BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006276
(652 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 23/126 (18%)
Query: 506 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPS 565
++ V GN +C DC P P+WAS+NLGV +CI+CSG+HR+LGVH SKVRSLTLD WEP
Sbjct: 39 VQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWEPE 96
Query: 566 VITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKE 625
++ L LGN N ++E +++ + + KP S S KE
Sbjct: 97 LVKLMCELGNVIINQIYEARVEA---------------------MAVKKPGPSCSRQEKE 135
Query: 626 KFIHAK 631
+IHAK
Sbjct: 136 AWIHAK 141
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 23/126 (18%)
Query: 506 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPS 565
++ V GN +C DC P P+WAS+NLGV +CI+CSG+HR+LGVH SKVRSLTLD WEP
Sbjct: 39 VQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWEPE 96
Query: 566 VITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKE 625
++ L LGN N ++E +++ + + KP S S KE
Sbjct: 97 LVKLMCELGNVIINQIYEARVEA---------------------MAVKKPGPSCSRQEKE 135
Query: 626 KFIHAK 631
+IHAK
Sbjct: 136 AWIHAK 141
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 23/126 (18%)
Query: 506 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPS 565
++ V GN +C DC P P+WAS+NLGV +CI+CSG+HR+LGVH SKVRSLTLD WEP
Sbjct: 39 VQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWEPE 96
Query: 566 VITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKE 625
++ L LGN N ++E +++ + + KP S S KE
Sbjct: 97 LVKLMCELGNVIINQIYEARVEA---------------------MAVKKPGPSCSRQEKE 135
Query: 626 KFIHAK 631
+IHAK
Sbjct: 136 AWIHAK 141
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
Query: 503 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVW 562
I ++R+ GND C DCGAP+P W S NLG+L CIECSG+HR LGVH S+++SLTLD V
Sbjct: 8 ISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLD--VL 65
Query: 563 EPSVITLFQSLGNAFANSVWEELLQS 588
S + L +++GNA N + E L S
Sbjct: 66 GTSELLLAKNIGNAGFNEIMECCLPS 91
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 7/96 (7%)
Query: 503 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVW 562
+++L+R GN RCADCGAP+PDWAS LGV +C+ CSG+HRN+ +SKV+S+ LD W
Sbjct: 28 LELLQRP-GNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLD--AW 83
Query: 563 EPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTP 598
E + + S GN A + +E + S F+ TP
Sbjct: 84 EEAQVEFMASHGNDAARARFESKVPS---FYYRPTP 116
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 7/96 (7%)
Query: 503 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVW 562
+++L+R GN RCADCGAP+PDWAS LGV +C+ CSG+HRN+ +SKV+S+ LD W
Sbjct: 26 LELLQRP-GNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLD--AW 81
Query: 563 EPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTP 598
E + + S GN A + +E + S F+ TP
Sbjct: 82 EEAQVEFMASHGNDAARARFESKVPS---FYYRPTP 114
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLF 570
GN +C DCGA +P W S NLGVL CI+CSGVHR LGV S+++SLTLD + PS + L
Sbjct: 22 GNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLLA 79
Query: 571 QSLGNAFANSVWEELLQSRSA 591
++GN N V E L S
Sbjct: 80 LNMGNTSFNEVMEAQLPSHGG 100
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLF 570
GN +C DCGA +P W S NLGVL CI+CSGVHR LGV S+++SLTLD + PS + L
Sbjct: 41 GNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLLA 98
Query: 571 QSLGNAFANSVWEELLQSRSA 591
++GN N V E L S
Sbjct: 99 LNMGNTSFNEVMEAQLPSHGG 119
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 512 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQ 571
N CADC + P WAS N+GV +CI C+G+HRNLGVHIS+V+S+ LD W I Q
Sbjct: 27 NKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTQEQIQCMQ 84
Query: 572 SLGNAFANSVWEELL 586
+GN AN ++E L
Sbjct: 85 EMGNGKANRLYEAYL 99
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 512 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQ 571
N CADC A P WAS N+GV +CI C+G+HRNLGVHIS+V+S+ LD W I Q
Sbjct: 29 NKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTAEQIQCMQ 86
Query: 572 SLGNAFANSVWEELL 586
+GN A ++E L
Sbjct: 87 DMGNTKARLLYEANL 101
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 506 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPS 565
LR V N C DCGA P WAS+ GV +CI+CSGVHR+LGVH+S +RS LD W
Sbjct: 31 LRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSN-WNWF 89
Query: 566 VITLFQSLGNAFANSVWEE 584
+ Q GNA A + + +
Sbjct: 90 QLRCMQVGGNANATAFFRQ 108
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 38/48 (79%)
Query: 512 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDV 559
N++C DCG PDW S+N G+ +CI CSGVHR+LGVHIS VRS+ +D+
Sbjct: 22 NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDI 69
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 75.5 bits (184), Expect = 8e-14, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 506 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPS 565
LR V N C DCGA P WAS+ GV +CI+CSG HR+LGVH+S +RS LD W
Sbjct: 23 LRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSN-WSWF 81
Query: 566 VITLFQSLGNAFANSVWEE 584
+ Q GNA A+S + +
Sbjct: 82 QLRCMQVGGNASASSFFHQ 100
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 512 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQ 571
N+ C +CGA P W S+ G+ +C+ECSG HR LGVH+S VRS+T+D W+ + +
Sbjct: 37 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMK 94
Query: 572 SLGNA 576
+ GNA
Sbjct: 95 AGGNA 99
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 512 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQ 571
N+ C +CGA P W S+ G+ +C+ECSG HR LGVH+S VRS+T+D W+ + +
Sbjct: 38 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMK 95
Query: 572 SLGNA 576
+ GNA
Sbjct: 96 AGGNA 100
>pdb|2Q13|A Chain A, Crystal Structure Of Bar-Ph Domain Of Appl1
Length = 385
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 103/230 (44%), Gaps = 13/230 (5%)
Query: 6 LDDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFG--- 62
L+DSP R + EE A + + Y+ + + E + L+ +
Sbjct: 13 LEDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQR 72
Query: 63 ---GGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVK 119
GG ++ +S + +F+ + E+ + VL +Q+ + + Q+ DL E+
Sbjct: 73 FPLGGDDEVMS-----STLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEIL 127
Query: 120 EARKCFDKASLLYDQAREKFLSLRKGTKTD-VAAILEEELHSARSAFEQARFSLVTALSN 178
++ F AS +D A ++ L K + D V + E+++++R Q AL+
Sbjct: 128 TLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNT 187
Query: 179 VEAKKRFEFLEAVSGTMDAHLRYFKQGYELLH-QMEPYINQVLTYAQQSR 227
++ KK+ LE + G M A + +FK G E L+ Q+E ++ + T Q R
Sbjct: 188 LQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVR 237
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 505 VLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEP 564
++R N C DC + P W SL+ V +C+ CS HR +GVHIS VRS LD + P
Sbjct: 29 IVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLD--KFTP 86
Query: 565 SVITLFQSLGNAFANSVWEELL 586
+ GN A + ++++L
Sbjct: 87 IQLVRMDIGGNGRARNYFKQVL 108
>pdb|2ELB|A Chain A, Crystal Structure Of The Bar-Ph Domain Of Human Appl1
Length = 396
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 13/230 (5%)
Query: 6 LDDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASAL------E 59
L+DSP R + EE A + + Y+ + + E S L +
Sbjct: 33 LEDSPQTRSLLGVFEEDATAISNYXNQLYQAXHRIYDAQNE-LSAATHLTSKLLKEYEKQ 91
Query: 60 TFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVK 119
F G +D + + + +F+ + E+ + VL +Q+ + Q+ DL E+
Sbjct: 92 RFPLGGDDEVXSS----TLQQFSKVIDELSSCHAVLSTQLADAXXFPITQFKERDLKEIL 147
Query: 120 EARKCFDKASLLYDQAREKFLSLRKGTKTD-VAAILEEELHSARSAFEQARFSLVTALSN 178
++ F AS +D A ++ L K + D V + E+++++R Q AL+
Sbjct: 148 TLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTXXHYFCALNT 207
Query: 179 VEAKKRFEFLEAVSGTMDAHLRYFKQGYELLH-QMEPYINQVLTYAQQSR 227
++ KK+ LE + G A + +FK G E L+ Q+E ++ + T Q R
Sbjct: 208 LQYKKKIALLEPLLGYXQAQISFFKXGSENLNEQLEEFLANIGTSVQNVR 257
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 389 DQSDLRFCFRIIS--PTKNYTLQAESALDQMDWIEKITGV 426
D D R+CF+I S K+ LQAES D +WI I +
Sbjct: 354 DCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNI 393
>pdb|2Z0O|A Chain A, Crystal Structure Of Appl1-Bar-Ph Domain
Length = 387
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 13/230 (5%)
Query: 6 LDDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASAL------E 59
L+DSP R + EE A + + Y+ + + E S L +
Sbjct: 15 LEDSPQTRSLLGVFEEDATAISNYXNQLYQAXHRIYDAQNE-LSAATHLTSKLLKEYEKQ 73
Query: 60 TFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVK 119
F G +D + + + +F+ + E+ + VL +Q+ + Q+ DL E+
Sbjct: 74 RFPLGGDDEVXSS----TLQQFSKVIDELSSCHAVLSTQLADAXXFPITQFKERDLKEIL 129
Query: 120 EARKCFDKASLLYDQAREKFLSLRKGTKTD-VAAILEEELHSARSAFEQARFSLVTALSN 178
++ F AS +D A ++ L K + D V + E+++++R Q AL+
Sbjct: 130 TLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTXXHYFCALNT 189
Query: 179 VEAKKRFEFLEAVSGTMDAHLRYFKQGYELLH-QMEPYINQVLTYAQQSR 227
++ KK+ LE + G A + +FK G E L+ Q+E ++ + T Q R
Sbjct: 190 LQYKKKIALLEPLLGYXQAQISFFKXGSENLNEQLEEFLANIGTSVQNVR 239
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 389 DQSDLRFCFRIIS--PTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPE 437
D D R+CF+I S K+ LQAES D +WI I + + S+ PE
Sbjct: 336 DCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQIYLSENPE 386
>pdb|2Z0N|A Chain A, Crystal Structure Of Appl1-Bar Domain
Length = 280
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 13/230 (5%)
Query: 6 LDDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASAL------E 59
L+DSP R + EE A + + Y+ + + E S L +
Sbjct: 18 LEDSPQTRSLLGVFEEDATAISNYXNQLYQAXHRIYDAQNE-LSAATHLTSKLLKEYEKQ 76
Query: 60 TFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVK 119
F G +D + + + +F+ + E+ + VL +Q+ + Q+ DL E+
Sbjct: 77 RFPLGGDDEVXSS----TLQQFSKVIDELSSCHAVLSTQLADAXXFPITQFKERDLKEIL 132
Query: 120 EARKCFDKASLLYDQAREKFLSLRKGTKTD-VAAILEEELHSARSAFEQARFSLVTALSN 178
++ F AS +D A ++ L K + D V + E+++++R Q AL+
Sbjct: 133 TLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTXXHYFCALNT 192
Query: 179 VEAKKRFEFLEAVSGTMDAHLRYFKQGYELLH-QMEPYINQVLTYAQQSR 227
++ KK+ LE + G A + +FK G E L+ Q+E ++ + T Q R
Sbjct: 193 LQYKKKIALLEPLLGYXQAQISFFKXGSENLNEQLEEFLANIGTSVQNVR 242
>pdb|2Q12|A Chain A, Crystal Structure Of Bar Domain Of Appl1
Length = 265
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 99/230 (43%), Gaps = 13/230 (5%)
Query: 6 LDDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASAL------E 59
L+DSP R + EE A + + Y+ + + E S L +
Sbjct: 13 LEDSPQTRSLLGVFEEDATAISNYXNQLYQAXHRIYDAQNE-LSAATHLTSKLLKEYEKQ 71
Query: 60 TFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVK 119
F G +D + + +F+ + E+ + VL +Q+ + Q+ DL E+
Sbjct: 72 RFPLGGDDEVX----SSTLQQFSKVIDELSSCHAVLSTQLADAXXFPITQFKERDLKEIL 127
Query: 120 EARKCFDKASLLYDQAREKFLSLRKGTKTD-VAAILEEELHSARSAFEQARFSLVTALSN 178
++ F AS +D A ++ L K + D V + E+++++R Q AL+
Sbjct: 128 TLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTXXHYFCALNT 187
Query: 179 VEAKKRFEFLEAVSGTMDAHLRYFKQGYELLH-QMEPYINQVLTYAQQSR 227
++ KK+ LE + G A + +FK G E L+ Q+E ++ + T Q R
Sbjct: 188 LQYKKKIALLEPLLGYXQAQISFFKXGSENLNEQLEEFLANIGTSVQNVR 237
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 498 KSEKPIDVLRRVCG---NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 554
+ EK + +LR + G N +C DC P + ++ +G VC CSG R L +V+S
Sbjct: 8 QEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKS 66
Query: 555 LTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPP 599
+++ + I Q GN +W L RS+ D P
Sbjct: 67 ISMT--TFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDP 109
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 503 IDVLRRVCG---NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDV 559
+ +LR + G N +C DC P + ++ +G VC CSG R L +V+S+++
Sbjct: 8 LKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISM-- 64
Query: 560 KVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPP 599
+ I Q GN +W L RS+ D P
Sbjct: 65 TTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDP 104
>pdb|1ZWW|A Chain A, Crystal Structure Of Endophilin-A1 Bar Domain
pdb|1ZWW|B Chain B, Crystal Structure Of Endophilin-A1 Bar Domain
Length = 256
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 17/190 (8%)
Query: 45 GEGY-DGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHML 103
G GY + A A+ FG D + GP + + A+RE+ K+ L +V+
Sbjct: 83 GPGYPQAEALLAEAMLKFGRELGDDCNF---GPALGEVGEAMRELSEVKDSLDMEVKQNF 139
Query: 104 NDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARS 163
D L + DL E++ K + L + + R+G I +EEL A
Sbjct: 140 IDPLQNLHDKDLREIQHHLKKLEGRRLDFG-----YKKKRQGK------IPDEELRQALE 188
Query: 164 AFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYA 223
F++++ +++ N+ + E + +S + A L Y KQ ++L Q+ + + + A
Sbjct: 189 KFDESKEIAESSMFNL-LEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQA 247
Query: 224 QQSRERSNYE 233
S+ R Y+
Sbjct: 248 -SSQPRREYQ 256
>pdb|2D4C|A Chain A, Crystal Structure Of The Endophilin Bar Domain Mutant
pdb|2D4C|B Chain B, Crystal Structure Of The Endophilin Bar Domain Mutant
pdb|2D4C|C Chain C, Crystal Structure Of The Endophilin Bar Domain Mutant
pdb|2D4C|D Chain D, Crystal Structure Of The Endophilin Bar Domain Mutant
Length = 256
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 20/173 (11%)
Query: 45 GEGY-DGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHML 103
G GY + A A+ FG D + GP + + A+RE+ K+ L +V+
Sbjct: 88 GPGYPQAEALLAEAMLKFGRELGDDCNF---GPALGEVGEAMRELSEVKDSLDIEVKQNF 144
Query: 104 NDRLLQYVNIDLHEVKEA----RKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELH 159
D L + DL E++ A K + L +D ++ R+G I +EEL
Sbjct: 145 IDPLQNLHDKDLREIQSALQHHLKKLEGRRLDFDYKKK-----RQGK------IPDEELR 193
Query: 160 SARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212
A F++++ +++ N+ + E + +S + A L Y KQ ++L Q+
Sbjct: 194 QALEKFDESKEIAESSMFNL-LEMDIEQVSQLSALVQAQLEYHKQAVQILQQV 245
>pdb|2C08|A Chain A, Rat Endophilin A1 Bar Domain
Length = 204
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 75 GPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQ 134
GP + + A RE+ K+ L +V+ D L + DL E++ K + L +D
Sbjct: 68 GPALGEVGEAXRELSEVKDSLDXEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFD- 126
Query: 135 AREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGT 194
+ R+G I +EEL A F++++ ++ N+ + E + +S
Sbjct: 127 ----YKKKRQGK------IPDEELRQALEKFDESKEIAESSXFNL-LEXDIEQVSQLSAL 175
Query: 195 MDAHLRYFKQGYELLHQM 212
+ A L Y KQ ++L Q+
Sbjct: 176 VQAQLEYHKQAVQILQQV 193
>pdb|1X03|A Chain A, Crystal Structure Of Endophilin Bar Domain
Length = 252
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 75 GPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQ 134
GP + + A RE+ K+ L +V+ D L + DL E++ K + L +D
Sbjct: 116 GPALGEVGEAXRELSEVKDSLDIEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFD- 174
Query: 135 AREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGT 194
+ R+G I +EEL A F++++ ++ N+ + E + +S
Sbjct: 175 ----YKKKRQGK------IPDEELRQALEKFDESKEIAESSXFNL-LEXDIEQVSQLSAL 223
Query: 195 MDAHLRYFKQGYELLHQM 212
+ A L Y KQ ++L Q+
Sbjct: 224 VQAQLEYHKQAVQILQQV 241
>pdb|1X04|A Chain A, Crystal Structure Of Endophilin Bar Domain (Mutant)
Length = 230
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 75 GPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQ 134
GP + + A RE+ K+ L +V+ D L + DL E++ K + L +D
Sbjct: 94 GPALGEVGEAXRELSEVKDSLDIEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDY 153
Query: 135 AREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGT 194
++ R+G I +EEL A F++++ ++ N+ + E + +S
Sbjct: 154 KKK-----RQGK------IPDEELRQALEKFDESKEIAESSXFNL-LEXDIEQVSQLSAL 201
Query: 195 MDAHLRYFKQGYELLHQM 212
+ A L Y KQ ++L Q+
Sbjct: 202 VQAQLEYHKQAVQILQQV 219
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 285 SAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYY 325
S + G + G+L K++S+ W +R+FVL R + YY
Sbjct: 3 SGSSGNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYY 43
>pdb|1U5F|A Chain A, Crystal Structure Of The Ph Domain Of Skap-Hom With 8
Vector-Derived N-Terminal Residues
Length = 148
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 361 HYHGGVHDEKSAARHTVN----LLTSTIKVDADQSDLRFCFRIISPTKN-YTLQAESALD 415
+Y+G D++ ++ + +T++ D + CF I +P K Y A S D
Sbjct: 50 YYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKD---CCFEICAPDKRIYQFTAASPKD 106
Query: 416 QMDWIEKITGVIASLLSSQAPE 437
+W++++ ++ L S PE
Sbjct: 107 AEEWVQQLKFILQDLGSDVIPE 128
>pdb|4H8S|A Chain A, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|B Chain B, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|C Chain C, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|D Chain D, Crystal Structure Of Human Appl2barph Domain
Length = 407
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 382 STIKVDADQSDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIASLLSSQAPE 437
S + VD + D R+CF+I +P LQAES + +WI I + + + PE
Sbjct: 352 SVMAVDCE--DRRYCFQITTPNGKSGIILQAESRKENEEWICAINNISRQIYLTDNPE 407
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 286 AAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQ 329
+ G I+ G+L K+ S ++ +W++R+FVL ++ LYYY+ +
Sbjct: 1 GSSGSSGPIKMGWLKKQRSIVK-NWQQRYFVLRAQ-QLYYYKDE 42
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQ 329
+R+G+L K+ S WK+R+FVL S L+YYR +
Sbjct: 21 VVRRGWLYKQDSTGMKLWKKRWFVL-SDLCLFYYRDE 56
>pdb|1U5K|A Chain A, Recombinational Repair Protein Reco
pdb|1U5K|B Chain B, Recombinational Repair Protein Reco
pdb|1W3S|A Chain A, The Crystal Structure Of Reco From Deinococcus
Radiodurans.
pdb|1W3S|B Chain B, The Crystal Structure Of Reco From Deinococcus
Radiodurans.
pdb|2V1C|C Chain C, Crystal Structure And Mutational Study Of Recor Provide
Insight Into Its Role In Dna Repair
Length = 244
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 514 RCADCGAPEPDWASLNLGVLVCIECSGV 541
RCA CGAP+P+ G L+C +C+ +
Sbjct: 152 RCARCGAPDPEHPDPLGGQLLCSKCAAL 179
>pdb|2DA0|A Chain A, Solution Structure Of The Ph Domain Of Pip2-Dependent Arf1
Gtpase-Activating Protein From Human
Length = 114
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 377 VNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITG 425
+NLLT +K +A+ + F +IS + Y QAE D + WI +T
Sbjct: 53 LNLLTCQVKPNAED---KKSFDLISHNRTYHFQAEDEQDYVAWISVLTN 98
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 288 KGKVQTIRQGYLSKR---SSNL-RGDWKRRFFVLDSRGMLYY 325
+ K + ++QG+L SS L R +WK+R+FVL ++Y+
Sbjct: 53 RSKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYF 94
>pdb|1P6S|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Protein Kinase B Beta (PkbAKT)
Length = 111
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 289 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQ 329
+V I++G+L KR ++ W+ R+F+L S G Y+++
Sbjct: 2 NEVSVIKEGWLHKRGEYIK-TWRPRYFLLKSDGSFIGYKER 41
>pdb|1V5P|A Chain A, Solution Structure Of The N-Terminal Pleckstrin Homology
Domain Of Tapp2 From Mouse
Length = 126
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 395 FCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 433
FCF I + ++ Y LQA D DW+E + S SS
Sbjct: 87 FCFVINALSQRYFLQANDQKDLKDWVEALNQASKSGPSS 125
>pdb|3AJ4|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Complexed With O-Phospho-L-Serine
pdb|3AJ4|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Complexed With O-Phospho-L-Serine
pdb|3VIA|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
pdb|3VIA|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Length = 112
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 289 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQ 329
G + ++ G+L ++S+ L+ WK+ +F L S G L YY Q
Sbjct: 1 GSMAFVKSGWLLRQSTILK-RWKKNWFDLWSDGHLIYYDDQ 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,141,266
Number of Sequences: 62578
Number of extensions: 579555
Number of successful extensions: 1581
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1526
Number of HSP's gapped (non-prelim): 56
length of query: 652
length of database: 14,973,337
effective HSP length: 105
effective length of query: 547
effective length of database: 8,402,647
effective search space: 4596247909
effective search space used: 4596247909
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)