. ....+..|+.+|+..... + +. . ..
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae-----------~---~~------------------------~-~~--- 246 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAE-----------D---FR------------------------D-RG--- 246 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHH-----------H---HH------------------------T-TT---
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHH-----------H---HH------------------------h-CC---
Confidence 258999995 333345566666542100 0 00 0 00
Q ss_pred HHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccC-------CC-
Q 006275 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ-------DV- 307 (652)
Q Consensus 236 ~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~-------g~- 307 (652)
..++ ...+. +..||+|| |||+|| +.+|++ |+|||+.....+.++|.+. |.
T Consensus 247 ----~~v~-------~~ld~-l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~Gsi 304 (438)
T 2dpy_A 247 ----QHVL-------LIMDS-LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSI 304 (438)
T ss_dssp ----CEEE-------EEEEC-HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEE
T ss_pred ----CCHH-------HHHHh-HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcc
Confidence 0000 11122 57799999 999999 889988 9999999999999988532 43
Q ss_pred ----eEEEEecCHHHHHhhcCeEEEEcCCeEEEecCC
Q 006275 308 ----PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGN 340 (652)
Q Consensus 308 ----tvIivsHd~~~l~~~~d~ii~l~~G~~~~~~g~ 340 (652)
||+++|||++ ..+||+++++.+|++. ..|+
T Consensus 305 T~~~tVlv~tHdl~--~~iad~v~~l~dG~Iv-l~~~ 338 (438)
T 2dpy_A 305 TAFYTVLTEGDDQQ--DPIADSARAILDGHIV-LSRR 338 (438)
T ss_dssp EEEEEEECSSSCSC--CHHHHHHHHHSSEEEE-ECHH
T ss_pred cceeEEEEeCCCcc--chhhceEEEEeCcEEE-EeCC
Confidence 8999999999 6789999999999874 4443
No 138
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.83 E-value=4.3e-24 Score=224.32 Aligned_cols=180 Identities=8% Similarity=0.067 Sum_probs=126.5
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEE-----------------------EECCCEEEEECCCCccHHHHHHHHHcCCCCCCcE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWE-----------------------VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~-----------------------i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~ 153 (652)
.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++|+.|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 589999999994 566666664 8999999999999999999999999999998664
Q ss_pred EEECCCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChh
Q 006275 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (652)
Q Consensus 154 i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (652)
..++|++|++.+++. |+++|+...... ... ..
T Consensus 121 -------~~v~~v~qd~~~~~~-t~~e~~~~~~~~----------------g~~------------------------~~ 152 (312)
T 3aez_A 121 -------PRVDLVTTDGFLYPN-AELQRRNLMHRK----------------GFP------------------------ES 152 (312)
T ss_dssp -------CCEEEEEGGGGBCCH-HHHHHTTCTTCT----------------TSG------------------------GG
T ss_pred -------CeEEEEecCccCCcc-cHHHHHHHHHhc----------------CCC------------------------hH
Confidence 368999999877666 888886310000 000 00
Q ss_pred cHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEe
Q 006275 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIIS 313 (652)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivs 313 (652)
.....+.++++.++ . ...+.++..|||||+||+++|+|++.+|+|||||||+..+|+.. ..+.+ ..+ .+|+|+
T Consensus 153 ~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~l~~---~~D-~~I~V~ 225 (312)
T 3aez_A 153 YNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LMVSD---LFD-FSLYVD 225 (312)
T ss_dssp BCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CCGGG---GCS-EEEEEE
T ss_pred HHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-HHHHH---hcC-cEEEEE
Confidence 01122334455555 2 23346678999999999999999999999999999999998622 11111 123 457778
Q ss_pred cCHHHHH-hhcCeEEEEcCCe
Q 006275 314 HDRAFLD-QLCTKIVETEMGV 333 (652)
Q Consensus 314 Hd~~~l~-~~~d~ii~l~~G~ 333 (652)
|+.+... ..++|.+.+.++.
T Consensus 226 a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 226 ARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp ECHHHHHHHHHHHHHHHTTTG
T ss_pred CCHHHHHHHHHHHHHHHHhcc
Confidence 8876643 3455655555443
No 139
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.82 E-value=1.8e-22 Score=213.66 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=105.5
Q ss_pred EEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCC
Q 006275 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506 (652)
Q Consensus 427 ~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~t 506 (652)
++++++ | .++++++||+|++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ... . .
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~--~~~-----~-~--- 216 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV--FKH-----H-K--- 216 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC--CSS-----C-S---
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc--ccc-----c-h---
Confidence 445555 5 458999999999999999999999999999999999999999999998853110 000 0 0
Q ss_pred HHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 006275 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586 (652)
Q Consensus 507 v~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 586 (652)
. .+++ .. . |||+||++|||||..+|++|||||||+ .+ +.++|
T Consensus 217 ----------~-----------~i~~----~~----g--gg~~~r~~la~aL~~~p~ilildE~~~---~e----~~~~l 258 (330)
T 2pt7_A 217 ----------N-----------YTQL----FF----G--GNITSADCLKSCLRMRPDRIILGELRS---SE----AYDFY 258 (330)
T ss_dssp ----------S-----------EEEE----EC----B--TTBCHHHHHHHHTTSCCSEEEECCCCS---TH----HHHHH
T ss_pred ----------h-----------EEEE----Ee----C--CChhHHHHHHHHhhhCCCEEEEcCCCh---HH----HHHHH
Confidence 0 0000 00 0 899999999999999999999999998 22 23344
Q ss_pred Hhc--Cc-eEEEEecCHHHHHhhccEEEEEeCCE
Q 006275 587 SEY--KG-TVITVSHDRYFVKQIVNRVVEVKGSN 617 (652)
Q Consensus 587 ~~~--~~-tvi~vsHd~~~i~~~~drvi~l~~g~ 617 (652)
+.. +. |+|+++|+.+ +...|||+++|.+|.
T Consensus 259 ~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 259 NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 332 33 7999999998 667799999998775
No 140
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.82 E-value=6.4e-24 Score=211.90 Aligned_cols=168 Identities=13% Similarity=0.062 Sum_probs=99.9
Q ss_pred eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-----------ceEEEEeccCccCCCCCH-
Q 006275 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFLSQEFEVSMSRTV- 178 (652)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-----------~~i~~v~Q~~~~~~~~Tv- 178 (652)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+ ..++|++|++..+...+.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999998 5 98887 321 246777777543211100
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCC
Q 006275 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (652)
Q Consensus 179 ~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~ 258 (652)
.++ ++... +... ... .....+.++++...+ ...+ .
T Consensus 87 ~~~---------------------l~~~~----~~~~-------------~~g--~~~~~i~~~l~~~~~--~il~---~ 121 (218)
T 1z6g_A 87 EDF---------------------LEYDN----YANN-------------FYG--TLKSEYDKAKEQNKI--CLFE---M 121 (218)
T ss_dssp TCE---------------------EEEEE----ETTE-------------EEE--EEHHHHHHHHHTTCE--EEEE---E
T ss_pred cch---------------------hhhhh----cccc-------------cCC--CcHHHHHHHHhCCCc--EEEE---e
Confidence 000 00000 0000 000 001123333333222 1122 6
Q ss_pred CCChHHHHHHHH-----HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----------CCCeEEEEecCHHHHHhhc
Q 006275 259 SFSSGWQMRMSL-----GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----------QDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 259 ~LSGGqkqRv~L-----AraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----------~g~tvIivsHd~~~l~~~~ 323 (652)
+|||||+||++| ||+|+.+|++++|||||+++|..+...+.+.|.+ ...+.|+++||++.+...+
T Consensus 122 ~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~ 201 (218)
T 1z6g_A 122 NINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQL 201 (218)
T ss_dssp CHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHH
Confidence 799999999999 8999999999999999999999887777665532 2455666666666666555
Q ss_pred CeEE
Q 006275 324 TKIV 327 (652)
Q Consensus 324 d~ii 327 (652)
++++
T Consensus 202 ~~ii 205 (218)
T 1z6g_A 202 KNYL 205 (218)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 141
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.81 E-value=1.1e-21 Score=209.06 Aligned_cols=166 Identities=17% Similarity=0.116 Sum_probs=127.1
Q ss_pred eceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc----------------ceeccccccc-CCC
Q 006275 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------------NYFEQNQAEA-LDL 503 (652)
Q Consensus 441 ~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------------~~~~~~~~~~-~~~ 503 (652)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++.. .++.|+ .. .++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~--~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAE--GDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCS--SSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEec--ccccCh
Confidence 35778899999999999999999999999999999999999998876521 122322 23 445
Q ss_pred CCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHH
Q 006275 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHLDIPSKEM 581 (652)
Q Consensus 504 ~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~--lLlLDEPt~~LD~~~~~~ 581 (652)
..++.+++..+...... ..+++.+|+. +..++.+.+|| |||++||||++.+|+ +|+|| ||+|||+.++.
T Consensus 226 ~~tv~e~l~~~~~~~~d---~~lldt~Gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~- 296 (359)
T 2og2_A 226 ATVLSKAVKRGKEEGYD---VVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA- 296 (359)
T ss_dssp HHHHHHHHHHHHHTTCS---EEEEECCCCS-SCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH-
T ss_pred hhhHHHHHHHHHhCCCH---HHHHHhcCCC-hhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH-
Confidence 56788888764321100 1245667764 44567788899 999999999999999 99999 99999988653
Q ss_pred HHHHHHhcCceEEEEec---------CHHHHHhhccEEEEEeCCEE
Q 006275 582 LEEAISEYKGTVITVSH---------DRYFVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 582 l~~~l~~~~~tvi~vsH---------d~~~i~~~~drvi~l~~g~i 618 (652)
.++-++.+.|+|++|| .+..+..+...|.++..|+.
T Consensus 297 -~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 297 -REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 3333345789999999 56777777889999988864
No 142
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.81 E-value=1.8e-19 Score=191.68 Aligned_cols=77 Identities=36% Similarity=0.584 Sum_probs=68.6
Q ss_pred hccCcCCCCHHHHH------HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhc
Q 006275 537 LDRKVSLLSGGEKA------RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIV 607 (652)
Q Consensus 537 ~~~~~~~LSgGqrq------rv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~ 607 (652)
.++++.+||||||| |+++|++++.+|++|||||||+|||+.++..+.++|+++ +.|||+||||.+ +..+|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhC
Confidence 46788999999999 678888999999999999999999999999999999865 349999999965 56789
Q ss_pred cEEEEEe
Q 006275 608 NRVVEVK 614 (652)
Q Consensus 608 drvi~l~ 614 (652)
|++++|+
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999986
No 143
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=6.1e-23 Score=202.86 Aligned_cols=162 Identities=10% Similarity=-0.046 Sum_probs=98.8
Q ss_pred eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec------ccceecccccccCCCCCCHHHH
Q 006275 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------LPNYFEQNQAEALDLDKTVLET 510 (652)
Q Consensus 437 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~------~~~~~~~~~~~~~~~~~tv~e~ 510 (652)
.++++| .+|++||+++|+||||||||||+++|+|+++...+.+.+.+.+. ..+|++|+.. .++.+++.++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~~~~~~ 84 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPT--RFQQLIDQGE 84 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHH--HHHHHHHTTC
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHH--HHHHHHhcCC
Confidence 457777 79999999999999999999999999999964333222111111 1223443321 1122222222
Q ss_pred HHHh----h--h--hccH----HHHHHH------HhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC
Q 006275 511 VAEA----A--E--DWRI----DDIKGL------LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (652)
Q Consensus 511 ~~~~----~--~--~~~~----~~~~~~------L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~ 572 (652)
+... . . .... +.+.+. ++.+|+ ....++++..|| +|+.+|++++|||||+
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~ 152 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGA-RAIKKTMPEAVT-----------VFLAPPSWQDLQARLI 152 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHH-HHHHHHCTTSEE-----------EEEECSCHHHHHHHHH
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHH-HHHHHhcCCcEE-----------EEEECCCHHHHHHHHH
Confidence 2100 0 0 0011 122222 444444 345567777787 8999999999999999
Q ss_pred CC----CHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEe
Q 006275 573 HL----DIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVK 614 (652)
Q Consensus 573 ~L----D~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~ 614 (652)
++ |+..++.+.++++++ +.|+|+||||++++..+||||++|.
T Consensus 153 ~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 153 GRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 98 677888888887654 4599999999999999999999984
No 144
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.81 E-value=1.5e-19 Score=192.80 Aligned_cols=86 Identities=17% Similarity=0.148 Sum_probs=76.4
Q ss_pred ccCcC-CCCHHHHHHHHHHHHHc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhc
Q 006275 538 DRKVS-LLSGGEKARLAFCKFMV---------KPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607 (652)
Q Consensus 538 ~~~~~-~LSgGqrqrv~LAral~---------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~ 607 (652)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..+.+.|.+...|+|++||. +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 45666 79999999999999999 8999999999999999999999999999877899999994 44 79
Q ss_pred cEEEEEeCCEEEeecCChhhH
Q 006275 608 NRVVEVKGSNLQDYAGDYNVC 628 (652)
Q Consensus 608 drvi~l~~g~i~~~~g~~~~~ 628 (652)
|++++|++|++.. .|++++.
T Consensus 335 ~~i~~l~~G~i~~-~g~~~~~ 354 (359)
T 2o5v_A 335 ALTLRAQAGRFTP-VADEEMQ 354 (359)
T ss_dssp SEEEEEETTEEEE-CCCTTTS
T ss_pred CEEEEEECCEEEe-cCCHHHH
Confidence 9999999999974 5776653
No 145
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.81 E-value=3.5e-21 Score=229.90 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=118.1
Q ss_pred CCceEEEe-----EEEEe-CCeeeeeeeeEEEEC-------CCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc
Q 006275 95 SSGVKLEN-----ISKSY-KGVTVLKDVTWEVKK-------GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161 (652)
Q Consensus 95 ~~~i~v~~-----ls~~y-~~~~vL~~vsl~i~~-------Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~ 161 (652)
.+.|+++| +++.| ++..+++|++|++++ |++++|+||||||||||||+| |++.+. .
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~----------a 816 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM----------A 816 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH----------H
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH----------h
Confidence 34699999 99999 667799999999987 999999999999999999999 988641 2
Q ss_pred eEE-EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHH
Q 006275 162 KIA-FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (652)
Q Consensus 162 ~i~-~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (652)
++| ||||++. ..|+.++++.
T Consensus 817 qiG~~Vpq~~~---~l~v~d~I~~-------------------------------------------------------- 837 (1022)
T 2o8b_B 817 QMGCYVPAEVC---RLTPIDRVFT-------------------------------------------------------- 837 (1022)
T ss_dssp TTTCCEESSEE---EECCCSBEEE--------------------------------------------------------
T ss_pred heeEEeccCcC---CCCHHHHHHH--------------------------------------------------------
Confidence 355 8999752 3455444321
Q ss_pred HHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH-HHHH---HHHcc-CCCeEEEEecC
Q 006275 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI-EWLE---GYLGK-QDVPMVIISHD 315 (652)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~-~~l~---~~L~~-~g~tvIivsHd 315 (652)
.+|+. +...+...++|+++++ +++|++++.+|+++|||||++|+|+... ..+. +.|.+ .|+++|++||+
T Consensus 838 ----rig~~-d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~ 911 (1022)
T 2o8b_B 838 ----RLGAS-DRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHY 911 (1022)
T ss_dssp ----ECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCC
T ss_pred ----HcCCH-HHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 11221 1122234677887775 9999999999999999999999998763 3333 33444 48999999999
Q ss_pred HHHHHhhcCeEEEEcCCeEE
Q 006275 316 RAFLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~~~ 335 (652)
.+++..+||++.++. |++.
T Consensus 912 ~el~~~~~d~~~v~~-g~~~ 930 (1022)
T 2o8b_B 912 HSLVEDYSQNVAVRL-GHMA 930 (1022)
T ss_dssp HHHHHHTSSCSSEEE-EEEE
T ss_pred HHHHHHhCCcceeec-CeEE
Confidence 999999999988764 6553
No 146
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.81 E-value=3.3e-22 Score=219.12 Aligned_cols=181 Identities=16% Similarity=0.148 Sum_probs=135.0
Q ss_pred cEEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECce---eccc--------
Q 006275 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NVLP-------- 490 (652)
Q Consensus 423 ~~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~---~~~~-------- 490 (652)
++++++++++.|+ +..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|++|.|.++|. ++..
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 3588999999997 67899999 999999999999999999999999999999999999999987 3311
Q ss_pred -------ceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC
Q 006275 491 -------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (652)
Q Consensus 491 -------~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~ 563 (652)
.++.|.. ....+..++.+++......+. . ..-.. ..+. ..+..||+|| |||+|| +.+|+
T Consensus 209 ~~l~r~i~~v~q~~-~~~~~~~~v~~~~~~~ae~~~-----~--~~~~v-~~~l-d~l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 209 DGRARSVVIAAPAD-VSPLLRMQGAAYATRIAEDFR-----D--RGQHV-LLIM-DSLTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp HHHHTEEEEEECTT-SCHHHHHHHHHHHHHHHHHHH-----T--TTCEE-EEEE-ECHHHHHHHH-HHHHHH---TTCCC
T ss_pred cccCceEEEEECCC-CCHHHHHHHHHHHHHHHHHHH-----h--CCCCH-HHHH-HhHHHHHHHH-HHHHHH---hCCCc
Confidence 2233321 112234456666554322110 0 00000 0112 2366799999 999999 88888
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcC------c------eEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhh
Q 006275 564 LLVLDEPTNHLDIPSKEMLEEAISEYK------G------TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNV 627 (652)
Q Consensus 564 lLlLDEPt~~LD~~~~~~l~~~l~~~~------~------tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~ 627 (652)
+ |+|||+.+...+.+++.+.. + ||+++|||++ ..+||++++|.+|+++. .++..+
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl-~~~~~~ 341 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVL-SRRLAE 341 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEE-CHHHHH
T ss_pred c------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEE-eCCHHH
Confidence 8 99999999999999998652 3 8999999998 67899999999999873 444443
No 147
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.80 E-value=6.9e-22 Score=209.28 Aligned_cols=141 Identities=12% Similarity=0.138 Sum_probs=106.3
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCCHH
Q 006275 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179 (652)
Q Consensus 100 v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~ 179 (652)
+++++| | .++++++||.|++|++++|+||||||||||+++|+|+++|++|.|.++|... ..+ ... +
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--------~~~-~~~--~ 216 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--------IVF-KHH--K 216 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--------CCC-SSC--S
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--------ccc-ccc--h
Confidence 344445 5 4589999999999999999999999999999999999999999999986431 000 000 0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCC
Q 006275 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (652)
Q Consensus 180 e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~ 259 (652)
+ .+++ +..
T Consensus 217 -~---------------------------------------------------------------~i~~--------~~g 224 (330)
T 2pt7_A 217 -N---------------------------------------------------------------YTQL--------FFG 224 (330)
T ss_dssp -S---------------------------------------------------------------EEEE--------ECB
T ss_pred -h---------------------------------------------------------------EEEE--------EeC
Confidence 0 0000 001
Q ss_pred CChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCCe
Q 006275 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (652)
Q Consensus 260 LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~G~ 333 (652)
|||+||++|||||..+|++|||||||+ .+..+.| +.+...+.|+|+++|+.+ +...|||++++.+|.
T Consensus 225 --gg~~~r~~la~aL~~~p~ilildE~~~---~e~~~~l-~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 225 --GNITSADCLKSCLRMRPDRIILGELRS---SEAYDFY-NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp --TTBCHHHHHHHHTTSCCSEEEECCCCS---THHHHHH-HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred --CChhHHHHHHHHhhhCCCEEEEcCCCh---HHHHHHH-HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 899999999999999999999999998 2333333 334433458999999999 668899999998875
No 148
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=7.4e-21 Score=213.91 Aligned_cols=169 Identities=11% Similarity=0.069 Sum_probs=123.0
Q ss_pred ceEEEeEEEEeCC-eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCC
Q 006275 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (652)
Q Consensus 97 ~i~v~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~ 175 (652)
.++++++++.|++ ..+| +..|++|++++|+|+||||||||+++|+|..+|. |+ .-+.|++|++..
T Consensus 257 ~~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-------~vi~~~~ee~~~--- 322 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-------RAILFAYEESRA--- 322 (525)
T ss_dssp CCCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-------CEEEEESSSCHH---
T ss_pred ccccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-------CEEEEEEeCCHH---
Confidence 3566777766643 2233 3489999999999999999999999999998874 53 124566676410
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccC
Q 006275 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (652)
Q Consensus 176 ~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (652)
.+.++.. ... ++ .+ + +...|+. ...+.
T Consensus 323 -~l~~~~~---------------------~~g----------------------~~---~~----~-~~~~g~~-~~~~~ 349 (525)
T 1tf7_A 323 -QLLRNAY---------------------SWG----------------------MD---FE----E-MERQNLL-KIVCA 349 (525)
T ss_dssp -HHHHHHH---------------------TTS----------------------CC---HH----H-HHHTTSE-EECCC
T ss_pred -HHHHHHH---------------------HcC----------------------CC---HH----H-HHhCCCE-EEEEe
Confidence 1111110 000 00 00 1 1122332 34566
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHH-----HHHHHHHH---HccCCCeEEEEecCH----------H
Q 006275 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD-----TIEWLEGY---LGKQDVPMVIISHDR----------A 317 (652)
Q Consensus 256 ~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~-----~~~~l~~~---L~~~g~tvIivsHd~----------~ 317 (652)
.+.+|||||+||+++|+++..+|++||+| ||++||.. .++.+.++ +++.|+|||+|||+. .
T Consensus 350 ~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~ 428 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS 428 (525)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc
Confidence 78999999999999999999999999999 99999998 77776655 456799999999999 7
Q ss_pred HHHhhcCeEEEEcCCe
Q 006275 318 FLDQLCTKIVETEMGV 333 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~ 333 (652)
.+..+||+|++|++|.
T Consensus 429 ~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 429 HISTITDTIILLQYVE 444 (525)
T ss_dssp CCTTTCSEEEEEEEEE
T ss_pred ccceeeeEEEEEEEEE
Confidence 8888999999998876
No 149
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.80 E-value=5.1e-22 Score=204.46 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=90.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHH
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~ 197 (652)
.++|+||||||||||+++|+|+..|++|+|.++|.+ ..++|++|++.+.+.+||.||+..+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~--------- 74 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQI--------- 74 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCS---------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhc---------
Confidence 489999999999999999999999999999887642 3699999998887788999886421100
Q ss_pred HHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 006275 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277 (652)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~ 277 (652)
.. .... +.+.+.+. ....++.+.+||||||||+++|||++.
T Consensus 75 ------~~-~~~~--------------------------~~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~- 115 (270)
T 3sop_A 75 ------NN-ENCW--------------------------EPIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC- 115 (270)
T ss_dssp ------BC-TTCS--------------------------HHHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE-
T ss_pred ------cc-HHHH--------------------------HHHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee-
Confidence 00 0000 00001100 012233457899999999999999886
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006275 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (652)
Q Consensus 278 p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (652)
+++||||+.+||+...+.+. .|++. ++||+|.|..+.+
T Consensus 116 --lllldep~~gL~~lD~~~l~-~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 116 --LYFISPTGHSLRPLDLEFMK-HLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp --EEEECCCSSSCCHHHHHHHH-HHHTT-SEEEEEETTGGGS
T ss_pred --eEEEecCCCcCCHHHHHHHH-HHHhc-CcEEEEEeccccC
Confidence 99999999999998865554 44444 8999998875543
No 150
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.80 E-value=1e-22 Score=213.85 Aligned_cols=174 Identities=13% Similarity=0.062 Sum_probs=127.6
Q ss_pred EEEEEeeeeEeCCeeeeeceEEE-----------------------EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeE
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLT-----------------------IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~-----------------------i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~ 480 (652)
.|+++||++.|+ ++++++++. +++|+++||+||||||||||+++|+|+++|..|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 589999999995 566776664 8999999999999999999999999999997663
Q ss_pred EEECceecccceecccccccCCCCCCHHHHHHHhh-----hhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHH
Q 006275 481 VLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAA-----EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555 (652)
Q Consensus 481 i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~-----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LA 555 (652)
...+++.|+ ..+.+. |+.+|+.... .......+.+.|+.++ . ...+.++..|||||+||+++|
T Consensus 121 -------~~v~~v~qd--~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~a 188 (312)
T 3aez_A 121 -------PRVDLVTTD--GFLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPGA 188 (312)
T ss_dssp -------CCEEEEEGG--GGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEEE
T ss_pred -------CeEEEEecC--ccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhhH
Confidence 112445543 234444 8888875421 1223455677777776 2 334567789999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHH-hhccEEEEEeCC
Q 006275 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVK-QIVNRVVEVKGS 616 (652)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~-~~~drvi~l~~g 616 (652)
++++.+|+|||||||+..+|... ..+.++-..+|+|+|+.+.+. .+.+|.+.+.++
T Consensus 189 ~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 189 EQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred HHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998622 123344446788899987754 345666655544
No 151
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.80 E-value=4.9e-22 Score=198.25 Aligned_cols=158 Identities=13% Similarity=0.144 Sum_probs=103.9
Q ss_pred eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc-----------cceecccccccCCCCCC
Q 006275 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNYFEQNQAEALDLDKT 506 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~~~~~~~~~~~~~~~t 506 (652)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |.|.+ |.++. ..|++|+..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~-------- 78 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKT-------- 78 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHH--------
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHH--------
Confidence 4689999999999999999999999999999999999 6 99988 65431 112222210
Q ss_pred HHHHHHH----------hhhh--ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHH-----HHHHccCCCeEEEeC
Q 006275 507 VLETVAE----------AAED--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF-----CKFMVKPSTLLVLDE 569 (652)
Q Consensus 507 v~e~~~~----------~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~L-----Aral~~~p~lLlLDE 569 (652)
.+..... .... .....+.++++.... ...+ .+|||||+||++| ||+++.+|++++|||
T Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~--~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde 153 (218)
T 1z6g_A 79 IFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKI--CLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS 153 (218)
T ss_dssp HHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCE--EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred HHHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCc--EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence 1111110 0000 112345666665432 1222 4689999999999 899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----------CceEEEEecCHHHHHhhccEEEE
Q 006275 570 PTNHLDIPSKEMLEEAISEY----------KGTVITVSHDRYFVKQIVNRVVE 612 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~----------~~tvi~vsHd~~~i~~~~drvi~ 612 (652)
||+++|..+...+.+.+.+. ..+.|+|+||++.+...+++++.
T Consensus 154 ~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 154 RLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 99999999988888877532 24678888888888777776654
No 152
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.79 E-value=3.5e-21 Score=204.93 Aligned_cols=174 Identities=16% Similarity=0.214 Sum_probs=125.3
Q ss_pred CceEEEeEEEEeC-CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC--------------
Q 006275 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (652)
Q Consensus 96 ~~i~v~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------------- 160 (652)
+.++++++++.|+ +.++++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.+
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 4588999999997 67899999 9999999999999999999999999999999999988876643
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHH
Q 006275 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (652)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
..+.+++|.. .+..+.+...+ ..+ .+
T Consensus 123 ~~~~~v~~~~~~~-----~~~~~r~~~~~--------------~~~------------------------------~~-- 151 (347)
T 2obl_A 123 TLSKCVLVVTTSD-----RPALERMKAAF--------------TAT------------------------------TI-- 151 (347)
T ss_dssp HHTTEEEEEECTT-----SCHHHHHHHHH--------------HHH------------------------------HH--
T ss_pred hhhceEEEEECCC-----CCHHHHHHHHH--------------HHH------------------------------HH--
Confidence 1245555432 11111111000 000 00
Q ss_pred HHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc-----CCC-----
Q 006275 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDV----- 307 (652)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~-----~g~----- 307 (652)
.+.+...|-.-...-..+..||+|| |||++| +.+|++ |+|||+.....+.+++++ .|.
T Consensus 152 --ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~ 219 (347)
T 2obl_A 152 --AEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIY 219 (347)
T ss_dssp --HHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEE
T ss_pred --HHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEE
Confidence 0000000100000113468899999 999999 688887 999999999999998853 355
Q ss_pred eEEEEecCHHHHHhhcCeEEEEcCCeEE
Q 006275 308 PMVIISHDRAFLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 308 tvIivsHd~~~l~~~~d~ii~l~~G~~~ 335 (652)
||+++|||++ ..+||+++.+.+|++.
T Consensus 220 tVl~~thdl~--~~i~d~v~~i~dG~Iv 245 (347)
T 2obl_A 220 TVLLESDNVN--DPIGDEVRSILDGHIV 245 (347)
T ss_dssp EEECCSSCCC--CHHHHHHHHHCSEEEE
T ss_pred EEEEeCCCCC--ChhhhheEEeeCcEEE
Confidence 8999999999 6899999999999884
No 153
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.79 E-value=2.8e-21 Score=205.63 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=129.7
Q ss_pred cEEEEEeeeeEeC-CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-----ceeccc
Q 006275 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----NYFEQN 496 (652)
Q Consensus 423 ~~i~~~~v~~~y~-~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-----~~~~~~ 496 (652)
.+++++++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.+... .+....
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 3588999999997 67899999 9999999999999999999999999999999999999888754210 010000
Q ss_pred -----ccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCC
Q 006275 497 -----QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (652)
Q Consensus 497 -----~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt 571 (652)
.......+.+..+.+...... ..+.+.+...+-.--..-..+..||+|| ||+++| +.+|++ |
T Consensus 123 ~~~~~v~~~~~~~~~~~~r~~~~~~~---~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t 189 (347)
T 2obl_A 123 TLSKCVLVVTTSDRPALERMKAAFTA---TTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------R 189 (347)
T ss_dssp HHTTEEEEEECTTSCHHHHHHHHHHH---HHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------B
T ss_pred hhhceEEEEECCCCCHHHHHHHHHHH---HHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------c
Confidence 000000112222222111100 0011111111100000115678899999 899999 688887 9
Q ss_pred CCCCHHHHHHHHHHHHhc-----Cc-----eEEEEecCHHHHHhhccEEEEEeCCEEEeecCChhh
Q 006275 572 NHLDIPSKEMLEEAISEY-----KG-----TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNV 627 (652)
Q Consensus 572 ~~LD~~~~~~l~~~l~~~-----~~-----tvi~vsHd~~~i~~~~drvi~l~~g~i~~~~g~~~~ 627 (652)
+|||+.....+.+++++. +. ||+++|||++ ..+||+++.|.+|+|+ ..++..+
T Consensus 190 ~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Iv-l~~~l~~ 252 (347)
T 2obl_A 190 GGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIV-LTRELAE 252 (347)
T ss_dssp TTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEE-BCHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEE-EeCCHHH
Confidence 999999999999999865 23 7999999998 6789999999999997 3444443
No 154
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.77 E-value=1.1e-19 Score=189.38 Aligned_cols=177 Identities=15% Similarity=0.105 Sum_probs=110.7
Q ss_pred eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEECceecccceecccc-cccCCCCCCHHHHHHHhh
Q 006275 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVLLGEHNVLPNYFEQNQ-AEALDLDKTVLETVAEAA 515 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G-~i~~~g~~~~~~~~~~~~-~~~~~~~~tv~e~~~~~~ 515 (652)
++|+++++.|++|++++|+||||||||||++.|+|...|.+| .|.+.+.......+.... ........+..+++....
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~ 102 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREI 102 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCC
Confidence 479999999999999999999999999999999999998877 665433222111000000 000001112222222111
Q ss_pred -hhcc-HHHHHHHHhhCCCChhhhccCcCCCCHHH-HHHHHHHHHHccCCCeEEEeCCCC---C---CCH-HHHHHHHHH
Q 006275 516 -EDWR-IDDIKGLLGRCNFKADMLDRKVSLLSGGE-KARLAFCKFMVKPSTLLVLDEPTN---H---LDI-PSKEMLEEA 585 (652)
Q Consensus 516 -~~~~-~~~~~~~L~~~~l~~~~~~~~~~~LSgGq-rqrv~LAral~~~p~lLlLDEPt~---~---LD~-~~~~~l~~~ 585 (652)
.... ...+.++++..++. ....+..+|.+| +||+. |+++..+|++|||||||+ + +|. .....+.+.
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~ 178 (296)
T 1cr0_A 103 IENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTK 178 (296)
T ss_dssp HHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHH
Confidence 0000 11223344433331 233446789999 66666 999999999999999999 4 454 555666666
Q ss_pred HH----hcCceEEEEecCH--H--------------------HHHhhccEEEEEeCCEE
Q 006275 586 IS----EYKGTVITVSHDR--Y--------------------FVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 586 l~----~~~~tvi~vsHd~--~--------------------~i~~~~drvi~l~~g~i 618 (652)
|+ +.+.|||++||+. + .+.++||+|++|++|+.
T Consensus 179 L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 179 LKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 64 3467999999995 5 78889999999988764
No 155
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.77 E-value=7.8e-20 Score=218.32 Aligned_cols=165 Identities=18% Similarity=0.173 Sum_probs=115.3
Q ss_pred CCcEEEEEe-----eeeEe-CCeeeeeceEEEEEc-------CeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee
Q 006275 421 GRSVVTIKN-----LEFGY-EDRLLFNRANLTIER-------GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (652)
Q Consensus 421 ~~~~i~~~~-----v~~~y-~~~~vl~~isl~i~~-------Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (652)
..++|+++| |++.| ++..++++++|++++ |++++|+||||||||||||+| |++.+-.
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~a--------- 816 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMA--------- 816 (1022)
T ss_dssp SCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHH---------
T ss_pred CCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHh---------
Confidence 345799999 99999 667899999999987 999999999999999999999 9876421
Q ss_pred cccc-eecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEE
Q 006275 488 VLPN-YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (652)
Q Consensus 488 ~~~~-~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLl 566 (652)
..+ ++++... ..++.+++ +.++|.. +...+..+++|+++++ +++|++++.+|+++|
T Consensus 817 -qiG~~Vpq~~~-----~l~v~d~I---------------~~rig~~-d~~~~~~stf~~em~~-~a~al~la~~~sLlL 873 (1022)
T 2o8b_B 817 -QMGCYVPAEVC-----RLTPIDRV---------------FTRLGAS-DRIMSGESTFFVELSE-TASILMHATAHSLVL 873 (1022)
T ss_dssp -TTTCCEESSEE-----EECCCSBE---------------EEECC----------CHHHHHHHH-HHHHHHHCCTTCEEE
T ss_pred -heeEEeccCcC-----CCCHHHHH---------------HHHcCCH-HHHhhchhhhHHHHHH-HHHHHHhCCCCcEEE
Confidence 122 4444321 12222222 1233332 2233455678887775 999999999999999
Q ss_pred EeCCCCCCCHHHH-HHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEeCCEEE
Q 006275 567 LDEPTNHLDIPSK-EMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 567 LDEPt~~LD~~~~-~~l~~~l~~~----~~tvi~vsHd~~~i~~~~drvi~l~~g~i~ 619 (652)
|||||+|+|+... ..+..+|+.+ +.++|++||+.+++..++|++.+++ |++.
T Consensus 874 LDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~-g~~~ 930 (1022)
T 2o8b_B 874 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRL-GHMA 930 (1022)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE-EEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeec-CeEE
Confidence 9999999998874 4455555432 5699999999999999999998874 6665
No 156
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.77 E-value=7e-20 Score=190.75 Aligned_cols=180 Identities=21% Similarity=0.163 Sum_probs=109.1
Q ss_pred eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCc-EEEECCCCceEEEEeccCccCCCCCHHHHHHHhhHH
Q 006275 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE 188 (652)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G-~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~ 188 (652)
.++|+++++.|++|++++|+||||||||||++.|+|.+.|.+| .|. |+..+. +..+ +..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~---------~~~~e~------~~~~-~~~---- 81 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG---------LAMLEE------SVEE-TAE---- 81 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE---------EEESSS------CHHH-HHH----
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE---------EEeCcC------CHHH-HHH----
Confidence 3579999999999999999999999999999999999988877 443 332221 1111 100
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHH-HHH
Q 006275 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW-QMR 267 (652)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGq-kqR 267 (652)
++....... .......+ .. . .+...+..+.+.++++..++. .+..+.++|.+| +||
T Consensus 82 ---------r~~~~~~~~--~~~~~~~l-~~-~-------~~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~ 138 (296)
T 1cr0_A 82 ---------DLIGLHNRV--RLRQSDSL-KR-E-------IIENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAK 138 (296)
T ss_dssp ---------HHHHHHTTC--CGGGCHHH-HH-H-------HHHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHH
T ss_pred ---------HHHHHHcCC--Chhhcccc-cc-C-------CCCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHH
Confidence 000000000 00000000 00 0 000111223334444433321 222346789999 666
Q ss_pred HHHHHHHccCCCeEEEeCCCC---C---CCH-HHHHHHHHHH----ccCCCeEEEEecCH--H-----------------
Q 006275 268 MSLGKILLQDPDLLLLDEPTN---H---LDL-DTIEWLEGYL----GKQDVPMVIISHDR--A----------------- 317 (652)
Q Consensus 268 v~LAraL~~~p~iLLLDEPts---~---LD~-~~~~~l~~~L----~~~g~tvIivsHd~--~----------------- 317 (652)
+. |+++..+|++||+||||+ + +|. .....+.+.| ++.|+|||++||+. +
T Consensus 139 ~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~ 217 (296)
T 1cr0_A 139 LA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLR 217 (296)
T ss_dssp HH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC
T ss_pred HH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhc
Confidence 66 999999999999999999 4 454 4555555554 34599999999994 5
Q ss_pred ---HHHhhcCeEEEEcCCe
Q 006275 318 ---FLDQLCTKIVETEMGV 333 (652)
Q Consensus 318 ---~l~~~~d~ii~l~~G~ 333 (652)
.+.++||+|++|..|.
T Consensus 218 ~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 218 GSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp ---CHHHHCSEEEEEEEC-
T ss_pred ccHHhHhhCcEEEEEecCc
Confidence 7888999999998776
No 157
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.76 E-value=1e-19 Score=211.17 Aligned_cols=146 Identities=21% Similarity=0.182 Sum_probs=112.1
Q ss_pred CceEEEeEEEEe---CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-CCCcEEEECCCCceEEEEeccCc
Q 006275 96 SGVKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQEFE 171 (652)
Q Consensus 96 ~~i~v~~ls~~y---~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-p~~G~i~~~~~~~~i~~v~Q~~~ 171 (652)
..|+++++..-. ++..+++|+||+ |++++|+||||||||||||+|+|+.. +..|.+... ....+++++|
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa-~~~~i~~v~~--- 621 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDG--- 621 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCSE---
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh-hccceeeHHH---
Confidence 358888774322 335689999999 99999999999999999999999874 678875422 2345777776
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcc
Q 006275 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (652)
Q Consensus 172 ~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (652)
++...++.||+.
T Consensus 622 i~~~~~~~d~l~-------------------------------------------------------------------- 633 (765)
T 1ewq_A 622 IYTRIGASDDLA-------------------------------------------------------------------- 633 (765)
T ss_dssp EEEECCC-------------------------------------------------------------------------
T ss_pred hhccCCHHHHHH--------------------------------------------------------------------
Confidence 223445554431
Q ss_pred cccCCCCCCChHHHHHHHHHHHH--ccCCCeEEEeCC---CCCCCHHHH-HHHHHHHccCCCeEEEEecCHHHHHhhc
Q 006275 252 DGDRLVASFSSGWQMRMSLGKIL--LQDPDLLLLDEP---TNHLDLDTI-EWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 252 ~~~~~~~~LSGGqkqRv~LAraL--~~~p~iLLLDEP---ts~LD~~~~-~~l~~~L~~~g~tvIivsHd~~~l~~~~ 323 (652)
..+|+|+++++.+|+++ +.+|+++||||| |++||..+. ..+.+.|.+.|+|+|++||+.++. .+|
T Consensus 634 ------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~-~~~ 704 (765)
T 1ewq_A 634 ------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELT-ALG 704 (765)
T ss_dssp -------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH-TCC
T ss_pred ------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-Hhh
Confidence 23689999999999999 999999999999 999999886 457787766789999999999887 344
No 158
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.76 E-value=6.9e-21 Score=195.99 Aligned_cols=140 Identities=15% Similarity=0.158 Sum_probs=90.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-------ceecccccccCCCCCCHHHHHHHhhhhc---cHH
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-------NYFEQNQAEALDLDKTVLETVAEAAEDW---RID 521 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-------~~~~~~~~~~~~~~~tv~e~~~~~~~~~---~~~ 521 (652)
.++|+||||||||||+++|+|+..|++|+|.++|.++.. +++.|. ..+.+.+|+.|++.++.... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~--~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEE--GGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeec--CCCcCCceEEechhhhhhcccHHHHH
Confidence 489999999999999999999999999999999876522 233332 34555677877776653211 112
Q ss_pred HHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHH
Q 006275 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRY 601 (652)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~ 601 (652)
.+...+. ....+..+.+||||||||+++|||++. +++||||+++||+...+.+.. +.+. .+||+|.|..+
T Consensus 82 ~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~-L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 82 PIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKH-LSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHH-HHTT-SEEEEEETTGG
T ss_pred HHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHH-HHhc-CcEEEEEeccc
Confidence 2333333 345567778899999999999999886 999999999999988555444 4444 78888888876
Q ss_pred HH
Q 006275 602 FV 603 (652)
Q Consensus 602 ~i 603 (652)
.+
T Consensus 152 ~l 153 (270)
T 3sop_A 152 TM 153 (270)
T ss_dssp GS
T ss_pred cC
Confidence 44
No 159
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.76 E-value=4.3e-20 Score=187.26 Aligned_cols=166 Identities=12% Similarity=0.131 Sum_probs=101.2
Q ss_pred CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCCHHHHHHHhhH
Q 006275 108 KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187 (652)
Q Consensus 108 ~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~ 187 (652)
+++++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++.....++|++|+. ++...|+.+++.....
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~ 84 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKG 84 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTT
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc-CccccCHhHhhhhhcc
Confidence 4567999999999999999999999999999999999976 4443332234699999995 5567788887642110
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHH
Q 006275 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (652)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqR 267 (652)
. . .. .+.+ ..+ ...+.+.++.+. ...++++..||+||+||
T Consensus 85 ~--------------~-~~-~~~~-----------------~~~----~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r 124 (245)
T 2jeo_A 85 Q--------------Y-NF-DHPD-----------------AFD----NDLMHRTLKNIV---EGKTVEVPTYDFVTHSR 124 (245)
T ss_dssp C--------------C-CT-TSGG-----------------GBC----HHHHHHHHHHHH---TTCCEEECCEETTTTEE
T ss_pred C--------------C-CC-CCcc-----------------ccc----HHHHHHHHHHHH---CCCCeecccccccccCc
Confidence 0 0 00 0000 000 011122222221 23456678999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH-HhhcCeE
Q 006275 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL-DQLCTKI 326 (652)
Q Consensus 268 v~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l-~~~~d~i 326 (652)
+++ ++++.+|+++|||||...+|.. +.++ .+.+|+++||+...+ ..+++++
T Consensus 125 ~~~-~~~~~~~~~lilDg~~~~~~~~----l~~~---~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 125 LPE-TTVVYPADVVLFEGILVFYSQE----IRDM---FHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp CSS-CEEECCCSEEEEECTTTTTSHH----HHTT---CSEEEEEECCHHHHHHHHHHHHT
T ss_pred cCc-eEEecCCCEEEEeCccccccHH----HHHh---cCeEEEEECCHHHHHHHHHHHHH
Confidence 988 6888999999999999888864 2222 478999999974444 4455544
No 160
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.76 E-value=1.5e-20 Score=192.53 Aligned_cols=141 Identities=19% Similarity=0.229 Sum_probs=106.7
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCC-CcEEEECCCCceEEEEeccCccCCCC
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMKIAFLSQEFEVSMSR 176 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~-~G~i~~~~~~~~i~~v~Q~~~~~~~~ 176 (652)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.+ +.|++|.+..+
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~--i~~~~~~~~~~--- 74 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP--IEYVFKHKKSI--- 74 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS--CCSCCCCSSSE---
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc--ceeecCCccee---
Confidence 455666542 5899999 9999999999999999999999999999998 9999887654 34554432100
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCC
Q 006275 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (652)
Q Consensus 177 Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (652)
+ . -..+|+.
T Consensus 75 ---------v--------------------------------------------~-----------q~~~gl~------- 83 (261)
T 2eyu_A 75 ---------V--------------------------------------------N-----------QREVGED------- 83 (261)
T ss_dssp ---------E--------------------------------------------E-----------EEEBTTT-------
T ss_pred ---------e--------------------------------------------e-----------HHHhCCC-------
Confidence 0 0 0022322
Q ss_pred CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcC
Q 006275 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (652)
Q Consensus 257 ~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~ 331 (652)
..+| |++||+||..+|++||||||| |+++...+.+.. +.|.+|++++|+.+ +...||+++.+..
T Consensus 84 ~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 84 TKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp BSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 1222 899999999999999999999 999987766554 45899999999988 5578999887653
No 161
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.76 E-value=4.7e-18 Score=186.44 Aligned_cols=75 Identities=19% Similarity=0.372 Sum_probs=66.3
Q ss_pred CCCCCCChHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeEE
Q 006275 255 RLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~----~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~ii 327 (652)
+++..||||||||++||++|+ .+|++|||||||++||+..+..+.++|++ .+.++|+|||+...+ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 445679999999999999999 58999999999999999999999988854 367999999997765 6799999
Q ss_pred EEc
Q 006275 328 ETE 330 (652)
Q Consensus 328 ~l~ 330 (652)
.+.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 162
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.76 E-value=4e-20 Score=189.34 Aligned_cols=139 Identities=15% Similarity=0.180 Sum_probs=102.1
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEECceecccceecccccccCCC
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVLPNYFEQNQAEALDL 503 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~ 503 (652)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|.|.++|.++ .++.+... .+
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i--~~~~~~~~-~~-- 74 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI--EYVFKHKK-SI-- 74 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC--CSCCCCSS-SE--
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc--eeecCCcc-ee--
Confidence 455566543 5899999 9999999999999999999999999999998 99999988654 23322110 00
Q ss_pred CCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHH
Q 006275 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583 (652)
Q Consensus 504 ~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~ 583 (652)
.. . ..+++.. ..| |++||++|..+|++|+||||| |+++...+.
T Consensus 75 -----------v~-q---------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l 117 (261)
T 2eyu_A 75 -----------VN-Q---------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETAL 117 (261)
T ss_dssp -----------EE-E---------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH
T ss_pred -----------ee-H---------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH
Confidence 00 0 0233311 122 899999999999999999999 998876655
Q ss_pred HHHHhcCceEEEEecCHHHHHhhccEEEEE
Q 006275 584 EAISEYKGTVITVSHDRYFVKQIVNRVVEV 613 (652)
Q Consensus 584 ~~l~~~~~tvi~vsHd~~~i~~~~drvi~l 613 (652)
+.. ..+.+|++++|+.+ +..+|||++.|
T Consensus 118 ~~~-~~g~~vl~t~H~~~-~~~~~dri~~l 145 (261)
T 2eyu_A 118 RAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 145 (261)
T ss_dssp HHH-HTTCEEEEEECCSS-HHHHHHHHHHT
T ss_pred HHH-ccCCEEEEEeCcch-HHHHHHHHhhh
Confidence 544 34679999999987 45667776544
No 163
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.76 E-value=1.8e-18 Score=161.75 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=71.5
Q ss_pred ccCCCCCCChHHHHHHHHH------HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 006275 253 GDRLVASFSSGWQMRMSLG------KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LA------raL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~ 323 (652)
.++++.+||||||||++|| |||+.+|++|||||||+|||+.++.++.+.|++ .|.|||+||||.+ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 5788999999999999876 899999999999999999999999999888753 4789999999995 56899
Q ss_pred CeEEEE--cCCeE
Q 006275 324 TKIVET--EMGVS 334 (652)
Q Consensus 324 d~ii~l--~~G~~ 334 (652)
|+++++ ++|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45544
No 164
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.75 E-value=3.4e-18 Score=159.76 Aligned_cols=80 Identities=33% Similarity=0.538 Sum_probs=71.6
Q ss_pred hccCcCCCCHHHHHHHHHH------HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhc
Q 006275 537 LDRKVSLLSGGEKARLAFC------KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIV 607 (652)
Q Consensus 537 ~~~~~~~LSgGqrqrv~LA------ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~ 607 (652)
.++++.+||||||||++|| |||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||. .+..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence 4688999999999999876 8999999999999999999999999999999876 35999999999 466889
Q ss_pred cEEEEEe--CCE
Q 006275 608 NRVVEVK--GSN 617 (652)
Q Consensus 608 drvi~l~--~g~ 617 (652)
|++++|+ +|.
T Consensus 130 d~ii~l~~~~g~ 141 (148)
T 1f2t_B 130 DHVIRISLENGS 141 (148)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEcCCCe
Confidence 9999994 554
No 165
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.74 E-value=2e-17 Score=178.01 Aligned_cols=75 Identities=27% Similarity=0.433 Sum_probs=66.7
Q ss_pred CCCCCCChHHHHHH------HHHHHHccC-CCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCe
Q 006275 255 RLVASFSSGWQMRM------SLGKILLQD-PDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 255 ~~~~~LSGGqkqRv------~LAraL~~~-p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~ 325 (652)
+++..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|++ .+.+||+|||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567999999 999999999999999999999998864 2469999999987 5689999
Q ss_pred EEEEc
Q 006275 326 IVETE 330 (652)
Q Consensus 326 ii~l~ 330 (652)
+++++
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 166
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.74 E-value=2.3e-19 Score=178.78 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=46.8
Q ss_pred ChHHH-HHHHHHHHHcc-------CCCeEEEeCCCCCCCHH-------HH-----HHHH----HHHccCCCeEEEEec--
Q 006275 261 SSGWQ-MRMSLGKILLQ-------DPDLLLLDEPTNHLDLD-------TI-----EWLE----GYLGKQDVPMVIISH-- 314 (652)
Q Consensus 261 SGGqk-qRv~LAraL~~-------~p~iLLLDEPts~LD~~-------~~-----~~l~----~~L~~~g~tvIivsH-- 314 (652)
+++++ +.+..+++++. +|++++|||||++||+. .. ..+. ++.++.|+|||++||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 44433 33555555554 99999999999999983 11 1232 333456999999999
Q ss_pred --CHHHHHhhcCeEEEEcCCe
Q 006275 315 --DRAFLDQLCTKIVETEMGV 333 (652)
Q Consensus 315 --d~~~l~~~~d~ii~l~~G~ 333 (652)
+...+..+||+++.+++|.
T Consensus 181 ~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 181 ANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ---------CCSEEEEEEECT
T ss_pred cCcchhhHhhceEEEEEEecC
Confidence 5555989999999998753
No 167
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.73 E-value=1.2e-18 Score=205.84 Aligned_cols=155 Identities=16% Similarity=0.168 Sum_probs=109.4
Q ss_pred CcEEEEEeeeeEe-----CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHH--------hCCCCCCeeEEEECceec
Q 006275 422 RSVVTIKNLEFGY-----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--------MGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 422 ~~~i~~~~v~~~y-----~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l--------~g~~~p~~G~i~~~g~~~ 488 (652)
...|++++...-+ +++.++++++|++++|++++|+||||||||||||++ .|..-|..+... .
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~-~---- 703 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEV-S---- 703 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEE-E----
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccc-h----
Confidence 3457777765443 235789999999999999999999999999999999 666555443210 0
Q ss_pred ccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH--ccCCCeEE
Q 006275 489 LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM--VKPSTLLV 566 (652)
Q Consensus 489 ~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral--~~~p~lLl 566 (652)
.+. .++.++|.. +.....+|+|++++..+|+++ +.+|+++|
T Consensus 704 ---~~d------------------------------~i~~~ig~~----d~l~~~lStf~~e~~~~a~il~~a~~~sLlL 746 (934)
T 3thx_A 704 ---IVD------------------------------CILARVGAG----DSQLKGVSTFMAEMLETASILRSATKDSLII 746 (934)
T ss_dssp ---CCS------------------------------EEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred ---HHH------------------------------HHHHhcCch----hhHHHhHhhhHHHHHHHHHHHHhccCCcEEE
Confidence 000 112223321 222344888888888888888 99999999
Q ss_pred EeCCCCCCCHHHHHHH-HHHHH---h-cCceEEEEecCHHHHHhhccEEEEEeCCEEE
Q 006275 567 LDEPTNHLDIPSKEML-EEAIS---E-YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 567 LDEPt~~LD~~~~~~l-~~~l~---~-~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~ 619 (652)
|||||+|+|+.....+ ..+++ + .+.|+|++||+.+.. .+||++..+.+|++.
T Consensus 747 LDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 747 IDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp EESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEE
Confidence 9999999999887666 44433 2 356999999997665 689999888888875
No 168
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.73 E-value=1.7e-19 Score=175.70 Aligned_cols=140 Identities=18% Similarity=0.172 Sum_probs=99.4
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC--------CceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHH
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS--------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~--------~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~ 194 (652)
|++++|+||||||||||+++|+|+++ ++| |.++|. ..++||++|+.. . + ++++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g--~-~~~l------------ 61 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--G--T-RGPL------------ 61 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETT--S--C-EEEE------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecc--c--c-eehh------------
Confidence 78999999999999999999999998 889 776542 346899988741 1 0 0110
Q ss_pred HHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCc------ccccCCCCCCChHHHHHH
Q 006275 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA------DDGDRLVASFSSGWQMRM 268 (652)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~------~~~~~~~~~LSGGqkqRv 268 (652)
..+++.. +...++...+|+|||+++
T Consensus 62 -------------------------------------------------~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~ 92 (189)
T 2i3b_A 62 -------------------------------------------------SRVGLEPPPGKRECRVGQYVVDLTSFEQLAL 92 (189)
T ss_dssp -------------------------------------------------EECCCCCCSSSCCEESSSSEECHHHHHTTTT
T ss_pred -------------------------------------------------hcccccCCccccccccceEEEcchHHHHHHH
Confidence 1111110 123445678999999998
Q ss_pred -HHHH---HHccCCCeEEEeC--CCCCCCHHHHHHHHHHHccCCCeEE---EEecCH--HHHHhhcCeEEEEcCCeE
Q 006275 269 -SLGK---ILLQDPDLLLLDE--PTNHLDLDTIEWLEGYLGKQDVPMV---IISHDR--AFLDQLCTKIVETEMGVS 334 (652)
Q Consensus 269 -~LAr---aL~~~p~iLLLDE--Pts~LD~~~~~~l~~~L~~~g~tvI---ivsHd~--~~l~~~~d~ii~l~~G~~ 334 (652)
+|++ |++.+|+|||||| |++.+|....+.|.++|++...+|| .|||+. .+++++++ +.+|++
T Consensus 93 ~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~~----~~~~~i 165 (189)
T 2i3b_A 93 PVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRN----RKDVKV 165 (189)
T ss_dssp TTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHHHT----TCCSEE
T ss_pred HHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHHee----cCCcEE
Confidence 4455 6899999999999 9999999999999999986543442 345987 55555444 455554
No 169
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.73 E-value=2.6e-19 Score=181.49 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=99.0
Q ss_pred CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHh
Q 006275 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514 (652)
Q Consensus 435 ~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~ 514 (652)
+++.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++...-...++.+. .+...+++.+++...
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d---~~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQD---RFYKVLTAEQKAKAL 82 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGG---GGBCCCCHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCC---cCccccCHhHhhhhh
Confidence 4567999999999999999999999999999999999976 433322100012244443 244567888887653
Q ss_pred hh--------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 006275 515 AE--------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586 (652)
Q Consensus 515 ~~--------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 586 (652)
.. .+....+.+.|+.+ ....+.++..||+||+||+++ ++++.+|+++|||||....|.. +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l---~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l 150 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNI---VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------I 150 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHH---HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------H
T ss_pred ccCCCCCCcccccHHHHHHHHHHH---HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------H
Confidence 22 12233445555543 233467788999999999988 6888999999999998887753 2
Q ss_pred Hh-cCceEEEEecC-HHHHHhhccEEEEEeCCE
Q 006275 587 SE-YKGTVITVSHD-RYFVKQIVNRVVEVKGSN 617 (652)
Q Consensus 587 ~~-~~~tvi~vsHd-~~~i~~~~drvi~l~~g~ 617 (652)
.+ .+.+|+++||+ ......+++++ ++|+
T Consensus 151 ~~~~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 151 RDMFHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp HTTCSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred HHhcCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 22 35699999997 44445555544 5554
No 170
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.73 E-value=4.6e-18 Score=200.77 Aligned_cols=153 Identities=17% Similarity=0.144 Sum_probs=107.0
Q ss_pred ceEEEeEEEEe-----CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHH--------HcCCCCCCcEEEECCCCceE
Q 006275 97 GVKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII--------AGQEEPDSGNVIKAKSNMKI 163 (652)
Q Consensus 97 ~i~v~~ls~~y-----~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L--------~G~~~p~~G~i~~~~~~~~i 163 (652)
.|.+++...-+ ++..+++|++|++++|++++|+||||||||||||+| .|.+-|..+.. +
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------~ 702 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------V 702 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------E
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------c
Confidence 47777665433 234589999999999999999999999999999999 56554443221 1
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh
Q 006275 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (652)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (652)
+.+. +++
T Consensus 703 ~~~d-------------------------------------------------------------------------~i~ 709 (934)
T 3thx_A 703 SIVD-------------------------------------------------------------------------CIL 709 (934)
T ss_dssp ECCS-------------------------------------------------------------------------EEE
T ss_pred hHHH-------------------------------------------------------------------------HHH
Confidence 1111 011
Q ss_pred hhcCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCeEEEeCCCCCCCHHHHHHH----HHHHcc-CCCeEEEEecCH
Q 006275 244 PELGFTADDGDRLVASFSSGWQMRMSLGKIL--LQDPDLLLLDEPTNHLDLDTIEWL----EGYLGK-QDVPMVIISHDR 316 (652)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL--~~~p~iLLLDEPts~LD~~~~~~l----~~~L~~-~g~tvIivsHd~ 316 (652)
..+|+. +.....+|+|+++++.+|+++ +.+|+++||||||+|||+.....+ .+.|.+ .|+|+|++||+.
T Consensus 710 ~~ig~~----d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~ 785 (934)
T 3thx_A 710 ARVGAG----DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH 785 (934)
T ss_dssp EECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG
T ss_pred HhcCch----hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH
Confidence 222221 122356788888888888888 999999999999999999876555 344443 589999999997
Q ss_pred HHHHhhcCeEEEEcCCeEE
Q 006275 317 AFLDQLCTKIVETEMGVSR 335 (652)
Q Consensus 317 ~~l~~~~d~ii~l~~G~~~ 335 (652)
+.. .+||++..+.+|++.
T Consensus 786 el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 786 ELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp GGG-GGGGTCTTEEEEEEE
T ss_pred HHH-HHhcccceeEeeEEE
Confidence 766 789998888877653
No 171
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.73 E-value=8.5e-19 Score=206.46 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=99.3
Q ss_pred ceEEEeEEEEe-------CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-CCcEEEECCCCceEEEEec
Q 006275 97 GVKLENISKSY-------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSNMKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y-------~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-~~G~i~~~~~~~~i~~v~Q 168 (652)
.|.+++..--. ++..+++|++|++++|++++|+||||||||||||+|++..-. ..|.. +......++++.+
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-vpa~~~~i~~~d~ 718 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-VPAEEATIGIVDG 718 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-BSSSEEEEECCSE
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-ccchhhhhhHHHH
Confidence 46666654322 235689999999999999999999999999999999754211 11110 0000011221111
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCC
Q 006275 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (652)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (652)
++..+|+
T Consensus 719 -------------------------------------------------------------------------i~~~ig~ 725 (918)
T 3thx_B 719 -------------------------------------------------------------------------IFTRMGA 725 (918)
T ss_dssp -------------------------------------------------------------------------EEEEC--
T ss_pred -------------------------------------------------------------------------HHHhCCh
Confidence 1112222
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHH-H---HH-ccCCCeEEEEecCHHHHHhhc
Q 006275 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE-G---YL-GKQDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~-~---~L-~~~g~tvIivsHd~~~l~~~~ 323 (652)
. +...+..+++|+||+|++.++++ +.+|+++||||||+|||+.....+. . .| ++.|+|+|++||+.+.+ .+|
T Consensus 726 ~-d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~ 802 (918)
T 3thx_B 726 A-DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELE 802 (918)
T ss_dssp ---------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHH
T ss_pred H-HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHH
Confidence 1 12233457899999999999999 8999999999999999998766654 3 33 34689999999998776 455
Q ss_pred C
Q 006275 324 T 324 (652)
Q Consensus 324 d 324 (652)
|
T Consensus 803 ~ 803 (918)
T 3thx_B 803 K 803 (918)
T ss_dssp H
T ss_pred h
Confidence 4
No 172
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.72 E-value=3.6e-19 Score=179.67 Aligned_cols=71 Identities=8% Similarity=0.025 Sum_probs=52.5
Q ss_pred ChHHHHHHHHHHHHccCCCeEEEeCCCCCCC-----HHHHHHHHHHH---ccCCCeEEEEecCHHHH---------Hhhc
Q 006275 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-----LDTIEWLEGYL---GKQDVPMVIISHDRAFL---------DQLC 323 (652)
Q Consensus 261 SGGqkqRv~LAraL~~~p~iLLLDEPts~LD-----~~~~~~l~~~L---~~~g~tvIivsHd~~~l---------~~~~ 323 (652)
+.++..+...+..-..+|++++|||||++|| +..++.+.+++ ++.|+|||++||+.+.+ ..+|
T Consensus 119 ~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~ 198 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFI 198 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGG
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEe
Confidence 4455555555555568999999999999997 55555565554 55799999999999998 6788
Q ss_pred -CeEEEEcC
Q 006275 324 -TKIVETEM 331 (652)
Q Consensus 324 -d~ii~l~~ 331 (652)
|+|++|+.
T Consensus 199 aD~vi~l~~ 207 (251)
T 2ehv_A 199 ARGVIVLDL 207 (251)
T ss_dssp CSEEEEEEE
T ss_pred eeEEEEEee
Confidence 99999963
No 173
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=7.3e-20 Score=191.42 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=83.1
Q ss_pred EeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcC-CCCCCcEEEECCCC-------ceEEEEeccCcc
Q 006275 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ-EEPDSGNVIKAKSN-------MKIAFLSQEFEV 172 (652)
Q Consensus 101 ~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~-~~p~~G~i~~~~~~-------~~i~~v~Q~~~~ 172 (652)
.|++++|+++.++++++|+| +|+|+||+|||||+++|.|. +.|++| |.+.|.+ ..+++++|....
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---C
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCc
Confidence 47899999999999999998 99999999999999999998 888888 5543321 247888887665
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccc
Q 006275 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (652)
Q Consensus 173 ~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (652)
...+|++|+.... ..... ...+. .+...+. +.
T Consensus 75 ~~~ltv~Dt~g~~--~~~~~-------~e~~~-----------------------------~l~~~l~----------~~ 106 (301)
T 2qnr_A 75 KLRLTVVDTPGYG--DAINC-------RDCFK-----------------------------TIISYID----------EQ 106 (301)
T ss_dssp CEEEEEEEEC--------------------CT-----------------------------THHHHHH----------HH
T ss_pred ccCcchhhhhhhh--hhcCc-------HHHHH-----------------------------HHHHHHH----------HH
Confidence 5566777764211 00000 00000 0000000 11
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCC-CCHHHHHHHHHHHccCCCeEEEEecCHH
Q 006275 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH-LDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~-LD~~~~~~l~~~L~~~g~tvIivsHd~~ 317 (652)
.++++.++|||||||+.+|||++ +|++||||++ ||+...+.+..+-.+.+.++|+++||+.
T Consensus 107 ~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 107 FERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 23446789999999999999986 9999999985 9998865444432334778888999974
No 174
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.71 E-value=4.4e-17 Score=178.71 Aligned_cols=75 Identities=28% Similarity=0.402 Sum_probs=66.6
Q ss_pred cCcCCCCHHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC---ceEEEEecCHHHHHhhccEEE
Q 006275 539 RKVSLLSGGEKARLAFCKFMV----KPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTVITVSHDRYFVKQIVNRVV 611 (652)
Q Consensus 539 ~~~~~LSgGqrqrv~LAral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~vsHd~~~i~~~~drvi 611 (652)
+++..||||||||++||++|+ .+|++|||||||++||+..+..+.+.|.++. .++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 334569999999999999999 6899999999999999999999999998763 4999999997665 5799999
Q ss_pred EEe
Q 006275 612 EVK 614 (652)
Q Consensus 612 ~l~ 614 (652)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 175
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.71 E-value=8.3e-18 Score=169.61 Aligned_cols=178 Identities=12% Similarity=0.045 Sum_probs=99.7
Q ss_pred EEEEeeeeEeCCe-eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHh--CCCCCCeeEEEECceecccceecccccccC
Q 006275 425 VTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM--GLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501 (652)
Q Consensus 425 i~~~~v~~~y~~~-~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~--g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 501 (652)
+++++++..|+.- .++.+ .|++|++++|+||||||||||+++|+ |+.++.+|.+.+++...... ..... ..
T Consensus 7 ~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~- 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARD-LRREM-AS- 80 (251)
T ss_dssp -CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHH-HHHHH-HT-
T ss_pred cccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHH-HHHHH-HH-
Confidence 5566666655432 23333 68999999999999999999999999 76566667777665432110 00000 00
Q ss_pred CCCCCHHHHHHHhhh-hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCC-----
Q 006275 502 DLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD----- 575 (652)
Q Consensus 502 ~~~~tv~e~~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD----- 575 (652)
......+....... ............ ...........+.++......+.+-..+|++|+|||||++||
T Consensus 81 -~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~ 154 (251)
T 2ehv_A 81 -FGWDFEKYEKEGKIAIVDGVSSVVGLP-----SEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEE 154 (251)
T ss_dssp -TTCCHHHHHHTTSEEEEC------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSG
T ss_pred -cCCChHHHhhcCCEEEEEccccccccc-----cccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCH
Confidence 01111111110000 000000000000 000011112234555555555555568999999999999997
Q ss_pred HHHHHHHHHHHHh---cCceEEEEecCHHHH---------Hhhc-cEEEEEe
Q 006275 576 IPSKEMLEEAISE---YKGTVITVSHDRYFV---------KQIV-NRVVEVK 614 (652)
Q Consensus 576 ~~~~~~l~~~l~~---~~~tvi~vsHd~~~i---------~~~~-drvi~l~ 614 (652)
...++.+.++++. .+.|||+|||+++.+ ..+| |+|++|+
T Consensus 155 ~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 155 RKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp GGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 6666667776654 467999999999998 6788 9999996
No 176
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.70 E-value=3.1e-19 Score=173.90 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=98.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc--------ceecccccccCCCCCCHHHHHHHhhhhccHH
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------NYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--------~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~ 521 (652)
|++++|+||||||||||+++|+|+++ ++| |.++|.+... ++..|.. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~----~g~----------------- 57 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL----SGT----------------- 57 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET----TSC-----------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec----ccc-----------------
Confidence 78999999999999999999999999 899 8888754311 1111110 000
Q ss_pred HHHHHHhhCCCChh------hhccCcCCCCHHHHHHH-HHHH---HHccCCCeEEEeC--CCCCCCHHHHHHHHHHHHhc
Q 006275 522 DIKGLLGRCNFKAD------MLDRKVSLLSGGEKARL-AFCK---FMVKPSTLLVLDE--PTNHLDIPSKEMLEEAISEY 589 (652)
Q Consensus 522 ~~~~~L~~~~l~~~------~~~~~~~~LSgGqrqrv-~LAr---al~~~p~lLlLDE--Pt~~LD~~~~~~l~~~l~~~ 589 (652)
...+..+++... ...++...+|+|||+++ +|++ |++.+|+|||||| |++.+|....+.|.+++..+
T Consensus 58 --~~~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 58 --RGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp --EEEEEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred --eehhhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 001222222111 23445557999999988 4455 6899999999999 99999999999999999876
Q ss_pred CceEE---EEecCH--HHHHhhccEEEEEeCCEEEee
Q 006275 590 KGTVI---TVSHDR--YFVKQIVNRVVEVKGSNLQDY 621 (652)
Q Consensus 590 ~~tvi---~vsHd~--~~i~~~~drvi~l~~g~i~~~ 621 (652)
..+|| .||||. +++.+++ .+++|+|.+.
T Consensus 136 ~~~ilgti~vsh~~~~~~vd~i~----~~~~~~i~~~ 168 (189)
T 2i3b_A 136 GTIILGTIPVPKGKPLALVEEIR----NRKDVKVFNV 168 (189)
T ss_dssp SCCEEEECCCCCSSCCTTHHHHH----TTCCSEEEEC
T ss_pred CcEEEEEeecCCCCchHHHHHHe----ecCCcEEEEe
Confidence 54553 556987 5555544 4466676543
No 177
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.70 E-value=9.7e-20 Score=190.46 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=77.3
Q ss_pred EeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCC-CCCCeeEEEECceeccc-------ceecccccc
Q 006275 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-EKPRGGEVLLGEHNVLP-------NYFEQNQAE 499 (652)
Q Consensus 428 ~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~-~~p~~G~i~~~g~~~~~-------~~~~~~~~~ 499 (652)
.||+++|+++.++++++|+| +|+||||+|||||++.|+|. ..|++| |.++|.++.+ .+..+. .
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~--~ 72 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEE--R 72 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC----
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecC--C
Confidence 47899999999999999998 99999999999999999998 889999 7666654321 111121 1
Q ss_pred cCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCC-CCHHH
Q 006275 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH-LDIPS 578 (652)
Q Consensus 500 ~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~-LD~~~ 578 (652)
.....++++|++.+.......+....+...+ .+..++++.++|||||||+.+|||++ +|++||||++ ||+..
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l---~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~ 145 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYI---DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLD 145 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHHH---HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHH
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHHH---HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHH
Confidence 1222334444433221100000001111110 12345778889999999999999986 9999999985 99988
Q ss_pred HHHHHHHHHhcCceEEEEecCHH
Q 006275 579 KEMLEEAISEYKGTVITVSHDRY 601 (652)
Q Consensus 579 ~~~l~~~l~~~~~tvi~vsHd~~ 601 (652)
.+.+.++-.+.+.++|+++||+.
T Consensus 146 ~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 146 VAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHHhcCCEEEEEEeCCCC
Confidence 64443332223568999999974
No 178
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.70 E-value=5.1e-18 Score=197.05 Aligned_cols=145 Identities=19% Similarity=0.172 Sum_probs=104.6
Q ss_pred EEEEEeeeeEe---CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-CCeeEEEECceecccceecccccc
Q 006275 424 VVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLGEHNVLPNYFEQNQAE 499 (652)
Q Consensus 424 ~i~~~~v~~~y---~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~ 499 (652)
.|++++...-. +++.+++|+||+ |++++|+||||||||||||+|+|+.. ++.|.+.-.. ....+++.+
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~-~~~i~~v~~---- 621 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAE-EAHLPLFDG---- 621 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSS-EEEECCCSE----
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehh-ccceeeHHH----
Confidence 47888875433 346789999999 99999999999999999999999874 5666542110 000111111
Q ss_pred cCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH--ccCCCeEEEeCC---CCCC
Q 006275 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM--VKPSTLLVLDEP---TNHL 574 (652)
Q Consensus 500 ~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral--~~~p~lLlLDEP---t~~L 574 (652)
++...++.+++ ...+|+|+++++.+|+++ +.+|+++||||| |++|
T Consensus 622 -i~~~~~~~d~l-----------------------------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~l 671 (765)
T 1ewq_A 622 -IYTRIGASDDL-----------------------------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSL 671 (765)
T ss_dssp -EEEECCC-----------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHH
T ss_pred -hhccCCHHHHH-----------------------------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCc
Confidence 11112222221 123799999999999999 999999999999 9999
Q ss_pred CHHHH-HHHHHHHHhcCceEEEEecCHHHHHhhc
Q 006275 575 DIPSK-EMLEEAISEYKGTVITVSHDRYFVKQIV 607 (652)
Q Consensus 575 D~~~~-~~l~~~l~~~~~tvi~vsHd~~~i~~~~ 607 (652)
|..+. ..+.+.|.+.+.|+|++||+.++.. ++
T Consensus 672 D~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 672 DGVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 99886 5688888776779999999998764 44
No 179
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.70 E-value=5.7e-18 Score=199.42 Aligned_cols=152 Identities=18% Similarity=0.243 Sum_probs=100.7
Q ss_pred EEEEEeeeeEe-------CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEECceecccceecc
Q 006275 424 VVTIKNLEFGY-------EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVLLGEHNVLPNYFEQ 495 (652)
Q Consensus 424 ~i~~~~v~~~y-------~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-~~G~i~~~g~~~~~~~~~~ 495 (652)
.|.+++...-. +++.+++++||++++|++++|+||||||||||||+++++.-. ..|. +++.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~-----------~vpa 708 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS-----------YVPA 708 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC-----------CBSS
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc-----------cccc
Confidence 57777765432 246799999999999999999999999999999999754211 0010 0110
Q ss_pred cccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q 006275 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (652)
Q Consensus 496 ~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD 575 (652)
.... ... +..++.++|.. +...+..+++|+||+|++.++++ +.+|+++||||||+|||
T Consensus 709 ~~~~-i~~-------------------~d~i~~~ig~~-d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 709 EEAT-IGI-------------------VDGIFTRMGAA-DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp SEEE-EEC-------------------CSEEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred hhhh-hhH-------------------HHHHHHhCChH-HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 0000 000 00112233332 33455667899999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHh----cCceEEEEecCHHHHHhhccE
Q 006275 576 IPSKEMLE-EAISE----YKGTVITVSHDRYFVKQIVNR 609 (652)
Q Consensus 576 ~~~~~~l~-~~l~~----~~~tvi~vsHd~~~i~~~~dr 609 (652)
+.....+. .+++. .+.|||++|||.+.+ .++|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhh
Confidence 99887765 44443 356999999998776 34554
No 180
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.69 E-value=4.5e-17 Score=162.12 Aligned_cols=143 Identities=17% Similarity=0.239 Sum_probs=83.0
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-------CeeEEEECceecccceecccccccCCCCCCHHHHHHHhhh--
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-------RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE-- 516 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~-- 516 (652)
.|++|++++|+||||||||||+++|+|...| ..|.+++++.+... .+.+.....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-----------------~~~i~~~~~~~ 83 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----------------PERIREIAQNR 83 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-----------------HHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-----------------HHHHHHHHHHc
Confidence 5899999999999999999999999996555 33355555432100 000000000
Q ss_pred hccHHHHHHHHhhCCCChhhhccCcCCCCHHHH-HHHHHHHHHcc-------CCCeEEEeCCCCCCCHH-------HH--
Q 006275 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK-ARLAFCKFMVK-------PSTLLVLDEPTNHLDIP-------SK-- 579 (652)
Q Consensus 517 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqr-qrv~LAral~~-------~p~lLlLDEPt~~LD~~-------~~-- 579 (652)
....+ ..++.+.+ ...++.+++ +.+..+++++. +|++|+|||||+++|+. ..
T Consensus 84 ~~~~~---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~ 152 (231)
T 4a74_A 84 GLDPD---EVLKHIYV--------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQ 152 (231)
T ss_dssp TSCHH---HHHHTEEE--------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHH
T ss_pred CCCHH---HHhhcEEE--------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHH
Confidence 00000 11111111 112344443 33555555554 99999999999999983 11
Q ss_pred ---HHHHHHH----HhcCceEEEEec----CHHHHHhhccEEEEEeCC
Q 006275 580 ---EMLEEAI----SEYKGTVITVSH----DRYFVKQIVNRVVEVKGS 616 (652)
Q Consensus 580 ---~~l~~~l----~~~~~tvi~vsH----d~~~i~~~~drvi~l~~g 616 (652)
..+.+.| ++.+.|||+||| +-..+..+||++++|++|
T Consensus 153 ~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 153 QKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 1333333 345679999999 555599999999999864
No 181
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.69 E-value=6.1e-20 Score=181.25 Aligned_cols=143 Identities=15% Similarity=0.071 Sum_probs=103.7
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccC--CCCCHHHHHHHhhHHHHHHHHHHH
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS--MSRTVREEFMSAFKEEMEIAGKLE 197 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~--~~~Tv~e~i~~~~~~~~~~~~~~~ 197 (652)
.++|+++||+||||||||||+++|+|++.| .++|++|++... ...|+.++....+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~-------- 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------RVALLPMDHYYKDLGHLPLEERLRVNYDHP-------- 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSG--------
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------CeEEEecCccccCcccccHHHhcCCCCCCh--------
Confidence 578999999999999999999999998765 488999997654 3457777643211100
Q ss_pred HHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHH----HHHHHHHHH
Q 006275 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW----QMRMSLGKI 273 (652)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGq----kqRv~LAra 273 (652)
......++.+.++.+++. +..++++.++|+|| +||+++|++
T Consensus 63 ----------------------------------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~s~g~~~~~~~~~~~~~~ 107 (211)
T 3asz_A 63 ----------------------------------DAFDLALYLEHAQALLRG-LPVEMPVYDFRAYTRSPRRTPVRPAPV 107 (211)
T ss_dssp ----------------------------------GGBCHHHHHHHHHHHHTT-CCEEECCEETTTTEECSSCEEECCCSE
T ss_pred ----------------------------------hhhhHHHHHHHHHHHHcC-CCcCCCcccCcccCCCCCeEEeCCCcE
Confidence 000012233344444554 34566789999996 478899999
Q ss_pred HccCCCeEEEeCCCCC-------CCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 006275 274 LLQDPDLLLLDEPTNH-------LDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (652)
Q Consensus 274 L~~~p~iLLLDEPts~-------LD~~~~~~l~~~L~----~~g~tvIivsHd~~ 317 (652)
++.+|+++++||||++ ||+.....+.+.++ +.|.|++.++|+..
T Consensus 108 li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 108 VILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999 89988777776653 35889999999853
No 182
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.66 E-value=7.8e-18 Score=175.98 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=97.0
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------------ceEEEEeccCccCCCCCHHHHHHHh
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFEVSMSRTVREEFMSA 185 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------------~~i~~v~Q~~~~~~~~Tv~e~i~~~ 185 (652)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.+ ..++|++|++...+..++++|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999987643 2488999998776666777776421
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHH
Q 006275 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265 (652)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqk 265 (652)
.. .. .+ ..+++..|..+ ..+ ..++..++
T Consensus 181 ~~----------------~~------------------------~d--------~~llDt~G~~~-~~~---~~~~eLs~ 208 (304)
T 1rj9_A 181 KA----------------RG------------------------YD--------LLFVDTAGRLH-TKH---NLMEELKK 208 (304)
T ss_dssp HH----------------HT------------------------CS--------EEEECCCCCCT-TCH---HHHHHHHH
T ss_pred Hh----------------CC------------------------CC--------EEEecCCCCCC-chH---HHHHHHHH
Confidence 00 00 00 01233334321 112 22344558
Q ss_pred HHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHH
Q 006275 266 MRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (652)
Q Consensus 266 qRv~LAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~ 317 (652)
||++||||++.+|+ +|.|| |+++.+.. ..+..+-+..+.|+|++||+.+
T Consensus 209 ~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 209 VKRAIAKADPEEPKEVWLVLD-AVTGQNGL--EQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHCTTCCSEEEEEEE-TTBCTHHH--HHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHhhcCCCCeEEEEEc-HHHHHHHH--HHHHHHHHHcCCcEEEEECCcc
Confidence 99999999999999 66666 66665432 2333333345899999999843
No 183
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.66 E-value=1.2e-16 Score=158.92 Aligned_cols=166 Identities=11% Similarity=0.102 Sum_probs=104.9
Q ss_pred eeeeeceEE-EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccc-cccCCCCCCHHHHHHHh
Q 006275 437 RLLFNRANL-TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQ-AEALDLDKTVLETVAEA 514 (652)
Q Consensus 437 ~~vl~~isl-~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~-~~~~~~~~tv~e~~~~~ 514 (652)
.+.|+++.. .+++|++++|+||||||||||++.|++...+.+|.+.+.+.+.....+.... ...........+++..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 87 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLII- 87 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEE-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEE-
Confidence 345777776 7999999999999999999999999998877777776644322110000000 0000000000000000
Q ss_pred hhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC--eEEEeCCCCCC--CHHHHHHHHHHHHh--
Q 006275 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHL--DIPSKEMLEEAISE-- 588 (652)
Q Consensus 515 ~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~--lLlLDEPt~~L--D~~~~~~l~~~l~~-- 588 (652)
.... ...++ .. ......|.++.++...+.+...+|+ +||+||||+.+ |+.....+.+.|.+
T Consensus 88 ~~~~--------~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~ 154 (235)
T 2w0m_A 88 IDAL--------MKEKE--DQ---WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVL 154 (235)
T ss_dssp EECC--------C------CT---TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHH
T ss_pred Eecc--------ccccC--ce---eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHH
Confidence 0000 00000 00 0112359999999888888888999 99999999888 99887777776654
Q ss_pred --cCceEEEEecCH--------HHHHhhccEEEEEeCC
Q 006275 589 --YKGTVITVSHDR--------YFVKQIVNRVVEVKGS 616 (652)
Q Consensus 589 --~~~tvi~vsHd~--------~~i~~~~drvi~l~~g 616 (652)
.+.|||++||+. ..+..+||+|++|+..
T Consensus 155 ~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 155 NKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 456999999999 5588999999999753
No 184
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.65 E-value=1.2e-16 Score=158.89 Aligned_cols=168 Identities=13% Similarity=0.132 Sum_probs=104.6
Q ss_pred eeeeeeeeE-EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCCHHHHHHHhhHH
Q 006275 110 VTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE 188 (652)
Q Consensus 110 ~~vL~~vsl-~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~ 188 (652)
.+.|+++.. .+++|++++|+||||||||||++.|++...+..|.|.+ +..+. +. +.+...+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~---------~~~~~------~~-~~~~~~~-- 70 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY---------VTTEE------SR-DSIIRQA-- 70 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE---------EESSS------CH-HHHHHHH--
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE---------EEccc------CH-HHHHHHH--
Confidence 456788887 89999999999999999999999999887776665543 33221 11 1111000
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHH
Q 006275 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268 (652)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv 268 (652)
. .+. .+... +.. .....++ .....++ . .. .....|.++.++.
T Consensus 71 --------~----~~~---~~~~~---~~~------~~~~~~~---------~~~~~~~-~-~~---~~~~~~~~~~~~~ 112 (235)
T 2w0m_A 71 --------K----QFN---WDFEE---YIE------KKLIIID---------ALMKEKE-D-QW---SLVNLTPEELVNK 112 (235)
T ss_dssp --------H----HTT---CCCGG---GBT------TTEEEEE---------CCC-----C-TT---BCSSCCHHHHHHH
T ss_pred --------H----Hhc---chHHH---Hhh------CCEEEEe---------ccccccC-c-ee---eecCCCHHHHHHH
Confidence 0 000 00000 000 0000000 0000000 0 00 1134599999998
Q ss_pred HHHHHHccCCC--eEEEeCCCCCC--CHHHHHHHHHHH----ccCCCeEEEEecCH--------HHHHhhcCeEEEEcCC
Q 006275 269 SLGKILLQDPD--LLLLDEPTNHL--DLDTIEWLEGYL----GKQDVPMVIISHDR--------AFLDQLCTKIVETEMG 332 (652)
Q Consensus 269 ~LAraL~~~p~--iLLLDEPts~L--D~~~~~~l~~~L----~~~g~tvIivsHd~--------~~l~~~~d~ii~l~~G 332 (652)
..+.+...+|+ +|++||||+++ |+.....+.+.| ++.|+|||+++|+. ..+.++||+|++|+..
T Consensus 113 ~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 113 VIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88888888999 99999999888 987766665554 45689999999999 5588999999999865
Q ss_pred e
Q 006275 333 V 333 (652)
Q Consensus 333 ~ 333 (652)
.
T Consensus 193 ~ 193 (235)
T 2w0m_A 193 I 193 (235)
T ss_dssp E
T ss_pred e
Confidence 3
No 185
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.64 E-value=4.8e-17 Score=159.58 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=97.7
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCC-----CCCeeEEEECc-------eec--c
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE-----KPRGGEVLLGE-------HNV--L 489 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~-----~p~~G~i~~~g-------~~~--~ 489 (652)
+|+++|+++.|+ ..++++ |++.+|.+++|+|+||||||||++.|+|.. .|+.|++...+ ..+ .
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 489999999997 577888 899999999999999999999999999998 78888765321 111 1
Q ss_pred cceecccccccCCCCC-C-HHHHHHHhh----------------h--hccHHHHHHHHhhCCCChhhhccCcCCCCHHHH
Q 006275 490 PNYFEQNQAEALDLDK-T-VLETVAEAA----------------E--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~-t-v~e~~~~~~----------------~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqr 549 (652)
+++.... ..... . ....+.... . .....++..++...++..-....++..+|+||+
T Consensus 80 ~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~ 155 (210)
T 1pui_A 80 PGYGYAE----VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGAR 155 (210)
T ss_dssp CCCC----------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHH
T ss_pred cCCcccc----cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhH
Confidence 1110000 00000 0 000111000 0 001224556666777653334677889999999
Q ss_pred HH-HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q 006275 550 AR-LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY 589 (652)
Q Consensus 550 qr-v~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 589 (652)
|| +..+++++.+|+++++|||||++|..+...+.+.|.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 156 KAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 99 89999999999999999999999999999999988754
No 186
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.63 E-value=1.2e-18 Score=171.82 Aligned_cols=142 Identities=10% Similarity=0.004 Sum_probs=103.1
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhh---hhccHHHH
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAA---EDWRIDDI 523 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~---~~~~~~~~ 523 (652)
.++|+++||+||||||||||+++|+|++.|. + .++.++.........++.++..... .......+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~---i---------~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGER---V---------ALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALY 70 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGG---E---------EEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCC---e---------EEEecCccccCcccccHHHhcCCCCCChhhhhHHHH
Confidence 5789999999999999999999999998761 1 2222221111113456777654422 12233456
Q ss_pred HHHHhhCCCChhhhccCcCCCCHHHH----HHHHHHHHHccCCCeEEEeCCCCC-------CCHHHHHHHHHHHHhc---
Q 006275 524 KGLLGRCNFKADMLDRKVSLLSGGEK----ARLAFCKFMVKPSTLLVLDEPTNH-------LDIPSKEMLEEAISEY--- 589 (652)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSgGqr----qrv~LAral~~~p~lLlLDEPt~~-------LD~~~~~~l~~~l~~~--- 589 (652)
.+.++.+++. +..+.++.++|+||+ ||+++|++++.+|.++++||||++ ||+.....+.+.+.+.
T Consensus 71 ~~~l~~~~~~-~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~ 149 (211)
T 3asz_A 71 LEHAQALLRG-LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLE 149 (211)
T ss_dssp HHHHHHHHTT-CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 6677777664 445678889999974 788999999999999999999999 9999988888887653
Q ss_pred -CceEEEEecCHH
Q 006275 590 -KGTVITVSHDRY 601 (652)
Q Consensus 590 -~~tvi~vsHd~~ 601 (652)
+.|++.++|+..
T Consensus 150 ~g~t~~~~~~~~~ 162 (211)
T 3asz_A 150 RGRSLEGVVAQYL 162 (211)
T ss_dssp SCCCHHHHHHHHH
T ss_pred hCCCHHHHHHHHH
Confidence 569999999853
No 187
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.62 E-value=5e-17 Score=189.73 Aligned_cols=158 Identities=13% Similarity=0.050 Sum_probs=100.4
Q ss_pred ceEEEeEEEEe-----CCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-CCCcEEEECCCCceEEEEeccC
Q 006275 97 GVKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQEF 170 (652)
Q Consensus 97 ~i~v~~ls~~y-----~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-p~~G~i~~~~~~~~i~~v~Q~~ 170 (652)
.|.+++..--. ++..+++|++|+ ++|++++|+||||||||||||+|+|+.. ...|.. +......++++.|
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~~~~i~~~~~-- 652 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQKVEIGPIDR-- 652 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCCE--
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchhcccceeHHH--
Confidence 46666653111 345689999999 9999999999999999999999999743 233421 1111234555555
Q ss_pred ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCc
Q 006275 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (652)
Q Consensus 171 ~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (652)
++...++.+++.
T Consensus 653 -i~~~~~~~d~l~------------------------------------------------------------------- 664 (800)
T 1wb9_A 653 -IFTRVGAADDLA------------------------------------------------------------------- 664 (800)
T ss_dssp -EEEEEC-------------------------------------------------------------------------
T ss_pred -HHhhCCHHHHHH-------------------------------------------------------------------
Confidence 223334444431
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHH----HHHHHcc-CCCeEEEEecCHHHHHhhcCe
Q 006275 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW----LEGYLGK-QDVPMVIISHDRAFLDQLCTK 325 (652)
Q Consensus 251 ~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~----l~~~L~~-~g~tvIivsHd~~~l~~~~d~ 325 (652)
....++|+|+++ ++.+...+.+|+++|||||++|+|+..... +.+.|.+ .|+++|++||+.+.. .+||+
T Consensus 665 ----~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~ 738 (800)
T 1wb9_A 665 ----SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEK 738 (800)
T ss_dssp ---------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHH
T ss_pred ----hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhh
Confidence 112456777764 444455689999999999988888754433 3344544 589999999999876 58886
Q ss_pred EEEEcCC
Q 006275 326 IVETEMG 332 (652)
Q Consensus 326 ii~l~~G 332 (652)
+..+.++
T Consensus 739 ~~~v~n~ 745 (800)
T 1wb9_A 739 MEGVANV 745 (800)
T ss_dssp STTEEEE
T ss_pred hhceEEE
Confidence 5444433
No 188
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.62 E-value=8.6e-19 Score=199.99 Aligned_cols=152 Identities=20% Similarity=0.323 Sum_probs=90.8
Q ss_pred ceEEEeEEEEeCC--eeeeeee----------eEEEECCCEEEEECCCCccHHHHHHHHHcCCCC-CCcEEEECCCC---
Q 006275 97 GVKLENISKSYKG--VTVLKDV----------TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSN--- 160 (652)
Q Consensus 97 ~i~v~~ls~~y~~--~~vL~~v----------sl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-~~G~i~~~~~~--- 160 (652)
.+.++|+++.|+. +++++.+ +++++. +|||||||||||||+++|+|+..| ++|.|.++|..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 4789999999975 3355444 366665 999999999999999999999988 79998876532
Q ss_pred ----------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhC
Q 006275 161 ----------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (652)
Q Consensus 161 ----------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (652)
..|+|++|++.+++..||++|+..+... ..
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~--------------~~-------------------------- 126 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA--------------IA-------------------------- 126 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH--------------HH--------------------------
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH--------------hc--------------------------
Confidence 3589999998887777888887421100 00
Q ss_pred ChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCC------CCCCCHHHHHHHHHHHcc
Q 006275 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP------TNHLDLDTIEWLEGYLGK 304 (652)
Q Consensus 231 ~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEP------ts~LD~~~~~~l~~~L~~ 304 (652)
....++. ++++.++.+....|+++|+||| |+|||+..+..+.+++++
T Consensus 127 ------------~~~~~~s---------------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~ 179 (608)
T 3szr_A 127 ------------GEGMGIS---------------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK 179 (608)
T ss_dssp ------------CSSSCCC---------------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred ------------CCccccc---------------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence 0000111 1222233334468999999999 999999998877766532
Q ss_pred -----CCCeEEEEecCHHH
Q 006275 305 -----QDVPMVIISHDRAF 318 (652)
Q Consensus 305 -----~g~tvIivsHd~~~ 318 (652)
.+.++++++|+.+.
T Consensus 180 ~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 180 YIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp HTTSSSCCEEEEEESSSCT
T ss_pred HHhcCCCCceEEEeccchh
Confidence 36788999999763
No 189
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.61 E-value=3.6e-15 Score=142.86 Aligned_cols=92 Identities=16% Similarity=0.287 Sum_probs=76.3
Q ss_pred ccCCCCCCChHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeE
Q 006275 253 GDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~----~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i 326 (652)
..+++..||||||||++||++|+ .+|+++||||||+|||+.++..+.++|++ .+.++|+|||+...+ ..||++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEE
Confidence 34567899999999999999997 45799999999999999999999988853 357899999998765 789999
Q ss_pred EEE--cCCeEEEecCChHHHH
Q 006275 327 VET--EMGVSRTYEGNYSQYV 345 (652)
Q Consensus 327 i~l--~~G~~~~~~g~~~~~~ 345 (652)
+.+ .+|.......++.++.
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEEEETTEEEEEECCHHHHH
T ss_pred EEEEecCCEEEEEEEEcHHHH
Confidence 855 5787776766665543
No 190
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=1.2e-17 Score=164.00 Aligned_cols=180 Identities=11% Similarity=0.083 Sum_probs=96.0
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCC-----CCCCcEEEECCCC---ceEEEEec
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKSN---MKIAFLSQ 168 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~-----~p~~G~i~~~~~~---~~i~~v~Q 168 (652)
+|+++|++|.|+ .+++++ |.+++|..++|+|+||||||||++.|+|.. .|+.|.+...+.- ..+-+ -.
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l-~D 78 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL-VD 78 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE-EE
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE-EE
Confidence 489999999997 467877 889999999999999999999999999998 7888876532100 01111 11
Q ss_pred cCccCC-CC--CHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhh
Q 006275 169 EFEVSM-SR--TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (652)
Q Consensus 169 ~~~~~~-~~--Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (652)
.|.... .. ..++.+. . ....+........ ..-++... .......+..+.+++..
T Consensus 79 t~G~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~-~~~~v~d~------------~~~~~~~~~~~~~~~~~ 135 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQ----R------ALGEYLEKRQSLQ-GLVVLMDI------------RHPLKDLDQQMIEWAVD 135 (210)
T ss_dssp CCCCC------CCHHHHH----H------HHHHHHHHCTTEE-EEEEEEET------------TSCCCHHHHHHHHHHHH
T ss_pred CcCCcccccCHHHHHHHH----H------HHHHHHHhhhccc-EEEEEEEC------------CCCCchhHHHHHHHHHH
Confidence 221100 00 0001100 0 0011110000000 00000000 00001112234455566
Q ss_pred cCCCcccccCCCCCCChHHHHH-HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q 006275 246 LGFTADDGDRLVASFSSGWQMR-MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (652)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqR-v~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (652)
.+++.-....++..+|+||+|| +..+++++.+|+++++|||||++|......+.+.|.
T Consensus 136 ~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~ 194 (210)
T 1pui_A 136 SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 194 (210)
T ss_dssp TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence 6765333345578899999999 899999999999999999999999999998887764
No 191
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.61 E-value=1.4e-16 Score=169.96 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=86.7
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHH
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~ 524 (652)
.+.+|++++|+||||||||||+++|+|+++|+ +|.|...+.++. +...... .. ....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e--~~~~~~~-~~-------------v~q~------ 176 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE--FVHESKK-CL-------------VNQR------ 176 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC--SCCCCSS-SE-------------EEEE------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH--hhhhccc-cc-------------eeee------
Confidence 67899999999999999999999999999987 566654332221 1100000 00 0000
Q ss_pred HHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHH
Q 006275 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVK 604 (652)
Q Consensus 525 ~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~ 604 (652)
......++..+ +||+||..+|++|+||||| |.++...+.++.. .+.+||+++|+.+.+
T Consensus 177 -------------~~~~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~~-~G~~vl~t~H~~~~~- 234 (356)
T 3jvv_A 177 -------------EVHRDTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTAAE-TGHLVFGTLHTTSAA- 234 (356)
T ss_dssp -------------EBTTTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHH-TTCEEEEEESCSSHH-
T ss_pred -------------eeccccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHHh-cCCEEEEEEccChHH-
Confidence 00000122222 9999999999999999999 7887776666543 367999999999988
Q ss_pred hhccEEEEEeC
Q 006275 605 QIVNRVVEVKG 615 (652)
Q Consensus 605 ~~~drvi~l~~ 615 (652)
..+||++.|..
T Consensus 235 ~~~dRli~l~~ 245 (356)
T 3jvv_A 235 KTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHhhhcC
Confidence 67898887743
No 192
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.60 E-value=1.2e-16 Score=170.52 Aligned_cols=138 Identities=16% Similarity=0.164 Sum_probs=97.5
Q ss_pred EeEEEEeC--CeeeeeeeeE-------EEECCCEEEEECCCCccHHHHHHHHHcCCCCC-CcEEEECCCCce------EE
Q 006275 101 ENISKSYK--GVTVLKDVTW-------EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMK------IA 164 (652)
Q Consensus 101 ~~ls~~y~--~~~vL~~vsl-------~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~-~G~i~~~~~~~~------i~ 164 (652)
..++++|- ..+.|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ .|.|........ .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~ 171 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC 171 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc
Confidence 45666662 2345666665 67888999999999999999999999999987 566543211110 01
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh
Q 006275 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (652)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (652)
+++|..
T Consensus 172 ~v~q~~-------------------------------------------------------------------------- 177 (356)
T 3jvv_A 172 LVNQRE-------------------------------------------------------------------------- 177 (356)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred ceeeee--------------------------------------------------------------------------
Confidence 111110
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcC
Q 006275 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (652)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d 324 (652)
.+ ...++-.+ +||+||..+|++||+|||| |.++.+.+.+.. ..|.|||+++|+.+.+ ..||
T Consensus 178 -~~---------~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~d 238 (356)
T 3jvv_A 178 -VH---------RDTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTID 238 (356)
T ss_dssp -BT---------TTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHH
T ss_pred -ec---------cccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHH
Confidence 00 01122222 9999999999999999999 888877766654 4589999999999988 7899
Q ss_pred eEEEEcC
Q 006275 325 KIVETEM 331 (652)
Q Consensus 325 ~ii~l~~ 331 (652)
|++.|..
T Consensus 239 Rli~l~~ 245 (356)
T 3jvv_A 239 RVVDVFP 245 (356)
T ss_dssp HHHHTSC
T ss_pred HHhhhcC
Confidence 9987754
No 193
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=2.3e-17 Score=179.28 Aligned_cols=160 Identities=14% Similarity=0.134 Sum_probs=97.4
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCc--EEEECCC----CceEEEEecc
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--NVIKAKS----NMKIAFLSQE 169 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G--~i~~~~~----~~~i~~v~Q~ 169 (652)
+.|.++|++++|+++.++++++|+| +|||+||||||||+++|+|...+..| .+.+... ...++|++|.
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~ 83 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 83 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC---
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec
Confidence 3589999999999888999999998 99999999999999999999875444 1111111 1247888888
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCC
Q 006275 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (652)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (652)
+.+...+||+|++.... .... . ..+ ..+.+.+.
T Consensus 84 ~~~~~~Ltv~Dt~g~~~--~~~~----~---~~~---------------------------------~~i~~~i~----- 116 (418)
T 2qag_C 84 GGVQLLLTIVDTPGFGD--AVDN----S---NCW---------------------------------QPVIDYID----- 116 (418)
T ss_dssp ---CEEEEEEECC--------------------C---------------------------------HHHHHHHH-----
T ss_pred CCcccceeeeechhhhh--hccc----h---hhH---------------------------------HHHHHHHH-----
Confidence 77666778887753110 0000 0 000 00000000
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHccCCC---eEEEeCCC-CCCCHHHHHHHHHHHccCCCeEEEEecCHHH
Q 006275 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPD---LLLLDEPT-NHLDLDTIEWLEGYLGKQDVPMVIISHDRAF 318 (652)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRv~LAraL~~~p~---iLLLDEPt-s~LD~~~~~~l~~~L~~~g~tvIivsHd~~~ 318 (652)
..++.+++||++||||++.+|+ +|++|||| .+||+....++.. |.. +.+||+|.|..+.
T Consensus 117 --------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~-L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 117 --------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR-LHE-KVNIIPLIAKADT 179 (418)
T ss_dssp --------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHH-HTT-TSEEEEEEESTTS
T ss_pred --------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHH-Hhc-cCcEEEEEEcccC
Confidence 1234566789999999999999 99999999 6999988766654 443 7889998886543
No 194
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.59 E-value=1.6e-15 Score=156.44 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=91.5
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC----CceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHH
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~----~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~ 195 (652)
+++|++++|+||||||||||++.|++.+. .|.+.. |. ...+.|+..+.. . +.+.. +
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~~~~v~~~~~e~~------~-~~~~~----------r 86 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELPTGPVIYLPAEDP------P-TAIHH----------R 86 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCCCCCEEEEESSSC------H-HHHHH----------H
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCCCccEEEEECCCC------H-HHHHH----------H
Confidence 78999999999999999999999998654 354422 21 235677655421 1 11100 0
Q ss_pred HHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 006275 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (652)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~ 275 (652)
+.. +.. .++ .....++++.+++. +..++++..||+||+|++ ++++
T Consensus 87 ~~~----~g~-----------------------~~~----~~~~~~~~~~l~l~-~~~~~~~~~ls~g~~~~i---~~l~ 131 (279)
T 1nlf_A 87 LHA----LGA-----------------------HLS----AEERQAVADGLLIQ-PLIGSLPNIMAPEWFDGL---KRAA 131 (279)
T ss_dssp HHH----HHT-----------------------TSC----HHHHHHHHHHEEEC-CCTTSCCCTTSHHHHHHH---HHHH
T ss_pred HHH----HHh-----------------------hcC----hhhhhhccCceEEe-ecCCCCcccCCHHHHHHH---HHhc
Confidence 000 000 000 01123345555654 345677899999998765 6888
Q ss_pred cCCCeEEEeCCCC--CCCHHHH---HHHHHH----HccCCCeEEEEecCHHHHH
Q 006275 276 QDPDLLLLDEPTN--HLDLDTI---EWLEGY----LGKQDVPMVIISHDRAFLD 320 (652)
Q Consensus 276 ~~p~iLLLDEPts--~LD~~~~---~~l~~~----L~~~g~tvIivsHd~~~l~ 320 (652)
.+|+++|+||||+ ++|.... ..+.+. .++.|+|||+++|+.....
T Consensus 132 ~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 132 EGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp TTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred CCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 8999999999999 9997432 444333 3456999999999987653
No 195
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.58 E-value=4e-15 Score=142.53 Aligned_cols=92 Identities=20% Similarity=0.308 Sum_probs=75.8
Q ss_pred hccCcCCCCHHHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEE
Q 006275 537 LDRKVSLLSGGEKARLAFCKFMV----KPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRV 610 (652)
Q Consensus 537 ~~~~~~~LSgGqrqrv~LAral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~drv 610 (652)
..+++..||||||||++||++++ .+|+++||||||++||+.+...+.+.|+++. .++|+|||+.... .+||++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEE
Confidence 35667889999999999999997 4579999999999999999999999998763 5899999998665 679999
Q ss_pred EEE--eCCEEEeecCChhhHh
Q 006275 611 VEV--KGSNLQDYAGDYNVCF 629 (652)
Q Consensus 611 i~l--~~g~i~~~~g~~~~~~ 629 (652)
+.+ .+|....+..+.+++.
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEEEETTEEEEEECCHHHHH
T ss_pred EEEEecCCEEEEEEEEcHHHH
Confidence 866 4776554555555543
No 196
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.58 E-value=2e-16 Score=165.33 Aligned_cols=141 Identities=16% Similarity=0.099 Sum_probs=92.2
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc----------------ceecccccccCCCCCCHHHHHH
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------------NYFEQNQAEALDLDKTVLETVA 512 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------------~~~~~~~~~~~~~~~tv~e~~~ 512 (652)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.. .++.|. ...++..++.+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~--~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGP--EGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCC--TTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeC--CCCCHHHHHHHHHH
Confidence 689999999999999999999999999999999998877521 122222 23344456777776
Q ss_pred HhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHHhcC
Q 006275 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHLDIPSKEMLEEAISEYK 590 (652)
Q Consensus 513 ~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~~ 590 (652)
.+...... ..+++..|.. +..... ++..++||++||||++.+|+ +|.|| |+++.+.. ..+.+.-+..+
T Consensus 179 ~~~~~~~d---~~llDt~G~~-~~~~~~---~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--~~~~~~~~~~~ 248 (304)
T 1rj9_A 179 AMKARGYD---LLFVDTAGRL-HTKHNL---MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL--EQAKKFHEAVG 248 (304)
T ss_dssp HHHHHTCS---EEEECCCCCC-TTCHHH---HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH--HHHHHHHHHHC
T ss_pred HHHhCCCC---EEEecCCCCC-CchHHH---HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH--HHHHHHHHHcC
Confidence 53211000 0123333332 112223 45556999999999999999 66677 55554422 23333333457
Q ss_pred ceEEEEecCHH
Q 006275 591 GTVITVSHDRY 601 (652)
Q Consensus 591 ~tvi~vsHd~~ 601 (652)
.|+|++||+..
T Consensus 249 ~t~iivTh~d~ 259 (304)
T 1rj9_A 249 LTGVIVTKLDG 259 (304)
T ss_dssp CSEEEEECTTS
T ss_pred CcEEEEECCcc
Confidence 79999999854
No 197
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.57 E-value=3.1e-16 Score=167.16 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=88.9
Q ss_pred eeeeee-eEEEECCCEEEEECCCCccHHHHHHHHHcCC--CCCC----cE-EEECCCCceEEEEeccCccCCCCCHHHHH
Q 006275 111 TVLKDV-TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDS----GN-VIKAKSNMKIAFLSQEFEVSMSRTVREEF 182 (652)
Q Consensus 111 ~vL~~v-sl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~--~p~~----G~-i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i 182 (652)
+.|+.+ ++.|++|++++|+||||||||||++.|+|.. +|++ |. |++++... . . .+.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~----------~----~-~~~i 182 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT----------F----R-PERI 182 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC----------C----C-HHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC----------C----C-HHHH
Confidence 345554 6899999999999999999999999999998 6776 45 45443221 0 0 1111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCCh
Q 006275 183 MSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262 (652)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSG 262 (652)
...+ .... +.. . .+++.+-+ .. ..-|.
T Consensus 183 ~~i~-----------------q~~~----------------------~~~---~----~v~~ni~~----~~---~~~~~ 209 (349)
T 1pzn_A 183 REIA-----------------QNRG----------------------LDP---D----EVLKHIYV----AR---AFNSN 209 (349)
T ss_dssp HHHH-----------------HTTT----------------------CCH---H----HHGGGEEE----EE---CCSHH
T ss_pred HHHH-----------------HHcC----------------------CCH---H----HHhhCEEE----Ee---cCChH
Confidence 1000 0000 000 0 11111111 00 01257
Q ss_pred HHHHHHHHHHHHc-------cCCCeEEEeCCCCCCCHHH------------HHHHHHH----HccCCCeEEEEecCHHHH
Q 006275 263 GWQMRMSLGKILL-------QDPDLLLLDEPTNHLDLDT------------IEWLEGY----LGKQDVPMVIISHDRAFL 319 (652)
Q Consensus 263 GqkqRv~LAraL~-------~~p~iLLLDEPts~LD~~~------------~~~l~~~----L~~~g~tvIivsHd~~~l 319 (652)
+|+|++.++++++ .+|++||+||||++||+.. ...+... .++.++|||+++|.....
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~ 289 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARP 289 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccc
Confidence 8889999999888 6899999999999999862 2233332 345799999999998765
Q ss_pred HhhcCeEEEEcCCeE
Q 006275 320 DQLCTKIVETEMGVS 334 (652)
Q Consensus 320 ~~~~d~ii~l~~G~~ 334 (652)
..+++.......|.+
T Consensus 290 ~~~~~~~~~~~~G~~ 304 (349)
T 1pzn_A 290 DAFFGDPTRPIGGHI 304 (349)
T ss_dssp ------------CCC
T ss_pred ccccCCccccCCcce
Confidence 443333444444443
No 198
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.56 E-value=4.8e-15 Score=152.92 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=91.7
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecc----cceecccccccCCCCCCHH---HHHHHhhhhcc
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----PNYFEQNQAEALDLDKTVL---ETVAEAAEDWR 519 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----~~~~~~~~~~~~~~~~tv~---e~~~~~~~~~~ 519 (652)
+++|++++|+||||||||||++.+++.+. .|.+.+ |.+.. ..|+.. ..+.. ..+........
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~~~~v~~~~~--------e~~~~~~~~r~~~~g~~~~ 95 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELPTGPVIYLPA--------EDPPTAIHHRLHALGAHLS 95 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCCCCCEEEEES--------SSCHHHHHHHHHHHHTTSC
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCCCccEEEEEC--------CCCHHHHHHHHHHHHhhcC
Confidence 78999999999999999999999998654 354422 22211 112211 11221 12211111122
Q ss_pred HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC--CCCHHHH---HHHHHHHH----hcC
Q 006275 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN--HLDIPSK---EMLEEAIS----EYK 590 (652)
Q Consensus 520 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~--~LD~~~~---~~l~~~l~----~~~ 590 (652)
.....++++.+.+. +..++++..||+||+|++ ++++.+|+++|+||||+ ++|.... ..+.+.|. +.+
T Consensus 96 ~~~~~~~~~~l~l~-~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g 171 (279)
T 1nlf_A 96 AEERQAVADGLLIQ-PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTG 171 (279)
T ss_dssp HHHHHHHHHHEEEC-CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCceEEe-ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcC
Confidence 33345567777764 445778999999998765 68888999999999999 9997544 44445444 346
Q ss_pred ceEEEEecCHHHHH
Q 006275 591 GTVITVSHDRYFVK 604 (652)
Q Consensus 591 ~tvi~vsHd~~~i~ 604 (652)
.|||+++|+.....
T Consensus 172 ~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 172 CSIVFLHHASKGAA 185 (279)
T ss_dssp CEEEEEEEC-----
T ss_pred CEEEEEecCCCccc
Confidence 79999999988764
No 199
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.55 E-value=1.8e-16 Score=180.78 Aligned_cols=169 Identities=17% Similarity=0.212 Sum_probs=99.1
Q ss_pred EEEEEeeeeEeCC--eeeeece----------EEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEECceeccc
Q 006275 424 VVTIKNLEFGYED--RLLFNRA----------NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVLLGEHNVLP 490 (652)
Q Consensus 424 ~i~~~~v~~~y~~--~~vl~~i----------sl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-~~G~i~~~g~~~~~ 490 (652)
.++++|+++.|++ +++++.+ +++++. +||+|||||||||||++|+|+..| ++|.|+++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5889999999975 3444444 366654 999999999999999999999988 79999999977411
Q ss_pred -------------ceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHH
Q 006275 491 -------------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKF 557 (652)
Q Consensus 491 -------------~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAra 557 (652)
++..| ...+.+..++.+++..... .+...+ . .+| ++++.++.+
T Consensus 87 ~~~~~~~~~~~~i~~v~Q--~~~l~~~~tv~e~i~~~~~---------~~~~~~--~--------~~s---~~~i~l~i~ 142 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDY--EIEISDASEVEKEINKAQN---------AIAGEG--M--------GIS---HELITLEIS 142 (608)
T ss_dssp EECSSSSCCEEEESCC-----CCCCCHHHHHTTHHHHHH---------HHHCSS--S--------CCC---SCCEEEEEE
T ss_pred ecCCccccceeEEeeecc--cccCCCHHHHHHHHHHHHH---------HhcCCc--c--------ccc---hHHHHHHhc
Confidence 12222 2334555677777654321 111100 0 011 122334444
Q ss_pred HccCCCeEEEeCC------CCCCCHHHHHHHHHHHHhc-----CceEEEEecCHHHH--------Hhh----ccEEEEEe
Q 006275 558 MVKPSTLLVLDEP------TNHLDIPSKEMLEEAISEY-----KGTVITVSHDRYFV--------KQI----VNRVVEVK 614 (652)
Q Consensus 558 l~~~p~lLlLDEP------t~~LD~~~~~~l~~~l~~~-----~~tvi~vsHd~~~i--------~~~----~drvi~l~ 614 (652)
....|+++|+||| |++||+..+..+.+++.++ ..++++++||++.+ ..+ ...|+++.
T Consensus 143 ~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlT 222 (608)
T 3szr_A 143 SRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILT 222 (608)
T ss_dssp ESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEE
T ss_pred CCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEec
Confidence 5568999999999 9999999999999999875 24889999997632 222 24577887
Q ss_pred CCEEE
Q 006275 615 GSNLQ 619 (652)
Q Consensus 615 ~g~i~ 619 (652)
++.+.
T Consensus 223 K~Dlv 227 (608)
T 3szr_A 223 KPDLV 227 (608)
T ss_dssp CGGGS
T ss_pred chhhc
Confidence 76554
No 200
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.54 E-value=1.3e-15 Score=177.78 Aligned_cols=161 Identities=16% Similarity=0.095 Sum_probs=98.2
Q ss_pred EEEEEeeeeEe-----CCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEECceecccceecccc
Q 006275 424 VVTIKNLEFGY-----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVLLGEHNVLPNYFEQNQ 497 (652)
Q Consensus 424 ~i~~~~v~~~y-----~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-~~G~i~~~g~~~~~~~~~~~~ 497 (652)
.|.+++...-. +++.++++++|+ ++|++++|+||||||||||||+|+|+..+ ..|... .......+++.+
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~v-pa~~~~i~~~~~-- 652 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYV-PAQKVEIGPIDR-- 652 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCB-SSSEEEECCCCE--
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCccc-chhcccceeHHH--
Confidence 46777654221 356789999999 99999999999999999999999997422 122100 000000001110
Q ss_pred cccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHH
Q 006275 498 AEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577 (652)
Q Consensus 498 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~ 577 (652)
++...++.+++ ....+.+|+|+++ ++.+...+.+|+++|||||++|+|+.
T Consensus 653 ---i~~~~~~~d~l--------------------------~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 653 ---IFTRVGAADDL--------------------------ASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ---EEEEEC-------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred ---HHhhCCHHHHH--------------------------HhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence 11111222221 1223346777765 44455568999999999998888876
Q ss_pred HHHHH-HHHH---Hh-cCceEEEEecCHHHHHhhccEEEEEeCCEEE
Q 006275 578 SKEML-EEAI---SE-YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 578 ~~~~l-~~~l---~~-~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~ 619 (652)
....+ ..++ .+ .+.++|++||+.+.+ .+||++..+.++++.
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~ 748 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHLD 748 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEEE
Confidence 65443 3443 33 366999999999876 478877666666553
No 201
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=2.7e-16 Score=170.84 Aligned_cols=161 Identities=15% Similarity=0.117 Sum_probs=91.7
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee--EEEECcee-cc---cceeccc
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEHN-VL---PNYFEQN 496 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G--~i~~~g~~-~~---~~~~~~~ 496 (652)
++|+++||+++|+++.+++++||+| +|+|+||||||||+++|+|...|..| .+.+++.. .. .++..+.
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~ 83 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 83 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC---
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec
Confidence 4599999999999889999999998 99999999999999999999876544 11111110 00 1111121
Q ss_pred ccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCC---eEEEeCCC-C
Q 006275 497 QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST---LLVLDEPT-N 572 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~---lLlLDEPt-~ 572 (652)
......+++++++.+............+.+ ..+. .++.+++||++|||+++.+|+ +|++|||| +
T Consensus 84 --~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~-------~i~~---~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~ 151 (418)
T 2qag_C 84 --GGVQLLLTIVDTPGFGDAVDNSNCWQPVID-------YIDS---KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH 151 (418)
T ss_dssp -----CEEEEEEECC-----------CHHHHH-------HHHH---HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CC
T ss_pred --CCcccceeeeechhhhhhccchhhHHHHHH-------HHHH---HHHHHHHHHHHHHHHhccCCCeeEEEEEecCccc
Confidence 122233455555443221100000111111 1111 256677889999999999999 99999999 6
Q ss_pred CCCHHHHHHHHHHHHhcCceEEEEecCHHHH
Q 006275 573 HLDIPSKEMLEEAISEYKGTVITVSHDRYFV 603 (652)
Q Consensus 573 ~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i 603 (652)
+||+.....+. .|.. +.+||+|.|..+.+
T Consensus 152 ~L~~~d~~~lk-~L~~-~v~iIlVinK~Dll 180 (418)
T 2qag_C 152 GLKPLDIEFMK-RLHE-KVNIIPLIAKADTL 180 (418)
T ss_dssp SCCHHHHHHHH-HHTT-TSEEEEEEESTTSS
T ss_pred CCCHHHHHHHH-HHhc-cCcEEEEEEcccCc
Confidence 99988754443 3333 56788888876643
No 202
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.53 E-value=1.5e-15 Score=161.84 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=90.5
Q ss_pred eece-EEEEEcCeEEEEEcCCCCcHHHHHHHHhCCC--CCCe----eE-EEECceecccceecccccccCCCCCCHHHHH
Q 006275 440 FNRA-NLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRG----GE-VLLGEHNVLPNYFEQNQAEALDLDKTVLETV 511 (652)
Q Consensus 440 l~~i-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~--~p~~----G~-i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~ 511 (652)
|+.+ ++.|++|++++|+||||||||||++.|++.. +|++ |. |++++.+... .+.+
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~-----------------~~~i 182 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----------------PERI 182 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC-----------------HHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC-----------------HHHH
Confidence 4443 5789999999999999999999999999998 7776 57 7777654210 0011
Q ss_pred HHhhh--hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHc-------cCCCeEEEeCCCCCCCHHH----
Q 006275 512 AEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-------KPSTLLVLDEPTNHLDIPS---- 578 (652)
Q Consensus 512 ~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~-------~~p~lLlLDEPt~~LD~~~---- 578 (652)
..... ..... .+++.+.+. +. .-|.+|+|++.++++++ .+|++||+||||+++|+..
T Consensus 183 ~~i~q~~~~~~~---~v~~ni~~~-----~~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~ 252 (349)
T 1pzn_A 183 REIAQNRGLDPD---EVLKHIYVA-----RA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRG 252 (349)
T ss_dssp HHHHHTTTCCHH---HHGGGEEEE-----EC--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTT
T ss_pred HHHHHHcCCCHH---HHhhCEEEE-----ec--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccc
Confidence 10000 00111 222221110 11 12678899999999998 6899999999999999862
Q ss_pred --------HHHHHHHHH----hcCceEEEEecCHHHHHhhccEEEEEeCCEEE
Q 006275 579 --------KEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 579 --------~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~drvi~l~~g~i~ 619 (652)
...+...|. +++.|||+++|....+...++......+|++.
T Consensus 253 ~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l 305 (349)
T 1pzn_A 253 ALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHIL 305 (349)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceE
Confidence 223333333 35679999999987665444444445555543
No 203
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.53 E-value=3.2e-14 Score=140.37 Aligned_cols=147 Identities=13% Similarity=0.052 Sum_probs=92.6
Q ss_pred eeeceEE-EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhh
Q 006275 439 LFNRANL-TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED 517 (652)
Q Consensus 439 vl~~isl-~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~ 517 (652)
.|+.+.. .|++|++++|+||||||||||++.|++ .+..+.++++... ..+. +.+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~----------------~~~~-~~~------ 62 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG----------------GFSP-ERL------ 62 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC----------------CCCH-HHH------
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC----------------CCCH-HHH------
Confidence 3444443 588999999999999999999999999 3333333333211 0011 011
Q ss_pred ccHHHHHHHHhhCCCChh-h-hccCcCCCCHHH--HHHHHHHHHHccC-CCeEEEeCCCCCCCHHHH--------HHH--
Q 006275 518 WRIDDIKGLLGRCNFKAD-M-LDRKVSLLSGGE--KARLAFCKFMVKP-STLLVLDEPTNHLDIPSK--------EML-- 582 (652)
Q Consensus 518 ~~~~~~~~~L~~~~l~~~-~-~~~~~~~LSgGq--rqrv~LAral~~~-p~lLlLDEPt~~LD~~~~--------~~l-- 582 (652)
...+..+++..+ . .+-.+..+|+++ +++++.+++++.+ |+++|+||||+.+|.... ..+
T Consensus 63 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~ 136 (220)
T 2cvh_A 63 ------VQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQ 136 (220)
T ss_dssp ------HHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHH
T ss_pred ------HHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHH
Confidence 011111111100 0 011233455664 5678888999986 999999999999997432 222
Q ss_pred --HHHHHhcCceEEEEecCHH-------------HHHhhccEEEEEeCC
Q 006275 583 --EEAISEYKGTVITVSHDRY-------------FVKQIVNRVVEVKGS 616 (652)
Q Consensus 583 --~~~l~~~~~tvi~vsHd~~-------------~i~~~~drvi~l~~g 616 (652)
.++.++.+.|||+++|... .+..+||++++|+..
T Consensus 137 ~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 137 VLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 2233345779999999875 678899999999743
No 204
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.53 E-value=3e-14 Score=140.56 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=56.7
Q ss_pred CCCChHH--HHHHHHHHHHccC-CCeEEEeCCCCCCCHHH--------HHHH----HHHHccCCCeEEEEecCHH-----
Q 006275 258 ASFSSGW--QMRMSLGKILLQD-PDLLLLDEPTNHLDLDT--------IEWL----EGYLGKQDVPMVIISHDRA----- 317 (652)
Q Consensus 258 ~~LSGGq--kqRv~LAraL~~~-p~iLLLDEPts~LD~~~--------~~~l----~~~L~~~g~tvIivsHd~~----- 317 (652)
.++|+++ +++++.+++++.+ |+++|+||||+++|+.. ...+ .++.++.++|||+++|...
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~ 162 (220)
T 2cvh_A 83 FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTE 162 (220)
T ss_dssp ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTS
T ss_pred EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCC
Confidence 3445554 5688888999986 99999999999999732 1222 2333456899999999865
Q ss_pred --------HHHhhcCeEEEEcCC
Q 006275 318 --------FLDQLCTKIVETEMG 332 (652)
Q Consensus 318 --------~l~~~~d~ii~l~~G 332 (652)
.+.++||+|++|+..
T Consensus 163 ~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 163 MTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SCCSCCCHHHHHTSSEEEEEEEC
T ss_pred ccccCCCcceeecCcEEEEEEEe
Confidence 677899999999754
No 205
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.51 E-value=1.9e-14 Score=161.41 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=71.0
Q ss_pred ccCcCCC-CHHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEE
Q 006275 538 DRKVSLL-SGGEKARLAFCKFMVKPS--TLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVE 612 (652)
Q Consensus 538 ~~~~~~L-SgGqrqrv~LAral~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~drvi~ 612 (652)
.+++..| ||||||||+|||||+.+| ++|||||||+|||+.+...+.+.|+++ +.|||+||||++.+. .|||+++
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~ 469 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYK 469 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEE
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEE
Confidence 4677788 999999999999999999 999999999999999999999999866 469999999999876 5999999
Q ss_pred EeCC
Q 006275 613 VKGS 616 (652)
Q Consensus 613 l~~g 616 (652)
|.++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
No 206
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.49 E-value=1.8e-15 Score=150.66 Aligned_cols=127 Identities=11% Similarity=0.143 Sum_probs=82.7
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCCC------ceEEEEeccCccCCCCCHHHHHHHhhHHH
Q 006275 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN------MKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (652)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p--~~G~i~~~~~~------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~ 189 (652)
-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.. ..++|++|++..+..+++..
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~--------- 81 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRD--------- 81 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTT---------
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcC---------
Confidence 36789999999999999999999999999986 67888775432 23677777643211000000
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHH
Q 006275 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269 (652)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~ 269 (652)
+.++.+.+ ...+.|-.+++
T Consensus 82 ---------------------------------------------------~f~E~~~~--------~~~~yg~~~~~-- 100 (219)
T 1s96_A 82 ---------------------------------------------------AFLEHAEV--------FGNYYGTSREA-- 100 (219)
T ss_dssp ---------------------------------------------------CEEEEEEE--------TTEEEEEEHHH--
T ss_pred ---------------------------------------------------HHHHHHHH--------HhccCCCCHHH--
Confidence 00000000 00011111222
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHh
Q 006275 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321 (652)
Q Consensus 270 LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~ 321 (652)
++.++..++++||| ||+.++..+.+.+. .+.||+++||+++.+..
T Consensus 101 -v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 101 -IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELDR 145 (219)
T ss_dssp -HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHH
T ss_pred -HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHH
Confidence 34555678999999 99999999999887 58899999999998865
No 207
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.47 E-value=5.2e-15 Score=159.01 Aligned_cols=124 Identities=22% Similarity=0.266 Sum_probs=91.7
Q ss_pred eeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCC-CcEEEECCCCc------eEEEEeccCccCCCCCHHHHHHH
Q 006275 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNM------KIAFLSQEFEVSMSRTVREEFMS 184 (652)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~-~G~i~~~~~~~------~i~~v~Q~~~~~~~~Tv~e~i~~ 184 (652)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|.|...+.+. .++|++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~--------------- 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR--------------- 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE---------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee---------------
Confidence 566655 7899999999999999999999999999997 89986543221 12222221
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHH
Q 006275 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264 (652)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGq 264 (652)
.+|+. +..|
T Consensus 190 ------------------------------------------------------------~~g~~-------~~~~---- 198 (372)
T 2ewv_A 190 ------------------------------------------------------------EVGED-------TKSF---- 198 (372)
T ss_dssp ------------------------------------------------------------EBTTT-------BSCS----
T ss_pred ------------------------------------------------------------ecCCC-------HHHH----
Confidence 11221 2344
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEc
Q 006275 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (652)
Q Consensus 265 kqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~ 330 (652)
+.+|+++|..+|++|++|||+ |+++...+.+.. ..|.+||.++|+.+ +...|||++.+.
T Consensus 199 --~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 --ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIF 257 (372)
T ss_dssp --HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHHTS
T ss_pred --HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHHhc
Confidence 469999999999999999999 888766555544 45889999999966 667888876553
No 208
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.46 E-value=1.8e-15 Score=146.48 Aligned_cols=149 Identities=14% Similarity=0.159 Sum_probs=92.8
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc--------ceecccccccCCCCCCHHHHHHHhhhh
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------NYFEQNQAEALDLDKTVLETVAEAAED 517 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--------~~~~~~~~~~~~~~~tv~e~~~~~~~~ 517 (652)
.+++|++++|+||||||||||+++|+|. |..|.|.+++.++.. .++.+... ...++.+++......
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 778999998865421 22222111 134566666543211
Q ss_pred ccH----HHHHHHHhhCCCChhhh--ccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC-
Q 006275 518 WRI----DDIKGLLGRCNFKADML--DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK- 590 (652)
Q Consensus 518 ~~~----~~~~~~L~~~~l~~~~~--~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~- 590 (652)
... ..+...+..+++ .... +.++..+|+|++|+++++|++.++|+++ +|+...+.+.+.+..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~ 149 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPDWL-PAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGA 149 (191)
T ss_dssp HHHTSCEEEECSCCCTTTT-HHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGG
T ss_pred HhccCCeEEEeccCcHHHH-HHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCc
Confidence 000 000011111222 1122 3456789999999999999999999887 68888888888776542
Q ss_pred -ceEEEEecCHHHHHhhccEE
Q 006275 591 -GTVITVSHDRYFVKQIVNRV 610 (652)
Q Consensus 591 -~tvi~vsHd~~~i~~~~drv 610 (652)
..+++.|++. .+..++++|
T Consensus 150 ~~~~~i~t~~~-~~~~~~~~i 169 (191)
T 1zp6_A 150 FEHHVLPVSGK-DTDQALQSA 169 (191)
T ss_dssp GGGGEEECTTC-CTTTTTTTT
T ss_pred ccccEEECCCC-CHHHHHHHH
Confidence 2344455432 233444444
No 209
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.46 E-value=5.5e-16 Score=150.06 Aligned_cols=132 Identities=15% Similarity=0.076 Sum_probs=81.5
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCc--------eEEEEeccCccCCCCCHHHHHHHhhHHHH
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~--------~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~ 190 (652)
.+++|++++|+||||||||||+++|+|. +..|.|.+++... .++|++|.+. +..++.+|+.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~--- 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG--- 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH---
Confidence 5789999999999999999999999998 7789998876421 1344444322 12344444421100
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccc--cCCCCCCChHHHHHH
Q 006275 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG--DRLVASFSSGWQMRM 268 (652)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~--~~~~~~LSGGqkqRv 268 (652)
.+ ... ... ..++ .++..+++. ... +.++..+|+|++||+
T Consensus 78 -------~~---~~~-~~~------------------~~~~---------~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 -------RY---AKE-GYF------------------VILD---------GVVRPDWLP-AFTALARPLHYIVLRTTAAE 118 (191)
T ss_dssp -------HH---HHT-SCE------------------EEEC---------SCCCTTTTH-HHHTTCSCEEEEEEECCHHH
T ss_pred -------HH---hcc-CCe------------------EEEe---------ccCcHHHHH-HHHhcCCCeEEEEecCCHHH
Confidence 00 000 000 0000 001111111 111 334578999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q 006275 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK 304 (652)
Q Consensus 269 ~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~ 304 (652)
++||++..+|+++ +|+...+.+.+.++.
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 9999999999876 688888888877754
No 210
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.46 E-value=2.6e-17 Score=176.62 Aligned_cols=165 Identities=13% Similarity=0.069 Sum_probs=97.7
Q ss_pred eeeeeeEEEEC--CCEEEEECCCCccHHHHHHHHHcCCCCCC----cEEEECCCCceEEEEeccCccCCCCCHHHHHHHh
Q 006275 112 VLKDVTWEVKK--GEKVGLVGVNGAGKTTQLRIIAGQEEPDS----GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185 (652)
Q Consensus 112 vL~~vsl~i~~--Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~----G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~ 185 (652)
+.+.|+++|.+ |++++|+||||||||||+++|+|+++|++ |++.+++.... .+. ....... +++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~-----~~~-~~~~~~~-~~I~~~ 229 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGG-----DEQ-AMQYSDY-PQMALG 229 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSS-----CTT-SSCTTTH-HHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCC-----Ccc-cCChhHH-HHHHHH
Confidence 35679999999 99999999999999999999999999998 77665311000 010 0111122 333321
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHH
Q 006275 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265 (652)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqk 265 (652)
+... . . .. . .+.+-+..++ ....+..+..+|+|++
T Consensus 230 ~q~~-------~-~---~~----------------------~----------t~~~nl~~~~--~~~~~~~~~~~~~~~~ 264 (365)
T 1lw7_A 230 HQRY-------I-D---YA----------------------V----------RHSHKIAFID--TDFITTQAFCIQYEGK 264 (365)
T ss_dssp HHHH-------H-H---HH----------------------H----------HHCSSEEEES--SCHHHHHHHHHHHHSC
T ss_pred HHHH-------H-H---HH----------------------H----------hccCCEEEEe--CCchHHHHHHHHHcCC
Confidence 1100 0 0 00 0 0000000001 0111222345667778
Q ss_pred HHHHHHHHHc-cCCCeEEEeC---CC------CCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcCeEEEE
Q 006275 266 MRMSLGKILL-QDPDLLLLDE---PT------NHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVET 329 (652)
Q Consensus 266 qRv~LAraL~-~~p~iLLLDE---Pt------s~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~d~ii~l 329 (652)
|+..+++++. .+|+++|||| |+ .++|+..+..+.+.| ++.+.+||+++|. ....++|+++..+
T Consensus 265 ~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i 341 (365)
T 1lw7_A 265 AHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVI 341 (365)
T ss_dssp CCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHH
Confidence 8888888875 6999999999 65 589998888887766 3458899999986 3444566555443
No 211
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.45 E-value=5.3e-15 Score=158.35 Aligned_cols=144 Identities=12% Similarity=0.110 Sum_probs=104.2
Q ss_pred EEEeEEEE---eCC--eeee---------eeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----
Q 006275 99 KLENISKS---YKG--VTVL---------KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---- 160 (652)
Q Consensus 99 ~v~~ls~~---y~~--~~vL---------~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~---- 160 (652)
++++++|+ |++ .++| +++||.|++|++++|+||||||||||+++|+|+++|++|.|.+++..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 56778887 753 2355 99999999999999999999999999999999999999999987532
Q ss_pred ----ceEEEEe-ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcH
Q 006275 161 ----MKIAFLS-QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (652)
Q Consensus 161 ----~~i~~v~-Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (652)
..++|++ |++..
T Consensus 217 ~~~~~~v~~v~~q~~~~--------------------------------------------------------------- 233 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAKE--------------------------------------------------------------- 233 (361)
T ss_dssp TTCSSEEEEECC--------------------------------------------------------------------
T ss_pred cccCCEEEEeecCcccc---------------------------------------------------------------
Confidence 1244444 32110
Q ss_pred HHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecC
Q 006275 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD 315 (652)
Q Consensus 236 ~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd 315 (652)
.++++..+|..|+.++..+|+.+++|||.. .+..+.+ +.+..-..|++.++|.
T Consensus 234 -----------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---~~~~~~l-~~l~~g~~~~l~t~H~ 286 (361)
T 2gza_A 234 -----------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---GEAYDFI-NVAASGHGGSITSCHA 286 (361)
T ss_dssp ----------------------------CCHHHHHHHHTTSCCSEEEESCCCS---THHHHHH-HHHHTTCCSCEEEEEC
T ss_pred -----------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH---HHHHHHH-HHHhcCCCeEEEEECC
Confidence 013444577888889999999999999986 2333333 3333334578999999
Q ss_pred HHHHHhhcCeEEEEcCCe
Q 006275 316 RAFLDQLCTKIVETEMGV 333 (652)
Q Consensus 316 ~~~l~~~~d~ii~l~~G~ 333 (652)
.+ +...++|++.+..+.
T Consensus 287 ~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 287 GS-CELTFERLALMVLQN 303 (361)
T ss_dssp SS-HHHHHHHHHHHHTTS
T ss_pred CC-HHHHHHHHHHHHhcc
Confidence 66 668899998887664
No 212
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.44 E-value=1.5e-15 Score=162.96 Aligned_cols=165 Identities=12% Similarity=0.134 Sum_probs=103.3
Q ss_pred eeeceEEEEEc--CeEEEEEcCCCCcHHHHHHHHhCCCCCCe----eEEEECceecccceecccccccCCCCCCHHHHHH
Q 006275 439 LFNRANLTIER--GEKTAIIGPNGCGKSTLLKLIMGLEKPRG----GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512 (652)
Q Consensus 439 vl~~isl~i~~--Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~----G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~ 512 (652)
+.+.|+++|.+ |++++|+||||||||||+++|+|+++|++ |++.+++.. .. ....+ ..... +++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~------~~-~~~~~-~~~~~-~~I~ 227 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKL------GG-DEQAM-QYSDY-PQMA 227 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSS------SS-CTTSS-CTTTH-HHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhc------CC-CcccC-ChhHH-HHHH
Confidence 35679999999 99999999999999999999999999998 666543110 00 00000 11122 3343
Q ss_pred HhhhhccHHHHHHHHhhCCC-ChhhhccCcCCCCHHHHHHHHHHHHHc-cCCCeEEEeC---CC------CCCCHHHHHH
Q 006275 513 EAAEDWRIDDIKGLLGRCNF-KADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDE---PT------NHLDIPSKEM 581 (652)
Q Consensus 513 ~~~~~~~~~~~~~~L~~~~l-~~~~~~~~~~~LSgGqrqrv~LAral~-~~p~lLlLDE---Pt------~~LD~~~~~~ 581 (652)
........ ......+.+-+ ..+..+..+..+|+|++|+..+++++. .+|++++||| |+ .++|...+..
T Consensus 228 ~~~q~~~~-~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~ 306 (365)
T 1lw7_A 228 LGHQRYID-YAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQ 306 (365)
T ss_dssp HHHHHHHH-HHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHH
T ss_pred HHHHHHHH-HHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHH
Confidence 32211110 00111111101 012233445567788888888888875 6999999999 65 5899999999
Q ss_pred HHHHHHh----cCceEEEEecCHHHHHhhccEEEEEe
Q 006275 582 LEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVK 614 (652)
Q Consensus 582 l~~~l~~----~~~tvi~vsHd~~~i~~~~drvi~l~ 614 (652)
+.++|.+ .+.+||+++|. ....++++++..++
T Consensus 307 l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 307 FQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 9988843 35699999986 46667787776665
No 213
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.44 E-value=1.5e-14 Score=155.44 Aligned_cols=127 Identities=14% Similarity=0.148 Sum_probs=86.9
Q ss_pred eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEECceecccceecccccccCCCCCCHHHHHHHhhh
Q 006275 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE 516 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~ 516 (652)
.+|++++ +++|++++|+||||||||||+++|+|+++|+ +|.|.+.+.++. +..... ..+. .
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e--~~~~~~-~~~v-------------~ 187 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE--YVFKHK-KSIV-------------N 187 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC--SCCCCS-SSEE-------------E
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh--hhhccC-ceEE-------------E
Confidence 3577765 7899999999999999999999999999998 899976554331 100000 0000 0
Q ss_pred hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEE
Q 006275 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITV 596 (652)
Q Consensus 517 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~v 596 (652)
.. .+|+ .+..| +.+|+++|..+|++|++|||+ |.++...+.+.. ..+.+|+++
T Consensus 188 Q~----------~~g~-------~~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t 240 (372)
T 2ewv_A 188 QR----------EVGE-------DTKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGT 240 (372)
T ss_dssp EE----------EBTT-------TBSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEEC
T ss_pred ee----------ecCC-------CHHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEE
Confidence 00 1222 12334 469999999999999999999 777655444433 335689999
Q ss_pred ecCHHHHHhhccEE
Q 006275 597 SHDRYFVKQIVNRV 610 (652)
Q Consensus 597 sHd~~~i~~~~drv 610 (652)
+|+.+ +...+||+
T Consensus 241 ~H~~~-~~~~~~rl 253 (372)
T 2ewv_A 241 LHTNT-AIDTIHRI 253 (372)
T ss_dssp CCCCS-HHHHHHHH
T ss_pred ECcch-HHHHHHHH
Confidence 99865 55566665
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.43 E-value=7.8e-15 Score=158.90 Aligned_cols=179 Identities=15% Similarity=0.099 Sum_probs=104.8
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCE--EEEECCCCccHHHHHHHHHcCCCCCCcEEEEC---C-CCceEEEEeccC
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA---K-SNMKIAFLSQEF 170 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~---~-~~~~i~~v~Q~~ 170 (652)
.+++++ +++|++.+ |+++||+|++|++ ++|+||||||||||+++|+|+.- .|..... + ....++|++|++
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~ 91 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQES 91 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC-
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecC
Confidence 367777 89998888 9999999999999 99999999999999999999852 2221110 1 012699999998
Q ss_pred ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhc-CCC
Q 006275 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL-GFT 249 (652)
Q Consensus 171 ~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l-gl~ 249 (652)
.+.+..||.||+..+.. .........+.. .+...+.+++... ++.
T Consensus 92 ~l~~~ltv~D~~~~g~~--~~~~~~~~~i~~--------------------------------~i~~q~~~~L~e~~~i~ 137 (427)
T 2qag_B 92 NVRLKLTIVSTVGFGDQ--INKEDSYKPIVE--------------------------------FIDAQFEAYLQEELKIR 137 (427)
T ss_dssp -CEEEEEEEEEECCCC---CCHHHHSHHHHH--------------------------------HHHHHHHHHHHHC--CC
T ss_pred ccccccchhhhhhhhhc--cccchhhhHHHH--------------------------------HHHHHHHHHHHHHHhhh
Confidence 77667788887632110 000000000000 0111122222221 211
Q ss_pred c---ccccCC-----------CCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH----HccCCCeEEE
Q 006275 250 A---DDGDRL-----------VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVI 311 (652)
Q Consensus 250 ~---~~~~~~-----------~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~----L~~~g~tvIi 311 (652)
. ...+.. ...|+-.. +.++++|..+++|+++|+|+..|.+.....+.+. |+..|++|+.
T Consensus 138 r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~ 214 (427)
T 2qag_B 138 RVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQ 214 (427)
T ss_dssp CCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCC
T ss_pred hhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEe
Confidence 0 001111 12455555 7999999999999999999999998877666543 5567999999
Q ss_pred EecCH
Q 006275 312 ISHDR 316 (652)
Q Consensus 312 vsHd~ 316 (652)
+|.|-
T Consensus 215 is~~d 219 (427)
T 2qag_B 215 FPTDD 219 (427)
T ss_dssp CC---
T ss_pred cCCCc
Confidence 98763
No 215
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.43 E-value=1.2e-15 Score=144.23 Aligned_cols=82 Identities=22% Similarity=0.089 Sum_probs=70.3
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCce-----EEEEeccCccCC
Q 006275 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK-----IAFLSQEFEVSM 174 (652)
Q Consensus 100 v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~-----i~~v~Q~~~~~~ 174 (652)
.+++++.|+++.+++++||+|++|++++|+||||||||||+++|+|++ |++|+|.++|.... -.|++|++.++
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~- 87 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY- 87 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT-
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc-
Confidence 346778887778999999999999999999999999999999999999 99999998875431 12689998776
Q ss_pred CCCHHHHHH
Q 006275 175 SRTVREEFM 183 (652)
Q Consensus 175 ~~Tv~e~i~ 183 (652)
.+|+.||+.
T Consensus 88 ~ltv~e~l~ 96 (158)
T 1htw_A 88 RLADPEELE 96 (158)
T ss_dssp TCSCTTHHH
T ss_pred cCCcHHHHH
Confidence 889999874
No 216
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.42 E-value=8.6e-17 Score=155.87 Aligned_cols=164 Identities=14% Similarity=0.143 Sum_probs=100.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc----ceecccccccCCCCCCHHHHHHHhhhhccHHHHHH
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 525 (652)
|++++|+||||||||||+++|++ |.+|.+.+++.++.. +++.+.. ......++++++..............
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 76 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWE--SDELLALTWKNITDLTVNFLLAQNDV 76 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGG--CHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCcc--chhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 78999999999999999999997 667889998765421 2222211 11112345555543221100000000
Q ss_pred HHhhCCCChhhhccCcCCC--CHHHHHHHHHHH------HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEE
Q 006275 526 LLGRCNFKADMLDRKVSLL--SGGEKARLAFCK------FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVI 594 (652)
Q Consensus 526 ~L~~~~l~~~~~~~~~~~L--SgGqrqrv~LAr------al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi 594 (652)
+++.+. ... ..+.+..+ |+|++|++.++. +++.+|....+|+ +||+..... .+.+..+ +.++|
T Consensus 77 ild~~~-~~~-~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii 150 (189)
T 2bdt_A 77 VLDYIA-FPD-EAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFY 150 (189)
T ss_dssp EEESCC-CHH-HHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEE
T ss_pred EEeecc-CHH-HHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEE
Confidence 111111 111 11222335 889988888888 8888888888884 899988877 7777654 35899
Q ss_pred EEecC-HHHHHhhccEEEEEeCCEEEeecCChhh
Q 006275 595 TVSHD-RYFVKQIVNRVVEVKGSNLQDYAGDYNV 627 (652)
Q Consensus 595 ~vsHd-~~~i~~~~drvi~l~~g~i~~~~g~~~~ 627 (652)
.+||. ++.++++||+|+ ++|++. ..|+++.
T Consensus 151 ~tsh~~~~~~e~~~~~i~--~~g~~~-~~~~~~~ 181 (189)
T 2bdt_A 151 NTSHLQPTNLNDIVKNLK--TNPRFI-FCMAGDP 181 (189)
T ss_dssp ECSSSCGGGHHHHHHHHH--HCGGGS-CC-----
T ss_pred eCCCCChhhHHHHHHHHh--hCCcEE-EeecCCc
Confidence 99999 999999999999 999986 4566543
No 217
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.41 E-value=1.4e-16 Score=154.39 Aligned_cols=163 Identities=12% Similarity=0.045 Sum_probs=97.7
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHH
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~ 198 (652)
|++++|+||||||||||+++|++ |.+|.+.+++.. ..+++++|........++++++..... .
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~ 68 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTV----------N 68 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHH----------H
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHH----------H
Confidence 67999999999999999999997 668888887532 134555554322122244444321100 0
Q ss_pred HHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCC--ChHHHHHHHHHH----
Q 006275 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF--SSGWQMRMSLGK---- 272 (652)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~L--SGGqkqRv~LAr---- 272 (652)
.... .. ..+++.+.. ....+....+ |+|++|++.++.
T Consensus 69 ---~~~~-~~-------------------------------~~ild~~~~--~~~~~~~~~~~~s~g~~~~~~~i~L~~~ 111 (189)
T 2bdt_A 69 ---FLLA-QN-------------------------------DVVLDYIAF--PDEAEALAQTVQAKVDDVEIRFIILWTN 111 (189)
T ss_dssp ---HHHT-TC-------------------------------EEEEESCCC--HHHHHHHHHHHHHHCSSEEEEEEEEECC
T ss_pred ---HHhc-CC-------------------------------cEEEeeccC--HHHHHHHHHHHHhcccCCCeEEEEEeCC
Confidence 0000 00 001111100 0000112234 889988988888
Q ss_pred --HHccCCCeEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecC-HHHHHhhcCeEEEEcCCeEEEecCChH
Q 006275 273 --ILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHD-RAFLDQLCTKIVETEMGVSRTYEGNYS 342 (652)
Q Consensus 273 --aL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd-~~~l~~~~d~ii~l~~G~~~~~~g~~~ 342 (652)
+++.+|....+|+ +||+..+.. .+.+ .+.+.++|.+||. ++.+.++||+|+ ++|++ .+.|+.+
T Consensus 112 ~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~-~~~~~~~ 180 (189)
T 2bdt_A 112 REELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRF-IFCMAGD 180 (189)
T ss_dssp HHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGG-SCC----
T ss_pred HHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcE-EEeecCC
Confidence 8999999888884 899987766 5544 3457899999999 999999999998 88887 4566543
No 218
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.40 E-value=2e-12 Score=129.51 Aligned_cols=145 Identities=14% Similarity=0.161 Sum_probs=79.9
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhC--CCCC-----CeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhc
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMG--LEKP-----RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g--~~~p-----~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~ 518 (652)
-|++|++++|+||||||||||++.|++ ..+| ..|.+++++...... . .+.+.. ... ..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~---~----------~~~~~~-~~~-g~ 84 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRP---E----------RLLAVA-ERY-GL 84 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH---H----------HHHHHH-HHT-TC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCH---H----------HHHHHH-HHc-CC
Confidence 489999999999999999999999999 5655 567777765431000 0 000000 000 00
Q ss_pred cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHH-HHHHHHHc--cCCCeEEEeCCCCCCCHH-------H-----HHHHH
Q 006275 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR-LAFCKFMV--KPSTLLVLDEPTNHLDIP-------S-----KEMLE 583 (652)
Q Consensus 519 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqr-v~LAral~--~~p~lLlLDEPt~~LD~~-------~-----~~~l~ 583 (652)
..+ ++++.+. ....++..+... +.-+..++ .+|+++++|||++.+|.. + ...+.
T Consensus 85 ~~~---~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~ 153 (243)
T 1n0w_A 85 SGS---DVLDNVA--------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFL 153 (243)
T ss_dssp CHH---HHHHTEE--------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHH
T ss_pred CHH---HHhhCeE--------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHH
Confidence 111 1112111 111245554433 22233333 589999999999999975 3 12222
Q ss_pred HHH----HhcCceEEEEecCHHHHHh-------------------hccEEEEEeCC
Q 006275 584 EAI----SEYKGTVITVSHDRYFVKQ-------------------IVNRVVEVKGS 616 (652)
Q Consensus 584 ~~l----~~~~~tvi~vsHd~~~i~~-------------------~~drvi~l~~g 616 (652)
..| ++.+.|||+++|....... +||++++|+.+
T Consensus 154 ~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 154 RMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 222 2346799999997665443 79999999854
No 219
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.38 E-value=1.1e-13 Score=146.86 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=82.3
Q ss_pred eeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-CCCcEEEEC-CC------CceEEEEeccCccCCCCCHHHHHHH
Q 006275 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKA-KS------NMKIAFLSQEFEVSMSRTVREEFMS 184 (652)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-p~~G~i~~~-~~------~~~i~~v~Q~~~~~~~~Tv~e~i~~ 184 (652)
++++++. .+|++++|+||||||||||+++|+|..+ |.+|+|.+. |. ...+++++|++.++...+++++.+.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l~ 284 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLW 284 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhhc
Confidence 4555553 4799999999999999999999999999 999999875 42 2468999999877666677664210
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHH
Q 006275 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264 (652)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGq 264 (652)
. +...++...+.++++.+|+. ...++.+.+|| ||
T Consensus 285 ~--------------------------------------------l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G~ 318 (358)
T 2rcn_A 285 H--------------------------------------------LEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-GC 318 (358)
T ss_dssp C--------------------------------------------CCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-TC
T ss_pred C--------------------------------------------CCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-HH
Confidence 0 11112234455778888886 56788999999 99
Q ss_pred HHHHHHHHHH
Q 006275 265 QMRMSLGKIL 274 (652)
Q Consensus 265 kqRv~LAraL 274 (652)
+||++||+++
T Consensus 319 ~~r~ala~gl 328 (358)
T 2rcn_A 319 AIREAVENGA 328 (358)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhcC
Confidence 9999999875
No 220
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.37 E-value=8.3e-13 Score=141.87 Aligned_cols=75 Identities=28% Similarity=0.470 Sum_probs=67.7
Q ss_pred cCcCCCCHHHHHHH------HHHHHHccC-CCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccE
Q 006275 539 RKVSLLSGGEKARL------AFCKFMVKP-STLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNR 609 (652)
Q Consensus 539 ~~~~~LSgGqrqrv------~LAral~~~-p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~dr 609 (652)
+++..||||||||+ ++|++++.+ |++|||||||++||+..+..+.+.|.+.. .+||+|||+.+ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56778999999988 567899999 99999999999999999999999998764 49999999987 5788999
Q ss_pred EEEEe
Q 006275 610 VVEVK 614 (652)
Q Consensus 610 vi~l~ 614 (652)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 221
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.37 E-value=7.7e-14 Score=138.89 Aligned_cols=127 Identities=13% Similarity=0.262 Sum_probs=79.1
Q ss_pred EEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEECceeccc------ceecccccccCCCCCCHHHHHHHhhh
Q 006275 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNVLP------NYFEQNQAEALDLDKTVLETVAEAAE 516 (652)
Q Consensus 445 l~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~~~------~~~~~~~~~~~~~~~tv~e~~~~~~~ 516 (652)
-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+... .|++|... ..+.+... .
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~--------~f~~~~~~-~ 81 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD--------EFKEMISR-D 81 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHH--------HHHHHHHT-T
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHH--------HHHHHHhc-C
Confidence 46789999999999999999999999999986 78888877654322 12222110 01110000 0
Q ss_pred hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEE
Q 006275 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITV 596 (652)
Q Consensus 517 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~v 596 (652)
+.++...+ ...+.|-.++. +..++..++++||| ||+.+...+.+.+. .+.||+++
T Consensus 82 --------~f~E~~~~--------~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~ 136 (219)
T 1s96_A 82 --------AFLEHAEV--------FGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFIL 136 (219)
T ss_dssp --------CEEEEEEE--------TTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEE
T ss_pred --------HHHHHHHH--------HhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEE
Confidence 00000000 00111111222 34556678999999 99999999999887 35699999
Q ss_pred ecCHHHHHh
Q 006275 597 SHDRYFVKQ 605 (652)
Q Consensus 597 sHd~~~i~~ 605 (652)
||+++.+..
T Consensus 137 th~~~~l~~ 145 (219)
T 1s96_A 137 PPSKIELDR 145 (219)
T ss_dssp CSSHHHHHH
T ss_pred CCCHHHHHH
Confidence 999998876
No 222
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.36 E-value=2.3e-14 Score=144.89 Aligned_cols=133 Identities=21% Similarity=0.320 Sum_probs=92.1
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHh---CCCCCCeeEEEECceeccc------ceecccccccCCCCCCHHHHHHHhhh---
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVLLGEHNVLP------NYFEQNQAEALDLDKTVLETVAEAAE--- 516 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~---g~~~p~~G~i~~~g~~~~~------~~~~~~~~~~~~~~~tv~e~~~~~~~--- 516 (652)
++++++|+||||||||||+++|+ |+..|+.|.|.+++.+... ..+.+ ...+.+..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIE--KSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999 9999999998776543210 11112 1234455677777765211
Q ss_pred -------h--ccHHHHHHHHh--hCCC-----------ChhhhccCcCCCCHHHHHHHHHHHHH-ccCCCeEEEe----C
Q 006275 517 -------D--WRIDDIKGLLG--RCNF-----------KADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLD----E 569 (652)
Q Consensus 517 -------~--~~~~~~~~~L~--~~~l-----------~~~~~~~~~~~LSgGqrqrv~LAral-~~~p~lLlLD----E 569 (652)
. ....++..+.. .+++ .....++.+..||| |+ +|+ +.+|++++|| |
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 0 11222333321 2220 02345778889999 65 778 9999999999 9
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 006275 570 PTNHLDIPSKEMLEEAISEYK 590 (652)
Q Consensus 570 Pt~~LD~~~~~~l~~~l~~~~ 590 (652)
||++||..+...+.+.+.++.
T Consensus 177 P~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHHH
Confidence 999999999999999888763
No 223
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.36 E-value=3.3e-12 Score=127.88 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=28.3
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHc--CCCC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEP 149 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G--~~~p 149 (652)
-|++|++++|+||||||||||++.|++ ..+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~ 52 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPI 52 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCch
Confidence 489999999999999999999999999 5655
No 224
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.36 E-value=6.9e-15 Score=138.93 Aligned_cols=83 Identities=14% Similarity=0.036 Sum_probs=67.6
Q ss_pred EEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-----ceecccccccC
Q 006275 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----NYFEQNQAEAL 501 (652)
Q Consensus 427 ~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-----~~~~~~~~~~~ 501 (652)
.+++++.|+++.+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.. .+..|+ ..+
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~--~~l 86 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYH--FDL 86 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEE--EEC
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceec--ccc
Confidence 346778888788999999999999999999999999999999999999 999999998876532 123333 344
Q ss_pred CCCCCHHHHHHH
Q 006275 502 DLDKTVLETVAE 513 (652)
Q Consensus 502 ~~~~tv~e~~~~ 513 (652)
+ .+|+.+++..
T Consensus 87 ~-~ltv~e~l~~ 97 (158)
T 1htw_A 87 Y-RLADPEELEF 97 (158)
T ss_dssp T-TCSCTTHHHH
T ss_pred c-cCCcHHHHHH
Confidence 4 7888888754
No 225
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.35 E-value=4e-14 Score=151.59 Aligned_cols=152 Identities=14% Similarity=0.076 Sum_probs=101.7
Q ss_pred EEEeeeeE---eCC--eeee---------eceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccc
Q 006275 426 TIKNLEFG---YED--RLLF---------NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491 (652)
Q Consensus 426 ~~~~v~~~---y~~--~~vl---------~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~ 491 (652)
++++++|+ |++ ..+| +++||+|++|++++|+||||||||||+++|+|+++|++|.|.++|..-. .
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~-~ 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL-F 215 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC-C
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc-C
Confidence 67788888 753 3455 9999999999999999999999999999999999999999999874210 0
Q ss_pred eec-ccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC
Q 006275 492 YFE-QNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (652)
Q Consensus 492 ~~~-~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP 570 (652)
.. ......+.+ .. .....++++..++-.|+.++..+|+.+++|||
T Consensus 216 -~~~~~~~v~~v~---------------~q------------------~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~ 261 (361)
T 2gza_A 216 -LPDHPNHVHLFY---------------PS------------------EAKEEENAPVTAATLLRSCLRMKPTRILLAEL 261 (361)
T ss_dssp -CTTCSSEEEEEC---------------C----------------------------CCHHHHHHHHTTSCCSEEEESCC
T ss_pred -ccccCCEEEEee---------------cC------------------ccccccccccCHHHHHHHHHhcCCCEEEEcCc
Confidence 00 000000000 00 00001245556888999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEeCCE
Q 006275 571 TNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSN 617 (652)
Q Consensus 571 t~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~drvi~l~~g~ 617 (652)
.. .+... +.+.+..-..|++.++|..+ +...++|+..+..+.
T Consensus 262 r~---~~~~~-~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 262 RG---GEAYD-FINVAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp CS---THHHH-HHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred hH---HHHHH-HHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 86 22222 22223222247899999965 667788888886653
No 226
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.34 E-value=8.9e-14 Score=146.62 Aligned_cols=155 Identities=15% Similarity=0.217 Sum_probs=100.6
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------------ceEEEEeccCccCCCCCHHHHHH
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFEVSMSRTVREEFM 183 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------------~~i~~v~Q~~~~~~~~Tv~e~i~ 183 (652)
.++|++++|+||||||||||+++|+|+++|++|+|.+.+.+ ..+.|++|.....+..++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999987533 13668999887777778888874
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChH
Q 006275 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (652)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGG 263 (652)
.+... . .+. -+++..|.. ......+.+||
T Consensus 206 ~~~~~----------------~------------------------~d~--------vliDtaG~~-~~~~~l~~eL~-- 234 (328)
T 3e70_C 206 HAKAR----------------G------------------------IDV--------VLIDTAGRS-ETNRNLMDEMK-- 234 (328)
T ss_dssp HHHHH----------------T------------------------CSE--------EEEEECCSC-CTTTCHHHHHH--
T ss_pred HHHhc----------------c------------------------chh--------hHHhhccch-hHHHHHHHHHH--
Confidence 22100 0 000 012233332 11122223333
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHH---------HHHhhcCeEEEEcCCe
Q 006275 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA---------FLDQLCTKIVETEMGV 333 (652)
Q Consensus 264 qkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~---------~l~~~~d~ii~l~~G~ 333 (652)
.++|++..++++++||.++ +.|. .+.+..+-+..+.|+|++||.-+ .+....-.|..+..|.
T Consensus 235 -----~i~ral~~de~llvLDa~t-~~~~--~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge 305 (328)
T 3e70_C 235 -----KIARVTKPNLVIFVGDALA-GNAI--VEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQ 305 (328)
T ss_dssp -----HHHHHHCCSEEEEEEEGGG-TTHH--HHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSS
T ss_pred -----HHHHHhcCCCCEEEEecHH-HHHH--HHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCC
Confidence 4899999999999999555 4433 23333333456899999999532 2223344566666664
No 227
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.34 E-value=4.8e-14 Score=154.70 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=97.6
Q ss_pred eeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC----------------ceEEEEeccCccCCCC
Q 006275 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFEVSMSR 176 (652)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~----------------~~i~~v~Q~~~~~~~~ 176 (652)
-+++||++++|++++|+|+||||||||+++|+|++++++|+|.+.+.+ ..|+|++|.+...+..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 468999999999999999999999999999999999999999986421 1489999987666666
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCC
Q 006275 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (652)
Q Consensus 177 Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (652)
++++|+..+.. .. .|. -+++-.|..... ...
T Consensus 363 tV~e~l~~a~~----------------~~----~Dv----------------------------VLIDTaGrl~~~-~~l 393 (503)
T 2yhs_A 363 VIFDAIQAAKA----------------RN----IDV----------------------------LIADTAGRLQNK-SHL 393 (503)
T ss_dssp HHHHHHHHHHH----------------TT----CSE----------------------------EEECCCCSCCCH-HHH
T ss_pred HHHHHHHHHHh----------------cC----CCE----------------------------EEEeCCCccchh-hhH
Confidence 78887742210 00 000 012222322110 111
Q ss_pred CCCCChHHHHHHHHHHHHc-cCCC-eEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEec
Q 006275 257 VASFSSGWQMRMSLGKILL-QDPD-LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314 (652)
Q Consensus 257 ~~~LSGGqkqRv~LAraL~-~~p~-iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsH 314 (652)
+. -.+|++.+++++. ..|+ +||..+|++|.|... .+..+-+..+.|.|++||
T Consensus 394 m~----EL~kiv~iar~l~~~~P~evLLvLDattGq~al~--~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 394 ME----ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS--QAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp HH----HHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH--HHHHHHHHTCCSEEEEEC
T ss_pred HH----HHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH--HHHHHHhhcCCCEEEEEc
Confidence 12 2347888898774 4564 565666999866543 233333346889999999
No 228
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.33 E-value=1.1e-14 Score=147.19 Aligned_cols=143 Identities=20% Similarity=0.190 Sum_probs=86.0
Q ss_pred CCCEEEEECCCCccHHHHHHHHH---cCCCCCCcEEEECCCC------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHH
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIA---GQEEPDSGNVIKAKSN------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEI 192 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~---G~~~p~~G~i~~~~~~------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~ 192 (652)
++++++|+||||||||||+++|+ |+..|+.|+|.+.+.. ..+++++|+..+.+..++.+++...+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~---- 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELEN---- 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----
Confidence 47899999999999999999999 9999999988765421 1233344554444444566555321100
Q ss_pred HHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHh--hhcCC-----------CcccccCCCCC
Q 006275 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM--PELGF-----------TADDGDRLVAS 259 (652)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll--~~lgl-----------~~~~~~~~~~~ 259 (652)
......- +. .... .. ..+..+. ..+++ .....++.+..
T Consensus 102 ----------~~~~~~i---l~--------------g~~~-~~-~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~ 152 (246)
T 2bbw_A 102 ----------RRGQHWL---LD--------------GFPR-TL-GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152 (246)
T ss_dssp ----------CTTSCEE---EE--------------SCCC-SH-HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET
T ss_pred ----------cCCCeEE---EE--------------CCCC-CH-HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC
Confidence 0000000 00 0000 00 0011110 11110 01234567789
Q ss_pred CChHHHHHHHHHHHH-ccCCCeEEEe----CCCCCCCHHHHHHHHHHHcc
Q 006275 260 FSSGWQMRMSLGKIL-LQDPDLLLLD----EPTNHLDLDTIEWLEGYLGK 304 (652)
Q Consensus 260 LSGGqkqRv~LAraL-~~~p~iLLLD----EPts~LD~~~~~~l~~~L~~ 304 (652)
||| |+ +|+ +.+|++++|| |||++||+.+.+.+.+.|++
T Consensus 153 lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~ 195 (246)
T 2bbw_A 153 PSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ 195 (246)
T ss_dssp TTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred CCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHH
Confidence 999 66 778 9999999999 99999999998888776643
No 229
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.30 E-value=3.4e-13 Score=146.40 Aligned_cols=146 Identities=23% Similarity=0.263 Sum_probs=90.5
Q ss_pred eeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC-----------CCCcEEEECCCCceEEEEeccCccCCCCCHHHH
Q 006275 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----------PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREE 181 (652)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----------p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~ 181 (652)
-++++|+++.|+.++|||+||||||||+++|+|..+ |..|.|.+++ ... -.+.+.|.+... ..++
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~-~~l~DtpGli~~--a~~~ 222 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EER-FTLADIPGIIEG--ASEG 222 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCE-EEEEECCCCCCC--GGGS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cce-EEEEeccccccc--hhhh
Confidence 478999999999999999999999999999999843 3334443331 011 122233322111 0000
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCC
Q 006275 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261 (652)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LS 261 (652)
. .+... ++ +. .++++.++..+++. +.++.+||
T Consensus 223 ~--~L~~~--------------------------fl-------~~---------~era~~lL~vvDls----~~~~~~ls 254 (416)
T 1udx_A 223 K--GLGLE--------------------------FL-------RH---------IARTRVLLYVLDAA----DEPLKTLE 254 (416)
T ss_dssp C--CSCHH--------------------------HH-------HH---------HTSSSEEEEEEETT----SCHHHHHH
T ss_pred h--hhhHH--------------------------HH-------HH---------HHHHHhhhEEeCCc----cCCHHHHH
Confidence 0 00000 00 00 00112344445542 45678899
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHH---HHHHHHccCCCeEEEEec
Q 006275 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE---WLEGYLGKQDVPMVIISH 314 (652)
Q Consensus 262 GGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~---~l~~~L~~~g~tvIivsH 314 (652)
+||+|++++|++|+..|.+|+| |.+|+.... .+.+.+++.+.++|+||.
T Consensus 255 ~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 255 TLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 9999999999999999999999 999986543 233445556777777663
No 230
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.29 E-value=4.4e-13 Score=141.35 Aligned_cols=156 Identities=13% Similarity=0.058 Sum_probs=98.6
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc--------------c--eecccccccCCCCCCHHHH
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------------N--YFEQNQAEALDLDKTVLET 510 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--------------~--~~~~~~~~~~~~~~tv~e~ 510 (652)
.++|++++|+||||||||||++.|+|+++|++|+|.+.|.++.. + ++.| ...+++..+++++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q--~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKH--SYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECC--CTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEec--cccCCHHHHHHHH
Confidence 36899999999999999999999999999999999998877521 1 2222 2334556678888
Q ss_pred HHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC
Q 006275 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590 (652)
Q Consensus 511 ~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~ 590 (652)
+..+...... .-+++..|.. ...... ..+.-.++|++..++.+++||.+|. .|. ...+..+-+..+
T Consensus 204 l~~~~~~~~d---~vliDtaG~~-~~~~~l-------~~eL~~i~ral~~de~llvLDa~t~-~~~--~~~~~~~~~~~~ 269 (328)
T 3e70_C 204 IQHAKARGID---VVLIDTAGRS-ETNRNL-------MDEMKKIARVTKPNLVIFVGDALAG-NAI--VEQARQFNEAVK 269 (328)
T ss_dssp HHHHHHHTCS---EEEEEECCSC-CTTTCH-------HHHHHHHHHHHCCSEEEEEEEGGGT-THH--HHHHHHHHHHSC
T ss_pred HHHHHhccch---hhHHhhccch-hHHHHH-------HHHHHHHHHHhcCCCCEEEEecHHH-HHH--HHHHHHHHHhcC
Confidence 7654321000 0012223321 111222 2333358999999999999996665 322 222333333457
Q ss_pred ceEEEEecCHH---------HHHhhccEEEEEeCCEE
Q 006275 591 GTVITVSHDRY---------FVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 591 ~tvi~vsHd~~---------~i~~~~drvi~l~~g~i 618 (652)
.|+|++||.-. .+....-.|.++..|+.
T Consensus 270 it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 270 IDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp CCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 79999999532 33344457777877754
No 231
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=1.4e-13 Score=148.98 Aligned_cols=167 Identities=16% Similarity=0.197 Sum_probs=94.7
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeE--EEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEC---ceec-ccceeccccc
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG---EHNV-LPNYFEQNQA 498 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~--~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~---g~~~-~~~~~~~~~~ 498 (652)
+++++ ++.|++.+ |+++||+|++|++ ++|+||||||||||+++|+|+.- .|.-... +... ..++..|.
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~-- 90 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQE-- 90 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeec--
Confidence 66667 88998877 9999999999999 99999999999999999999841 1211000 0000 01222222
Q ss_pred ccCCCCCCHHHHHHHhhh-----hc------cHHHHHHHHhhC-CCCh---hhhccC----c-------CCCCHHHHHHH
Q 006275 499 EALDLDKTVLETVAEAAE-----DW------RIDDIKGLLGRC-NFKA---DMLDRK----V-------SLLSGGEKARL 552 (652)
Q Consensus 499 ~~~~~~~tv~e~~~~~~~-----~~------~~~~~~~~L~~~-~l~~---~~~~~~----~-------~~LSgGqrqrv 552 (652)
..+.+.+|+.+++.++.. .| -...+..+|... ++.. ...+.. + ..|+..+ +
T Consensus 91 ~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---i 167 (427)
T 2qag_B 91 SNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---L 167 (427)
T ss_dssp --CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---H
T ss_pred CccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---H
Confidence 111122233333222110 01 112334445443 3321 011222 1 2456555 7
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh-c---CceEEEEecCH
Q 006275 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE-Y---KGTVITVSHDR 600 (652)
Q Consensus 553 ~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-~---~~tvi~vsHd~ 600 (652)
.++++|..+++|+++|||+..|.+.....+.+.|++ + +.+|+.+|.|-
T Consensus 168 eilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 168 VTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp HHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred HHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 899999999999999999999999888877777764 3 45888888753
No 232
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.29 E-value=9.9e-15 Score=158.69 Aligned_cols=136 Identities=15% Similarity=0.089 Sum_probs=95.8
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-------------
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------------- 490 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~------------- 490 (652)
.++++++.+.|+...+|+++ +. .+|++++|+|||||||||||++|+|+++|.+|.|.+.+.++..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 35677788777766788888 54 8999999999999999999999999999999999887765411
Q ss_pred -ce---------ecccccccCCCC----CCHHHHHHHhhh---------hccHHHHHHHHhhCCCChhhhccCcCCCCHH
Q 006275 491 -NY---------FEQNQAEALDLD----KTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547 (652)
Q Consensus 491 -~~---------~~~~~~~~~~~~----~tv~e~~~~~~~---------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgG 547 (652)
++ ++|+++..+... .|+.+++..+.. ......+...|..+++... ..+.+||||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~---~~~~~LSgg 297 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF---LISSSLLGV 297 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH---HHHHHEEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH---HHHHHHHHH
Confidence 01 112221111111 467777765421 0111234445777787532 366789999
Q ss_pred HHHHHHHHHHHccCCCeEE
Q 006275 548 EKARLAFCKFMVKPSTLLV 566 (652)
Q Consensus 548 qrqrv~LAral~~~p~lLl 566 (652)
|+|| |||+++.+|++..
T Consensus 298 ~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 298 LAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEE--EEEEECTTTCEEE
T ss_pred HHHH--hhhhhcCCCCccC
Confidence 9999 9999999999976
No 233
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.28 E-value=1.1e-14 Score=153.42 Aligned_cols=144 Identities=17% Similarity=0.214 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC--------CCCeeEEEECceecccc-------------------------eecc-c
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLE--------KPRGGEVLLGEHNVLPN-------------------------YFEQ-N 496 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~--------~p~~G~i~~~g~~~~~~-------------------------~~~~-~ 496 (652)
++++|+|+||||||||++.|.|+. .|+.|+|.++|.++... ++.. .
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 78999999998765211 0100 0
Q ss_pred ccccCCCCCCHHHHHHHhhhhc------cHHH------HHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCe
Q 006275 497 QAEALDLDKTVLETVAEAAEDW------RIDD------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (652)
Q Consensus 497 ~~~~~~~~~tv~e~~~~~~~~~------~~~~------~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~l 564 (652)
+...+.++.++.|+...+.... .... +...+..++.. ...++. .+||+||+||+..+++++.+|++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~-~~~~~~-~~ls~g~~Q~~~ad~ill~k~dl 162 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAV-HADEQM-NQFTIAQSQVGYADRILLTKTDV 162 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETT-THHHHH-HHCHHHHHHHHTCSEEEEECTTT
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHH-HHHHHH-hhchHHHHHHHhCCEEEEECccc
Confidence 1111222333333322110000 0000 01122233332 222222 27999999999999999999998
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhc
Q 006275 565 LVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIV 607 (652)
Q Consensus 565 LlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~ 607 (652)
+ ||| ..+.+.|++. +.+|+++||+...+..+.
T Consensus 163 ~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~ 196 (318)
T 1nij_A 163 A--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLLF 196 (318)
T ss_dssp C--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGGS
T ss_pred C--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHHh
Confidence 7 999 5666666654 359999999754444443
No 234
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.28 E-value=1.7e-13 Score=131.51 Aligned_cols=109 Identities=20% Similarity=0.222 Sum_probs=72.0
Q ss_pred EEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHH
Q 006275 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (652)
Q Consensus 444 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~ 523 (652)
+|++.+|+.++|+||||+|||||+++|++.+.|.+|... .++ +..+.+. .+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~--------~~~------------~~~~~~~---------~~ 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG--------YFF------------DTKDLIF---------RL 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC--------CEE------------EHHHHHH---------HH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE--------EEE------------EHHHHHH---------HH
Confidence 456678999999999999999999999999876655210 011 1111110 01
Q ss_pred HHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHHHHHHHHHhc---CceEEEEecC
Q 006275 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN-HLDIPSKEMLEEAISEY---KGTVITVSHD 599 (652)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~-~LD~~~~~~l~~~l~~~---~~tvi~vsHd 599 (652)
......-. .. -+...+.+|++|+||||++ ++|+..+..+.+++... +.++|++||.
T Consensus 83 ~~~~~~~~------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 83 KHLMDEGK------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHTC------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHhcCch------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11111100 00 0112244899999999985 99999999999988753 5699999997
Q ss_pred HH
Q 006275 600 RY 601 (652)
Q Consensus 600 ~~ 601 (652)
..
T Consensus 143 ~~ 144 (180)
T 3ec2_A 143 SL 144 (180)
T ss_dssp CS
T ss_pred Ch
Confidence 64
No 235
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.28 E-value=4.1e-15 Score=157.77 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=67.4
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC--------------Cce
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS--------------NMK 162 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~--------------~~~ 162 (652)
.|+++++++.|+...+++++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+. ..+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 367788899997778999999999999999999999999999999999999999999987542 124
Q ss_pred EEEEeccCccCC
Q 006275 163 IAFLSQEFEVSM 174 (652)
Q Consensus 163 i~~v~Q~~~~~~ 174 (652)
++|++|++.++.
T Consensus 109 i~~v~q~~~~~~ 120 (337)
T 2qm8_A 109 MARLAIDRNAFI 120 (337)
T ss_dssp STTGGGCTTEEE
T ss_pred heeeccCccccc
Confidence 788999876654
No 236
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.26 E-value=1e-14 Score=153.45 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=40.7
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhh
Q 006275 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322 (652)
Q Consensus 258 ~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~ 322 (652)
.+||+||+||+..+++++.+|+++ ||| ..-.+.|.+ ++ .+.||+++||+...+..+
T Consensus 140 ~~ls~g~~Q~~~ad~ill~k~dl~--de~-----~~l~~~l~~-l~-~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 140 NQFTIAQSQVGYADRILLTKTDVA--GEA-----EKLHERLAR-IN-ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HHCHHHHHHHHTCSEEEEECTTTC--SCT-----HHHHHHHHH-HC-SSSCEEECCSSCCCGGGG
T ss_pred hhchHHHHHHHhCCEEEEECcccC--CHH-----HHHHHHHHH-hC-CCCeEEEecccCCCHHHH
Confidence 379999999999999999999987 999 222222322 33 478999999975544433
No 237
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.25 E-value=2.4e-14 Score=159.67 Aligned_cols=184 Identities=14% Similarity=0.050 Sum_probs=108.2
Q ss_pred eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCC-------ceEEEEeccCccCCCCCHHHHHH
Q 006275 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVREEFM 183 (652)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~-------~~i~~v~Q~~~~~~~~Tv~e~i~ 183 (652)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.+.+.. ..+++..|........|..+++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 46788999999999999999999999999999999999999999987643 23566666543212346666654
Q ss_pred HhhHH--------HHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhh-hcCCCccc--
Q 006275 184 SAFKE--------EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADD-- 252 (652)
Q Consensus 184 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~-~lgl~~~~-- 252 (652)
.++.. +.........+....... .. ...+.+......+..+.. .+++....
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh-~~-----------------~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~ 389 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGH-AS-----------------YSTLHAGDINQMVYRLESEPLKVPRSMLQ 389 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTC-EE-----------------EEEEECSSHHHHHHHHHSTTTCCCGGGGG
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCC-Cc-----------------ccccccCCHHHHHHHHHhcccccHHHHHh
Confidence 33221 000000000000000000 00 000011112222222211 12332111
Q ss_pred -cc---CCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEE--EecCHHHHHhhc
Q 006275 253 -GD---RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVI--ISHDRAFLDQLC 323 (652)
Q Consensus 253 -~~---~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIi--vsHd~~~l~~~~ 323 (652)
.+ .....+||||+||+++|. + | |+|||+.....+.+.+ .+.+.|+|+ +||+++.+...|
T Consensus 390 ~l~~vi~~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~ 457 (511)
T 2oap_1 390 FLDIALVQTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFL 457 (511)
T ss_dssp GCCEEEEEEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHH
T ss_pred hccEEEEEEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHc
Confidence 11 223568999999987751 2 7 9999998776655544 345788885 899999998877
Q ss_pred C
Q 006275 324 T 324 (652)
Q Consensus 324 d 324 (652)
+
T Consensus 458 g 458 (511)
T 2oap_1 458 G 458 (511)
T ss_dssp T
T ss_pred C
Confidence 4
No 238
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.25 E-value=5.9e-14 Score=148.80 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=58.5
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (652)
|+++++++.|+...+++++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.+.++
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 93 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcC
Confidence 5667888889777899999999999999999999999999999999999999999999887654
No 239
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.25 E-value=1.6e-14 Score=161.00 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=100.5
Q ss_pred eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee-ccc---c---eec---------------
Q 006275 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-VLP---N---YFE--------------- 494 (652)
Q Consensus 437 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~-~~~---~---~~~--------------- 494 (652)
..+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|++.|.+ +.. . ...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l 326 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHH
Confidence 357889999999999999999999999999999999999999999998754 210 0 011
Q ss_pred -----ccccccCCCCCCHHHHHHHh--h--hhc-----cHHHHHHHHhhC-----CCChhh---hc---cCcCCCCHHHH
Q 006275 495 -----QNQAEALDLDKTVLETVAEA--A--EDW-----RIDDIKGLLGRC-----NFKADM---LD---RKVSLLSGGEK 549 (652)
Q Consensus 495 -----~~~~~~~~~~~tv~e~~~~~--~--~~~-----~~~~~~~~L~~~-----~l~~~~---~~---~~~~~LSgGqr 549 (652)
|+++..+....+..|.+... . ... ....+.+++.++ ++...+ .+ .....+|+||+
T Consensus 327 ~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 327 RAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp HTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 11110111123333322111 0 000 001122333332 222111 11 23346899999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEE--EecCHHHHHhhccE
Q 006275 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVIT--VSHDRYFVKQIVNR 609 (652)
Q Consensus 550 qrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~--vsHd~~~i~~~~dr 609 (652)
||+++|. + | |+|||+.+.+.+.+.|.++ +.|+++ +||+++.+...|+.
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence 9987652 1 7 9999998877766666554 358875 89999999988753
No 240
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.23 E-value=6.1e-12 Score=117.48 Aligned_cols=89 Identities=17% Similarity=0.248 Sum_probs=65.5
Q ss_pred eeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee--EEEECceecccceecccccccCCCCCCHHHHHHHhhh
Q 006275 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE 516 (652)
Q Consensus 439 vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G--~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~ 516 (652)
+++++ +|+.++|+||||||||||+++|++...+ +| .+.+++.++ ...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~-------------~~~------------ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM-------------PLT------------ 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS-------------CCC------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh-------------hHH------------
Confidence 45665 8999999999999999999999999876 35 333332111 000
Q ss_pred hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---Cce-
Q 006275 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGT- 592 (652)
Q Consensus 517 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~t- 592 (652)
+++.+|++|+||||++ +|...++.+.++++.. +.+
T Consensus 79 ----------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~ 117 (149)
T 2kjq_A 79 ----------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGF 117 (149)
T ss_dssp ----------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCE
T ss_pred ----------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcE
Confidence 2356899999999998 6665588888887643 467
Q ss_pred EEEEecC
Q 006275 593 VITVSHD 599 (652)
Q Consensus 593 vi~vsHd 599 (652)
+|++||.
T Consensus 118 iiits~~ 124 (149)
T 2kjq_A 118 LLLGSEY 124 (149)
T ss_dssp EEEEESS
T ss_pred EEEECCC
Confidence 8888884
No 241
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.22 E-value=1.7e-14 Score=156.87 Aligned_cols=61 Identities=13% Similarity=0.228 Sum_probs=51.5
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~ 159 (652)
.++++++++.|+...+|+++ +. ++|++++|+|||||||||||++|+|+++|++|+|.+.+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 35667777777666688888 53 899999999999999999999999999999999987654
No 242
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.22 E-value=1.1e-12 Score=125.77 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=36.0
Q ss_pred ccCCCeEEEeCCCC-CCCHHHHHHHHHHHc---cCCCeEEEEecCHH
Q 006275 275 LQDPDLLLLDEPTN-HLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (652)
Q Consensus 275 ~~~p~iLLLDEPts-~LD~~~~~~l~~~L~---~~g~tvIivsHd~~ 317 (652)
+.+|++|+||||++ ++|+..+..+.+++. +.++++|++||...
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 34999999999995 999999998888764 36899999999753
No 243
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.22 E-value=4.9e-11 Score=128.90 Aligned_cols=142 Identities=13% Similarity=0.124 Sum_probs=82.1
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHH--HhCCCCCCee-----EEEECceecccceecccccccCCCCCCHHHHHHHhhhhc
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKL--IMGLEKPRGG-----EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~--l~g~~~p~~G-----~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~ 518 (652)
-|++|++++|+||||||||||++. +.++.+++.| .+++++.... .
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~----~------------------------ 225 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF----R------------------------ 225 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC----C------------------------
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc----C------------------------
Confidence 488999999999999999999994 4577776544 5666654210 0
Q ss_pred cHHHHHHHHhhCCCChhhh--ccCcCCCCHHHH--HHHHHHHHHc--cCCCeEEEeCCCCCCCHHHH------------H
Q 006275 519 RIDDIKGLLGRCNFKADML--DRKVSLLSGGEK--ARLAFCKFMV--KPSTLLVLDEPTNHLDIPSK------------E 580 (652)
Q Consensus 519 ~~~~~~~~L~~~~l~~~~~--~~~~~~LSgGqr--qrv~LAral~--~~p~lLlLDEPt~~LD~~~~------------~ 580 (652)
..++.....++++..... +-.+.....++. +.+.-++.++ .+|+++++|||++.+|.... .
T Consensus 226 -~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~ 304 (400)
T 3lda_A 226 -PVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLA 304 (400)
T ss_dssp -HHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHH
Confidence 001111122222211000 001111122333 3333333332 57999999999999996432 2
Q ss_pred HHHHHH----HhcCceEEEEecCH-------------------HHHHhhccEEEEEeCC
Q 006275 581 MLEEAI----SEYKGTVITVSHDR-------------------YFVKQIVNRVVEVKGS 616 (652)
Q Consensus 581 ~l~~~l----~~~~~tvi~vsHd~-------------------~~i~~~~drvi~l~~g 616 (652)
.+.+.| ++++.|||+|+|.. ..+..++|.++.|+.+
T Consensus 305 ~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 305 KFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 333333 34577999999983 2357779999999865
No 244
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.22 E-value=7.2e-14 Score=133.65 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=31.3
Q ss_pred CEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKS 159 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~~p~---~G~i~~~~~ 159 (652)
++++|+|+||||||||+++|+|+++|+ .|.|.+++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 589999999999999999999999998 899998764
No 245
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.21 E-value=2.8e-12 Score=139.26 Aligned_cols=152 Identities=20% Similarity=0.205 Sum_probs=94.4
Q ss_pred eeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCC-----------CCCCeeEEEECc-eecc----cceecccccccCCC
Q 006275 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLLGE-HNVL----PNYFEQNQAEALDL 503 (652)
Q Consensus 440 l~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~-----------~~p~~G~i~~~g-~~~~----~~~~~~~~~~~~~~ 503 (652)
-++++|+++.|++++|+|+|||||||||++|+|. +.|..|.|.+++ ..+. +++... ... ..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~-a~~--~~ 223 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG-ASE--GK 223 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC-GGG--SC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccc-hhh--hh
Confidence 3789999999999999999999999999999998 456667776654 2211 111100 000 00
Q ss_pred CCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHH
Q 006275 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583 (652)
Q Consensus 504 ~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~ 583 (652)
.+.. ..+.. .+.+..++..+++. +.++.+||+|++|++.+|++|+..|.||+| |.+|......+.
T Consensus 224 ~L~~-~fl~~------~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~ 288 (416)
T 1udx_A 224 GLGL-EFLRH------IARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVK 288 (416)
T ss_dssp CSCH-HHHHH------HTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHH
T ss_pred hhhH-HHHHH------HHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHH
Confidence 0110 00000 00111223333332 456778999999999999999999999999 999987664333
Q ss_pred HHH---HhcCceEEEEe-cCHHHHHhhccE
Q 006275 584 EAI---SEYKGTVITVS-HDRYFVKQIVNR 609 (652)
Q Consensus 584 ~~l---~~~~~tvi~vs-Hd~~~i~~~~dr 609 (652)
++. .+.+.++++|| |..+-+..+++.
T Consensus 289 ~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 289 ALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp HHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 333 33344666555 555445544443
No 246
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.19 E-value=1.8e-11 Score=129.89 Aligned_cols=137 Identities=12% Similarity=0.148 Sum_probs=76.7
Q ss_pred EEEEECCCCccHHHHHHHHHc-CCCCCCcEEEECCCC--------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHH
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKAKSN--------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G-~~~p~~G~i~~~~~~--------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~ 195 (652)
.+.|+||||+|||||+++|+| ++.|..|.+.+++.. ..+++++|.+.+..+.+-.. . ..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~-------- 105 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMG-N---ND-------- 105 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------CC--------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcC-C---cc--------
Confidence 399999999999999999999 788999998876532 34677777654322211000 0 00
Q ss_pred HHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 006275 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (652)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~ 275 (652)
.....+.+.++....++. ... .||| +.
T Consensus 106 ------------------------------------~~~~~~~i~~~~~~~~~~-----~~~-~ls~-----------l~ 132 (354)
T 1sxj_E 106 ------------------------------------RIVIQELLKEVAQMEQVD-----FQD-SKDG-----------LA 132 (354)
T ss_dssp ------------------------------------HHHHHHHHHHHTTTTC----------------------------
T ss_pred ------------------------------------hHHHHHHHHHHHHhcccc-----ccc-cccc-----------cC
Confidence 000011111222222221 111 5676 78
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH-HhhcCeEE
Q 006275 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL-DQLCTKIV 327 (652)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l-~~~~d~ii 327 (652)
.+|+++|+|||++ ||+.+.+.|.+.|.+ .++++|++||+.+.+ ..+.+|+.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~ 186 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCL 186 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSE
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhce
Confidence 8999999999999 999999999998864 467899999997643 23344543
No 247
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.17 E-value=1e-10 Score=126.36 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=29.3
Q ss_pred EEECCCEEEEECCCCccHHHHHH--HHHcCCCCCCc
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLR--IIAGQEEPDSG 152 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~--~L~G~~~p~~G 152 (652)
-|++|++++|+||||||||||++ ++.+..+++.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 58999999999999999999999 45677777554
No 248
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.17 E-value=2.2e-12 Score=134.68 Aligned_cols=122 Identities=17% Similarity=0.138 Sum_probs=82.6
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE---CCCCc----------eEEEEeccCccC-----CCCCHHH
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM----------KIAFLSQEFEVS-----MSRTVRE 180 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~---~~~~~----------~i~~v~Q~~~~~-----~~~Tv~e 180 (652)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ .|.+. .+||++|+|.+. +.+|+ +
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 44579999999999999999999999 99999999998 55321 379999998654 56788 7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCC
Q 006275 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (652)
Q Consensus 181 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~L 260 (652)
|+...|.+- ..+.-.+..+ ....+....+.++++.+|+.....++++..|
T Consensus 239 ~l~~~f~~~-------~~~~c~~~~~-----------------------~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~l 288 (302)
T 2yv5_A 239 EVRNYFREF-------LRYQCKYPDC-----------------------THTNEPGCAVKEAVKNGEISCERYKSYLKII 288 (302)
T ss_dssp GGGGGCGGG-------HHHHHHSTTC-----------------------CSSSCTTCHHHHHHHTTSSCHHHHHHHHHHT
T ss_pred HHHHHHHHH-------HHccCCCCCC-----------------------CCCCCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 774333210 0000000000 0111223457788999999754678889999
Q ss_pred ChHHHHHHHHHH
Q 006275 261 SSGWQMRMSLGK 272 (652)
Q Consensus 261 SGGqkqRv~LAr 272 (652)
||.+++++.|||
T Consensus 289 s~~~~R~~~~~~ 300 (302)
T 2yv5_A 289 KVYLEEIKELCR 300 (302)
T ss_dssp TCCCTTHHHHSS
T ss_pred HHHHHHHHHHhc
Confidence 999999999986
No 249
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.16 E-value=3e-12 Score=140.46 Aligned_cols=150 Identities=13% Similarity=0.075 Sum_probs=92.0
Q ss_pred eeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc----------------ceecccccccCCC
Q 006275 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------------NYFEQNQAEALDL 503 (652)
Q Consensus 440 l~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------------~~~~~~~~~~~~~ 503 (652)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.+.+... .++.|. ..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~--~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQH--TGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCS--TTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecc--cCcCH
Confidence 367899999999999999999999999999999999999999997655421 122222 22344
Q ss_pred CCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHc-cCC-CeEEEeCCCCCCCHHHHHH
Q 006275 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPS-TLLVLDEPTNHLDIPSKEM 581 (652)
Q Consensus 504 ~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~-~~p-~lLlLDEPt~~LD~~~~~~ 581 (652)
..++.+++........ + .-+++..|.... ....+. -.+|++.+++++. ..| .+||...||.|.|... .
T Consensus 361 ~~tV~e~l~~a~~~~~-D--vVLIDTaGrl~~-~~~lm~----EL~kiv~iar~l~~~~P~evLLvLDattGq~al~--~ 430 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNI-D--VLIADTAGRLQN-KSHLME----ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS--Q 430 (503)
T ss_dssp HHHHHHHHHHHHHTTC-S--EEEECCCCSCCC-HHHHHH----HHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH--H
T ss_pred HHHHHHHHHHHHhcCC-C--EEEEeCCCccch-hhhHHH----HHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH--H
Confidence 5567777765432110 0 001222222110 011111 2347888888774 346 3555555888865442 2
Q ss_pred HHHHHHhcCceEEEEecCHHH
Q 006275 582 LEEAISEYKGTVITVSHDRYF 602 (652)
Q Consensus 582 l~~~l~~~~~tvi~vsHd~~~ 602 (652)
+..+-...+.|.|++|| ++.
T Consensus 431 ak~f~~~~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 431 AKLFHEAVGLTGITLTK-LDG 450 (503)
T ss_dssp HHHHHHHTCCSEEEEEC-GGG
T ss_pred HHHHHhhcCCCEEEEEc-CCC
Confidence 33333345679999999 444
No 250
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.15 E-value=5.3e-12 Score=134.08 Aligned_cols=114 Identities=18% Similarity=0.047 Sum_probs=70.0
Q ss_pred eeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC-CCeeEEEEC-ceecc------cceecccccccCCCCCCHHHHH
Q 006275 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLG-EHNVL------PNYFEQNQAEALDLDKTVLETV 511 (652)
Q Consensus 440 l~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-p~~G~i~~~-g~~~~------~~~~~~~~~~~~~~~~tv~e~~ 511 (652)
++++++. .+|++++|+||||||||||+++|+|+.. |.+|.|.+. |.... ..++.|. ..+....++.++.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~--~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHG--GDVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTS--CEEEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCC--CEecCcccHHHhh
Confidence 3444443 3799999999999999999999999999 999999876 53321 1233332 2233344555431
Q ss_pred HHhhhh-ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHH
Q 006275 512 AEAAED-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (652)
Q Consensus 512 ~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral 558 (652)
...... .....+.++++.+++. .+.++.+.+|| ||+||++||+++
T Consensus 283 l~~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 LWHLEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CCCCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred hcCCCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-HHHHHHHHHhcC
Confidence 110000 0012245677778874 56789999999 999999999875
No 251
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.14 E-value=1.6e-13 Score=143.72 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=66.5
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEE-------------------ECCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEE
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEV-------------------KKGEKVGLVGVNGAGKTTQLRIIAGQEE--PDSGNVI 155 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i-------------------~~Ge~~~lvG~NGsGKSTLl~~L~G~~~--p~~G~i~ 155 (652)
.|+++||++.| .++++++++.+ ++|+++||+||||||||||+++|+|++. |++|+|.
T Consensus 37 ~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 48899999999 46899999988 8999999999999999999999999988 9999998
Q ss_pred E---CCCCc------eEEEEeccCccCCCCCHHHHH
Q 006275 156 K---AKSNM------KIAFLSQEFEVSMSRTVREEF 182 (652)
Q Consensus 156 ~---~~~~~------~i~~v~Q~~~~~~~~Tv~e~i 182 (652)
+ ++... .++++ |.+......++.+++
T Consensus 115 vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~ 149 (308)
T 1sq5_A 115 LITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLV 149 (308)
T ss_dssp EEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHH
T ss_pred EEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHH
Confidence 8 65321 24555 554444455666654
No 252
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.13 E-value=1.5e-14 Score=141.63 Aligned_cols=151 Identities=18% Similarity=0.225 Sum_probs=79.9
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCC-------------CCeeEEEECceeccc---ceeccc-ccccCCCCCCHHHH
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK-------------PRGGEVLLGEHNVLP---NYFEQN-QAEALDLDKTVLET 510 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~-------------p~~G~i~~~g~~~~~---~~~~~~-~~~~~~~~~tv~e~ 510 (652)
++|++++|+||||||||||+++|+|+++ |..|. ++|.++.. ..+... ....+.+..++.+|
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n 79 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDIAAGDFIEHAEFSGN 79 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHHHTCEEEEEEETTE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHHHcCCCEeeeeecCc
Confidence 5799999999999999999999999875 55554 24432210 000000 00000001111111
Q ss_pred HHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHH---HHHH-HHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 006275 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL---AFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586 (652)
Q Consensus 511 ~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv---~LAr-al~~~p~lLlLDEPt~~LD~~~~~~l~~~l 586 (652)
+ ++ ....++.+.++.-.. ...+.. -.|-++.. ..|+ +++.+|++++|||||+++|.++.+.+++.|
T Consensus 80 ~-~g---~~~~~i~~~~~~~~~--~~~~~~----~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l 149 (198)
T 1lvg_A 80 L-YG---TSKEAVRAVQAMNRI--CVLDVD----LQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRL 149 (198)
T ss_dssp E-EE---EEHHHHHHHHHTTCE--EEEECC----HHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred c-CC---CCHHHHHHHHHcCCc--EEEECC----HHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 1 00 123334444432110 000000 01111110 1456 788899999999999999999999998888
Q ss_pred HhcCceEEEEecCHHHHHhhccEEEEEeC
Q 006275 587 SEYKGTVITVSHDRYFVKQIVNRVVEVKG 615 (652)
Q Consensus 587 ~~~~~tvi~vsHd~~~i~~~~drvi~l~~ 615 (652)
.....- +.++| .. ..+|+|++.++
T Consensus 150 ~~~~~~-~~~a~--~~--~~~D~iivnd~ 173 (198)
T 1lvg_A 150 AAARTD-MESSK--EP--GLFDLVIINDD 173 (198)
T ss_dssp HHHHHH-TTGGG--ST--TTCSEEEECSS
T ss_pred HHHHHH-HHHhh--cc--CCceEEEECCC
Confidence 654221 24456 22 45898877653
No 253
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.13 E-value=1.5e-12 Score=135.06 Aligned_cols=136 Identities=14% Similarity=0.047 Sum_probs=78.0
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHH
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~ 200 (652)
+++.+++|+|++|||||||++.|.+++.+. |. ....+.+|+|+...+ ..++++|+.....+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~-----~~~~~~iv~~D~f~~-~~~~~~~l~~~~~~~----------- 90 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG-----GEKSIGYASIDDFYL-THEDQLKLNEQFKNN----------- 90 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG-----GGSCEEEEEGGGGBC-CHHHHHHHHHHTTTC-----------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC-----CCceEEEeccccccC-ChHHHHHHhcccccc-----------
Confidence 467899999999999999999999998763 20 012355669997653 446666653210000
Q ss_pred HHHhh--hcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcC---CCcccccCCCCCCChHHHHHHHHHHHHc
Q 006275 201 KALES--AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG---FTADDGDRLVASFSSGWQMRMSLGKILL 275 (652)
Q Consensus 201 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg---l~~~~~~~~~~~LSGGqkqRv~LAraL~ 275 (652)
..+.. .+. ..+...+.+.+..+...+. -...........+||||+||+++|++..
T Consensus 91 ~l~~~~g~p~--------------------a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~ 150 (290)
T 1odf_A 91 KLLQGRGLPG--------------------THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIK 150 (290)
T ss_dssp GGGSSSCSTT--------------------SBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEE
T ss_pred chhhhccCcc--------------------hhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceE
Confidence 00000 000 0111111222222211100 0001122334789999999999983333
Q ss_pred cCCCeEEEeCCCCCCCHHH
Q 006275 276 QDPDLLLLDEPTNHLDLDT 294 (652)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~ 294 (652)
.+|+|||+||||++||+..
T Consensus 151 ~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 151 LPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSCSEEEEEESSTTCCCCC
T ss_pred cCCCEEEEeCccccCCccc
Confidence 3999999999999999864
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.13 E-value=6.8e-13 Score=130.66 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=84.6
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCC---CeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHH
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKP---RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~ 523 (652)
.++|++++|+||||||||||+++|+|+++| ..|.|.++|..+...... +. ....... + ........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~-~~--~~~~~~~----~---~~~~~~~~~ 88 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLE-PR--GLLPRKG----A---PETFDFEGF 88 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHG-GG--TCGGGTT----S---GGGBCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHH-Hh--cccccCC----C---CchhhHHHH
Confidence 468999999999999999999999999985 578888877543211100 00 0000000 0 001111112
Q ss_pred HHHHhhC----CCChhhhccCcCCCCHHHHHHHHHH-HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEec
Q 006275 524 KGLLGRC----NFKADMLDRKVSLLSGGEKARLAFC-KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSH 598 (652)
Q Consensus 524 ~~~L~~~----~l~~~~~~~~~~~LSgGqrqrv~LA-ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsH 598 (652)
.+.+..+ ++.....+ ....+|+||+|++++| ++++.++.++++|||.. ..+.+....+|++.+
T Consensus 89 ~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd~ 156 (208)
T 3c8u_A 89 QRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLEV 156 (208)
T ss_dssp HHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEECC
T ss_pred HHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEeC
Confidence 2222211 11111122 2235799999999998 88888888888999842 112333457888888
Q ss_pred CHHH-HHhhccE
Q 006275 599 DRYF-VKQIVNR 609 (652)
Q Consensus 599 d~~~-i~~~~dr 609 (652)
+.+. +.+.+.|
T Consensus 157 ~~~~~~~R~~~R 168 (208)
T 3c8u_A 157 PMADLEARLVQR 168 (208)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 8876 5555555
No 255
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.12 E-value=3.5e-13 Score=132.74 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=81.6
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHH
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~ 199 (652)
.++|++++|+||||||||||+++|+|+++|. | ..+++++++.... ..+..+++.. +..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g--------~~~g~v~~d~~~~-~~~~~~~~~~-~~~----------- 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G--------LPAEVVPMDGFHL-DNRLLEPRGL-LPR----------- 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T--------CCEEEEESGGGBC-CHHHHGGGTC-GGG-----------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C--------CceEEEecCCCcC-CHHHHHHhcc-ccc-----------
Confidence 4789999999999999999999999999875 4 1366777764332 1111211100 000
Q ss_pred HHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHH-HHHccCC
Q 006275 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG-KILLQDP 278 (652)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LA-raL~~~p 278 (652)
..... ..+...+...+..+-..-.+..+..++ ...+|+||+||+++| ++++.++
T Consensus 77 ----~~~~~--------------------~~~~~~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg 131 (208)
T 3c8u_A 77 ----KGAPE--------------------TFDFEGFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEG 131 (208)
T ss_dssp ----TTSGG--------------------GBCHHHHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEE
T ss_pred ----CCCCc--------------------hhhHHHHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECC
Confidence 00000 000001111111111110111122333 356799999999998 8888888
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHH-HHhhcCe
Q 006275 279 DLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAF-LDQLCTK 325 (652)
Q Consensus 279 ~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~-l~~~~d~ 325 (652)
.++++|||.- ..+.+.--.+|+++++.+. +.+.+.|
T Consensus 132 ~~~l~de~~~-----------~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 132 NYLLFDAPGW-----------RDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp SSTTBCSTTG-----------GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred ceeccCCchh-----------HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 8888888731 1122222367778877775 4444444
No 256
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.12 E-value=9.9e-11 Score=124.11 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=69.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-CCCCCeeEEEECceecc--------cceecccccccCCCCCCHHHHHHHhhhhccHHH
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEHNVL--------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD 522 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g-~~~p~~G~i~~~g~~~~--------~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~ 522 (652)
.+.|+||||+|||||+++|+| ++.|..|.+.++|.++. ..++.+.....+..... .......
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM---------GNNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC-------------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhc---------CCcchHH
Confidence 389999999999999999999 88999999988875432 01111111000111000 0001011
Q ss_pred HHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCH
Q 006275 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDR 600 (652)
Q Consensus 523 ~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~ 600 (652)
+++.++.+.-... .+... .||| +..+|+++|||||++ ||..+...+.+.+.+.. .++|++||+.
T Consensus 109 ~~~~i~~~~~~~~-~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 109 IQELLKEVAQMEQ-VDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp HHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred HHHHHHHHHHhcc-ccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 2222222211000 11111 4566 788999999999999 99999999999999864 4899999997
Q ss_pred HH
Q 006275 601 YF 602 (652)
Q Consensus 601 ~~ 602 (652)
+.
T Consensus 175 ~~ 176 (354)
T 1sxj_E 175 SP 176 (354)
T ss_dssp CS
T ss_pred HH
Confidence 54
No 257
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.11 E-value=3e-12 Score=132.81 Aligned_cols=120 Identities=13% Similarity=0.009 Sum_probs=75.2
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccccee-cccccccCCCCCCHHHHHHHhh------------
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF-EQNQAEALDLDKTVLETVAEAA------------ 515 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~-~~~~~~~~~~~~tv~e~~~~~~------------ 515 (652)
++.++||+|++|||||||.+.|.+++.+. | .......+ .++ .. ....+..+++....
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~~~~~~iv~~D--~f-~~~~~~~~~l~~~~~~~~l~~~~g~p 99 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GGEKSIGYASID--DF-YLTHEDQLKLNEQFKNNKLLQGRGLP 99 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GGGSCEEEEEGG--GG-BCCHHHHHHHHHHTTTCGGGSSSCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CCCceEEEeccc--cc-cCChHHHHHHhccccccchhhhccCc
Confidence 56789999999999999999999999763 2 00111111 222 11 12335566665431
Q ss_pred hhccHHHHHHHHhhCCCC-------hhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHH
Q 006275 516 EDWRIDDIKGLLGRCNFK-------ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578 (652)
Q Consensus 516 ~~~~~~~~~~~L~~~~l~-------~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~ 578 (652)
.......+.+.+..+.-. ......+...+||||+||+++|++...+|+|||+||||+++|+..
T Consensus 100 ~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 100 GTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp TSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred chhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 112334455555554321 001223346799999999999843333999999999999999864
No 258
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.11 E-value=7.6e-13 Score=126.52 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEECceeccc--------------c----eecccccccCCCCCCHHH
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGEHNVLP--------------N----YFEQNQAEALDLDKTVLE 509 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~--------------~----~~~~~~~~~~~~~~tv~e 509 (652)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++.. + ++.|+. .++. .+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~--~~~i----~~ 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVK--LAFI----RR 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSE--EEEE----EE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCc--EEEE----ec
Confidence 589999999999999999999999998 8999999876311 1 111110 0000 00
Q ss_pred HHHHhhhhccHHHHHHHHhh-C-CCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeE
Q 006275 510 TVAEAAEDWRIDDIKGLLGR-C-NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (652)
Q Consensus 510 ~~~~~~~~~~~~~~~~~L~~-~-~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lL 565 (652)
..... ...+.+.+.. + ++..... ..|||||+||++||||++.+|++.
T Consensus 77 ----~~~~~-~a~l~~~i~~~l~g~dt~i~----EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----VSEEE-GNDLDWIYERYLSDYDLVIT----EGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----CCHHH-HTCHHHHHHHHTTTCSEEEE----ESCGGGCCCEEEECSSGGGGGGGC
T ss_pred ----CChhh-hhCHHHHHHhhCCCCCEEEE----CCcCCCCCcEEEEEecccCCCccC
Confidence 00000 0022333333 2 3432222 249999999999999999998873
No 259
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.10 E-value=3e-13 Score=145.56 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=108.8
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHc------------CCCCCCcEEEECCCC-----------c---eEEEEeccCcc
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG------------QEEPDSGNVIKAKSN-----------M---KIAFLSQEFEV 172 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G------------~~~p~~G~i~~~~~~-----------~---~i~~v~Q~~~~ 172 (652)
.+++|..++|||+||+|||||+++|+| .+.|+.|.|.+.+.+ . ...++.+.|.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 556899999987521 1 23467788877
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccc
Q 006275 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (652)
Q Consensus 173 ~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (652)
....+..+++...|.. .+.. . +.++.-+...
T Consensus 96 ~~~~s~~e~L~~~fl~-------------~ir~------------------------~---------d~il~Vvd~~--- 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLS-------------HVRA------------------------V---------DAIYQVVRAF--- 126 (392)
T ss_dssp CCCCCSSSSSCHHHHH-------------HHTT------------------------C---------SEEEEEEECC---
T ss_pred ccCCcHHHHHHHHHHH-------------HHHH------------------------H---------HHHHHHHhcc---
Confidence 6665554433111100 0000 0 0111112211
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcCeE
Q 006275 253 GDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKI 326 (652)
Q Consensus 253 ~~~~~~~LSGGqkqRv~LAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~d~i 326 (652)
.+..+..+||+. +| +++++|||+.++|+...+...+.+ .+.|.|++ +|....+..+|+++
T Consensus 127 ~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i 192 (392)
T 1ni3_A 127 DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKV 192 (392)
T ss_dssp CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHH
T ss_pred ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHH
Confidence 134456677763 99 999999999999999987776654 33466653 99999999999999
Q ss_pred E-EEcCC-eEEEecCChH
Q 006275 327 V-ETEMG-VSRTYEGNYS 342 (652)
Q Consensus 327 i-~l~~G-~~~~~~g~~~ 342 (652)
. .|++| +. .+.|.++
T Consensus 193 ~~~L~~G~~~-~~~~~~~ 209 (392)
T 1ni3_A 193 YQYLTETKQP-IRKGDWS 209 (392)
T ss_dssp HHHHHTTCSC-GGGSCCC
T ss_pred HHHhccCCce-eecCCCC
Confidence 9 89999 65 3446543
No 260
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.08 E-value=1e-12 Score=137.51 Aligned_cols=133 Identities=14% Similarity=0.023 Sum_probs=88.3
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEE-------------------EcCeEEEEEcCCCCcHHHHHHHHhCCCC--CCeeEEE
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTI-------------------ERGEKTAIIGPNGCGKSTLLKLIMGLEK--PRGGEVL 482 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i-------------------~~Ge~~~i~G~NGsGKSTLl~~l~g~~~--p~~G~i~ 482 (652)
+|+++||++.|+ ++++++++.+ .+|+++||+||||||||||+++|+|++. |++|.|.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 488999999994 7899999988 9999999999999999999999999998 9999999
Q ss_pred E---Cceeccc------ceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHH
Q 006275 483 L---GEHNVLP------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLA 553 (652)
Q Consensus 483 ~---~g~~~~~------~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~ 553 (652)
+ +|..... +++ + ....+...++.+++....... . + ......+....+.+ +|+.
T Consensus 115 vi~~d~~~~~~~~~~~~~~v-q--~~~~~~~~~~~~~~~~~~~l~---------~--~--~~~i~~P~~~~~~~--~~~~ 176 (308)
T 1sq5_A 115 LITTDGFLHPNQVLKERGLM-K--KKGFPESYDMHRLVKFVSDLK---------S--G--VPNVTAPVYSHLIY--DVIP 176 (308)
T ss_dssp EEEGGGGBCCHHHHHHHTCT-T--CTTSGGGBCHHHHHHHHHHHT---------T--T--CSCEEECCEETTTT--EECT
T ss_pred EEecCCccCcHHHHHhCCEe-e--cCCCCCCccHHHHHHHHHHHh---------C--C--CCceeccccccccc--Cccc
Confidence 8 7754311 112 1 112234456666654432111 0 0 00012233233333 3333
Q ss_pred HHHHHccCCCeEEEeCCCCCCCH
Q 006275 554 FCKFMVKPSTLLVLDEPTNHLDI 576 (652)
Q Consensus 554 LAral~~~p~lLlLDEPt~~LD~ 576 (652)
.+.+.+.+++++|+|.|....+.
T Consensus 177 ~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 177 DGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp TCCEEEC-CCEEEEECTTTTCCG
T ss_pred ccceecCCCCEEEECchhhCCCc
Confidence 33355678999999999988873
No 261
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.07 E-value=7.4e-11 Score=110.06 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=30.6
Q ss_pred eeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCc
Q 006275 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (652)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G 152 (652)
+++++ +|+.++|+||||||||||+++|+|.+.+ +|
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 55555 8999999999999999999999998876 35
No 262
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.07 E-value=9.7e-11 Score=121.74 Aligned_cols=127 Identities=17% Similarity=0.105 Sum_probs=86.5
Q ss_pred eceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccH
Q 006275 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520 (652)
Q Consensus 441 ~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~ 520 (652)
++++|+ +|++++|+|+||+||||+++.|++.+.+..|+|.+.+.+...... .+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~--------------~~q---------- 144 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA--------------REQ---------- 144 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHH--------------HHH----------
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhH--------------HHH----------
Confidence 566777 899999999999999999999999999888999887654321000 000
Q ss_pred HHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC-CCCCCHHHHHHHHHHHHhcC--ceEEEEe
Q 006275 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP-TNHLDIPSKEMLEEAISEYK--GTVITVS 597 (652)
Q Consensus 521 ~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP-t~~LD~~~~~~l~~~l~~~~--~tvi~vs 597 (652)
...+.+..++.- .... ...+..+.+|.+|+++...+++++|+||| +.++|......+.++..... .+++++.
T Consensus 145 --l~~~~~~~~l~~--~~~~-~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 145 --LRLLGEKVGVPV--LEVM-DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp --HHHHHHHHTCCE--EECC-TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred --HHHhcccCCeEE--EEcC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 011122233321 1000 01234456788999998899999999999 99999988888877776442 3454444
Q ss_pred c
Q 006275 598 H 598 (652)
Q Consensus 598 H 598 (652)
.
T Consensus 220 ~ 220 (295)
T 1ls1_A 220 A 220 (295)
T ss_dssp G
T ss_pred C
Confidence 3
No 263
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.02 E-value=6.3e-13 Score=140.74 Aligned_cols=168 Identities=20% Similarity=0.258 Sum_probs=106.2
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECC-------CEEEEECCCCccHHHHHHHHHcCC----CCCCcEEEECCC-------
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKG-------EKVGLVGVNGAGKTTQLRIIAGQE----EPDSGNVIKAKS------- 159 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~G-------e~~~lvG~NGsGKSTLl~~L~G~~----~p~~G~i~~~~~------- 159 (652)
++.++++..|+...+++++++.|++| +.++|+||||+|||||+++|+|++ .+.+|.+...+.
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 55567777788878999999999887 899999999999999999999998 666776654321
Q ss_pred ---CceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHH
Q 006275 160 ---NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (652)
Q Consensus 160 ---~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (652)
...|.|++|...+.. ++.+++...+ +.... +.+ +......
T Consensus 99 ~~~~~~v~~iDE~~~l~~--~~~e~L~~~~-----------------~~~~~--~i~----------------~~~~~~~ 141 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK--AVEELLYSAI-----------------EDFQI--DIM----------------IGKGPSA 141 (334)
T ss_dssp HCCTTCEEEEETGGGCCH--HHHHHHHHHH-----------------HTSCC--CC------------------------
T ss_pred HccCCCEEEEcchhhcCH--HHHHHHHHHH-----------------Hhccc--cee----------------eccCccc
Confidence 236899988765432 5555543111 00000 000 0000111
Q ss_pred HHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEE
Q 006275 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (652)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIiv 312 (652)
..+...+..+++. .....+..||+|++||+.++ .+||+.+.+.+.++|++ .+ +
T Consensus 142 ~~i~~~l~~~~li--~at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~ 198 (334)
T 1in4_A 142 KSIRIDIQPFTLV--GATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----V 198 (334)
T ss_dssp -------CCCEEE--EEESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----C
T ss_pred ccccccCCCeEEE--EecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----C
Confidence 2333445555553 24566789999999998655 67787777777766642 33 3
Q ss_pred ecCHHHHHhhcCe
Q 006275 313 SHDRAFLDQLCTK 325 (652)
Q Consensus 313 sHd~~~l~~~~d~ 325 (652)
+|+.+.+..+|++
T Consensus 199 ~~~~~~~~~ia~~ 211 (334)
T 1in4_A 199 EIEDAAAEMIAKR 211 (334)
T ss_dssp CBCHHHHHHHHHT
T ss_pred CcCHHHHHHHHHh
Confidence 6888887777664
No 264
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.02 E-value=5.7e-13 Score=143.35 Aligned_cols=158 Identities=15% Similarity=0.141 Sum_probs=101.3
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhC------------CCCCCeeEEEECceecc-------c-------ceecccccc
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMG------------LEKPRGGEVLLGEHNVL-------P-------NYFEQNQAE 499 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g------------~~~p~~G~i~~~g~~~~-------~-------~~~~~~~~~ 499 (652)
.+.+|.++||+|+||+|||||+++|+| ...|+.|.+.+.|..+. + ..+.+ .+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD--~p 93 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFD--IA 93 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEEC--TG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEe--cc
Confidence 346899999999999999999999999 66799999999873220 0 01111 11
Q ss_pred cCCCCCCHHHHHH--HhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCC--CeEEEeCCCCCCC
Q 006275 500 ALDLDKTVLETVA--EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS--TLLVLDEPTNHLD 575 (652)
Q Consensus 500 ~~~~~~tv~e~~~--~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p--~lLlLDEPt~~LD 575 (652)
.+....+..+++. +..... .+..++..++. ..+..+..+|++. +| +++++|||+.++|
T Consensus 94 Gl~~~~s~~e~L~~~fl~~ir---~~d~il~Vvd~---~~d~~i~~v~~~~------------dP~~di~ildeel~~~D 155 (392)
T 1ni3_A 94 GLTKGASTGVGLGNAFLSHVR---AVDAIYQVVRA---FDDAEIIHVEGDV------------DPIRDLSIIVDELLIKD 155 (392)
T ss_dssp GGCCCCCSSSSSCHHHHHHHT---TCSEEEEEEEC---CCTTCSSCCSSSS------------CHHHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHH---HHHHHHHHHhc---cccceeeeecccc------------CcchhhhhchhhhHHHH
Confidence 2222222211110 000000 00001111111 1134455566653 89 9999999999999
Q ss_pred HHHHHHHHHHHHhc-C---ceEEEEecCHHHHHhhccEEE-EEeCC-EEEeecCChh
Q 006275 576 IPSKEMLEEAISEY-K---GTVITVSHDRYFVKQIVNRVV-EVKGS-NLQDYAGDYN 626 (652)
Q Consensus 576 ~~~~~~l~~~l~~~-~---~tvi~vsHd~~~i~~~~drvi-~l~~g-~i~~~~g~~~ 626 (652)
+...+...+.+... . .|+ ++|+...+..+|+++. +|++| ++.. .|.++
T Consensus 156 ~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~-~~~~~ 209 (392)
T 1ni3_A 156 AEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIR-KGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGG-GSCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceee-cCCCC
Confidence 99999888888765 3 354 3999999999999999 89999 7753 35444
No 265
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.02 E-value=8.2e-11 Score=122.76 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=72.8
Q ss_pred EEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHH
Q 006275 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (652)
Q Consensus 444 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~ 523 (652)
++...+|++++|+|+|||||||+++.|++.+.+.+|+|.+.+.+... . ... +++
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r------~--------~a~------------eqL 151 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR------A--------AAI------------EQL 151 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC------H--------HHH------------HHH
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc------H--------HHH------------HHH
Confidence 44567899999999999999999999999999888888876654210 0 001 112
Q ss_pred HHHHhhCCCChhhhccCcCCCCHHHHHHH---HHHHHHccCCCeEEEeCCCC
Q 006275 524 KGLLGRCNFKADMLDRKVSLLSGGEKARL---AFCKFMVKPSTLLVLDEPTN 572 (652)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSgGqrqrv---~LAral~~~p~lLlLDEPt~ 572 (652)
..++++.++. .+..+|+|+.+++ +|++++..+|+++|+|||..
T Consensus 152 ~~~~~~~gl~------~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 152 KIWGERVGAT------VISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHTCE------EECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHcCCc------EEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 3344455552 1335789999999 99999999999999999975
No 266
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.02 E-value=4.3e-10 Score=116.87 Aligned_cols=135 Identities=14% Similarity=0.216 Sum_probs=87.7
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHH
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~ 200 (652)
++|++++|+|+||+||||++..|++.+.+.+|. ++.++.+++. ..+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~--------~V~lv~~D~~---r~~a~eqL~~---------------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK--------KIAFITTDTY---RIAAVEQLKT---------------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC--------CEEEEECCCS---STTHHHHHHH----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--------EEEEEecCcc---cchHHHHHHH----------------
Confidence 479999999999999999999999999877772 4677777752 2333333210
Q ss_pred HHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCe
Q 006275 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280 (652)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~LAraL~~~p~i 280 (652)
..+..|++.. ...+ +...+.+|++ +.+|++
T Consensus 156 -----------------------------------------~~~~~gl~~~------~~~~-~~~l~~al~~--~~~~dl 185 (296)
T 2px0_A 156 -----------------------------------------YAELLQAPLE------VCYT-KEEFQQAKEL--FSEYDH 185 (296)
T ss_dssp -----------------------------------------HHTTTTCCCC------BCSS-HHHHHHHHHH--GGGSSE
T ss_pred -----------------------------------------HHHhcCCCeE------ecCC-HHHHHHHHHH--hcCCCE
Confidence 0111233210 0112 3445666765 499999
Q ss_pred EEEeCCCCCCCHHHHHHHH---HHHcc--CCCeEEEE--ecCHHHHHhhcCeEEEEcCCeE
Q 006275 281 LLLDEPTNHLDLDTIEWLE---GYLGK--QDVPMVII--SHDRAFLDQLCTKIVETEMGVS 334 (652)
Q Consensus 281 LLLDEPts~LD~~~~~~l~---~~L~~--~g~tvIiv--sHd~~~l~~~~d~ii~l~~G~~ 334 (652)
+|+| |+|+|+.....+. .++.. ...+++++ +|....+.++|+++..+..+++
T Consensus 186 vIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~gi 244 (296)
T 2px0_A 186 VFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQY 244 (296)
T ss_dssp EEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEE
T ss_pred EEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEE
Confidence 9999 9999986654443 34431 12234444 9999999898988766665555
No 267
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.01 E-value=8.7e-14 Score=143.31 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=40.7
Q ss_pred CeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC
Q 006275 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (652)
Q Consensus 109 ~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~ 159 (652)
...+++++++.+++| ++|+||||||||||+++|+|+..+ |.|.++|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~ 78 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGP 78 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETT
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcH
Confidence 445789999999999 999999999999999999999876 67776643
No 268
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.00 E-value=3.2e-13 Score=143.04 Aligned_cols=162 Identities=22% Similarity=0.282 Sum_probs=105.4
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcC-------eEEEEEcCCCCcHHHHHHHHhCCC----CCCeeEEEECceecc----
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERG-------EKTAIIGPNGCGKSTLLKLIMGLE----KPRGGEVLLGEHNVL---- 489 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~G-------e~~~i~G~NGsGKSTLl~~l~g~~----~p~~G~i~~~g~~~~---- 489 (652)
++.++++..|+...+++++++.|.+| +.++|+||||+|||||+++|+|.+ .|.+|.+...+.++.
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 45567888888888999999999887 899999999999999999999998 677777765554331
Q ss_pred ------cceecccccccCCCCCCHHHHHHHhhhhc----------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHH
Q 006275 490 ------PNYFEQNQAEALDLDKTVLETVAEAAEDW----------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLA 553 (652)
Q Consensus 490 ------~~~~~~~~~~~~~~~~tv~e~~~~~~~~~----------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~ 553 (652)
..++.+. ..+. .++.+++....... ....+...+..+++. . ..+.+..||+|+|||++
T Consensus 99 ~~~~~~v~~iDE~--~~l~--~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li-~-at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 99 SLERGDVLFIDEI--HRLN--KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV-G-ATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp HCCTTCEEEEETG--GGCC--HHHHHHHHHHHHTSCCCC---------------CCCEEE-E-EESCGGGSCHHHHTTCS
T ss_pred HccCCCEEEEcch--hhcC--HHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE-E-ecCCcccCCHHHHHhcC
Confidence 0122221 1222 25666664332211 111233345555553 2 56778899999999986
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccE
Q 006275 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNR 609 (652)
Q Consensus 554 LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~dr 609 (652)
++ .+||+.+...+.++|++.... .-++|+.+.+..++++
T Consensus 173 l~----------------~~Ld~~~~~~l~~iL~~~~~~-~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 173 II----------------LELDFYTVKELKEIIKRAASL-MDVEIEDAAAEMIAKR 211 (334)
T ss_dssp EE----------------EECCCCCHHHHHHHHHHHHHH-TTCCBCHHHHHHHHHT
T ss_pred ce----------------eeCCCCCHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHh
Confidence 54 788888888888888654210 1136787777666653
No 269
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.00 E-value=4.9e-13 Score=137.67 Aligned_cols=138 Identities=14% Similarity=0.182 Sum_probs=89.4
Q ss_pred CeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccce----------ecccccccCCCCC
Q 006275 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNY----------FEQNQAEALDLDK 505 (652)
Q Consensus 436 ~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~----------~~~~~~~~~~~~~ 505 (652)
...+++++++++++| ++|+||||||||||+++|+|...+ |.|.++|.++...+ +.+.. ....+..
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a-~~~~p~i 106 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRA-KNSAPCV 106 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHH-HHTCSEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHH-HhcCCCe
Confidence 445789999999999 999999999999999999999887 78888886653221 11110 0111222
Q ss_pred CHHHHHHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC------------C
Q 006275 506 TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN------------H 573 (652)
Q Consensus 506 tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~------------~ 573 (652)
++.|++........... .+......++.+.+|||||+||+.|++|+..+|++| |||+. -
T Consensus 107 ~~~Deid~~~~~r~~~~-------~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~ 177 (274)
T 2x8a_A 107 IFFDEVDALCPRRSDRE-------TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGL 177 (274)
T ss_dssp EEEETCTTTCC----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCS
T ss_pred EeeehhhhhhcccCCCc-------chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCC
Confidence 22222221111000000 011123456667789999999999999999999985 99964 3
Q ss_pred CCHHHHHHHHHHHH
Q 006275 574 LDIPSKEMLEEAIS 587 (652)
Q Consensus 574 LD~~~~~~l~~~l~ 587 (652)
-|...+..+.+.+.
T Consensus 178 P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 178 PPPADRLAILKTIT 191 (274)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHH
Confidence 46677777766654
No 270
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.99 E-value=1.5e-10 Score=135.99 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=29.1
Q ss_pred eEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 443 isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.++.+.+|..+.|+||+|+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 46678899999999999999999999999876
No 271
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.97 E-value=5e-11 Score=124.35 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=73.7
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE---Cceecc----------cceecccccc---cCCCCCCHHHHH
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVL----------PNYFEQNQAE---ALDLDKTVLETV 511 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~---~g~~~~----------~~~~~~~~~~---~~~~~~tv~e~~ 511 (652)
..|++++|+||||||||||+++|+ +.+|++|+|.+ +|.++. .+++.|.+.. .+++.+|+ +++
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l 240 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REV 240 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGG
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHH
Confidence 468999999999999999999999 99999999998 776542 2344443211 11246777 776
Q ss_pred H--Hh--------hhh-----ccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHH
Q 006275 512 A--EA--------AED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (652)
Q Consensus 512 ~--~~--------~~~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAr 556 (652)
. +. ... .....+.++++.+++.....++++..|||.+++++.|||
T Consensus 241 ~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 241 RNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 21 000 112358899999999755778999999998888899986
No 272
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.97 E-value=4.6e-10 Score=116.64 Aligned_cols=130 Identities=18% Similarity=0.134 Sum_probs=87.9
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCC
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~T 177 (652)
+.++++++.|+... ++++|+ +|++++|+|+||+||||++..|+|.+.+..|+|.+.+. ++. ...+
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~---------d~~--~~~~ 141 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA---------DTQ--RPAA 141 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC---------CSS--CHHH
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC---------Ccc--cHhH
Confidence 45677888886543 778888 99999999999999999999999999888887766432 221 0000
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCC
Q 006275 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (652)
Q Consensus 178 v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~ 257 (652)
+ +.+ . .+.+..|++.....
T Consensus 142 ~-~ql--------------~-------------------------------------------~~~~~~~l~~~~~~--- 160 (295)
T 1ls1_A 142 R-EQL--------------R-------------------------------------------LLGEKVGVPVLEVM--- 160 (295)
T ss_dssp H-HHH--------------H-------------------------------------------HHHHHHTCCEEECC---
T ss_pred H-HHH--------------H-------------------------------------------HhcccCCeEEEEcC---
Confidence 0 000 0 00111233210000
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCC-CCCCCHHHHHHHHHHHc
Q 006275 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEP-TNHLDLDTIEWLEGYLG 303 (652)
Q Consensus 258 ~~LSGGqkqRv~LAraL~~~p~iLLLDEP-ts~LD~~~~~~l~~~L~ 303 (652)
......+.+|.+|+++...++|++|+||| +.++|......+..+.+
T Consensus 161 ~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~ 207 (295)
T 1ls1_A 161 DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE 207 (295)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhh
Confidence 11234456789999998899999999999 99999988888766653
No 273
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.94 E-value=8.4e-10 Score=114.69 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=86.9
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHH
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL 526 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~ 526 (652)
.+|++++|+|+|||||||+++.|++.+.+.+| +|.+-+.+. ...+..+.+. .+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~--------------~r~~a~eqL~------------~~ 156 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT--------------YRIAAVEQLK------------TY 156 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC--------------SSTTHHHHHH------------HH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc--------------ccchHHHHHH------------HH
Confidence 47999999999999999999999999988778 555433221 0122333322 22
Q ss_pred HhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----C-ceEEEE--ecC
Q 006275 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----K-GTVITV--SHD 599 (652)
Q Consensus 527 L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~-~tvi~v--sHd 599 (652)
.+..|+... . ..+ +..-+.+|++ +.+|+++|+| |+|+|......+.++..-. . .+++++ +|+
T Consensus 157 ~~~~gl~~~-~-----~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 157 AELLQAPLE-V-----CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp HTTTTCCCC-B-----CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred HHhcCCCeE-e-----cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 233343210 0 122 2344566665 4899999999 9999988776666544322 1 244555 999
Q ss_pred HHHHHhhccEEEEEeCCEEE
Q 006275 600 RYFVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 600 ~~~i~~~~drvi~l~~g~i~ 619 (652)
.+.+.++++++..+..+.++
T Consensus 226 ~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 226 YEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp HHHHHHHTTTTSSSCCCEEE
T ss_pred HHHHHHHHHHHhcCCCCEEE
Confidence 99998888876555555554
No 274
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.93 E-value=2.7e-10 Score=118.81 Aligned_cols=42 Identities=29% Similarity=0.266 Sum_probs=36.5
Q ss_pred eeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 116 vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
+++..++|++++|+|+|||||||++..|++.+.+..|+|.+.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 456678899999999999999999999999998877776653
No 275
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.92 E-value=2.9e-10 Score=125.15 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=47.1
Q ss_pred eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee
Q 006275 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (652)
Q Consensus 437 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (652)
..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 4579999999999 9999999999999999999999999999999998754
No 276
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.91 E-value=6.6e-11 Score=123.40 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=39.8
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE---CCCCc----------eEEEEeccCcc
Q 006275 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM----------KIAFLSQEFEV 172 (652)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~---~~~~~----------~i~~v~Q~~~~ 172 (652)
|++.+|++++|+||||||||||+++|+|+.+|++|+|.+ .|.+. .+||++|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~ 231 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 231 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCC
Confidence 456679999999999999999999999999999999998 55321 37999999854
No 277
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.91 E-value=3.4e-10 Score=124.59 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=60.3
Q ss_pred hccCcCCCCHHHHHHH--HHHHHHcc---------------CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecC
Q 006275 537 LDRKVSLLSGGEKARL--AFCKFMVK---------------PSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHD 599 (652)
Q Consensus 537 ~~~~~~~LSgGqrqrv--~LAral~~---------------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd 599 (652)
..+....+||||+|.. +|+.++++ .-.+++|||+ +-+|.+..+.+.+++++++--+|+++=+
T Consensus 373 ~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~ 451 (483)
T 3euj_A 373 MRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE 451 (483)
T ss_dssp EECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc
Confidence 4556778999999974 33333332 2257999999 9999999999999999999989999988
Q ss_pred HHHHHhhccEEEEEe
Q 006275 600 RYFVKQIVNRVVEVK 614 (652)
Q Consensus 600 ~~~i~~~~drvi~l~ 614 (652)
.+..++|.++.+.
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 6777789888875
No 278
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.91 E-value=5.8e-11 Score=123.74 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=43.4
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE---CCCCc-------e--EEEEeccCccCC----CCCHHHH
Q 006275 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM-------K--IAFLSQEFEVSM----SRTVREE 181 (652)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~---~~~~~-------~--i~~v~Q~~~~~~----~~Tv~e~ 181 (652)
+++.+|++++|+||||+|||||+|+|+|+.+|..|+|.+ .|... . ++|++|+|.+.. ..|+ ||
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 566789999999999999999999999999999999987 44321 1 699999997654 5688 88
Q ss_pred HHHhh
Q 006275 182 FMSAF 186 (652)
Q Consensus 182 i~~~~ 186 (652)
+...|
T Consensus 247 l~~~f 251 (307)
T 1t9h_A 247 LGYTF 251 (307)
T ss_dssp HGGGS
T ss_pred HHHHH
Confidence 75434
No 279
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.89 E-value=9.7e-09 Score=102.54 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=41.7
Q ss_pred cCCCeEEEeCCCCCC--CHHHH-H---HHHHHHccCCCeEEEEecCHHH--------HHhhcCeEEEEcC
Q 006275 276 QDPDLLLLDEPTNHL--DLDTI-E---WLEGYLGKQDVPMVIISHDRAF--------LDQLCTKIVETEM 331 (652)
Q Consensus 276 ~~p~iLLLDEPts~L--D~~~~-~---~l~~~L~~~g~tvIivsHd~~~--------l~~~~d~ii~l~~ 331 (652)
.+|+++++|+|++.+ |+... + .+.+.+++.|+|||+++|.... +.++||.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 54322 2 2334456789999999998776 5678999999874
No 280
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.88 E-value=1.4e-08 Score=101.39 Aligned_cols=56 Identities=18% Similarity=0.129 Sum_probs=40.4
Q ss_pred cCCCeEEEeCCCCCC--CHHHHH-H---HHHHHHhcCceEEEEecCHHH--------HHhhccEEEEEeC
Q 006275 560 KPSTLLVLDEPTNHL--DIPSKE-M---LEEAISEYKGTVITVSHDRYF--------VKQIVNRVVEVKG 615 (652)
Q Consensus 560 ~~p~lLlLDEPt~~L--D~~~~~-~---l~~~l~~~~~tvi~vsHd~~~--------i~~~~drvi~l~~ 615 (652)
.+|+++++|+|+..+ |..... . +.+.+++.+.|||+++|.... +.++||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 553332 2 333334567799999998876 5678999999963
No 281
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.85 E-value=3e-10 Score=118.37 Aligned_cols=99 Identities=17% Similarity=0.106 Sum_probs=64.5
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE---Cceecc----------cceeccccc--------------c
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVL----------PNYFEQNQA--------------E 499 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~---~g~~~~----------~~~~~~~~~--------------~ 499 (652)
+..|++++|+||||||||||+++|+|+.+|++|+|.+ +|.++. .+++.|.+. .
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~ 245 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELK 245 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHG
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHH
Confidence 4469999999999999999999999999999999998 776542 123333321 2
Q ss_pred cCCCCCCHHHHHHHhhh---hccHHHHHHHHhhCCCChhhhccCcCCCCH
Q 006275 500 ALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDRKVSLLSG 546 (652)
Q Consensus 500 ~~~~~~tv~e~~~~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSg 546 (652)
.+++.+++ +|+.+... ......+.++|+.+++..+..++++..||+
T Consensus 246 ~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 246 HYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35677788 77765321 112345889999999975677888888885
No 282
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.74 E-value=4.3e-10 Score=124.64 Aligned_cols=167 Identities=11% Similarity=0.039 Sum_probs=97.3
Q ss_pred ceEEEEEcCeEEEEEcCCCCcHHHHHHHHhC--CCCCCeeEEEECceecccceecccccccCCCCC--CHHHHHHHh---
Q 006275 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMG--LEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDK--TVLETVAEA--- 514 (652)
Q Consensus 442 ~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g--~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~--tv~e~~~~~--- 514 (652)
.+++++.++.++.|.|.+||||||+++.|.. +..++.|.+.+...+....-+... ...++. +|.++...+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~---~~lPhl~~~Vvtd~~~a~~~ 235 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVY---EGIPHLLTEVVTDMKDAANA 235 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGG---TTCTTBSSSCBCSHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhh---ccCCcccceeecCHHHHHHH
Confidence 4678888999999999999999999999876 455555666654444322111100 001111 111111111
Q ss_pred hh-h-ccHHHHHHHHhhCCCChhhhc---cCcCCCCHHHHHHH----------HHHHHHccCCC-eEEEeCCCCCCCHHH
Q 006275 515 AE-D-WRIDDIKGLLGRCNFKADMLD---RKVSLLSGGEKARL----------AFCKFMVKPST-LLVLDEPTNHLDIPS 578 (652)
Q Consensus 515 ~~-~-~~~~~~~~~L~~~~l~~~~~~---~~~~~LSgGqrqrv----------~LAral~~~p~-lLlLDEPt~~LD~~~ 578 (652)
.. . ...++-.+.+...|+. +..+ +....+|+||+|+. ++|+++...|. ++++||++..+|...
T Consensus 236 L~~~~~EmerR~~ll~~~Gv~-~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~ 314 (512)
T 2ius_A 236 LRWCVNEMERRYKLMSALGVR-NLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVG 314 (512)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCc-cHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhh
Confidence 10 0 0112223567777763 2221 22235788887752 35667778898 899999999988433
Q ss_pred HHHHHHHH----H---hcCceEEEEecCHH-------HHHhhccEEEEE
Q 006275 579 KEMLEEAI----S---EYKGTVITVSHDRY-------FVKQIVNRVVEV 613 (652)
Q Consensus 579 ~~~l~~~l----~---~~~~tvi~vsHd~~-------~i~~~~drvi~l 613 (652)
..+.+.| + .++.++|++||+.. ...++.+||.+-
T Consensus 315 -~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 315 -KKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp -HHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred -HHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 2233332 2 23559999999987 455666777653
No 283
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.73 E-value=2.5e-10 Score=126.51 Aligned_cols=173 Identities=14% Similarity=0.167 Sum_probs=94.4
Q ss_pred eeeEEEECCCEEEEECCCCccHHHHHHHHHc--CCCCCCcEEEECCCCceEEEEeccCccCCCC--CHHHHHHHhhHHHH
Q 006275 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR--TVREEFMSAFKEEM 190 (652)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G--~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~--Tv~e~i~~~~~~~~ 190 (652)
.+++.+.++.++.|.|++||||||+++.|.. ++.++.|++.+...+.+. .-.+.....+.. +|.++...+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~el~~~~~lPhl~~~Vvtd~~~a~---- 233 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-LELSVYEGIPHLLTEVVTDMKDAA---- 233 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-SGGGGGTTCTTBSSSCBCSHHHHH----
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-hhhhhhccCCcccceeecCHHHHH----
Confidence 4678888999999999999999999999876 455555665442211110 001111111111 2222211000
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCccc--ccCCCCCCChHHHHHH
Q 006275 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD--GDRLVASFSSGWQMRM 268 (652)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~--~~~~~~~LSGGqkqRv 268 (652)
..+..+ ..+++++. +++...|+.+-. ..+....+||||+|+.
T Consensus 234 ---~~L~~~--------------------------------~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~ 277 (512)
T 2ius_A 234 ---NALRWC--------------------------------VNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPD 277 (512)
T ss_dssp ---HHHHHH--------------------------------HHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBC
T ss_pred ---HHHHHH--------------------------------HHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccc
Confidence 000000 01122332 445555553211 0111235788887752
Q ss_pred ----------HHHHHHccCCC-eEEEeCCCCCCCHHH---HHHHHHHH---ccCCCeEEEEecCHH-------HHHhhcC
Q 006275 269 ----------SLGKILLQDPD-LLLLDEPTNHLDLDT---IEWLEGYL---GKQDVPMVIISHDRA-------FLDQLCT 324 (652)
Q Consensus 269 ----------~LAraL~~~p~-iLLLDEPts~LD~~~---~~~l~~~L---~~~g~tvIivsHd~~-------~l~~~~d 324 (652)
++|+++...|. ++++||++..+|... .+.+..+. ++.|.++|++||++. ...++.+
T Consensus 278 ~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~ 357 (512)
T 2ius_A 278 PYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPT 357 (512)
T ss_dssp TTC---------CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCE
T ss_pred cccccccchhccccccccCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCC
Confidence 35667778898 899999999988432 12222222 346899999999987 4556666
Q ss_pred eEEE
Q 006275 325 KIVE 328 (652)
Q Consensus 325 ~ii~ 328 (652)
||..
T Consensus 358 RI~l 361 (512)
T 2ius_A 358 RIAF 361 (512)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7653
No 284
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.70 E-value=1.9e-09 Score=122.96 Aligned_cols=180 Identities=14% Similarity=0.155 Sum_probs=101.2
Q ss_pred EeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCC-cEEEECCC-----CceEEEEeccCccCC
Q 006275 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-GNVIKAKS-----NMKIAFLSQEFEVSM 174 (652)
Q Consensus 101 ~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~-G~i~~~~~-----~~~i~~v~Q~~~~~~ 174 (652)
++++.-|+...+++++++.+.+|+.++|+||||+|||||+++|+|++++.. |.+.+.+. ...++|+++...
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~--- 114 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQG--- 114 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHH---
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchH---
Confidence 344555677789999999999999999999999999999999999999887 66666432 235788877521
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCCh---hcHHHHHHHHhhhcCCCcc
Q 006275 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL---DTLDAKVSKLMPELGFTAD 251 (652)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~ll~~lgl~~~ 251 (652)
+.+.......... ..+.....+... .......+.- ........ .........++..+..
T Consensus 115 -----~~~~e~~~~~~~~--~~~~r~~~~~~~--~~~~~~nl~v------~~~~~~~~~~v~~~~~~~~~L~G~~~~--- 176 (604)
T 3k1j_A 115 -----RRIVEKYREKAKS--QESVKSSNMRLK--STVLVPKLLV------DNCGRTKAPFIDATGAHAGALLGDVRH--- 176 (604)
T ss_dssp -----HHHHHHHHHHHHH--HTCC-------------CCCEEEE------CCTTCSSCCEEECTTCCHHHHHCEECC---
T ss_pred -----HHHHHHHHHhhcc--chhhhhhccccc--ccccccceee------ccccCCCCCEEEcCCCCHHhcCceEEe---
Confidence 1111100000000 000000000000 0000000000 00000000 0000011122222211
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q 006275 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (652)
Q Consensus 252 ~~~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (652)
.......+|+|++|++..++....++.+|+|||.-. |++.....|.+.|.
T Consensus 177 -~~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 177 -DPFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp -CCC----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred -chhhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 112235699999999999999999999999999988 89999999988885
No 285
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.69 E-value=5.3e-09 Score=115.20 Aligned_cols=175 Identities=10% Similarity=0.075 Sum_probs=99.2
Q ss_pred eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEECceecccceecccc-cccCCCCCCHHHHHHHh-
Q 006275 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVLLGEHNVLPNYFEQNQ-AEALDLDKTVLETVAEA- 514 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G-~i~~~g~~~~~~~~~~~~-~~~~~~~~tv~e~~~~~- 514 (652)
+.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .|.+.+.......+.... .... .... +.+..+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~--~~~~-~~l~~g~ 267 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEG--NINA-QNLRTGK 267 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHH--TCCH-HHHHTSC
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHc--CCCH-HHHhcCC
Confidence 457777767999999999999999999999999987765444 444322211110000000 0000 0000 011100
Q ss_pred hhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHc--cCCCeEEEeCCCCCCCHH--------HHHHHHH
Q 006275 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV--KPSTLLVLDEPTNHLDIP--------SKEMLEE 584 (652)
Q Consensus 515 ~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~--~~p~lLlLDEPt~~LD~~--------~~~~l~~ 584 (652)
........+...++.++.. ...-.....+|.+|.+ ..++.+. .+|+++|+|+++...+.. ....+.+
T Consensus 268 l~~~~~~~~~~a~~~l~~~-~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~ 344 (454)
T 2r6a_A 268 LTPEDWGKLTMAMGSLSNA-GIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISR 344 (454)
T ss_dssp CCHHHHHHHHHHHHHHHSS-CEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcC-CEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHH
Confidence 0000011222333333221 1222234579999987 4556665 689999999999987532 1233333
Q ss_pred HHH----hcCceEEEEec---------C--HH--------HHHhhccEEEEEeCCEE
Q 006275 585 AIS----EYKGTVITVSH---------D--RY--------FVKQIVNRVVEVKGSNL 618 (652)
Q Consensus 585 ~l~----~~~~tvi~vsH---------d--~~--------~i~~~~drvi~l~~g~i 618 (652)
.|+ +++.+||+++| | .. .+.+.||.|++|+.+..
T Consensus 345 ~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 345 SLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 343 45679999999 3 22 57788999999986543
No 286
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.68 E-value=9.8e-10 Score=106.94 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=36.8
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC----------CceEEEEeccCcc
Q 006275 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----------NMKIAFLSQEFEV 172 (652)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~----------~~~i~~v~Q~~~~ 172 (652)
|+++++|++++|+||||||||||+++|+|+++ .+.+.+. ...++|++|++..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETR 62 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHH
Confidence 57788999999999999999999999999974 2333321 1246788887543
No 287
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.67 E-value=1.8e-08 Score=106.99 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=47.6
Q ss_pred HHHHHHHHHccC--CCeEEEeCCCCCC----------CH----HH---HHHHHH---HHccCCCeEEEEecCHH------
Q 006275 266 MRMSLGKILLQD--PDLLLLDEPTNHL----------DL----DT---IEWLEG---YLGKQDVPMVIISHDRA------ 317 (652)
Q Consensus 266 qRv~LAraL~~~--p~iLLLDEPts~L----------D~----~~---~~~l~~---~L~~~g~tvIivsHd~~------ 317 (652)
+-+.++++++.+ |+++++|+|++.+ |. .. .+.+.+ ++++.++|||+++|...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678878754 9999999999998 32 11 222332 34667999999999654
Q ss_pred ----------HHHhhcCeEEEEcCCeE
Q 006275 318 ----------FLDQLCTKIVETEMGVS 334 (652)
Q Consensus 318 ----------~l~~~~d~ii~l~~G~~ 334 (652)
.+..+||.++.++.+..
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEeee
Confidence 25678998888876654
No 288
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.67 E-value=1.2e-08 Score=98.49 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=32.4
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q 006275 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588 (652)
Q Consensus 551 rv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 588 (652)
.+.+|++++.+|+++++| ||++|..+...+.+.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999888754
No 289
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.67 E-value=5.2e-10 Score=111.57 Aligned_cols=54 Identities=24% Similarity=0.275 Sum_probs=42.8
Q ss_pred ceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC
Q 006275 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (652)
Q Consensus 97 ~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~ 158 (652)
.|+++|+...|+. +|++.+ ++++|+||||||||||+++|+|++.|++|.|.++|
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 4788888766532 466666 89999999999999999999999999999988765
No 290
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.64 E-value=1.8e-09 Score=112.52 Aligned_cols=102 Identities=16% Similarity=0.028 Sum_probs=54.4
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE---Cceecc---------cceecccccccCC--CCCCHHHHHH
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVL---------PNYFEQNQAEALD--LDKTVLETVA 512 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~---~g~~~~---------~~~~~~~~~~~~~--~~~tv~e~~~ 512 (652)
+.+|++++|+||||+|||||+++|+|+.+|..|.|.+ .|..+. .+++.|.+....+ ..+++ +++.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHG
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHH
Confidence 3479999999999999999999999999999999988 665432 2344443221111 15678 8873
Q ss_pred Hhhh-----------------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHH
Q 006275 513 EAAE-----------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKA 550 (652)
Q Consensus 513 ~~~~-----------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrq 550 (652)
.... ......+.++++.+++... ..+....|+.|++|
T Consensus 249 ~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~-r~~~y~~lls~~~~ 302 (307)
T 1t9h_A 249 YTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY-RYDHYVEFMTEIKD 302 (307)
T ss_dssp GGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH-HHHHHHHHHHHHhh
Confidence 2111 0112357889999998643 33444556667776
No 291
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.64 E-value=1.8e-11 Score=125.97 Aligned_cols=130 Identities=14% Similarity=0.184 Sum_probs=84.6
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccc----------eec
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN----------YFE 494 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~----------~~~ 494 (652)
.+++++.+.|+...+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++... ++.
T Consensus 50 ~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 50 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 125 (278)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHH
Confidence 45567777787778899999999999 99999999999999999999985 68888877554211 111
Q ss_pred ccccccCCCCCCHHHHHHHhhhhcc------HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEe
Q 006275 495 QNQAEALDLDKTVLETVAEAAEDWR------IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~~~~------~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLD 568 (652)
+.. ....+...+.|++........ ..+.... .++.+.+|||||+||+.+++|+..+|++ ||
T Consensus 126 ~~~-~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~----------~~~ll~~lsgg~~~~~~i~~a~t~~p~~--ld 192 (278)
T 1iy2_A 126 ETA-KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT----------LNQLLVEMDGFEKDTAIVVMAATNRPDI--LD 192 (278)
T ss_dssp HHH-HTSCSEEEEEETHHHHHCC--------CHHHHHH----------HHHHHHHHTTCCTTCCEEEEEEESCTTS--SC
T ss_pred HHH-HhcCCcEEehhhhHhhhcccccccCCcchHHHHH----------HHHHHHHHhCCCCCCCEEEEEecCCchh--CC
Confidence 111 011223344444422111000 0111111 1223346999999999999999999987 67
Q ss_pred CCC
Q 006275 569 EPT 571 (652)
Q Consensus 569 EPt 571 (652)
++.
T Consensus 193 ~~l 195 (278)
T 1iy2_A 193 PAL 195 (278)
T ss_dssp HHH
T ss_pred HhH
Confidence 653
No 292
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.62 E-value=8.1e-09 Score=102.90 Aligned_cols=40 Identities=20% Similarity=0.112 Sum_probs=23.3
Q ss_pred eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHH-cCCCC
Q 006275 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA-GQEEP 149 (652)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~-G~~~p 149 (652)
.+..+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 34678999999999999999999999999999999 99843
No 293
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.61 E-value=2.1e-11 Score=123.55 Aligned_cols=131 Identities=14% Similarity=0.195 Sum_probs=84.3
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccce----------ec
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNY----------FE 494 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~----------~~ 494 (652)
.+++++.+.|+...+++++++++++| +.|+||||||||||+++|++... .|.+.+++.++...+ +.
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 101 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 101 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHH
Confidence 45667777777777899999999999 99999999999999999999885 688888775542111 11
Q ss_pred ccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEe
Q 006275 495 QNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLD 568 (652)
+.. ....+...+.|++....... ...+..+. .++....|||||+||+.+++|+..+|++ ||
T Consensus 102 ~~~-~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~----------~~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld 168 (254)
T 1ixz_A 102 ETA-KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT----------LNQLLVEMDGFEKDTAIVVMAATNRPDI--LD 168 (254)
T ss_dssp HHH-TTSSSEEEEEETHHHHHC---------CHHHHHH----------HHHHHHHHHTCCTTCCEEEEEEESCGGG--SC
T ss_pred HHH-HhcCCeEEEehhhhhhhcccCccccccchHHHHH----------HHHHHHHHhCCCCCCCEEEEEccCCchh--CC
Confidence 111 01122233334442211100 00011111 1223346899999999999999999987 68
Q ss_pred CCCC
Q 006275 569 EPTN 572 (652)
Q Consensus 569 EPt~ 572 (652)
++.-
T Consensus 169 ~~l~ 172 (254)
T 1ixz_A 169 PALL 172 (254)
T ss_dssp GGGG
T ss_pred HHHc
Confidence 7654
No 294
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.60 E-value=8.7e-10 Score=109.96 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=43.9
Q ss_pred EEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec
Q 006275 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 424 ~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (652)
.|+++|+...|+. +++|.+ ++++|+||||||||||+++|+|++.|++|.|.++|.++
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 3889998776642 566777 89999999999999999999999999999999988765
No 295
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.59 E-value=5.6e-08 Score=106.96 Aligned_cols=177 Identities=15% Similarity=0.109 Sum_probs=100.9
Q ss_pred eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCccCCCCCHHHHHHHhhHHHH
Q 006275 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (652)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~ 190 (652)
+.|+++..-+++|+++.|.|++|+|||||+..|++...+..| ..+.|++-+. +..+-.........
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--------~~Vl~~s~E~------s~~~l~~r~~~~~~ 256 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN--------ENVAIFSLEM------SAQQLVMRMLCAEG 256 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS--------CCEEEEESSS------CHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC--------CcEEEEECCC------CHHHHHHHHHHHHc
Confidence 467888777999999999999999999999999987654333 1355555432 22211100000000
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHhhHHHHHHHHHHHHhCChhcHHHHHHHHhhhcCCCcccccCCCCCCChHHHHHHHH
Q 006275 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (652)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv~L 270 (652)
.. ..+.+ ... .+... ...++.+.+..++..+-..+. ...+|.++.+ +.
T Consensus 257 ~~--~~~~l----~~g----------------------~l~~~-~~~~~~~a~~~l~~~~l~i~d-~~~~s~~~i~--~~ 304 (454)
T 2r6a_A 257 NI--NAQNL----RTG----------------------KLTPE-DWGKLTMAMGSLSNAGIYIDD-TPSIRVSDIR--AK 304 (454)
T ss_dssp TC--CHHHH----HTS----------------------CCCHH-HHHHHHHHHHHHHSSCEEEEC-CTTCCHHHHH--HH
T ss_pred CC--CHHHH----hcC----------------------CCCHH-HHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHH--HH
Confidence 00 00000 000 00000 011222333333222112222 4678999887 55
Q ss_pred HHHHc--cCCCeEEEeCCCCCCCH--------HHHHHHHHHH----ccCCCeEEEEec---------C--HH--------
Q 006275 271 GKILL--QDPDLLLLDEPTNHLDL--------DTIEWLEGYL----GKQDVPMVIISH---------D--RA-------- 317 (652)
Q Consensus 271 AraL~--~~p~iLLLDEPts~LD~--------~~~~~l~~~L----~~~g~tvIivsH---------d--~~-------- 317 (652)
++.+. .+|+++++|+++...+. .....+.+.| ++.+++||+++| + +.
T Consensus 305 ~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg 384 (454)
T 2r6a_A 305 CRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESG 384 (454)
T ss_dssp HHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTC
T ss_pred HHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccc
Confidence 66665 68999999999998853 1223333333 456999999999 2 22
Q ss_pred HHHhhcCeEEEEcCCe
Q 006275 318 FLDQLCTKIVETEMGV 333 (652)
Q Consensus 318 ~l~~~~d~ii~l~~G~ 333 (652)
.+.+.||.|+.|..+.
T Consensus 385 ~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 385 SIEQDADIVAFLYRDD 400 (454)
T ss_dssp SHHHHCSEEEEEEETT
T ss_pred hhHhhCCEEEEEeccc
Confidence 4677899999997664
No 296
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.58 E-value=4.3e-08 Score=94.47 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=31.5
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q 006275 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (652)
Q Consensus 267 Rv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (652)
.+.+|++++.+|+++++| ||+||...+..+++.|.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTIL 187 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHH
Confidence 467899999999999999 99999999999988764
No 297
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.58 E-value=1.1e-08 Score=102.07 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=23.3
Q ss_pred eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHh-CCCCC
Q 006275 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-GLEKP 476 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~-g~~~p 476 (652)
...+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4578999999999999999999999999999999 99844
No 298
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.53 E-value=1.8e-07 Score=99.24 Aligned_cols=138 Identities=19% Similarity=0.255 Sum_probs=80.5
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-ECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHH
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL-LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~ 524 (652)
-+++|+++.|.||+|||||||+..++.......|.+. ++... .. ...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~------------~~----~~~---------------- 104 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH------------AL----DPE---------------- 104 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC------------CC----CHH----------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC------------Cc----CHH----------------
Confidence 4789999999999999999998888755433333332 22110 00 000
Q ss_pred HHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccC--CCeEEEeCCCCCC----------CH---HH----HHHHHHH
Q 006275 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP--STLLVLDEPTNHL----------DI---PS----KEMLEEA 585 (652)
Q Consensus 525 ~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~--p~lLlLDEPt~~L----------D~---~~----~~~l~~~ 585 (652)
...++|+..+... .....+. .+-+.++++++.+ |+++|+|||++.+ |. .. .+.+.++
T Consensus 105 -~a~~lG~~~~~l~-i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L 180 (349)
T 2zr9_A 105 -YAKKLGVDTDSLL-VSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 180 (349)
T ss_dssp -HHHHTTCCGGGCE-EECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHH
T ss_pred -HHHHcCCCHHHeE-EecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHH
Confidence 0112232211000 0011233 3345677877754 9999999999998 32 11 1222222
Q ss_pred ---HHhcCceEEEEecCHH----------------HHHhhccEEEEEeCCEEE
Q 006275 586 ---ISEYKGTVITVSHDRY----------------FVKQIVNRVVEVKGSNLQ 619 (652)
Q Consensus 586 ---l~~~~~tvi~vsHd~~----------------~i~~~~drvi~l~~g~i~ 619 (652)
+++.+.|||+++|-.. .+..+||.++.++.+++.
T Consensus 181 ~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 181 TGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred HHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 3456779999999654 256789999999876554
No 299
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.52 E-value=5.4e-09 Score=105.82 Aligned_cols=52 Identities=31% Similarity=0.407 Sum_probs=36.2
Q ss_pred CceEEEeE-EEEe-CCeeeeeeeeEEEEC---CCEEEEECCCCccHHHHHHHHHcCC
Q 006275 96 SGVKLENI-SKSY-KGVTVLKDVTWEVKK---GEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 96 ~~i~v~~l-s~~y-~~~~vL~~vsl~i~~---Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+.|+++|+ +|+| ++.++|+++||+|.+ |++++|+|++||||||++++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46999999 9999 677899999999999 9999999999999999999999854
No 300
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.50 E-value=1.3e-05 Score=99.58 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=26.5
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
+++|+.+.|.||+|+|||||+..++....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 89999999999999999999999877653
No 301
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.50 E-value=1.2e-08 Score=116.27 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=97.0
Q ss_pred eeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCe-eEEEECceeccc-----ceecccccc---
Q 006275 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-GEVLLGEHNVLP-----NYFEQNQAE--- 499 (652)
Q Consensus 429 ~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~-G~i~~~g~~~~~-----~~~~~~~~~--- 499 (652)
+++.-|+...+++++++.+.+|+.+.|+||||+|||||+++|++++++.. |.+.+.+.+... .++++....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~ 118 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIV 118 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHH
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHH
Confidence 44555777889999999999999999999999999999999999998887 777776543211 111110000
Q ss_pred -----------------cCCCCCCHHHHHHHhhh--------hccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHH
Q 006275 500 -----------------ALDLDKTVLETVAEAAE--------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (652)
Q Consensus 500 -----------------~~~~~~tv~e~~~~~~~--------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~L 554 (652)
......++.+|+..... .........+++.+... ......+|+|++|++..
T Consensus 119 e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~----~~~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 119 EKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD----PFQSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC----CC----CCCCGGGGEEC
T ss_pred HHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec----hhhcCCccccccccccC
Confidence 00000000000000000 00000112222222111 12225699999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q 006275 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588 (652)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 588 (652)
++....++.+|+|||... |++.....|.++|++
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 899999999999974
No 302
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.48 E-value=8.6e-09 Score=104.34 Aligned_cols=52 Identities=17% Similarity=0.355 Sum_probs=36.4
Q ss_pred cEEEEEee-eeEe-CCeeeeeceEEEEEc---CeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 423 SVVTIKNL-EFGY-EDRLLFNRANLTIER---GEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 423 ~~i~~~~v-~~~y-~~~~vl~~isl~i~~---Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++++++|+ +++| ++..+|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999 9999 777899999999999 9999999999999999999999865
No 303
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.46 E-value=1.2e-07 Score=90.45 Aligned_cols=60 Identities=25% Similarity=0.200 Sum_probs=46.5
Q ss_pred eee--eeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE---------EECC-------CCceEEEEeccCc
Q 006275 111 TVL--KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAK-------SNMKIAFLSQEFE 171 (652)
Q Consensus 111 ~vL--~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i---------~~~~-------~~~~i~~v~Q~~~ 171 (652)
..+ +++++++.+| +++|+||||||||||+++|.+.+.+..|.. ...+ ....|.+++|++.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 345 6889999999 999999999999999999999888766532 1121 2246888888863
No 304
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.45 E-value=6.8e-08 Score=94.16 Aligned_cols=126 Identities=18% Similarity=0.190 Sum_probs=76.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~ 531 (652)
+++|+|+|||||||+.+.|+++ |...++...+. ... ..+. ...+.++...+|
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~~----~~~----~~~~---------------~~~~~~i~~~~g 55 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVVA----REV----VAKD---------------SPLLSKIVEHFG 55 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHHH----HHT----TCSS---------------CHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHHH----HHH----ccCC---------------hHHHHHHHHHhC
Confidence 6899999999999999999984 44444432211 000 0000 011233344444
Q ss_pred CChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-CceEEEEecCHHHH--Hhhcc
Q 006275 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY-KGTVITVSHDRYFV--KQIVN 608 (652)
Q Consensus 532 l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tvi~vsHd~~~i--~~~~d 608 (652)
.. . -.+.|+.+|..+++.+..+|+.+..+ .+.+++..+..+.+.+... +.+||+.+|.+.+. ...||
T Consensus 56 ~~--~------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d 125 (206)
T 1jjv_A 56 AQ--I------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCD 125 (206)
T ss_dssp TT--C------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCS
T ss_pred HH--H------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCC
Confidence 31 1 14678999999999888887654333 3456677777777777654 34788888988765 67799
Q ss_pred EEEEEeC
Q 006275 609 RVVEVKG 615 (652)
Q Consensus 609 rvi~l~~ 615 (652)
++++++.
T Consensus 126 ~vi~l~~ 132 (206)
T 1jjv_A 126 RILVVDV 132 (206)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999974
No 305
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.44 E-value=9.6e-10 Score=117.79 Aligned_cols=131 Identities=15% Similarity=0.063 Sum_probs=78.5
Q ss_pred eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE-Ccee----cccceecccccccCCCCCCHHHHHH
Q 006275 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEHN----VLPNYFEQNQAEALDLDKTVLETVA 512 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~-~g~~----~~~~~~~~~~~~~~~~~~tv~e~~~ 512 (652)
.+++++++++++|++++|+||||||||||+++|+|. .+|.+.. .... ...+.++|... .+..+.+....+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~-~l~dd~~~~~~~~ 232 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFL-VVFEDVKGTGGES 232 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSC-EEETTCCCSTTTT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhH-HHHHHHHHHHHHH
Confidence 579999999999999999999999999999999985 4677665 2110 01111122110 0000000000000
Q ss_pred Hhh--hhc--cHHHHHHHHh---------------hCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEE-EeCCCC
Q 006275 513 EAA--EDW--RIDDIKGLLG---------------RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV-LDEPTN 572 (652)
Q Consensus 513 ~~~--~~~--~~~~~~~~L~---------------~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLl-LDEPt~ 572 (652)
... ... ....+...++ ..-+.....+.....+++|+++|+..+++++..|++++ ||+|+.
T Consensus 233 r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 233 RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 000 000 0011222232 11122234567778899999999999888899999998 999987
No 306
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.44 E-value=1e-07 Score=92.15 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=30.4
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q 006275 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588 (652)
Q Consensus 552 v~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 588 (652)
...|++++.+|+++++| ||++|..+...+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 35689999999999999 999999999988887754
No 307
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.43 E-value=8.1e-08 Score=93.22 Aligned_cols=40 Identities=18% Similarity=0.370 Sum_probs=30.9
Q ss_pred EEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee
Q 006275 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (652)
Q Consensus 444 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (652)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~ 40 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISH 40 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEecee
Confidence 57888999999999999999999999999974 45555543
No 308
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.40 E-value=1.5e-07 Score=100.44 Aligned_cols=133 Identities=15% Similarity=0.236 Sum_probs=77.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-----------CCeeEEEECceecc----cceecccccccCCCCCCHHHHHHHh--
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEK-----------PRGGEVLLGEHNVL----PNYFEQNQAEALDLDKTVLETVAEA-- 514 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~-----------p~~G~i~~~g~~~~----~~~~~~~~~~~~~~~~tv~e~~~~~-- 514 (652)
+++|+|++|||||||++.|+|... |..|.|.++|.++. +++..+.+........+..+.+..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~ 260 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDA 260 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCE
Confidence 389999999999999999999875 67789999886542 2322211000000000011111100
Q ss_pred ----h--hhcc------HHHHHHHHhhCCCChh---hhccCcCCCCHHHHHHHHHH----HHH-ccCCCeEEEeCCCCCC
Q 006275 515 ----A--EDWR------IDDIKGLLGRCNFKAD---MLDRKVSLLSGGEKARLAFC----KFM-VKPSTLLVLDEPTNHL 574 (652)
Q Consensus 515 ----~--~~~~------~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqrqrv~LA----ral-~~~p~lLlLDEPt~~L 574 (652)
. .... ...+.+.+..++.... ....++..+|+|+++++.++ +++ ..+|++ +|+|++
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~ 336 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISAL 336 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTT
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECC
Confidence 0 0000 1123456666554211 11355677898988888877 665 444454 899999
Q ss_pred CHHHHHHHHHHHHh
Q 006275 575 DIPSKEMLEEAISE 588 (652)
Q Consensus 575 D~~~~~~l~~~l~~ 588 (652)
|..+...+.+.|.+
T Consensus 337 ~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 337 KRTNLELLRDKIYQ 350 (364)
T ss_dssp TTBSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 99999999888765
No 309
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.38 E-value=4.2e-07 Score=96.71 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=46.7
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCeEEEe-CCCCCCCHHHHHHHHHHHcc-C-CCeEEEEe--cCHH
Q 006275 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLD-EPTNHLDLDTIEWLEGYLGK-Q-DVPMVIIS--HDRA 317 (652)
Q Consensus 255 ~~~~~LSGGqkqRv~LAraL~~~p~iLLLD-EPts~LD~~~~~~l~~~L~~-~-g~tvIivs--Hd~~ 317 (652)
.+...+|+|++|++. +.+...++-++++| +|.+++|......+...+.+ . ++++|+|. ||+.
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 456789999998876 55556777789999 99999999886655544432 2 78899988 8864
No 310
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.33 E-value=2.8e-07 Score=87.81 Aligned_cols=39 Identities=28% Similarity=0.419 Sum_probs=35.1
Q ss_pred eceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeE
Q 006275 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (652)
Q Consensus 441 ~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~ 480 (652)
+++++++.+| +++|+||||||||||+++|.+++.+..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 6889999999 99999999999999999999988776553
No 311
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.33 E-value=4.2e-07 Score=96.45 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=31.2
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i 154 (652)
=+++|+++.|+||+|||||||+..+++...+..|.|
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999998876655543
No 312
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.32 E-value=3.5e-07 Score=100.75 Aligned_cols=112 Identities=19% Similarity=0.311 Sum_probs=71.7
Q ss_pred eeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhc
Q 006275 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518 (652)
Q Consensus 439 vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~ 518 (652)
.++++++.+++| +.|+||+|+|||||+++|++.... + ++..+.. .+.
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------~----f~~is~~-~~~---------------- 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------P----FFHISGS-DFV---------------- 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------C----EEEEEGG-GTT----------------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------C----eeeCCHH-HHH----------------
Confidence 455556666666 889999999999999999985311 1 1111100 000
Q ss_pred cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCC----------CCCCCHHHHHHHHHHHHh
Q 006275 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP----------TNHLDIPSKEMLEEAISE 588 (652)
Q Consensus 519 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEP----------t~~LD~~~~~~l~~~l~~ 588 (652)
...+ =.+++++|..+++|....|.||++||+ +++.|....+.+.+++..
T Consensus 87 -------------------~~~~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ 145 (476)
T 2ce7_A 87 -------------------ELFV--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE 145 (476)
T ss_dssp -------------------TCCT--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHH
T ss_pred -------------------HHHh--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHH
Confidence 0000 026788888999999999999999999 346777766666666643
Q ss_pred c-------CceEEEEecCHHHHH
Q 006275 589 Y-------KGTVITVSHDRYFVK 604 (652)
Q Consensus 589 ~-------~~tvi~vsHd~~~i~ 604 (652)
+ +..||.+||+.+.+.
T Consensus 146 ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 146 MDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhccCCCCCEEEEEecCChhhhc
Confidence 2 237899999986553
No 313
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.31 E-value=3.3e-07 Score=88.57 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=29.4
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q 006275 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (652)
Q Consensus 268 v~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (652)
...|++++.+|+++++| ||++|......+++.|.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence 45689999999999999 99999999888877653
No 314
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.29 E-value=2.9e-07 Score=89.69 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHcc-CCCeEEEEecCHHHH--HhhcCeEEEEcC
Q 006275 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-QDVPMVIISHDRAFL--DQLCTKIVETEM 331 (652)
Q Consensus 260 LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~-~g~tvIivsHd~~~l--~~~~d~ii~l~~ 331 (652)
.+.|+.+|..+++.+..+|+.+..+ .+.++|..+..+.+.+.. .+.++|+.+|.+... ...||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678999999999998888754333 345667777777666643 356788888987665 577999988863
No 315
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.29 E-value=4.3e-08 Score=95.40 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=30.8
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCC
Q 006275 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (652)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~ 159 (652)
.+..++|++++|+|+||||||||+++|+|.+ |.+.+++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d 61 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEAD 61 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccc
Confidence 3567899999999999999999999999976 77877654
No 316
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.28 E-value=3.4e-08 Score=115.58 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=56.8
Q ss_pred ccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHHHHHHHHHhc-C--ceEEE-EecCHHHHHhhccEE
Q 006275 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN-HLDIPSKEMLEEAISEY-K--GTVIT-VSHDRYFVKQIVNRV 610 (652)
Q Consensus 538 ~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~-~LD~~~~~~l~~~l~~~-~--~tvi~-vsHd~~~i~~~~drv 610 (652)
+..+.-+|+|+.+|..++++++.+++++|+|||.. +||......+...+... . .+|++ +||+.+.+.++++..
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 34566789999999999999999999999999996 99987765555544433 2 36666 599998888877643
No 317
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.28 E-value=3.4e-07 Score=100.89 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHccCCCeEEEeCC----------CCCCCHHHHHHHHHHHc-------cCCCeEEEEecCHHHHH
Q 006275 262 SGWQMRMSLGKILLQDPDLLLLDEP----------TNHLDLDTIEWLEGYLG-------KQDVPMVIISHDRAFLD 320 (652)
Q Consensus 262 GGqkqRv~LAraL~~~p~iLLLDEP----------ts~LD~~~~~~l~~~L~-------~~g~tvIivsHd~~~l~ 320 (652)
|++++|..+++|....|.||++||+ +++.|....+.+..+|. ..+..||.+||+.+.++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 6788899999999999999999999 34667665555554442 24678899999987664
No 318
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.28 E-value=2.6e-08 Score=96.96 Aligned_cols=60 Identities=25% Similarity=0.307 Sum_probs=45.9
Q ss_pred EeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE--EECceec
Q 006275 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV--LLGEHNV 488 (652)
Q Consensus 428 ~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i--~~~g~~~ 488 (652)
+|++..++.....+..++..++|++++|+||||||||||+++|++.+. ..|.+ .+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 356666666667778888889999999999999999999999999987 67887 7887654
No 319
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.27 E-value=1.7e-07 Score=91.17 Aligned_cols=57 Identities=19% Similarity=0.178 Sum_probs=39.7
Q ss_pred HHH-HHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcC
Q 006275 270 LGK-ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (652)
Q Consensus 270 LAr-aL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~ii~l~~ 331 (652)
.|+ +++.+|++++|||+|+++|.++.+.+.+.|.+...- +.++|.. ..+|+|++.++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~~----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKEP----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGST----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhcc----CCceEEEECCC
Confidence 456 788899999999999999998888877665421111 2334521 56899987763
No 320
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.26 E-value=1.1e-06 Score=93.35 Aligned_cols=122 Identities=19% Similarity=0.181 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhhC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRC 530 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~~ 530 (652)
-+++|+|++|+|||||++.|+|.. +..|.............+.... . . ..+++-.
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~-~-----------------~------~~l~Dt~ 222 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGY-F-----------------R------YQIIDTP 222 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETT-E-----------------E------EEEEECT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecC-c-----------------e------EEEEeCC
Confidence 368999999999999999999876 2211110000000000000000 0 0 0011112
Q ss_pred CCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEe-CCCCCCCHHHHHHHHHHHHh-c-CceEEEEe--cCHHH
Q 006275 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD-EPTNHLDIPSKEMLEEAISE-Y-KGTVITVS--HDRYF 602 (652)
Q Consensus 531 ~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLD-EPt~~LD~~~~~~l~~~l~~-~-~~tvi~vs--Hd~~~ 602 (652)
| ..+.++..+|+|++|++. +.+...++-++++| +|++++|......+.+.+.+ . +..+|+|. ||+..
T Consensus 223 G----~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 223 G----LLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp T----TSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred C----ccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 2 234566789999998876 66666788899999 99999999987776666654 3 46788888 88743
No 321
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.24 E-value=5.6e-07 Score=105.23 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=55.4
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHHHHHHHH-c--cCCCeEEE-EecCHHHHHhhcCe
Q 006275 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN-HLDLDTIEWLEGYL-G--KQDVPMVI-ISHDRAFLDQLCTK 325 (652)
Q Consensus 254 ~~~~~~LSGGqkqRv~LAraL~~~p~iLLLDEPts-~LD~~~~~~l~~~L-~--~~g~tvIi-vsHd~~~l~~~~d~ 325 (652)
+..+.-+|+|+.+|..++++++.+++++|+|||.. +||......+...+ . ....+|++ +||+.+.+..+++.
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 34467889999999999999999999999999997 99987654444333 2 22456666 49999888877764
No 322
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.22 E-value=5.1e-08 Score=94.92 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=43.3
Q ss_pred EeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE--EECC
Q 006275 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--IKAK 158 (652)
Q Consensus 101 ~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i--~~~~ 158 (652)
+|++..++.....+..++..++|++++|+|+||||||||+++|++.+. ..|.+ .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 466666777777788888889999999999999999999999999987 67876 5553
No 323
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.21 E-value=3.4e-07 Score=88.01 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=25.6
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCCCCC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPD 150 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~~p~ 150 (652)
|++++|+||||||||||+++|+|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 6789999999999999999999999843
No 324
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.21 E-value=2.6e-07 Score=88.79 Aligned_cols=31 Identities=39% Similarity=0.454 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCeeE
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~ 480 (652)
|++++|+||||||||||+++|+|++++..|.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 6789999999999999999999999855444
No 325
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.20 E-value=6.4e-07 Score=86.87 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=29.8
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCc
Q 006275 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (652)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G 152 (652)
++|++|++++|+||||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
No 326
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.18 E-value=7.8e-07 Score=86.22 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=30.1
Q ss_pred EEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee
Q 006275 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (652)
Q Consensus 445 l~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G 479 (652)
++|.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977666
No 327
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.14 E-value=1.3e-05 Score=85.08 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=36.9
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHcc------CCCeEEEEecCHHHHHhhc
Q 006275 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK------QDVPMVIISHDRAFLDQLC 323 (652)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l~~~L~~------~g~tvIivsHd~~~l~~~~ 323 (652)
.+|.+|+|||+... |......|..++.+ .+.++|+++|+.++...+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 45889999999876 98888888887743 4778999999987655443
No 328
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.13 E-value=2.7e-06 Score=90.73 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=40.6
Q ss_pred HHHHhhhcCCCccc---ccCCCCCCChHHHHHHHHH----HHH-ccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q 006275 239 VSKLMPELGFTADD---GDRLVASFSSGWQMRMSLG----KIL-LQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (652)
Q Consensus 239 i~~ll~~lgl~~~~---~~~~~~~LSGGqkqRv~LA----raL-~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (652)
+.+++..+++.... ...++..+|+|+++|+.++ +++ ..+|++ +|+|++|......|.+.|.
T Consensus 281 ~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~ 349 (364)
T 2qtf_A 281 SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIY 349 (364)
T ss_dssp HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHH
Confidence 34556666543211 1223567898999988877 666 444554 8999999999888877664
No 329
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.09 E-value=2.7e-07 Score=93.32 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=33.6
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHh---CCCCCCeeEEE
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVL 482 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~---g~~~p~~G~i~ 482 (652)
++|++++|+|||||||||++++|+ |+..|++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999987
No 330
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.09 E-value=8.8e-06 Score=89.41 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006275 263 GWQMRMSLGKILLQDPDLLLLDEPTN-HLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (652)
Q Consensus 263 GqkqRv~LAraL~~~p~iLLLDEPts-~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (652)
.+.+....+...+.+++++|+..... ++.. ...++.++|++.++.+|+|.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~-~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTA-ADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCH-HHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCCh-HHHHHHHHHHHcCCCEEEEEECccch
Confidence 47777788888888999777765544 4444 44678888888889999998877654
No 331
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.08 E-value=1e-06 Score=85.62 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=32.7
Q ss_pred EEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec
Q 006275 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 444 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (652)
.++.++|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 3667899999999999999999999999987 8888887654
No 332
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.05 E-value=5.7e-07 Score=90.95 Aligned_cols=43 Identities=26% Similarity=0.247 Sum_probs=34.0
Q ss_pred eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHH---cCCCCCCcEEE
Q 006275 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA---GQEEPDSGNVI 155 (652)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~---G~~~p~~G~i~ 155 (652)
..++++.+ ++|++++|+|||||||||++++|+ |+..+++|.+.
T Consensus 17 ~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 17 RLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp ------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred hhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 33444443 789999999999999999999999 99999999887
No 333
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.02 E-value=6.3e-06 Score=86.79 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=41.2
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH-HHccC-CCeEEEEec
Q 006275 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLGKQ-DVPMVIISH 314 (652)
Q Consensus 258 ~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~~l~~-~L~~~-g~tvIivsH 314 (652)
..||.++.+|+..|...+.+++++|.|+|.. .+.......+ +.++. +..+|+|.|
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~--si~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYV--RIEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEEECCTTC--CHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCC--cHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 4699999999999999999999999999864 4444433333 33445 678888764
No 334
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.02 E-value=1.5e-06 Score=82.95 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=29.1
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCC-CCcEEE
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVI 155 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-~~G~i~ 155 (652)
+|++++|+||||||||||+++|++.+++ ..|.|.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 6899999999999999999999999874 445543
No 335
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=2.3e-06 Score=83.01 Aligned_cols=38 Identities=24% Similarity=0.199 Sum_probs=24.8
Q ss_pred eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
..+++||||++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35899999999999999999999999999999999765
No 336
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.01 E-value=1.6e-05 Score=84.46 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=33.3
Q ss_pred eeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHc--CCCCCCcEEE
Q 006275 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEPDSGNVI 155 (652)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G--~~~p~~G~i~ 155 (652)
..+|++++++++ .++|||++|||||||++.|+| ++++.+|.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 357889999998 899999999999999999999 5677777654
No 337
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.99 E-value=1.9e-06 Score=82.25 Aligned_cols=34 Identities=9% Similarity=0.213 Sum_probs=29.4
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEE
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVL 482 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-~~G~i~ 482 (652)
+|++++|+||||||||||+++|++.+++ ..|.|.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 6899999999999999999999999874 455554
No 338
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.98 E-value=8.3e-06 Score=86.48 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=31.8
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (652)
-|++|+++.|+||+|||||||+..+++...+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999998877666655
No 339
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.98 E-value=2.7e-06 Score=82.54 Aligned_cols=38 Identities=21% Similarity=0.099 Sum_probs=24.8
Q ss_pred eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 437 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
...++|+||++.+|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46799999999999999999999999999999999765
No 340
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.97 E-value=4.4e-06 Score=88.90 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=34.0
Q ss_pred eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhC--CCCCCeeEEEEC
Q 006275 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG--LEKPRGGEVLLG 484 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g--~~~p~~G~i~~~ 484 (652)
.+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~ 70 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRR 70 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCS
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCc
Confidence 57888999988 899999999999999999999 667777766533
No 341
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.97 E-value=2e-05 Score=83.71 Aligned_cols=122 Identities=18% Similarity=0.188 Sum_probs=70.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCe--eEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHhh
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGR 529 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~~--G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~~ 529 (652)
.+.|+||+|+|||||++.+++...+.. ..+.++.. ...+..+. +..++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~----------------~~~~~~~~------------~~~l~~~ 97 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF----------------IYRNFTAI------------IGEIARS 97 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT----------------TCCSHHHH------------HHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc----------------cCCCHHHH------------HHHHHHH
Confidence 799999999999999999999887653 12222110 00111111 1222233
Q ss_pred CCCChhhhccCcCCCCHHHHHHHHHHHH-HccCCCeEEEeCCCCCCCHHHHHHHHHHHHh------cCceEEEEecCHHH
Q 006275 530 CNFKADMLDRKVSLLSGGEKARLAFCKF-MVKPSTLLVLDEPTNHLDIPSKEMLEEAISE------YKGTVITVSHDRYF 602 (652)
Q Consensus 530 ~~l~~~~~~~~~~~LSgGqrqrv~LAra-l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tvi~vsHd~~~ 602 (652)
++.. .+....+.++......... -..+|.+|+|||+... |......|..++.+ .+.++|++||+.++
T Consensus 98 l~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 98 LNIP-----FPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TTCC-----CCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred hCcc-----CCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 3321 1111233333222211111 1245889999999876 88888888888754 24589999999876
Q ss_pred HHhhc
Q 006275 603 VKQIV 607 (652)
Q Consensus 603 i~~~~ 607 (652)
...+.
T Consensus 172 ~~~l~ 176 (389)
T 1fnn_A 172 LNNLD 176 (389)
T ss_dssp HHTSC
T ss_pred HHHhC
Confidence 55443
No 342
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.95 E-value=1.2e-06 Score=91.83 Aligned_cols=45 Identities=31% Similarity=0.304 Sum_probs=41.0
Q ss_pred eeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
+++++|++++|++++|+|+||+||||++..|++.+.+..|+|.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468899999999999999999999999999999999988988874
No 343
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.92 E-value=3e-07 Score=96.23 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=42.3
Q ss_pred eeeEeCCeeeeeceEEEEEcCe------EEEEEcCCCCcHHHHHHHHhCCCC--CCeeEEEE
Q 006275 430 LEFGYEDRLLFNRANLTIERGE------KTAIIGPNGCGKSTLLKLIMGLEK--PRGGEVLL 483 (652)
Q Consensus 430 v~~~y~~~~vl~~isl~i~~Ge------~~~i~G~NGsGKSTLl~~l~g~~~--p~~G~i~~ 483 (652)
+++.|++...|++++..|..++ ++||+||||||||||+++|.+++. |.+|.+.+
T Consensus 66 l~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 66 LSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 4455666666777777777666 999999999999999999999987 56676544
No 344
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.92 E-value=2.3e-07 Score=93.56 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=45.6
Q ss_pred EEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 99 ~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
+++++.+.|+...+++++++++++| ++|+||||||||||+++|+|... .|.|.++
T Consensus 27 ~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~ 81 (254)
T 1ixz_A 27 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 81 (254)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEee
Confidence 4456666666667899999999999 99999999999999999999875 5666654
No 345
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.91 E-value=1.8e-05 Score=83.33 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=66.1
Q ss_pred eeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhcc
Q 006275 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR 519 (652)
Q Consensus 440 l~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~ 519 (652)
|+.+.--+++|+.+.|.|++|+|||||+..++.......+.|. |+. ..++..+.+..
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl---------~fS--------lEms~~ql~~R------ 92 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA---------VFS--------LEMSAEQLALR------ 92 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE---------EEE--------SSSCHHHHHHH------
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE---------EEe--------CCCCHHHHHHH------
Confidence 4444445889999999999999999999888765422222221 222 12232222211
Q ss_pred HHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q 006275 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (652)
Q Consensus 520 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD 575 (652)
+......+++ ..+.+ ..||.++.+|+..|...+.+++++|.|+|...++
T Consensus 93 ---lls~~~~v~~-~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 93 ---ALSDLTSINM-HDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ---HHHHHHCCCH-HHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ---HHHHhhCCCH-HHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 1111222221 11111 3699999999999999999999999999875543
No 346
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.89 E-value=7.5e-08 Score=106.77 Aligned_cols=131 Identities=14% Similarity=0.186 Sum_probs=81.4
Q ss_pred EEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccccee----------c
Q 006275 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF----------E 494 (652)
Q Consensus 425 i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~----------~ 494 (652)
.+++++...|....+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.++...+. .
T Consensus 41 ~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lf 116 (499)
T 2dhr_A 41 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 116 (499)
T ss_dssp HHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHT
T ss_pred HHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHH
Confidence 44556655566667889999999999 99999999999999999999875 6788888765432111 1
Q ss_pred ccccccCCCCCCHHHHHHHhhhhc------cHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEe
Q 006275 495 QNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (652)
Q Consensus 495 ~~~~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLD 568 (652)
+.. ....+...+.|++....... ..++....+. +....||||++|+..+++|...+|++ ||
T Consensus 117 q~a-~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~----------~LL~~Ldg~~~~~~viviAatn~p~~--LD 183 (499)
T 2dhr_A 117 ETA-KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN----------QLLVEMDGFEKDTAIVVMAATNRPDI--LD 183 (499)
T ss_dssp TTS-SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH----------HHHHHGGGCCSSCCCEEEECCSCGGG--SC
T ss_pred HHH-HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH----------HHHHHhcccccCccEEEEEecCChhh--cC
Confidence 110 00111222233332111000 0111111111 12234889999999999999999988 89
Q ss_pred CCCC
Q 006275 569 EPTN 572 (652)
Q Consensus 569 EPt~ 572 (652)
||.-
T Consensus 184 ~aLl 187 (499)
T 2dhr_A 184 PALL 187 (499)
T ss_dssp TTTS
T ss_pred cccc
Confidence 9875
No 347
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.89 E-value=2.8e-07 Score=94.44 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=46.1
Q ss_pred EEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 99 ~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
+++++.+.|+...+++++++++++| ++|+||||||||||+++|++... .|.|.++
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~ 105 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 105 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEec
Confidence 3456666676667899999999999 99999999999999999999875 5666654
No 348
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.89 E-value=2.8e-07 Score=96.44 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=48.7
Q ss_pred EeEEEEeCCeeeeeeeeEEEECCC------EEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCCCceEEEEeccCc
Q 006275 101 ENISKSYKGVTVLKDVTWEVKKGE------KVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSNMKIAFLSQEFE 171 (652)
Q Consensus 101 ~~ls~~y~~~~vL~~vsl~i~~Ge------~~~lvG~NGsGKSTLl~~L~G~~~p--~~G~i~~~~~~~~i~~v~Q~~~ 171 (652)
+.+++.|++...|++++..+..+. ++||+||||||||||+++|.+++.+ +.| .+++++++..
T Consensus 64 rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~---------~v~~i~~D~f 133 (321)
T 3tqc_A 64 RLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP---------NVEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC---------CEEEEEGGGG
T ss_pred HHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC---------eEEEEeeccc
Confidence 345666777778888888888877 9999999999999999999999873 444 3566667643
No 349
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.88 E-value=3.6e-06 Score=96.79 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=35.2
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006275 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (652)
Q Consensus 273 aL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (652)
+-..+.-++++| |+.++++.++.++.. +++.+.++|++.|.++..
T Consensus 95 l~~ad~~ilVvD-~~~g~~~qt~~~~~~-~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 95 LEAADAALVAVS-AEAGVQVGTERAWTV-AERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHCSEEEEEEE-TTTCSCHHHHHHHHH-HHHTTCCEEEEEECGGGC
T ss_pred HhhcCcEEEEEc-CCcccchhHHHHHHH-HHHccCCEEEEecCCchh
Confidence 335688899999 999999998866544 445688999999998854
No 350
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.88 E-value=3e-05 Score=84.18 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=66.8
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHh
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG 528 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~ 528 (652)
++.+++++|+|||||||++..|++.+.+..++|.+-+.+.. + . ...+ ....+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~----r--~--------~a~e------------qL~~~~~ 149 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY----R--P--------AAYD------------QLLQLGN 149 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS----C--H--------HHHH------------HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc----c--h--------hHHH------------HHHHHHH
Confidence 57899999999999999999999999887777766443321 0 0 0111 1122222
Q ss_pred hCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCC-CC--CCHHHHHHHHHHHHhc
Q 006275 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT-NH--LDIPSKEMLEEAISEY 589 (652)
Q Consensus 529 ~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt-~~--LD~~~~~~l~~~l~~~ 589 (652)
..+++.. ........-.-.+-+++.+...+++++|+|+|. .+ .|......+..+++..
T Consensus 150 ~~gv~~~---~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~ 210 (433)
T 3kl4_A 150 QIGVQVY---GEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL 210 (433)
T ss_dssp TTTCCEE---CCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH
T ss_pred hcCCcee---eccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh
Confidence 3333210 000111222222335666666789999999887 45 7777777777665543
No 351
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.86 E-value=3.7e-06 Score=83.59 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=33.8
Q ss_pred EEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee
Q 006275 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (652)
Q Consensus 445 l~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (652)
.+.++|++++|+|+||||||||+++|+|. +|.|.+.+.+
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 34578999999999999999999999998 6888887654
No 352
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.85 E-value=3.2e-05 Score=81.70 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=25.8
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998875
No 353
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.84 E-value=6.9e-05 Score=78.42 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=25.4
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCC
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
-+++|+++.|.||+|||||||...++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4789999999999999999999888764
No 354
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.84 E-value=5.2e-05 Score=79.41 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=25.8
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
-+++|+++.|.|++|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999988864
No 355
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.84 E-value=5.2e-06 Score=82.55 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=31.5
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~ 158 (652)
..++|++++|+|+||||||||+++|+|. .|+|.+.+
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 4578999999999999999999999997 67777654
No 356
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.83 E-value=2.8e-06 Score=82.61 Aligned_cols=41 Identities=20% Similarity=0.120 Sum_probs=35.9
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECcee
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (652)
.++|++++|+|+||||||||++.|++.+++.+|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 46789999999999999999999999998888888775544
No 357
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.82 E-value=9.4e-06 Score=85.92 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=25.8
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCCCCC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPD 150 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~ 150 (652)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999999876553
No 358
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.81 E-value=9.3e-06 Score=79.38 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=27.5
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCCCC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p 149 (652)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999887
No 359
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.80 E-value=2.4e-05 Score=84.83 Aligned_cols=151 Identities=15% Similarity=0.036 Sum_probs=84.8
Q ss_pred eeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceeccc-ceeccc----ccccC--
Q 006275 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-NYFEQN----QAEAL-- 501 (652)
Q Consensus 429 ~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-~~~~~~----~~~~~-- 501 (652)
++++.|++.. ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.++.. ....|- ....+
T Consensus 81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v 156 (425)
T 2ffh_A 81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV 156 (425)
T ss_dssp HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE
Confidence 4555665433 567777 899999999999999999999999999988999886655421 111110 00000
Q ss_pred CC---CCCHHHHHHHhhhhccHHHHHHHHhhC---CCChhhhccCcCC--CCHHHHHHHHHHHHHccCCCeEEEeCCCCC
Q 006275 502 DL---DKTVLETVAEAAEDWRIDDIKGLLGRC---NFKADMLDRKVSL--LSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573 (652)
Q Consensus 502 ~~---~~tv~e~~~~~~~~~~~~~~~~~L~~~---~l~~~~~~~~~~~--LSgGqrqrv~LAral~~~p~lLlLDEPt~~ 573 (652)
.+ ..+..+. +.+.++.+ ++.--..|.++.. -..-+.+...+++++..++-+|++|- +.+
T Consensus 157 ~~~~~~~~p~~i------------~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa-~tg 223 (425)
T 2ffh_A 157 LEVMDGESPESI------------RRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA-MTG 223 (425)
T ss_dssp EECCTTCCHHHH------------HHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG-GGT
T ss_pred EecCCCCCHHHH------------HHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEec-cch
Confidence 00 0111110 11222211 2211234554431 12346677778888877777888884 556
Q ss_pred CCHHHHHHHHHHHHhcCceEEEEec
Q 006275 574 LDIPSKEMLEEAISEYKGTVITVSH 598 (652)
Q Consensus 574 LD~~~~~~l~~~l~~~~~tvi~vsH 598 (652)
.|... .+...-...+.+-|++|+
T Consensus 224 q~av~--~a~~f~~~l~i~GVIlTK 246 (425)
T 2ffh_A 224 QEALS--VARAFDEKVGVTGLVLTK 246 (425)
T ss_dssp THHHH--HHHHHHHHTCCCEEEEES
T ss_pred HHHHH--HHHHHHhcCCceEEEEeC
Confidence 54432 222222234556667776
No 360
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.79 E-value=2.4e-06 Score=89.46 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=43.0
Q ss_pred eeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec
Q 006275 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 440 l~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (652)
+++++|++++|++++|+|+||+||||++..|++.+.+.+|+|.+.+.++
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4678888899999999999999999999999999999889998866553
No 361
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.78 E-value=1e-05 Score=93.15 Aligned_cols=133 Identities=13% Similarity=0.077 Sum_probs=72.1
Q ss_pred EEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEECceecccceecccccccCCCCCCHHHHHHHhhh-hccH
Q 006275 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE-DWRI 520 (652)
Q Consensus 444 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~-~~~~ 520 (652)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|..+.. +............. .... .+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d-~~~~e~~~giti~~-------~~~~~~~~- 72 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTD-YTPEAKLHRTTVRT-------GVAPLLFR- 72 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSC-CSHHHHHTTSCCSC-------EEEEEEET-
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccccc-CCHHHHhcCCeEEe-------cceEEeeC-
Confidence 467789999999999999999999999977654 56766 33332211 00000000000000 0000 000
Q ss_pred HHHHHHHhhCCCChhhhccCcC-CCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecC
Q 006275 521 DDIKGLLGRCNFKADMLDRKVS-LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHD 599 (652)
Q Consensus 521 ~~~~~~L~~~~l~~~~~~~~~~-~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd 599 (652)
+..-...|.+.. .++ ......+-..++-++++| |+.+++..+...+.. +.+.+..+|++.|.
T Consensus 73 ----------~~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~-~~~~~ip~ilv~NK 135 (665)
T 2dy1_A 73 ----------GHRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERAWTV-AERLGLPRMVVVTK 135 (665)
T ss_dssp ----------TEEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHH-HHHTTCCEEEEEEC
T ss_pred ----------CEEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHH-HHHccCCEEEEecC
Confidence 000112222211 011 122233335688899999 999999988865544 44567788899999
Q ss_pred HHHH
Q 006275 600 RYFV 603 (652)
Q Consensus 600 ~~~i 603 (652)
++..
T Consensus 136 iD~~ 139 (665)
T 2dy1_A 136 LDKG 139 (665)
T ss_dssp GGGC
T ss_pred Cchh
Confidence 8853
No 362
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.77 E-value=1.1e-05 Score=78.97 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=29.5
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEE
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEV 481 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p-~~G~i 481 (652)
++|++++|+||||||||||++.|++.++| ..+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~ 40 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSI 40 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEE
Confidence 57999999999999999999999999987 33333
No 363
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.77 E-value=5e-06 Score=80.84 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=33.6
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
.++|++++|+|+||||||||+++|++.+++..|.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 56789999999999999999999999988877877653
No 364
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.75 E-value=7.5e-06 Score=79.54 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=26.7
Q ss_pred EEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 445 l~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
+...+|+.++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445899999999999999999999999875
No 365
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.73 E-value=1.1e-05 Score=78.50 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=26.9
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34455899999999999999999999999876
No 366
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.73 E-value=3.7e-06 Score=89.93 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=44.8
Q ss_pred eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE-CCCCc----eEEEEeccC
Q 006275 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK-AKSNM----KIAFLSQEF 170 (652)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~-~~~~~----~i~~v~Q~~ 170 (652)
.+++++++.+++|++++|+||||||||||+++|+|. ..|.+.. ..... .+++++|.+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~ 218 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQF 218 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCS
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchh
Confidence 588999999999999999999999999999999995 4677765 21111 355566654
No 367
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.72 E-value=3.1e-05 Score=80.86 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHH-HHHHHHccCCCe--EEEEec
Q 006275 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGKQDVP--MVIISH 314 (652)
Q Consensus 260 LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~-~l~~~L~~~g~t--vIivsH 314 (652)
||+++++|+..|...+.++++++.|+|. ++..... .+..+.++.+.. +|+|.|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 8999999999999999999999999986 4444433 233344455777 888876
No 368
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.72 E-value=9.5e-06 Score=76.56 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=31.4
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (652)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999875 7777776543
No 369
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.70 E-value=1.6e-05 Score=84.19 Aligned_cols=125 Identities=23% Similarity=0.216 Sum_probs=66.8
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee----EEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHH
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG----EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G----~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~ 523 (652)
..+..+.|.||+|+|||||++.+++...+..| .+.++... . .+..+ ..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~----------~------~~~~~------------~~ 94 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ----------I------DTPYR------------VL 94 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH----------H------CSHHH------------HH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC----------C------CCHHH------------HH
Confidence 45778999999999999999999987754322 22222100 0 01111 11
Q ss_pred HHHHhhCCCChhhhccCcCCCCHHHH-HHHHHHHHHccCCCeEEEeCCCCCCC---HHHHHHHHHHHHhc---CceEEEE
Q 006275 524 KGLLGRCNFKADMLDRKVSLLSGGEK-ARLAFCKFMVKPSTLLVLDEPTNHLD---IPSKEMLEEAISEY---KGTVITV 596 (652)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSgGqr-qrv~LAral~~~p~lLlLDEPt~~LD---~~~~~~l~~~l~~~---~~tvi~v 596 (652)
..++..++... +....+..+. +++.-+..-...|.+|++||+.+..+ ......+.+.+... +.++|++
T Consensus 95 ~~i~~~l~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~ 169 (386)
T 2qby_A 95 ADLLESLDVKV-----PFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGI 169 (386)
T ss_dssp HHHTTTTSCCC-----CSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEE
T ss_pred HHHHHHhCCCC-----CCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEE
Confidence 22233333211 1112334432 22211111123488999999988663 33444555555432 3489999
Q ss_pred ecCHHHHHh
Q 006275 597 SHDRYFVKQ 605 (652)
Q Consensus 597 sHd~~~i~~ 605 (652)
||+.+....
T Consensus 170 ~~~~~~~~~ 178 (386)
T 2qby_A 170 TNDVKFVDL 178 (386)
T ss_dssp ESCGGGGGG
T ss_pred ECCCChHhh
Confidence 998865443
No 370
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.68 E-value=5.1e-06 Score=93.20 Aligned_cols=43 Identities=30% Similarity=0.324 Sum_probs=37.8
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEE-ECceec
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVL-LGEHNV 488 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G-~i~-~~g~~~ 488 (652)
.+++|++++|+|+||||||||+++|+|.+.|++| .+. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999887 674 787544
No 371
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.67 E-value=0.00011 Score=77.52 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=25.5
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCC
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988874
No 372
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.66 E-value=5.5e-07 Score=95.28 Aligned_cols=59 Identities=19% Similarity=0.120 Sum_probs=49.0
Q ss_pred EeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECce
Q 006275 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (652)
Q Consensus 428 ~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~ 486 (652)
+++.+.|+.+.+++++++.+.+|.+++|+|+||+|||||++.|++.+.+..|++.+-+.
T Consensus 34 ~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 34 RHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp CCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 34445666667888999999999999999999999999999999998887787766443
No 373
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.65 E-value=2.2e-05 Score=76.30 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=34.3
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCCCceEEEEeccCcc
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~~~~~i~~v~Q~~~~ 172 (652)
++++|.+++|+|++|||||||++.|++.++ .+.+++|+..+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-------------~~~~i~~D~~~ 57 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-------------NCSVISQDDFF 57 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-------------TEEEEEGGGGB
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-------------CcEEEeCCccc
Confidence 567899999999999999999999999864 25677777544
No 374
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.63 E-value=1.6e-05 Score=74.93 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=28.6
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~ 158 (652)
.+|++++|+|+|||||||++++|++.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 468999999999999999999999864 6666553
No 375
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.62 E-value=0.00033 Score=71.75 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=67.7
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHh
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG 528 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~ 528 (652)
++..+.|.||+|+|||||++++++..... -+.++. . .+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~--~~~i~~------------~-~l--------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSAT--FLNISA------------A-SL--------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCE--EEEEES------------T-TT---------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCC--eEEeeH------------H-HH---------------------------
Confidence 35568999999999999999999865210 011100 0 00
Q ss_pred hCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHH----------HHHHHHHHHhcC-------c
Q 006275 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS----------KEMLEEAISEYK-------G 591 (652)
Q Consensus 529 ~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~~~----------~~~l~~~l~~~~-------~ 591 (652)
....+ -+++++.+..++++...+|.+|++||+.+-++... ...+...+.... .
T Consensus 91 --------~~~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 91 --------TSKYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp --------SSSSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred --------hhccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 00001 23577778888888888999999999987765322 223444444432 2
Q ss_pred eEEEEecCHHH----HHhhccEEEEE
Q 006275 592 TVITVSHDRYF----VKQIVNRVVEV 613 (652)
Q Consensus 592 tvi~vsHd~~~----i~~~~drvi~l 613 (652)
.||.+|++.+. +.+-+++++.+
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~ 186 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYV 186 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEEC
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEe
Confidence 57778887532 22235555544
No 376
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.61 E-value=0.00018 Score=71.48 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=24.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCcE
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p~~G~ 153 (652)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 48999999999999999999987766654
No 377
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.61 E-value=1.1e-05 Score=90.61 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=35.5
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCc-EEE-ECC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-NVI-KAK 158 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G-~i~-~~~ 158 (652)
.+++|++++|+|+||||||||+++|+|.+.|++| .+. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5789999999999999999999999999999886 664 554
No 378
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.60 E-value=5.8e-07 Score=95.11 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=49.1
Q ss_pred eEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE
Q 006275 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (652)
Q Consensus 98 i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~ 156 (652)
++.++..+.|+...+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+..|+|.+
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 44455566666667889999999999999999999999999999999998877666543
No 379
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.56 E-value=1.8e-06 Score=89.63 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHc--cCCCeEEEeCCCCCCCHHH-HHHHHHHHHh----cCc--eEEEEecCHHHHHhhccEEE
Q 006275 544 LSGGEKARLAFCKFMV--KPSTLLVLDEPTNHLDIPS-KEMLEEAISE----YKG--TVITVSHDRYFVKQIVNRVV 611 (652)
Q Consensus 544 LSgGqrqrv~LAral~--~~p~lLlLDEPt~~LD~~~-~~~l~~~l~~----~~~--tvi~vsHd~~~i~~~~drvi 611 (652)
+|+|++ .+++++. ..|.++++ |.+|... ...+.+.+.+ ++. .+.+++|+-+-+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 899987 4556665 68999999 8999876 5555555543 332 56677788777777766554
No 380
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.54 E-value=2.9e-05 Score=72.86 Aligned_cols=28 Identities=39% Similarity=0.372 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p 149 (652)
.|.+++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4688999999999999999999997643
No 381
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.53 E-value=0.00019 Score=77.87 Aligned_cols=35 Identities=31% Similarity=0.158 Sum_probs=29.8
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~ 156 (652)
++.+++++|++||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999988776555543
No 382
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.50 E-value=0.0002 Score=73.34 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHH----------HHHHHHHHHcc-------CCCeEEEEecCHH
Q 006275 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD----------TIEWLEGYLGK-------QDVPMVIISHDRA 317 (652)
Q Consensus 261 SGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~----------~~~~l~~~L~~-------~g~tvIivsHd~~ 317 (652)
+++++.|..++.+...+|.+|++||+.+.++.. ....+...+.. .+..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 467777888888888899999999998876532 22233333321 2345677888764
No 383
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.50 E-value=3.4e-05 Score=72.41 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=25.3
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p 476 (652)
.|++++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999999998754
No 384
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.48 E-value=0.00028 Score=70.09 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=30.9
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC-----ceEEEEec
Q 006275 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK-----GTVITVSH 598 (652)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~-----~tvi~vsH 598 (652)
..+++++|+..+.+.++......+..++..++ .++|+++|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 35789999999998998877777777665432 38888898
No 385
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.48 E-value=4.7e-05 Score=70.43 Aligned_cols=29 Identities=38% Similarity=0.547 Sum_probs=24.2
Q ss_pred eeeEEEECCCEEEEECCCCccHHHHHHHHH
Q 006275 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (652)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~ 144 (652)
+..+++.+| +++|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 345556665 99999999999999999986
No 386
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.48 E-value=9.3e-05 Score=68.44 Aligned_cols=30 Identities=40% Similarity=0.616 Sum_probs=24.1
Q ss_pred ceEEEEEcCeEEEEEcCCCCcHHHHHHHHhC
Q 006275 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 442 ~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
+.++++.+| +.+|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344555544 899999999999999999863
No 387
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.45 E-value=1.5e-05 Score=84.63 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=46.6
Q ss_pred EEEEEeeeeEeCC-eeeee--------------ceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 424 VVTIKNLEFGYED-RLLFN--------------RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 424 ~i~~~~v~~~y~~-~~vl~--------------~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
-+.++|+++.|+. +.+|+ |+.+.|.+|++++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4889999999985 56888 899999999999999999999999999999875
No 388
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.44 E-value=1.6e-05 Score=84.34 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=47.0
Q ss_pred CceEEEeEEEEeCCe-eeee--------------eeeEEEECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 96 SGVKLENISKSYKGV-TVLK--------------DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~-~vL~--------------~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
..+.++|+++.|+.. .+|+ |+.+.|.+|+.++|+||+|+|||||++.|++.+
T Consensus 132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 358899999999864 5888 899999999999999999999999999999865
No 389
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.42 E-value=0.00015 Score=75.59 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=27.9
Q ss_pred eeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhC
Q 006275 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 439 vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
-|+.+.--+++|+.+.|.|++|+|||||+..++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3555444589999999999999999999888764
No 390
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.40 E-value=0.00086 Score=73.03 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=33.1
Q ss_pred HHHHHHccCCCeEE-EeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006275 269 SLGKILLQDPDLLL-LDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (652)
Q Consensus 269 ~LAraL~~~p~iLL-LDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (652)
..+...+.+++++| +-+.++++.... .++.++|++.++.+|++-...+..
T Consensus 74 ~~~~~~~~~ad~il~vvD~~~~~~~~d-~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 74 QQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHTTCCSCEEEEEECCCC-
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECccCc
Confidence 34455566677444 556888888664 467778887788888877665543
No 391
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.36 E-value=8.9e-05 Score=87.07 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=28.5
Q ss_pred EEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 006275 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (652)
Q Consensus 445 l~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p 476 (652)
|.+++|+.+.|+||+|||||||+++|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35678999999999999999999999998754
No 392
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.35 E-value=6.8e-06 Score=92.35 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=49.1
Q ss_pred EEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECc
Q 006275 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (652)
Q Consensus 426 ~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g 485 (652)
-++++...|....++.++++++ +|+.+.|+||||+|||||+++|++...+..|.|.+.+
T Consensus 85 G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 85 GLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred cHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 3456666666566788888888 8999999999999999999999999988888886654
No 393
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.35 E-value=0.00089 Score=70.94 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.2
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+++|+++.|.|++|+|||||+..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998887543
No 394
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.32 E-value=4.8e-05 Score=72.07 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=30.8
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee--EEEECce
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEH 486 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G--~i~~~g~ 486 (652)
++|++++|+|++||||||+.+.|++.+++ .| .+.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence 47999999999999999999999998755 45 5555553
No 395
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.31 E-value=2.8e-05 Score=76.37 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=27.9
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCC---CCCCcEEEE
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNVIK 156 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~---~p~~G~i~~ 156 (652)
+.+++|+|++||||||++++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999865 456666543
No 396
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.31 E-value=8.6e-05 Score=72.05 Aligned_cols=31 Identities=23% Similarity=0.098 Sum_probs=28.0
Q ss_pred EEEEcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 445 l~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
-++++|.+++|+|++|||||||.+.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999999999874
No 397
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.31 E-value=7.7e-05 Score=74.12 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=30.6
Q ss_pred eeeeeEEEE---CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEE
Q 006275 113 LKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155 (652)
Q Consensus 113 L~~vsl~i~---~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~ 155 (652)
|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 555666665 8999999999999999999999999887 55554
No 398
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.28 E-value=0.0005 Score=75.04 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=31.4
Q ss_pred cCCCeEEEeCCCCCCCH-HHHHHHHHHHHhc---CceEEEEecCH
Q 006275 560 KPSTLLVLDEPTNHLDI-PSKEMLEEAISEY---KGTVITVSHDR 600 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~-~~~~~l~~~l~~~---~~tvi~vsHd~ 600 (652)
.+|++|++||+..-.+. .+...+...+... +..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 5677777777643 45888899973
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.27 E-value=6.4e-05 Score=71.19 Aligned_cols=31 Identities=35% Similarity=0.370 Sum_probs=26.9
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCCCCCCc
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G 152 (652)
.+|++++|+|++||||||++++|++.+++ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 47899999999999999999999998755 45
No 400
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.25 E-value=8.9e-05 Score=73.68 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=31.4
Q ss_pred eeceEEEEE---cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE
Q 006275 440 FNRANLTIE---RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (652)
Q Consensus 440 l~~isl~i~---~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~ 483 (652)
|.++||++. +|.+++|.|++||||||+++.|+..+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566677766 8999999999999999999999999887 555543
No 401
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.22 E-value=3.8e-05 Score=75.45 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC---CCCeeEEEE
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLE---KPRGGEVLL 483 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~---~p~~G~i~~ 483 (652)
+.+++|+|++||||||+.++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999998765 566676654
No 402
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.21 E-value=7.1e-05 Score=79.23 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=32.5
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECce
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~ 486 (652)
++.+++|+|++|||||||++.|+|.+.+.+|+|.+.+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~ 110 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence 46789999999999999999999988887787766543
No 403
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.19 E-value=4.8e-05 Score=80.97 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=38.9
Q ss_pred cEEEEEeeeeEeCCeeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeE
Q 006275 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (652)
Q Consensus 423 ~~i~~~~v~~~y~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~ 480 (652)
..+.+.|++..|+.+.++++++|+| +|+|++|+|||||++.|+|...+..|.
T Consensus 16 ~~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 3488999999998888999999987 999999999999999999876554444
No 404
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.19 E-value=8.9e-05 Score=78.48 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=31.7
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
+++.+++|+|++|||||||++.|+|.+.+..|+|.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~ 108 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVL 108 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEE
Confidence 4567899999999999999999999988877776543
No 405
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.19 E-value=0.00061 Score=74.36 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=31.1
Q ss_pred cCCCeEEEeCCCCCCCH-HHHHHHHHHH---ccCCCeEEEEecCH
Q 006275 276 QDPDLLLLDEPTNHLDL-DTIEWLEGYL---GKQDVPMVIISHDR 316 (652)
Q Consensus 276 ~~p~iLLLDEPts~LD~-~~~~~l~~~L---~~~g~tvIivsHd~ 316 (652)
.+|++|++||+....+. .+.+.+...+ .+.|+.||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 4556666554 45688999999973
No 406
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.19 E-value=7.6e-06 Score=91.93 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=46.7
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 100 v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
++++.+.|....++.++++++ +|+.++|+||||+|||||+++|++.+.+..|.|.+.
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 455666665555778888888 899999999999999999999999998877776654
No 407
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.16 E-value=0.00052 Score=70.82 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=25.6
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
+.++..+.|.||+|+|||||.++|++...
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 45677899999999999999999998763
No 408
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.15 E-value=0.00018 Score=69.96 Aligned_cols=29 Identities=38% Similarity=0.547 Sum_probs=24.2
Q ss_pred eeeEEEECCCEEEEECCCCccHHHHHHHHH
Q 006275 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (652)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~ 144 (652)
+.++.+.+| +++|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445666665 99999999999999999885
No 409
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.14 E-value=0.00041 Score=65.04 Aligned_cols=27 Identities=41% Similarity=0.603 Sum_probs=23.6
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
++|.+++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999999864
No 410
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.11 E-value=7.8e-05 Score=72.75 Aligned_cols=42 Identities=24% Similarity=0.147 Sum_probs=36.0
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCee--EEEECcee
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEHN 487 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G--~i~~~g~~ 487 (652)
.+++|.+++|+|++||||||+.+.|++.+.|..| .+.+++..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3567999999999999999999999999987788 77777543
No 411
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.10 E-value=3.5e-05 Score=82.03 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=38.5
Q ss_pred CceEEEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcE
Q 006275 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (652)
Q Consensus 96 ~~i~v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~ 153 (652)
..+.+.|++..|+.+.++++++|.| +|+|++|+|||||++.|.|...+..|.
T Consensus 16 ~~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 4588899999998888899999877 999999999999999999876655544
No 412
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.08 E-value=5.2e-05 Score=82.21 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=44.7
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 100 v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
.+++++.|++.. ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 346677776544 678887 899999999999999999999999998887777653
No 413
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.08 E-value=0.00044 Score=67.23 Aligned_cols=29 Identities=38% Similarity=0.590 Sum_probs=23.4
Q ss_pred ceEEEEEcCeEEEEEcCCCCcHHHHHHHHh
Q 006275 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (652)
Q Consensus 442 ~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~ 471 (652)
+.++++.+ .+.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34555555 489999999999999999884
No 414
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.08 E-value=0.00036 Score=71.79 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=26.7
Q ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEE
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i 154 (652)
..+.|+||+|+||||++++|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 4799999999999999999999887666543
No 415
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.08 E-value=0.00042 Score=66.07 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=20.8
Q ss_pred eeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhC
Q 006275 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
.++++++++.+.. +++|+|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3678899988877 789999999999999999997
No 416
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.05 E-value=2.4e-05 Score=81.07 Aligned_cols=58 Identities=19% Similarity=0.103 Sum_probs=45.0
Q ss_pred EeeeeEeCCeeeeec-eEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec
Q 006275 428 KNLEFGYEDRLLFNR-ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 428 ~~v~~~y~~~~vl~~-isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (652)
+++...|++.. ++ ++++++ |++++++|+||+||||++..|++.+.+..|+|.+.+.+.
T Consensus 78 ~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 78 DELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34555555432 45 777766 999999999999999999999999988888887765543
No 417
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.04 E-value=8.4e-05 Score=73.84 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHH-HHHHHHccC-CC-eEEE-EecCHHHHHhhc
Q 006275 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTN-HLDLDTIE-WLEGYLGKQ-DV-PMVI-ISHDRAFLDQLC 323 (652)
Q Consensus 260 LSGGqkqRv~LAraL~~~p~iLLLDEPts-~LD~~~~~-~l~~~L~~~-g~-tvIi-vsHd~~~l~~~~ 323 (652)
.+.|...+.. ...+.+-+++++||.-. ++|..... .+..++... +. ++++ +|.+.+.+.++.
T Consensus 161 ~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~ 227 (235)
T 3llm_A 161 CTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYF 227 (235)
T ss_dssp EEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHT
T ss_pred ECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHc
Confidence 3557766653 33688999999999976 57776653 444444322 23 3333 355555544443
No 418
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.01 E-value=9.5e-05 Score=72.12 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=33.0
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCc--EEEEC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--NVIKA 157 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G--~i~~~ 157 (652)
.+++|.+++|+|++||||||+++.|++.+.|..| .+.++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 4568899999999999999999999998877677 55554
No 419
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.00 E-value=0.0032 Score=66.63 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=24.9
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+++|+++.|.|++|+|||||...++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999988877543
No 420
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.99 E-value=0.00015 Score=69.81 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=37.4
Q ss_pred eEeCC-eeeeeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCC--------CCCCeeEEEECce
Q 006275 432 FGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVLLGEH 486 (652)
Q Consensus 432 ~~y~~-~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~--------~~p~~G~i~~~g~ 486 (652)
+.|++ ..+++++|++.+++ +++|+|++|+|||||++.+.+- ..++.+.+.+++.
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp ------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 34554 36788888888777 5899999999999999999873 2234455666653
No 421
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.95 E-value=0.0019 Score=67.17 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=24.8
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHc
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G 145 (652)
-+++|+++.|.|++|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999998875
No 422
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.93 E-value=0.00064 Score=74.10 Aligned_cols=38 Identities=37% Similarity=0.561 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC------------CCeeEEEECceec
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEK------------PRGGEVLLGEHNV 488 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~------------p~~G~i~~~g~~~ 488 (652)
-+++|+|+||+|||||++.|+|... |..|.+.++|.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 3699999999999999999999854 6778899988754
No 423
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.91 E-value=0.00014 Score=80.55 Aligned_cols=55 Identities=29% Similarity=0.392 Sum_probs=42.6
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC
Q 006275 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (652)
Q Consensus 100 v~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~ 158 (652)
++++...|....+++++++.+++| +.|+||||+|||||+++|+|... .+.+.+++
T Consensus 43 l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g 97 (499)
T 2dhr_A 43 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 97 (499)
T ss_dssp HHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred HHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEeh
Confidence 344444454555788899999999 99999999999999999999874 55665543
No 424
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.90 E-value=0.00037 Score=66.39 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=26.6
Q ss_pred eeeEEEECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
++|++.++|..++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
No 425
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.86 E-value=0.00042 Score=66.83 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006275 125 KVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G 145 (652)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 426
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.85 E-value=0.00028 Score=67.14 Aligned_cols=36 Identities=33% Similarity=0.364 Sum_probs=30.3
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i 154 (652)
...+|.+++|+|++||||||+++.|++.+.+..|.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345789999999999999999999999876655554
No 427
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.83 E-value=0.0024 Score=66.35 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=24.5
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhC
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g 472 (652)
-+++|+++.|.|++|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988874
No 428
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.82 E-value=0.0027 Score=69.23 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=39.2
Q ss_pred CCCChHHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHH-HHHHHHccCCCeEEEEec
Q 006275 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGKQDVPMVIISH 314 (652)
Q Consensus 258 ~~LSGGqkqRv~LAraL~~~p~iLLLDEPts~LD~~~~~-~l~~~L~~~g~tvIivsH 314 (652)
..||..+.+|+.-|...+.+.++++.|+| +++..... .+..+.++.+..+|+|.+
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~--~~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTP--DLTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCT--TCBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCC--CCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 46899999999988888888889998876 44444433 334444456777888765
No 429
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.82 E-value=0.00071 Score=64.44 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=21.3
Q ss_pred eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999998887 7899999999999999999973
No 430
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.81 E-value=0.0006 Score=65.56 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEKP 476 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~p 476 (652)
..+.|.||+|+|||||++.|+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999876643
No 431
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.81 E-value=0.00029 Score=66.99 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=30.3
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (652)
..+|.++.|+|++||||||+.+.|++.+.+..+.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 34789999999999999999999999887666655
No 432
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.80 E-value=0.0014 Score=60.75 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
+++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999653
No 433
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.78 E-value=0.00067 Score=63.57 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999975
No 434
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.77 E-value=0.00052 Score=65.34 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=26.6
Q ss_pred ceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCC
Q 006275 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 442 ~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
++|++..+|.+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999876
No 435
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.77 E-value=0.0005 Score=66.58 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=26.2
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
...+|.+++|+||+|||||||++.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346789999999999999999999998764
No 436
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.77 E-value=0.00095 Score=62.85 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
+++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 437
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.76 E-value=0.00054 Score=66.01 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG 472 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g 472 (652)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 438
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.76 E-value=0.00066 Score=72.75 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=33.1
Q ss_pred EEcCeEEEEEcCCCCcHHHHHHHHhCC-----------CCCCeeEEEECce
Q 006275 447 IERGEKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLLGEH 486 (652)
Q Consensus 447 i~~Ge~~~i~G~NGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~ 486 (652)
+..|..++|+|+||+|||||++.|+|. ..|..|.+.+.+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 457788999999999999999999998 6788898887653
No 439
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.75 E-value=0.00023 Score=68.40 Aligned_cols=42 Identities=33% Similarity=0.507 Sum_probs=31.1
Q ss_pred EEEeCCe-eeeeeeeEEEECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 104 SKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 104 s~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
++.|++- ++++++++..+++ .++|+|++|+|||||++.+.+-
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4456553 5889999988887 5899999999999999999873
No 440
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.74 E-value=0.00076 Score=69.30 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (652)
..+.|+||+|+||||+.++|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 4688999999999999999999886655543
No 441
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.71 E-value=0.0016 Score=66.16 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.2
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.++..+.|.||.|+|||||++.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345568899999999999999998875
No 442
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.71 E-value=0.00017 Score=74.54 Aligned_cols=54 Identities=26% Similarity=0.196 Sum_probs=42.4
Q ss_pred EEeEEEEeCCeeeeee-eeEEEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE
Q 006275 100 LENISKSYKGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (652)
Q Consensus 100 v~~ls~~y~~~~vL~~-vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~ 156 (652)
.+++...|++.. ++ ++++++ |.+++++|+||+||||++..|++.+.+..|+|.+
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 345666666543 46 778766 9999999999999999999999998876666554
No 443
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.71 E-value=0.0007 Score=72.52 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=32.2
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcC-----------CCCCCcEEEECC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ-----------EEPDSGNVIKAK 158 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~-----------~~p~~G~i~~~~ 158 (652)
.+..|..++|||+||+|||||+++|+|. +.|..|.|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4467788999999999999999999998 567778777654
No 444
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.67 E-value=0.0012 Score=71.86 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=28.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC------------CCCcEEEECC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEE------------PDSGNVIKAK 158 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~------------p~~G~i~~~~ 158 (652)
.++|+|+||+|||||++.|+|... +.+|.+.++|
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC
Confidence 799999999999999999999864 4556666664
No 445
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.64 E-value=0.0034 Score=62.77 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=22.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEP 149 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p 149 (652)
.++|+|..|+|||||++.|+|....
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~~ 47 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRRF 47 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc
Confidence 5899999999999999999997543
No 446
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.63 E-value=0.00082 Score=65.01 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.1
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
...+|.+++|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345789999999999999999999998774
No 447
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.00012 Score=77.04 Aligned_cols=47 Identities=23% Similarity=0.249 Sum_probs=40.4
Q ss_pred EeCCeeeeeeeeEEEECCCE--EEEECCCCccHHHHHHHHHcCCCCCCc
Q 006275 106 SYKGVTVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (652)
Q Consensus 106 ~y~~~~vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~L~G~~~p~~G 152 (652)
.|+...+++.++..|+.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 27 ~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 34666688888889999998 999999999999999999998766554
No 448
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.59 E-value=8.7e-05 Score=77.98 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=41.8
Q ss_pred eeeEeCCeeeeeceEEEEEcCeE--EEEEcCCCCcHHHHHHHHhCCCCCCee
Q 006275 430 LEFGYEDRLLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (652)
Q Consensus 430 v~~~y~~~~vl~~isl~i~~Ge~--~~i~G~NGsGKSTLl~~l~g~~~p~~G 479 (652)
++..|+...+++.++..|+.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 44456667788888889999998 999999999999999999998765544
No 449
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.55 E-value=0.0015 Score=60.56 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999753
No 450
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.53 E-value=0.0013 Score=62.15 Aligned_cols=26 Identities=42% Similarity=0.668 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPR 477 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~ 477 (652)
+++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
No 451
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.52 E-value=0.0062 Score=60.06 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=38.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecC----------HHHHHhhcCeEEEEc
Q 006275 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD----------RAFLDQLCTKIVETE 330 (652)
Q Consensus 277 ~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd----------~~~l~~~~d~ii~l~ 330 (652)
+++++++||.-. |+.+..+.+.. |.+.+.+||++-|+ ...+..+||+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l~~-L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVANI-LAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHHHH-HHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHHHH-HHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 77765555544 44459999999993 344556899999875
No 452
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.50 E-value=0.0012 Score=62.23 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEPD 150 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p~ 150 (652)
.++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 58999999999999999999975443
No 453
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.48 E-value=0.0035 Score=60.78 Aligned_cols=42 Identities=17% Similarity=0.083 Sum_probs=32.5
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHH
Q 006275 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYF 602 (652)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~ 602 (652)
.++.+|++||.-. +|......+...+.+.. ..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 4578999999765 78888888888887653 378888887653
No 454
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.47 E-value=0.00088 Score=63.56 Aligned_cols=35 Identities=29% Similarity=0.255 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEECc
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGE 485 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~~p~---~G~i~~~g 485 (652)
.+++|+|++|||||||++.|.+.+++. -|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 579999999999999999999876443 35666554
No 455
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.44 E-value=0.0013 Score=62.23 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=22.7
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999853
No 456
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.44 E-value=0.0021 Score=66.64 Aligned_cols=100 Identities=21% Similarity=0.207 Sum_probs=0.0
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceecccceecccccccCCCCCCHHHHHHHhhhhccHHHHHHHHh
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG 528 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~L~ 528 (652)
.+..+.|.||+|+|||||++.|++...+....+.. .+..+...................
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~---------------------i~~~~~~~~~~~~~~~~~~~~~~~ 94 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIY---------------------SSADDFAQAMVEHLKKGTINEFRN 94 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEE---------------------EEHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE---------------------EEHHHHHHHHHHHHHcCcHHHHHH
Q ss_pred hCCCChhhhccCcCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCCCH--HHHHHHHHHHHhc---CceEEEEecC
Q 006275 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI--PSKEMLEEAISEY---KGTVITVSHD 599 (652)
Q Consensus 529 ~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~~p~lLlLDEPt~~LD~--~~~~~l~~~l~~~---~~tvi~vsHd 599 (652)
. ..++.+|++||+-. +.. .+...+...+... +..+|++++.
T Consensus 95 ~-----------------------------~~~~~vL~iDEi~~-l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 95 M-----------------------------YKSVDLLLLDDVQF-LSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp H-----------------------------HHTCSEEEEECGGG-GTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred H-----------------------------hcCCCEEEEcCccc-ccCChHHHHHHHHHHHHHHHCCCeEEEEecC
No 457
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.43 E-value=0.0032 Score=63.80 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
..+.-+.|.||.|+|||||+++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 445669999999999999999999875
No 458
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.42 E-value=0.0073 Score=62.56 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHH--c--cCCCeEEEeCCCCCCC-H----H---------HH-HH-------HHHHHccCCCeEEEEecC
Q 006275 262 SGWQMRMSLGKIL--L--QDPDLLLLDEPTNHLD-L----D---------TI-EW-------LEGYLGKQDVPMVIISHD 315 (652)
Q Consensus 262 GGqkqRv~LAraL--~--~~p~iLLLDEPts~LD-~----~---------~~-~~-------l~~~L~~~g~tvIivsHd 315 (652)
-++++.+.++.++ + .+|+++++|=.++-.- . + .+ +. |..++++.++++|++-|-
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3566667777776 4 4799999998877641 1 0 11 11 223456789999999997
Q ss_pred HH
Q 006275 316 RA 317 (652)
Q Consensus 316 ~~ 317 (652)
..
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 65
No 459
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.41 E-value=0.017 Score=61.28 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.6
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
=+++|+++.|.|+.|+|||||+..++-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3689999999999999999999877643
No 460
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.41 E-value=0.00095 Score=68.98 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHHHHc--cCCCeEEEeCCCCCCCHHH-HHHHHHHH----ccCCC--eEEEEecCHHHHHhhcCeEE
Q 006275 260 FSSGWQMRMSLGKILL--QDPDLLLLDEPTNHLDLDT-IEWLEGYL----GKQDV--PMVIISHDRAFLDQLCTKIV 327 (652)
Q Consensus 260 LSGGqkqRv~LAraL~--~~p~iLLLDEPts~LD~~~-~~~l~~~L----~~~g~--tvIivsHd~~~l~~~~d~ii 327 (652)
+|+|++ .+++++. ..|.++++ |.+|... ...+.+.+ +..+. .+.+++|+-+-+..+++.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 898886 4566665 68888888 8899765 44443332 23343 55566777766666666554
No 461
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.40 E-value=0.0013 Score=63.33 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.5
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 462
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.34 E-value=0.0049 Score=61.55 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
+++|+|++|+|||||++.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999998754
No 463
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.33 E-value=0.0017 Score=64.23 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.0
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHcC
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999974
No 464
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.32 E-value=0.0018 Score=61.17 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=22.7
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 465
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.31 E-value=0.0004 Score=73.17 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=33.0
Q ss_pred eeeeeeEEEECCCE--EEEECCCCccHHHHHHHHHcCCC
Q 006275 112 VLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 112 vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
+++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 67778888899998 99999999999999999998753
No 466
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.29 E-value=0.0037 Score=65.81 Aligned_cols=28 Identities=21% Similarity=0.458 Sum_probs=23.8
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999987663
No 467
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.25 E-value=0.00089 Score=67.23 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=32.5
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEECceec
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (652)
....+.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 345678899999999999999999998764 25677776543
No 468
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.25 E-value=0.00045 Score=72.76 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=32.7
Q ss_pred eeeeceEEEEEcCeE--EEEEcCCCCcHHHHHHHHhCCC
Q 006275 438 LLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 438 ~vl~~isl~i~~Ge~--~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367778888889988 9999999999999999999864
No 469
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.25 E-value=0.0015 Score=62.76 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998765
No 470
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.19 E-value=0.0024 Score=59.99 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~ 146 (652)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 471
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.18 E-value=0.0022 Score=63.55 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=23.6
Q ss_pred EcCeEEEEEcCCCCcHHHHHHHHhCC
Q 006275 448 ERGEKTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 448 ~~Ge~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
.+|.+++|+|++||||||+.+.|++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999874
No 472
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.17 E-value=0.0075 Score=65.70 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=28.8
Q ss_pred eeceEEEEEcCeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 440 l~~isl~i~~Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
|+.+.--+++|+.+.|.|++|+|||||...++...
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44444458999999999999999999998887654
No 473
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.14 E-value=0.0014 Score=62.21 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.3
Q ss_pred CEEEEECCCCccHHHHHHHHHcCCCC
Q 006275 124 EKVGLVGVNGAGKTTQLRIIAGQEEP 149 (652)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~L~G~~~p 149 (652)
.+++|+|++|||||||++.|++.+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 57999999999999999999987654
No 474
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.13 E-value=0.0016 Score=65.23 Aligned_cols=32 Identities=38% Similarity=0.553 Sum_probs=23.8
Q ss_pred eeeEEEECCCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
++++.++.| +.|+||+|+|||||+++|++...
T Consensus 39 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 39 KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 334444555 89999999999999999998753
No 475
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.10 E-value=0.00079 Score=70.38 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred eCCeeeeeceEEEEEcC--eEEEEEcCCCCcHHHHHHHHhCCCC-CCeeEEEECceecccceecccccccCCCCCCHHHH
Q 006275 434 YEDRLLFNRANLTIERG--EKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLET 510 (652)
Q Consensus 434 y~~~~vl~~isl~i~~G--e~~~i~G~NGsGKSTLl~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~tv~e~ 510 (652)
+|...+++.+.-.+..| ..+.|.||+|+|||||++.+++.+. +..+.+.+.+.+
T Consensus 40 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~----------------------- 96 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN----------------------- 96 (353)
T ss_dssp CSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC-----------------------
T ss_pred hCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc-----------------------
Q ss_pred HHHhhhhccHHHHHHHHhhCCCChhhhccCcCCCCHHHHHHHHHHHHHcc----------------CCCeEEEeCCCCCC
Q 006275 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK----------------PSTLLVLDEPTNHL 574 (652)
Q Consensus 511 ~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqrqrv~LAral~~----------------~p~lLlLDEPt~~L 574 (652)
+....+-..-+=.+....-. ++.|+++|| ...+
T Consensus 97 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE-~~~l 145 (353)
T 1sxj_D 97 ------------------------------ASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDE-ADSM 145 (353)
T ss_dssp ------------------------------SSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETT-GGGS
T ss_pred ------------------------------cccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEEC-CCcc
Q ss_pred CHHHHHHHHHHHHhcCc--eEEEEecCHH
Q 006275 575 DIPSKEMLEEAISEYKG--TVITVSHDRY 601 (652)
Q Consensus 575 D~~~~~~l~~~l~~~~~--tvi~vsHd~~ 601 (652)
+......+.+.+.+... .+|+++++..
T Consensus 146 ~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 146 TADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp CHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CHHHHHHHHHHHHhcCCCceEEEEeCchh
No 476
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.10 E-value=0.0022 Score=64.38 Aligned_cols=38 Identities=34% Similarity=0.276 Sum_probs=29.4
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC
Q 006275 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (652)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~~ 158 (652)
..+.+.++.|+|++||||||+.+.|+..+. .+.+.+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 345677899999999999999999998764 23455543
No 477
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.06 E-value=0.031 Score=60.56 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=24.7
Q ss_pred cCeEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 006275 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (652)
Q Consensus 449 ~Ge~~~i~G~NGsGKSTLl~~l~g~~~p~ 477 (652)
++.+++++|++|+||||++..|+..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46789999999999999999998776543
No 478
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.06 E-value=0.003 Score=58.50 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 479
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.04 E-value=0.0049 Score=64.81 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=23.9
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999997653
No 480
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.97 E-value=0.0014 Score=65.28 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.9
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
.-+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998543
No 481
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.95 E-value=0.023 Score=55.93 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=37.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecC----------HHHHHhhccEEEEEe
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHD----------RYFVKQIVNRVVEVK 614 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd----------~~~i~~~~drvi~l~ 614 (652)
+++++++||.- .|+.+..+.+.. +.+.+.+||++-|+ ...+..+||+|..|.
T Consensus 89 ~~dvViIDEaQ-~l~~~~ve~l~~-L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQ-FFDDRICEVANI-LAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGG-GSCTHHHHHHHH-HHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCc-cCcHHHHHHHHH-HHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 58999999995 477665555544 33457799999993 344556899999864
No 482
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.95 E-value=0.004 Score=58.24 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCCC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQEE 148 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~~ 148 (652)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997653
No 483
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.94 E-value=0.033 Score=58.99 Aligned_cols=28 Identities=43% Similarity=0.585 Sum_probs=24.3
Q ss_pred EEEcCeEEEEEcCCCCcHHHHHHHHhCC
Q 006275 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (652)
Q Consensus 446 ~i~~Ge~~~i~G~NGsGKSTLl~~l~g~ 473 (652)
-+++|+++.|.||.|+|||||...++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3789999999999999999998777543
No 484
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.90 E-value=0.0029 Score=67.70 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=30.8
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~i~~~ 157 (652)
.+..++|+|++|||||||++.|++...+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 566899999999999999999998877777777654
No 485
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.89 E-value=0.0043 Score=58.49 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.2
Q ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Q 006275 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
|.+++|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
No 486
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.89 E-value=0.0023 Score=64.04 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC
Q 006275 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 453 ~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
+.|+||+|+|||||+++|++...
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 88999999999999999998764
No 487
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.89 E-value=0.004 Score=57.68 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 488
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.89 E-value=0.021 Score=51.83 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=27.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEec
Q 006275 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSH 598 (652)
Q Consensus 561 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsH 598 (652)
+..+|++||. ..|+...+..+.++|.... ..+|++|.
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~ 114 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQEHRPFRLIGIGD 114 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSSSCSSCEEEEES
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhcCCCEEEEEECC
Confidence 4578999998 5688888888888886543 35666665
No 489
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.84 E-value=0.0048 Score=57.70 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~~ 475 (652)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 490
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.82 E-value=0.015 Score=61.23 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 451 e~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
..+.|.||.|+|||||.++|+...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999998765
No 491
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.80 E-value=0.027 Score=54.01 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=39.4
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCH----------HHHHhhcCeEEEEc
Q 006275 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR----------AFLDQLCTKIVETE 330 (652)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~----------~~l~~~~d~ii~l~ 330 (652)
.+.+++++||.-- +|++..+.+..+.. .++.||+..++. ..+..+||.|..+.
T Consensus 80 ~~~dvViIDEaqf-l~~~~v~~l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQF-FDDEIVEIVNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGGG-SCTHHHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred ccCCEEEEECCCC-CCHHHHHHHHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 3579999999644 77776666555444 488999998865 45667899998876
No 492
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.78 E-value=0.0046 Score=57.07 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=18.3
Q ss_pred EEEEECCCCccHHHHHHHH
Q 006275 125 KVGLVGVNGAGKTTQLRII 143 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L 143 (652)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 493
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.76 E-value=0.0015 Score=63.15 Aligned_cols=30 Identities=37% Similarity=0.519 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q 006275 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (652)
+++|+|++||||||+++.|+..+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998876543333
No 494
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.76 E-value=0.0014 Score=63.33 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQEEP 149 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~~p 149 (652)
+++|+|++||||||+++.|+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987654
No 495
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.75 E-value=0.0029 Score=62.83 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998543
No 496
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.70 E-value=0.0048 Score=60.01 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=0.0
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHc
Q 006275 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (652)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~L~G 145 (652)
...+-+++|+|++||||||+++.|+.
T Consensus 1 M~~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 1 MSLRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp -CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH
No 497
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.70 E-value=0.0048 Score=61.97 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006275 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (652)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~L~G~~ 147 (652)
+++|+||+|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 498
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.70 E-value=0.012 Score=55.59 Aligned_cols=36 Identities=33% Similarity=0.622 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-C----CCCCee----EEEECcee
Q 006275 452 KTAIIGPNGCGKSTLLKLIMG-L----EKPRGG----EVLLGEHN 487 (652)
Q Consensus 452 ~~~i~G~NGsGKSTLl~~l~g-~----~~p~~G----~i~~~g~~ 487 (652)
+++|+|+.|+|||||++.+.+ . ..|+.| .+.+++..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 589999999999999965544 3 456666 45555543
No 499
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.69 E-value=0.08 Score=57.38 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCC
Q 006275 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (652)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~L~G~~~p 149 (652)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999976654
No 500
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.69 E-value=0.0058 Score=57.60 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 006275 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (652)
Q Consensus 450 Ge~~~i~G~NGsGKSTLl~~l~g~~ 474 (652)
|.++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999997644
Done!