Query 006276
Match_columns 652
No_of_seqs 381 out of 2302
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 20:55:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0521 Putative GTPase activa 100.0 1.2E-74 2.5E-79 659.6 35.7 522 2-641 9-532 (785)
2 KOG1451 Oligophrenin-1 and rel 100.0 6E-47 1.3E-51 398.3 32.0 347 4-426 10-366 (812)
3 KOG0705 GTPase-activating prot 100.0 7.2E-44 1.6E-48 375.1 13.9 289 277-645 286-621 (749)
4 cd07606 BAR_SFC_plant The Bin/ 100.0 3.2E-39 7E-44 314.6 24.1 201 15-215 2-202 (202)
5 cd07603 BAR_ACAPs The Bin/Amph 100.0 1.1E-38 2.4E-43 311.8 23.7 200 13-216 1-200 (200)
6 cd07601 BAR_APPL The Bin/Amphi 100.0 4.6E-38 1E-42 307.8 25.4 208 13-224 1-215 (215)
7 cd07602 BAR_RhoGAP_OPHN1-like 100.0 3.3E-38 7.2E-43 306.2 23.5 201 13-216 1-207 (207)
8 cd07636 BAR_GRAF The Bin/Amphi 100.0 3.9E-37 8.4E-42 297.8 23.5 200 13-215 1-206 (207)
9 cd07637 BAR_ACAP3 The Bin/Amph 100.0 8E-37 1.7E-41 297.8 23.4 199 13-216 1-200 (200)
10 cd07638 BAR_ACAP2 The Bin/Amph 100.0 9.3E-37 2E-41 295.4 23.7 199 13-216 1-200 (200)
11 cd07633 BAR_OPHN1 The Bin/Amph 100.0 9.3E-37 2E-41 290.6 22.7 201 13-216 1-207 (207)
12 cd07634 BAR_GAP10-like The Bin 100.0 1E-36 2.2E-41 294.4 22.4 201 13-216 1-207 (207)
13 cd07639 BAR_ACAP1 The Bin/Amph 100.0 1.3E-36 2.9E-41 293.9 23.1 199 13-216 1-200 (200)
14 KOG0703 Predicted GTPase-activ 100.0 8.8E-39 1.9E-43 319.2 7.9 118 497-641 10-127 (287)
15 cd07635 BAR_GRAF2 The Bin/Amph 100.0 7.9E-36 1.7E-40 288.7 24.1 201 13-215 1-206 (207)
16 PF01412 ArfGap: Putative GTPa 100.0 2.3E-36 5E-41 271.6 7.5 115 501-640 2-116 (116)
17 cd07631 BAR_APPL1 The Bin/Amph 100.0 9.4E-34 2E-38 272.1 24.6 208 13-224 1-215 (215)
18 smart00105 ArfGap Putative GTP 100.0 2.1E-35 4.5E-40 263.5 10.2 111 510-644 1-111 (112)
19 cd07632 BAR_APPL2 The Bin/Amph 100.0 8.9E-33 1.9E-37 262.7 23.8 206 13-222 1-213 (215)
20 cd07641 BAR_ASAP1 The Bin/Amph 100.0 9.8E-33 2.1E-37 263.5 23.1 204 13-219 1-215 (215)
21 cd07604 BAR_ASAPs The Bin/Amph 100.0 6.5E-32 1.4E-36 266.2 24.7 206 13-219 1-215 (215)
22 cd07642 BAR_ASAP2 The Bin/Amph 100.0 2.2E-30 4.7E-35 249.4 23.9 203 13-219 1-215 (215)
23 cd07640 BAR_ASAP3 The Bin/Amph 100.0 7E-30 1.5E-34 240.0 22.2 206 13-219 1-213 (213)
24 PLN03119 putative ADP-ribosyla 100.0 2.4E-31 5.2E-36 282.3 10.2 123 493-642 4-126 (648)
25 COG5347 GTPase-activating prot 100.0 2.2E-31 4.8E-36 274.7 9.5 119 499-640 7-125 (319)
26 PLN03131 hypothetical protein; 100.0 4.9E-31 1.1E-35 282.0 9.5 123 494-643 5-127 (705)
27 cd07609 BAR_SIP3_fungi The Bin 100.0 8.8E-29 1.9E-33 243.3 19.4 209 14-224 1-212 (214)
28 KOG1117 Rho- and Arf-GTPase ac 99.9 6.5E-27 1.4E-31 255.9 8.8 217 290-642 189-405 (1186)
29 PLN03114 ADP-ribosylation fact 99.9 1.1E-25 2.3E-30 228.3 9.4 86 500-587 10-95 (395)
30 KOG0706 Predicted GTPase-activ 99.9 1.8E-25 4E-30 232.4 6.7 86 500-587 11-96 (454)
31 KOG0704 ADP-ribosylation facto 99.9 8.1E-26 1.7E-30 227.4 3.7 86 500-587 7-92 (386)
32 KOG0818 GTPase-activating prot 99.9 1.1E-25 2.3E-30 234.5 4.0 123 509-649 5-128 (669)
33 cd07307 BAR The Bin/Amphiphysi 99.8 2.7E-18 5.9E-23 167.2 23.3 191 23-214 2-193 (194)
34 cd01233 Unc104 Unc-104 pleckst 99.8 7E-18 1.5E-22 148.0 11.6 95 293-428 2-99 (100)
35 cd01251 PH_centaurin_alpha Cen 99.7 1E-17 2.2E-22 147.6 11.5 94 295-428 1-101 (103)
36 cd01264 PH_melted Melted pleck 99.7 1.6E-17 3.5E-22 144.0 10.5 93 295-426 2-100 (101)
37 cd01236 PH_outspread Outspread 99.7 3.1E-17 6.7E-22 143.6 10.6 92 295-424 1-101 (104)
38 cd01265 PH_PARIS-1 PARIS-1 ple 99.7 7.2E-17 1.6E-21 140.1 10.8 90 296-426 2-93 (95)
39 cd01238 PH_Tec Tec pleckstrin 99.7 1.4E-16 3.1E-21 141.1 10.4 95 294-426 1-106 (106)
40 cd01247 PH_GPBP Goodpasture an 99.7 4.3E-16 9.3E-21 133.9 11.3 88 296-425 2-90 (91)
41 smart00721 BAR BAR domain. 99.7 1.4E-14 2.9E-19 147.3 23.6 201 16-217 29-238 (239)
42 cd01260 PH_CNK Connector enhan 99.7 5.3E-16 1.1E-20 135.1 10.7 91 295-426 2-96 (96)
43 cd01250 PH_centaurin Centaurin 99.7 5.9E-16 1.3E-20 133.8 10.4 94 295-426 1-94 (94)
44 cd01257 PH_IRS Insulin recepto 99.6 1.7E-15 3.7E-20 132.1 11.1 94 293-425 2-100 (101)
45 cd01249 PH_oligophrenin Oligop 99.6 6.2E-16 1.3E-20 133.2 8.0 99 295-425 1-103 (104)
46 cd01235 PH_SETbf Set binding f 99.6 2.8E-15 6.2E-20 131.6 11.2 92 296-427 2-101 (101)
47 PF03114 BAR: BAR domain; Int 99.6 3.1E-13 6.8E-18 135.6 26.0 195 15-217 27-229 (229)
48 cd01252 PH_cytohesin Cytohesin 99.6 7.6E-15 1.6E-19 134.2 12.0 93 294-428 1-114 (125)
49 cd01245 PH_RasGAP_CG5898 RAS G 99.6 3.9E-15 8.4E-20 128.7 9.1 91 295-425 1-97 (98)
50 cd07594 BAR_Endophilin_B The B 99.6 5.3E-13 1.2E-17 133.0 25.0 193 15-214 18-227 (229)
51 cd01266 PH_Gab Gab (Grb2-assoc 99.6 1.2E-14 2.6E-19 129.3 11.1 92 296-426 2-107 (108)
52 cd01246 PH_oxysterol_bp Oxyste 99.6 3E-14 6.4E-19 122.3 10.8 90 295-426 1-91 (91)
53 cd07593 BAR_MUG137_fungi The B 99.5 6.3E-12 1.4E-16 124.3 26.0 189 16-214 9-206 (215)
54 cd01219 PH_FGD FGD (faciogenit 99.5 9.7E-14 2.1E-18 121.9 11.4 99 293-428 2-100 (101)
55 cd01241 PH_Akt Akt pleckstrin 99.5 9E-14 1.9E-18 122.3 11.0 95 293-427 1-102 (102)
56 PF00169 PH: PH domain; Inter 99.5 2.6E-13 5.5E-18 118.2 13.1 97 293-427 1-103 (104)
57 cd07615 BAR_Endophilin_A3 The 99.5 9.9E-12 2.2E-16 122.8 25.3 189 15-218 8-218 (223)
58 cd07616 BAR_Endophilin_B1 The 99.5 8.3E-12 1.8E-16 123.9 24.4 192 15-214 18-227 (229)
59 cd07614 BAR_Endophilin_A2 The 99.5 1.1E-11 2.5E-16 122.6 25.0 188 15-217 8-217 (223)
60 cd07592 BAR_Endophilin_A The B 99.5 1.4E-11 3E-16 122.7 24.9 188 15-217 8-217 (223)
61 cd01244 PH_RasGAP_CG9209 RAS_G 99.5 1.8E-13 3.9E-18 118.7 9.9 89 297-426 5-98 (98)
62 cd07595 BAR_RhoGAP_Rich-like T 99.5 2.6E-11 5.6E-16 122.7 25.8 203 15-221 16-229 (244)
63 cd07608 BAR_ArfGAP_fungi The B 99.5 8.3E-12 1.8E-16 119.6 20.7 180 14-206 1-182 (192)
64 cd07613 BAR_Endophilin_A1 The 99.4 5E-11 1.1E-15 117.8 24.6 188 15-218 8-218 (223)
65 KOG0702 Predicted GTPase-activ 99.4 1.4E-13 3.1E-18 145.4 6.8 123 496-643 8-132 (524)
66 cd07617 BAR_Endophilin_B2 The 99.4 5.8E-11 1.3E-15 116.7 24.0 183 15-214 18-218 (220)
67 cd01220 PH_CDEP Chondrocyte-de 99.4 2.8E-12 6.1E-17 111.8 11.9 97 293-428 2-98 (99)
68 PF15409 PH_8: Pleckstrin homo 99.4 2.7E-12 5.9E-17 108.3 10.0 87 297-426 1-88 (89)
69 KOG0930 Guanine nucleotide exc 99.4 1.5E-12 3.3E-17 128.1 9.4 95 293-428 260-376 (395)
70 cd07618 BAR_Rich1 The Bin/Amph 99.4 3.8E-10 8.2E-15 113.4 26.6 202 15-221 16-231 (246)
71 PF15413 PH_11: Pleckstrin hom 99.4 4.1E-12 9E-17 113.6 11.3 110 295-426 1-112 (112)
72 cd01263 PH_anillin Anillin Ple 99.3 5.5E-12 1.2E-16 113.5 9.4 95 295-426 3-122 (122)
73 cd01253 PH_beta_spectrin Beta- 99.3 1E-11 2.2E-16 109.7 10.5 84 306-425 19-103 (104)
74 cd07619 BAR_Rich2 The Bin/Amph 99.3 1.4E-09 3E-14 109.1 26.4 195 15-221 16-233 (248)
75 cd01230 PH_EFA6 EFA6 Pleckstri 99.3 4E-11 8.6E-16 107.4 12.1 102 295-429 2-113 (117)
76 cd01254 PH_PLD Phospholipase D 99.2 4.8E-11 1E-15 108.3 10.4 36 391-426 86-121 (121)
77 cd07600 BAR_Gvp36 The Bin/Amph 99.2 9.3E-10 2E-14 110.9 20.6 198 9-214 32-240 (242)
78 cd01237 Unc112 Unc-112 pleckst 99.2 4.5E-11 9.8E-16 103.6 9.1 82 307-426 17-102 (106)
79 smart00233 PH Pleckstrin homol 99.2 2.9E-10 6.3E-15 97.4 12.6 97 294-427 2-101 (102)
80 KOG4424 Predicted Rho/Rac guan 99.1 2.5E-09 5.4E-14 115.7 19.1 109 291-436 270-378 (623)
81 cd07590 BAR_Bin3 The Bin/Amphi 99.1 3.3E-08 7.1E-13 98.7 25.0 199 16-220 13-216 (225)
82 KOG3725 SH3 domain protein SH3 99.1 6.9E-09 1.5E-13 101.3 19.0 190 21-212 44-258 (375)
83 cd07620 BAR_SH3BP1 The Bin/Amp 99.1 4.6E-08 1E-12 97.6 24.6 191 16-218 17-239 (257)
84 PF15410 PH_9: Pleckstrin homo 99.1 7.5E-10 1.6E-14 100.2 9.5 106 295-426 2-117 (119)
85 cd00821 PH Pleckstrin homology 99.0 1.4E-09 3E-14 92.2 9.8 95 295-426 1-96 (96)
86 cd01218 PH_phafin2 Phafin2 Pl 99.0 3.4E-09 7.4E-14 92.9 11.8 100 293-432 4-103 (104)
87 KOG1118 Lysophosphatidic acid 99.0 2.4E-07 5.1E-12 93.2 23.8 184 15-214 27-233 (366)
88 cd07591 BAR_Rvs161p The Bin/Am 98.9 4.4E-07 9.6E-12 91.1 25.4 197 16-218 13-213 (224)
89 KOG0690 Serine/threonine prote 98.9 2.1E-09 4.5E-14 109.4 8.1 105 291-432 13-121 (516)
90 cd00011 BAR_Arfaptin_like The 98.9 1.1E-06 2.4E-11 85.7 24.0 189 18-212 3-200 (203)
91 cd00900 PH-like Pleckstrin hom 98.9 2.1E-08 4.6E-13 85.5 10.8 92 296-426 2-99 (99)
92 cd07588 BAR_Amphiphysin The Bi 98.8 2E-06 4.3E-11 85.2 25.6 193 16-219 14-209 (211)
93 cd07599 BAR_Rvs167p The Bin/Am 98.8 2.6E-06 5.7E-11 85.4 25.9 196 15-212 3-212 (216)
94 PF06456 Arfaptin: Arfaptin-li 98.8 2.5E-06 5.4E-11 85.7 24.5 187 18-209 34-229 (229)
95 PF08397 IMD: IRSp53/MIM homol 98.8 1.4E-06 3.1E-11 87.4 22.3 187 23-212 5-204 (219)
96 cd01256 PH_dynamin Dynamin ple 98.8 4.4E-08 9.6E-13 82.5 9.4 93 293-426 1-104 (110)
97 cd07598 BAR_FAM92 The Bin/Amph 98.8 5.1E-06 1.1E-10 82.5 25.7 189 15-212 5-198 (211)
98 PF10455 BAR_2: Bin/amphiphysi 98.8 1.1E-06 2.4E-11 90.3 21.4 137 75-216 151-287 (289)
99 cd07660 BAR_Arfaptin The Bin/A 98.8 2.5E-06 5.5E-11 82.9 22.4 187 18-211 3-196 (201)
100 cd01261 PH_SOS Son of Sevenles 98.7 1.8E-07 3.9E-12 83.0 11.0 107 292-429 3-111 (112)
101 cd07611 BAR_Amphiphysin_I_II T 98.7 1.8E-05 3.8E-10 77.9 25.8 191 17-219 15-209 (211)
102 cd07612 BAR_Bin2 The Bin/Amphi 98.6 2E-05 4.2E-10 77.6 25.1 191 18-219 16-209 (211)
103 cd07659 BAR_PICK1 The Bin/Amph 98.6 1.4E-05 2.9E-10 77.2 23.1 186 21-211 9-209 (215)
104 cd01234 PH_CADPS CADPS (Ca2+-d 98.5 3.2E-07 7E-12 78.0 6.0 35 393-427 76-110 (117)
105 cd07596 BAR_SNX The Bin/Amphip 98.4 0.00012 2.7E-09 72.9 25.0 192 12-213 9-216 (218)
106 cd07628 BAR_Atg24p The Bin/Amp 98.4 0.00015 3.2E-09 70.9 23.8 177 18-214 8-184 (185)
107 cd07605 I-BAR_IMD Inverse (I)- 98.4 0.00015 3.3E-09 72.4 24.0 185 29-214 21-217 (223)
108 PF09325 Vps5: Vps5 C terminal 98.4 0.00018 4E-09 72.9 25.3 190 20-214 30-235 (236)
109 cd01259 PH_Apbb1ip Apbb1ip (Am 98.4 1.2E-06 2.6E-11 76.3 7.7 97 295-427 2-108 (114)
110 KOG1090 Predicted dual-specifi 98.4 2.2E-07 4.9E-12 105.1 3.6 100 288-427 1629-1731(1732)
111 cd07624 BAR_SNX7_30 The Bin/Am 98.3 0.00016 3.4E-09 71.7 22.3 180 13-214 20-199 (200)
112 cd07661 BAR_ICA69 The Bin/Amph 98.3 0.00028 6E-09 67.8 22.5 190 18-213 3-201 (204)
113 PF14593 PH_3: PH domain; PDB: 98.2 1.1E-05 2.5E-10 70.6 11.1 92 290-430 10-102 (104)
114 cd07589 BAR_DNMBP The Bin/Amph 98.2 0.0004 8.6E-09 68.5 22.4 178 16-209 7-186 (195)
115 cd01242 PH_ROK Rok (Rho- assoc 98.2 1.4E-05 3.1E-10 69.6 10.2 105 295-428 2-111 (112)
116 cd07623 BAR_SNX1_2 The Bin/Amp 98.2 0.0009 1.9E-08 67.5 24.2 188 22-214 20-221 (224)
117 cd07664 BAR_SNX2 The Bin/Amphi 98.1 0.0011 2.4E-08 67.0 24.4 188 22-214 30-231 (234)
118 cd07627 BAR_Vps5p The Bin/Amph 98.1 0.00077 1.7E-08 67.6 23.2 187 14-212 11-213 (216)
119 cd01243 PH_MRCK MRCK (myotonic 98.1 3.2E-05 6.8E-10 68.5 10.6 108 294-426 3-118 (122)
120 KOG3771 Amphiphysin [Intracell 98.1 0.00058 1.3E-08 73.5 21.9 187 25-221 41-229 (460)
121 PF06730 FAM92: FAM92 protein; 98.0 0.0045 9.8E-08 61.0 25.2 190 12-211 2-204 (219)
122 cd01239 PH_PKD Protein kinase 98.0 1.8E-05 4E-10 69.3 7.6 33 294-327 1-33 (117)
123 cd07665 BAR_SNX1 The Bin/Amphi 98.0 0.003 6.5E-08 63.7 24.1 188 21-213 29-230 (234)
124 KOG3640 Actin binding protein 98.0 1.2E-05 2.5E-10 91.7 7.0 101 292-429 989-1108(1116)
125 cd07622 BAR_SNX4 The Bin/Amphi 98.0 0.0045 9.8E-08 61.2 24.5 177 22-214 22-198 (201)
126 cd07646 I-BAR_IMD_IRSp53 Inver 97.9 0.0056 1.2E-07 60.5 22.6 195 16-211 10-217 (232)
127 PTZ00267 NIMA-related protein 97.9 3.9E-05 8.5E-10 86.3 8.7 100 292-427 376-476 (478)
128 cd07629 BAR_Atg20p The Bin/Amp 97.8 0.0071 1.5E-07 59.2 23.3 176 18-213 8-185 (187)
129 KOG3751 Growth factor receptor 97.8 5.5E-05 1.2E-09 81.6 7.3 39 290-330 314-352 (622)
130 KOG0932 Guanine nucleotide exc 97.7 2.8E-05 6E-10 84.2 4.3 112 288-433 501-622 (774)
131 KOG2059 Ras GTPase-activating 97.7 5E-05 1.1E-09 84.5 6.3 97 292-427 564-664 (800)
132 cd07667 BAR_SNX30 The Bin/Amph 97.7 0.013 2.9E-07 59.0 23.0 180 21-212 58-237 (240)
133 cd01226 PH_exo84 Exocyst compl 97.7 0.00042 9E-09 60.0 10.3 40 388-427 59-98 (100)
134 cd07644 I-BAR_IMD_BAIAP2L2 Inv 97.7 0.018 3.8E-07 55.9 22.1 198 12-211 4-206 (215)
135 cd07630 BAR_SNX_like The Bin/A 97.7 0.016 3.5E-07 57.1 22.7 180 24-210 14-193 (198)
136 cd07625 BAR_Vps17p The Bin/Amp 97.7 0.035 7.5E-07 55.9 25.1 191 10-212 21-227 (230)
137 cd01222 PH_clg Clg (common-sit 97.6 0.00071 1.5E-08 58.7 10.8 34 394-427 59-95 (97)
138 cd01224 PH_Collybistin Collybi 97.6 0.001 2.3E-08 58.4 11.2 96 293-425 2-105 (109)
139 cd01258 PH_syntrophin Syntroph 97.6 0.00034 7.3E-09 61.6 8.1 34 392-425 72-107 (108)
140 KOG3876 Arfaptin and related p 97.6 0.0092 2E-07 59.4 18.7 175 18-202 126-310 (341)
141 cd07662 BAR_SNX6 The Bin/Amphi 97.5 0.038 8.3E-07 54.6 22.9 195 4-211 16-212 (218)
142 cd07621 BAR_SNX5_6 The Bin/Amp 97.5 0.046 9.9E-07 54.6 23.7 180 23-211 33-213 (219)
143 cd07663 BAR_SNX5 The Bin/Amphi 97.5 0.059 1.3E-06 53.6 23.8 196 3-211 15-212 (218)
144 cd07653 F-BAR_CIP4-like The F- 97.5 0.081 1.8E-06 54.2 25.8 160 21-181 5-193 (251)
145 cd07645 I-BAR_IMD_BAIAP2L1 Inv 97.4 0.11 2.5E-06 51.0 23.6 198 13-211 5-215 (226)
146 cd01240 PH_beta-ARK Beta adren 97.4 0.00019 4.2E-09 62.0 3.8 96 293-428 3-99 (116)
147 cd01262 PH_PDK1 3-Phosphoinosi 97.3 0.0015 3.3E-08 55.1 8.2 86 294-426 2-87 (89)
148 PTZ00283 serine/threonine prot 97.3 0.0037 8E-08 70.7 14.2 37 392-428 453-490 (496)
149 cd07643 I-BAR_IMD_MIM Inverse 97.2 0.1 2.2E-06 51.8 21.8 109 29-137 23-136 (231)
150 cd07666 BAR_SNX7 The Bin/Amphi 97.1 0.26 5.6E-06 50.1 24.4 180 21-212 61-240 (243)
151 PF12814 Mcp5_PH: Meiotic cell 97.1 0.0053 1.1E-07 55.9 11.1 36 393-428 87-122 (123)
152 KOG0248 Cytoplasmic protein Ma 97.1 0.00047 1E-08 76.5 4.6 98 291-430 247-344 (936)
153 cd01221 PH_ephexin Ephexin Ple 97.0 0.005 1.1E-07 55.7 9.8 32 392-423 81-118 (125)
154 cd07648 F-BAR_FCHO The F-BAR ( 97.0 0.38 8.2E-06 49.7 25.3 151 24-181 8-175 (261)
155 cd07674 F-BAR_FCHO1 The F-BAR 97.0 0.13 2.8E-06 53.2 21.5 92 24-116 8-99 (261)
156 cd07607 BAR_SH3P_plant The Bin 97.0 0.24 5.3E-06 47.2 20.9 181 30-213 17-207 (209)
157 cd07651 F-BAR_PombeCdc15_like 97.0 0.46 9.9E-06 48.3 25.2 96 24-119 8-103 (236)
158 KOG3723 PH domain protein Melt 97.0 0.00048 1E-08 75.0 3.4 41 393-433 802-842 (851)
159 cd01223 PH_Vav Vav pleckstrin 96.9 0.0063 1.4E-07 54.1 9.4 37 393-429 75-113 (116)
160 PLN02866 phospholipase D 96.8 0.0068 1.5E-07 71.8 11.4 37 392-428 272-308 (1068)
161 KOG0521 Putative GTPase activa 96.8 0.1 2.2E-06 61.7 21.0 74 507-584 625-699 (785)
162 cd07610 FCH_F-BAR The Extended 96.8 0.39 8.5E-06 46.8 21.7 151 25-179 4-156 (191)
163 cd07658 F-BAR_NOSTRIN The F-BA 96.7 0.7 1.5E-05 47.1 23.7 108 25-134 9-120 (239)
164 PLN00188 enhanced disease resi 96.7 0.0069 1.5E-07 69.1 9.7 37 395-431 74-113 (719)
165 cd07649 F-BAR_GAS7 The F-BAR ( 96.6 0.99 2.1E-05 45.8 27.4 107 26-132 10-116 (233)
166 cd07626 BAR_SNX9_like The Bin/ 96.6 0.85 1.8E-05 45.0 22.3 182 12-210 9-193 (199)
167 cd07676 F-BAR_FBP17 The F-BAR 96.5 1.2 2.5E-05 45.9 27.0 160 20-183 4-197 (253)
168 cd07597 BAR_SNX8 The Bin/Amphi 96.5 1.1 2.4E-05 45.8 23.6 135 9-144 17-166 (246)
169 KOG1739 Serine/threonine prote 96.4 0.0035 7.6E-08 67.4 4.6 94 293-428 24-117 (611)
170 KOG3651 Protein kinase C, alph 96.4 0.23 4.9E-06 50.8 17.2 190 20-215 138-343 (429)
171 cd07650 F-BAR_Syp1p_like The F 96.4 0.74 1.6E-05 46.6 21.2 165 21-190 5-179 (228)
172 cd07637 BAR_ACAP3 The Bin/Amph 96.4 0.44 9.4E-06 47.1 18.8 181 22-223 3-186 (200)
173 cd07638 BAR_ACAP2 The Bin/Amph 96.1 0.9 1.9E-05 44.8 19.5 46 22-67 3-48 (200)
174 cd07647 F-BAR_PSTPIP The F-BAR 96.1 1.9 4.2E-05 43.9 26.7 155 24-179 8-183 (239)
175 cd01232 PH_TRIO Trio pleckstri 96.1 0.087 1.9E-06 47.2 11.1 35 394-428 74-113 (114)
176 cd01225 PH_Cool_Pix Cool (clon 95.9 0.044 9.6E-07 48.1 8.2 53 375-427 56-109 (111)
177 cd07655 F-BAR_PACSIN The F-BAR 95.9 2.6 5.6E-05 43.5 24.1 38 76-113 64-101 (258)
178 cd07673 F-BAR_FCHO2 The F-BAR 95.8 2.9 6.2E-05 43.4 26.3 96 25-121 16-111 (269)
179 cd07639 BAR_ACAP1 The Bin/Amph 95.7 1.4 2.9E-05 43.6 18.5 153 22-211 3-159 (200)
180 cd07635 BAR_GRAF2 The Bin/Amph 95.6 1.3 2.8E-05 43.8 18.1 45 21-65 2-46 (207)
181 cd07657 F-BAR_Fes_Fer The F-BA 95.4 3.6 7.7E-05 41.9 26.9 107 29-144 20-154 (237)
182 cd07675 F-BAR_FNBP1L The F-BAR 95.3 4 8.6E-05 41.8 27.7 159 21-180 5-193 (252)
183 cd07671 F-BAR_PSTPIP1 The F-BA 95.3 3.9 8.5E-05 41.7 23.9 101 28-129 12-112 (242)
184 KOG3891 Secretory vesicle-asso 95.3 4.5 9.9E-05 42.4 22.2 142 75-218 106-254 (436)
185 KOG2273 Membrane coat complex 95.3 2.6 5.5E-05 47.9 22.1 193 18-214 278-496 (503)
186 cd07636 BAR_GRAF The Bin/Amphi 95.3 2.1 4.5E-05 42.5 18.3 160 21-212 2-167 (207)
187 PF10456 BAR_3_WASP_bdg: WASP- 95.2 1.7 3.8E-05 44.0 18.1 188 14-211 34-231 (237)
188 cd07652 F-BAR_Rgd1 The F-BAR ( 95.2 4.1 8.8E-05 41.4 21.4 155 25-184 9-193 (234)
189 KOG3531 Rho guanine nucleotide 95.0 0.0084 1.8E-07 68.4 0.7 92 294-426 925-1018(1036)
190 PF15406 PH_6: Pleckstrin homo 94.9 0.066 1.4E-06 46.7 5.9 30 395-424 81-110 (112)
191 cd07680 F-BAR_PACSIN1 The F-BA 94.9 5.4 0.00012 41.1 25.7 85 26-110 10-98 (258)
192 cd01228 PH_BCR-related BCR (br 94.9 0.15 3.3E-06 43.6 7.8 27 400-426 67-93 (96)
193 KOG1117 Rho- and Arf-GTPase ac 94.6 0.028 6E-07 64.5 3.8 94 291-429 85-179 (1186)
194 cd07681 F-BAR_PACSIN3 The F-BA 94.6 6.4 0.00014 40.5 24.8 85 29-113 13-101 (258)
195 cd07685 F-BAR_Fes The F-BAR (F 94.5 5.9 0.00013 39.8 23.7 66 116-184 131-196 (237)
196 cd07603 BAR_ACAPs The Bin/Amph 94.4 5.7 0.00012 39.3 19.2 115 21-139 2-117 (200)
197 cd07669 BAR_SNX33 The Bin/Amph 94.2 5.3 0.00012 39.3 17.9 185 16-210 7-201 (207)
198 cd07668 BAR_SNX9 The Bin/Amphi 93.7 5.6 0.00012 39.2 17.0 186 16-211 7-202 (210)
199 PF03114 BAR: BAR domain; Int 93.4 8.2 0.00018 38.0 18.6 41 19-59 24-64 (229)
200 cd07672 F-BAR_PSTPIP2 The F-BA 93.3 11 0.00023 38.5 24.2 67 50-117 34-101 (240)
201 PF15404 PH_4: Pleckstrin homo 93.1 0.47 1E-05 46.1 8.5 25 402-426 160-184 (185)
202 KOG3543 Ca2+-dependent activat 92.9 0.037 8E-07 61.2 0.7 99 294-433 465-571 (1218)
203 cd01227 PH_Dbs Dbs (DBL's big 92.8 0.98 2.1E-05 41.6 9.7 37 394-430 80-118 (133)
204 cd07670 BAR_SNX18 The Bin/Amph 92.7 11 0.00024 37.1 19.5 184 16-209 7-200 (207)
205 KOG2070 Guanine nucleotide exc 92.6 18 0.00039 39.9 20.1 48 378-425 356-404 (661)
206 KOG2996 Rho guanine nucleotide 92.3 23 0.00051 39.9 20.9 40 391-430 473-514 (865)
207 KOG1451 Oligophrenin-1 and rel 92.0 25 0.00055 39.7 22.9 186 15-246 35-257 (812)
208 smart00721 BAR BAR domain. 91.8 15 0.00033 36.8 20.0 122 20-142 26-153 (239)
209 cd07656 F-BAR_srGAP The F-BAR 91.8 17 0.00036 37.1 20.1 117 16-141 7-156 (241)
210 cd01231 PH_Lnk LNK-family Plec 91.6 0.25 5.5E-06 42.5 4.0 36 390-425 70-106 (107)
211 cd07602 BAR_RhoGAP_OPHN1-like 91.4 16 0.00035 36.2 18.6 158 21-210 2-165 (207)
212 KOG1737 Oxysterol-binding prot 91.2 0.14 3.1E-06 59.7 2.9 96 294-433 78-174 (799)
213 KOG2856 Adaptor protein PACSIN 90.0 29 0.00064 36.9 21.0 140 78-225 75-245 (472)
214 cd07604 BAR_ASAPs The Bin/Amph 89.8 23 0.00051 35.4 20.1 116 22-139 3-120 (215)
215 KOG3531 Rho guanine nucleotide 89.7 0.5 1.1E-05 54.6 5.4 45 392-436 809-853 (1036)
216 KOG0994 Extracellular matrix g 88.9 49 0.0011 40.5 20.6 119 14-133 1542-1671(1758)
217 cd07631 BAR_APPL1 The Bin/Amph 88.8 27 0.00058 34.8 23.0 120 77-209 38-163 (215)
218 cd01248 PH_PLC Phospholipase C 87.2 2.7 5.9E-05 37.5 7.6 34 392-425 77-114 (115)
219 cd07601 BAR_APPL The Bin/Amphi 86.3 38 0.00083 33.9 23.0 125 22-179 3-128 (215)
220 cd07590 BAR_Bin3 The Bin/Amphi 86.2 40 0.00087 34.0 21.5 172 23-210 13-191 (225)
221 PF15408 PH_7: Pleckstrin homo 85.8 0.34 7.3E-06 40.3 0.8 32 395-426 64-96 (104)
222 PF08458 PH_2: Plant pleckstri 85.6 7.7 0.00017 34.4 9.2 38 391-428 67-104 (110)
223 cd07679 F-BAR_PACSIN2 The F-BA 85.6 47 0.001 34.2 24.8 83 28-110 12-98 (258)
224 cd07634 BAR_GAP10-like The Bin 85.3 42 0.00091 33.4 18.8 157 23-211 4-166 (207)
225 KOG3523 Putative guanine nucle 83.9 56 0.0012 37.3 17.0 33 391-423 552-590 (695)
226 cd07633 BAR_OPHN1 The Bin/Amph 83.8 47 0.001 32.8 19.2 156 23-210 4-165 (207)
227 cd07307 BAR The Bin/Amphiphysi 83.4 41 0.00088 31.7 20.6 36 104-139 74-110 (194)
228 PF04740 LXG: LXG domain of WX 82.1 44 0.00096 32.7 14.5 23 23-45 5-27 (204)
229 PF15405 PH_5: Pleckstrin homo 79.3 2.7 5.9E-05 38.8 4.3 33 394-426 99-134 (135)
230 cd07654 F-BAR_FCHSD The F-BAR 78.4 88 0.0019 32.4 22.9 93 19-111 3-105 (264)
231 PF04129 Vps52: Vps52 / Sac2 f 78.1 1.3E+02 0.0028 34.2 22.1 193 13-222 3-202 (508)
232 cd07641 BAR_ASAP1 The Bin/Amph 76.5 85 0.0018 31.2 17.4 43 23-65 4-46 (215)
233 PRK04778 septation ring format 75.7 1.6E+02 0.0035 34.0 27.2 206 13-227 104-330 (569)
234 cd07648 F-BAR_FCHO The F-BAR ( 75.6 1E+02 0.0022 31.7 21.5 67 113-182 120-197 (261)
235 cd07649 F-BAR_GAS7 The F-BAR ( 74.4 1E+02 0.0022 31.2 18.8 32 108-139 113-144 (233)
236 PF06160 EzrA: Septation ring 74.3 1.7E+02 0.0037 33.7 27.2 103 120-227 223-326 (560)
237 cd07606 BAR_SFC_plant The Bin/ 73.5 1E+02 0.0022 30.6 21.4 151 22-210 2-161 (202)
238 cd07678 F-BAR_FCHSD1 The F-BAR 73.1 1.2E+02 0.0026 31.4 25.1 35 107-141 121-155 (263)
239 KOG3771 Amphiphysin [Intracell 72.3 1.6E+02 0.0036 32.6 18.1 24 186-209 179-202 (460)
240 PF00643 zf-B_box: B-box zinc 71.5 3 6.6E-05 29.8 2.0 33 512-544 3-36 (42)
241 KOG0994 Extracellular matrix g 70.2 2.8E+02 0.0061 34.4 22.8 11 52-62 1474-1484(1758)
242 KOG3520 Predicted guanine nucl 69.8 2.9E+02 0.0063 34.4 18.9 43 392-434 683-728 (1167)
243 cd07598 BAR_FAM92 The Bin/Amph 69.7 1.2E+02 0.0027 30.2 21.8 44 20-63 3-46 (211)
244 cd07632 BAR_APPL2 The Bin/Amph 69.6 1.2E+02 0.0027 30.1 20.7 112 24-139 5-121 (215)
245 cd07651 F-BAR_PombeCdc15_like 68.4 1.4E+02 0.003 30.2 20.3 29 14-42 23-51 (236)
246 KOG3549 Syntrophins (type gamm 66.6 16 0.00035 38.5 6.7 40 392-431 350-390 (505)
247 KOG4240 Multidomain protein, c 64.0 2.7E+02 0.0059 34.2 16.9 35 396-430 895-931 (1025)
248 KOG2398 Predicted proline-seri 61.1 3.2E+02 0.007 31.9 18.1 178 11-217 44-221 (611)
249 PRK12495 hypothetical protein; 59.8 4 8.7E-05 40.3 0.9 29 509-541 39-67 (226)
250 KOG0248 Cytoplasmic protein Ma 59.6 3.3 7.1E-05 47.2 0.3 101 288-433 254-354 (936)
251 KOG4807 F-actin binding protei 58.6 0.16 3.4E-06 53.5 -9.5 52 375-427 63-114 (593)
252 cd07663 BAR_SNX5 The Bin/Amphi 57.9 2.1E+02 0.0046 28.7 16.6 34 13-46 29-62 (218)
253 PF13805 Pil1: Eisosome compon 57.9 2.4E+02 0.0052 29.3 17.8 95 25-125 54-150 (271)
254 PF01286 XPA_N: XPA protein N- 56.3 3.7 8E-05 28.4 -0.0 27 513-539 4-31 (34)
255 cd01255 PH_TIAM TIAM Pleckstri 54.2 39 0.00085 31.3 6.1 41 391-431 110-158 (160)
256 PF11781 RRN7: RNA polymerase 53.8 9 0.0002 26.8 1.6 26 511-539 7-32 (36)
257 cd07686 F-BAR_Fer The F-BAR (F 53.4 2.6E+02 0.0056 28.4 26.3 25 118-142 129-153 (234)
258 KOG1729 FYVE finger containing 52.1 9.4 0.0002 39.9 2.2 45 389-433 102-146 (288)
259 PRK00085 recO DNA repair prote 51.7 9.5 0.00021 38.7 2.1 32 508-539 145-177 (247)
260 KOG3551 Syntrophins (type beta 51.5 21 0.00047 38.2 4.6 38 394-431 236-275 (506)
261 cd05135 RasGAP_RASAL Ras GTPas 50.5 19 0.00041 38.6 4.2 26 292-317 302-332 (333)
262 cd07599 BAR_Rvs167p The Bin/Am 50.2 2.7E+02 0.0058 27.6 20.4 150 21-173 2-166 (216)
263 TIGR00613 reco DNA repair prot 49.2 11 0.00024 38.1 2.2 35 507-541 142-177 (241)
264 KOG1170 Diacylglycerol kinase 49.1 0.99 2.1E-05 52.1 -5.9 37 392-428 59-95 (1099)
265 PF08271 TF_Zn_Ribbon: TFIIB z 48.6 11 0.00023 27.3 1.4 25 514-539 2-26 (43)
266 cd05394 RasGAP_RASA2 RASA2 (or 47.8 4.8 0.0001 42.5 -0.8 27 292-318 282-312 (313)
267 cd07595 BAR_RhoGAP_Rich-like T 47.8 3.2E+02 0.007 27.9 18.2 29 19-47 13-41 (244)
268 TIGR02419 C4_traR_proteo phage 47.3 7.1 0.00015 31.0 0.3 33 509-542 28-62 (63)
269 KOG4460 Nuclear pore complex, 47.2 4.1E+02 0.0088 30.3 13.5 78 117-196 567-644 (741)
270 TIGR01834 PHA_synth_III_E poly 47.0 3.8E+02 0.0083 28.5 20.5 20 159-178 185-204 (320)
271 cd07677 F-BAR_FCHSD2 The F-BAR 46.6 3.5E+02 0.0076 27.9 20.6 89 111-199 126-223 (260)
272 KOG4407 Predicted Rho GTPase-a 46.3 2.1 4.5E-05 51.9 -4.0 38 390-427 1003-1041(1973)
273 PF09712 PHA_synth_III_E: Poly 46.2 3.8E+02 0.0082 28.2 24.4 56 128-183 137-192 (293)
274 KOG3551 Syntrophins (type beta 45.7 26 0.00057 37.6 4.2 106 292-432 291-406 (506)
275 KOG0592 3-phosphoinositide-dep 45.2 37 0.00079 38.4 5.4 88 291-426 449-536 (604)
276 KOG3362 Predicted BBOX Zn-fing 45.2 8.7 0.00019 35.4 0.6 34 510-544 116-150 (156)
277 cd07642 BAR_ASAP2 The Bin/Amph 45.1 3.3E+02 0.0072 27.2 17.8 21 47-67 28-48 (215)
278 PF08580 KAR9: Yeast cortical 45.0 6E+02 0.013 30.2 26.4 53 9-61 24-76 (683)
279 KOG4424 Predicted Rho/Rac guan 43.6 30 0.00065 39.1 4.5 55 375-429 541-597 (623)
280 PF06034 DUF919: Nucleopolyhed 43.4 1.7E+02 0.0036 23.3 7.8 52 112-169 7-58 (62)
281 PF00320 GATA: GATA zinc finge 43.2 19 0.00042 25.0 2.0 32 515-546 1-34 (36)
282 PRK11019 hypothetical protein; 42.4 8 0.00017 32.9 -0.1 38 511-549 35-74 (88)
283 cd05134 RasGAP_RASA3 RASA3 (or 41.1 8.6 0.00019 40.7 -0.1 27 292-318 279-309 (310)
284 PF01258 zf-dskA_traR: Prokary 40.8 4 8.8E-05 28.4 -1.8 29 514-542 5-34 (36)
285 KOG1738 Membrane-associated gu 39.4 5.3 0.00012 45.3 -2.1 37 293-330 562-600 (638)
286 KOG4302 Microtubule-associated 39.3 7E+02 0.015 29.4 20.9 111 11-129 164-277 (660)
287 cd05128 RasGAP_GAP1_like The G 39.1 8.7 0.00019 40.8 -0.4 27 291-317 284-314 (315)
288 PF14523 Syntaxin_2: Syntaxin- 38.9 1E+02 0.0023 26.3 6.5 35 6-40 25-59 (102)
289 cd07630 BAR_SNX_like The Bin/A 38.8 3.9E+02 0.0085 26.3 16.2 38 13-50 10-47 (198)
290 smart00401 ZnF_GATA zinc finge 38.0 33 0.00072 26.0 2.7 37 511-547 2-40 (52)
291 KOG4236 Serine/threonine prote 37.8 29 0.00062 39.1 3.2 35 392-427 477-523 (888)
292 cd07588 BAR_Amphiphysin The Bi 37.4 4.3E+02 0.0093 26.3 19.9 47 155-209 138-184 (211)
293 PF09602 PhaP_Bmeg: Polyhydrox 36.4 3.9E+02 0.0085 25.5 12.6 139 12-180 17-156 (165)
294 PF10168 Nup88: Nuclear pore c 36.0 7.3E+02 0.016 29.6 14.7 26 158-183 584-609 (717)
295 KOG1924 RhoA GTPase effector D 36.0 8.4E+02 0.018 29.3 18.9 26 18-43 789-814 (1102)
296 cd07591 BAR_Rvs161p The Bin/Am 35.6 4.7E+02 0.01 26.3 22.0 43 21-63 11-53 (224)
297 COG1381 RecO Recombinational D 35.6 19 0.00041 36.9 1.4 31 509-539 151-182 (251)
298 PF11172 DUF2959: Protein of u 35.0 4.6E+02 0.0099 25.9 20.9 171 33-245 26-201 (201)
299 PF14803 Nudix_N_2: Nudix N-te 34.7 12 0.00026 25.8 -0.1 29 513-542 1-32 (34)
300 PHA00080 DksA-like zinc finger 34.4 16 0.00035 29.9 0.5 33 510-543 29-63 (72)
301 cd07618 BAR_Rich1 The Bin/Amph 33.3 5.5E+02 0.012 26.3 16.0 27 19-45 13-39 (246)
302 COG1283 NptA Na+/phosphate sym 33.2 7.9E+02 0.017 28.2 18.4 74 104-179 351-425 (533)
303 KOG0977 Nuclear envelope prote 32.8 8.1E+02 0.018 28.2 20.2 28 11-38 110-137 (546)
304 KOG0119 Splicing factor 1/bran 32.0 1.2E+02 0.0025 34.0 6.5 27 406-432 207-233 (554)
305 COG1997 RPL43A Ribosomal prote 31.8 46 0.001 28.1 2.8 32 507-540 30-61 (89)
306 KOG1920 IkappaB kinase complex 31.2 1.2E+03 0.025 29.5 16.6 56 171-228 1041-1096(1265)
307 KOG3973 Uncharacterized conser 30.7 7E+02 0.015 26.8 18.2 79 107-185 141-227 (465)
308 cd07612 BAR_Bin2 The Bin/Amphi 30.7 5.6E+02 0.012 25.6 19.9 34 15-48 20-53 (211)
309 KOG1264 Phospholipase C [Lipid 29.6 84 0.0018 37.2 5.2 55 376-430 855-913 (1267)
310 KOG2751 Beclin-like protein [S 28.4 8.5E+02 0.018 27.0 14.8 120 77-204 108-240 (447)
311 COG2174 RPL34A Ribosomal prote 27.6 34 0.00073 29.1 1.3 35 506-540 28-79 (93)
312 cd07686 F-BAR_Fer The F-BAR (F 27.3 6.7E+02 0.015 25.5 25.7 80 51-136 35-121 (234)
313 PRK13715 conjugal transfer pro 27.2 20 0.00044 29.4 -0.1 33 512-544 34-67 (73)
314 COG1734 DksA DnaK suppressor p 25.8 18 0.0004 32.7 -0.6 31 513-543 81-112 (120)
315 cd07171 NR_DBD_ER DNA-binding 25.8 42 0.00091 28.1 1.6 31 511-544 2-32 (82)
316 KOG0976 Rho/Rac1-interacting s 25.7 1.2E+03 0.027 28.0 25.9 31 10-40 88-118 (1265)
317 PF11365 DUF3166: Protein of u 25.6 1.6E+02 0.0035 25.5 5.1 41 7-47 1-41 (96)
318 smart00030 CLb CLUSTERIN Beta 25.1 5.5E+02 0.012 25.4 9.1 67 107-173 20-88 (206)
319 KOG4047 Docking protein 1 (p62 25.1 40 0.00087 37.1 1.7 29 292-320 7-36 (429)
320 PF13119 DUF3973: Domain of un 25.0 35 0.00076 24.2 0.8 14 533-546 2-15 (41)
321 PF07282 OrfB_Zn_ribbon: Putat 24.9 44 0.00095 26.6 1.5 25 512-538 28-52 (69)
322 PF13949 ALIX_LYPXL_bnd: ALIX 24.9 7.7E+02 0.017 25.3 22.7 18 121-138 191-208 (296)
323 PF15518 L_protein_N: L protei 24.7 2E+02 0.0044 27.5 6.0 60 130-195 4-63 (183)
324 cd07173 NR_DBD_AR DNA-binding 24.7 41 0.00088 28.2 1.3 31 511-544 2-32 (82)
325 PF07200 Mod_r: Modifier of ru 24.7 3.2E+02 0.007 25.3 7.6 50 77-131 97-146 (150)
326 PF08287 DASH_Spc19: Spc19; I 24.6 4.9E+02 0.011 24.6 8.7 81 154-242 12-92 (153)
327 TIGR01834 PHA_synth_III_E poly 24.3 8.9E+02 0.019 25.8 22.6 18 129-146 155-172 (320)
328 COG4477 EzrA Negative regulato 24.3 1.1E+03 0.024 26.9 21.2 30 115-144 124-153 (570)
329 KOG3507 DNA-directed RNA polym 23.7 41 0.0009 26.1 1.0 29 512-545 20-48 (62)
330 PF10764 Gin: Inhibitor of sig 23.5 43 0.00093 24.9 1.1 26 514-540 1-26 (46)
331 KOG0437 Leucyl-tRNA synthetase 23.4 1.3E+03 0.027 27.8 12.9 80 91-182 767-851 (1080)
332 cd07170 NR_DBD_ERR DNA-binding 23.3 47 0.001 28.8 1.5 29 513-544 5-33 (97)
333 smart00290 ZnF_UBP Ubiquitin C 23.3 49 0.0011 24.4 1.4 25 514-538 1-25 (50)
334 cd07160 NR_DBD_LXR DNA-binding 23.1 50 0.0011 28.9 1.6 31 511-544 17-47 (101)
335 PF10498 IFT57: Intra-flagella 23.0 9.9E+02 0.021 25.9 12.4 106 79-189 230-346 (359)
336 cd06968 NR_DBD_ROR DNA-binding 23.0 52 0.0011 28.4 1.7 31 511-544 4-34 (95)
337 KOG4305 RhoGEF GTPase [Signal 22.4 6.6E+02 0.014 31.1 11.1 39 396-434 655-693 (1029)
338 KOG3891 Secretory vesicle-asso 21.8 1E+03 0.022 25.6 14.5 58 120-184 21-81 (436)
339 PF06103 DUF948: Bacterial pro 21.6 3.4E+02 0.0073 22.7 6.5 29 13-41 25-53 (90)
340 cd05395 RasGAP_RASA4 Ras GTPas 21.5 70 0.0015 34.3 2.7 26 293-318 301-331 (337)
341 KOG2856 Adaptor protein PACSIN 21.2 9.8E+02 0.021 26.0 10.7 54 118-176 186-239 (472)
342 PF15272 BBP1_C: Spindle pole 21.0 8.1E+02 0.018 24.2 19.1 43 98-144 37-79 (196)
343 PF08397 IMD: IRSp53/MIM homol 20.9 8.3E+02 0.018 24.2 19.2 86 28-119 3-90 (219)
344 KOG1916 Nuclear protein, conta 20.7 1.6E+03 0.035 27.6 19.8 34 193-226 1059-1093(1283)
345 cd07625 BAR_Vps17p The Bin/Amp 20.7 8.9E+02 0.019 24.5 20.7 120 21-144 18-140 (230)
346 cd06966 NR_DBD_CAR DNA-binding 20.6 48 0.001 28.6 1.0 29 513-544 1-29 (94)
347 cd07664 BAR_SNX2 The Bin/Amphi 20.5 9E+02 0.019 24.5 20.8 118 24-145 25-145 (234)
348 KOG4217 Nuclear receptors of t 20.4 41 0.00089 37.0 0.6 30 510-542 267-296 (605)
349 KOG0774 Transcription factor P 20.2 9.6E+02 0.021 24.7 10.2 51 80-131 151-201 (334)
350 PF01763 Herpes_UL6: Herpesvir 20.2 9E+02 0.02 27.9 11.1 53 90-143 355-407 (557)
351 cd03031 GRX_GRX_like Glutaredo 20.0 59 0.0013 30.5 1.5 38 499-545 86-123 (147)
352 cd07683 F-BAR_srGAP1 The F-BAR 20.0 9.6E+02 0.021 24.6 22.3 42 13-61 4-45 (253)
No 1
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-74 Score=659.59 Aligned_cols=522 Identities=43% Similarity=0.634 Sum_probs=427.2
Q ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhh-CCCCCCCccccCchhHHH
Q 006276 2 HFNKLDDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFG-GGHNDPISVAFGGPVMTK 80 (652)
Q Consensus 2 ~~~~~~DSP~FRasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~-~~~~d~~~~~~~g~~L~~ 80 (652)
+++|+.|||+||+++..+|+++..+++.++++++.+....++-.++..+.+.|...+..+. -+ .|+... +++|.+
T Consensus 9 ~~e~lkdsp~fr~~~~~~ee~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~f~~~~~d~~~~~-~~~~~~---~~~l~~ 84 (785)
T KOG0521|consen 9 AEEFLKDSPQFRSTLDVFEEDAGTLEKYLNKLLKAMTRKYDAGKEFVQATEQFGKGLKDLFSLG-QDEEVI---SETLQK 84 (785)
T ss_pred hHHHhhcChhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc-cCchhh---hhHHHH
Confidence 4678999999999999999999999999999999999877765666666677777775553 23 332222 458999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHH
Q 006276 81 FTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHS 160 (652)
Q Consensus 81 f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~ 160 (652)
|+..+.|+..++..|..++++.+..||.+|++.||.++++.|++|++++++||.++.||.+++|++.+....|.+++|..
T Consensus 85 fs~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~dl~~v~~~kk~f~ka~~~~d~a~~k~~~l~k~~~~~~~~e~~~~l~~ 164 (785)
T KOG0521|consen 85 FSKVLRELGTYHTELRSQLAHTLSLPLSQFVKGDLHEVKELKKLFEKASEEYDLALVKYSRLPKKRRSKVKTEVEEELAA 164 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHhhHHHHHHHhhhhhhccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999876667788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006276 161 ARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNER 240 (652)
Q Consensus 161 ~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~el~~~lq~~r~~~~~~~~~l~~~ 240 (652)
+|++|++++|||+..|+.++.++++++|+.+++||+||..||++|++++.+++||++.+..++++++.+++.+++.++++
T Consensus 165 ~r~~f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g~~l~~~m~p~~~~i~~~v~ql~~~~~~e~~am~~~ 244 (785)
T KOG0521|consen 165 ARRKFQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINFFKQGEDLLSQMDPYIKKVATYVQQLREESDAEQRAMEQR 244 (785)
T ss_pred HHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchhcccHhHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhcCCCCCCCCCCCCcccccCCchhhHHHHHhhhccCCCceeeeEEEeccCCCCCCCceeEEEEEecC
Q 006276 241 MQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSR 320 (652)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~k~G~L~K~~~~~~~~WkrR~f~L~~~ 320 (652)
++.+..+.+.+.+.- .....|.++ .........|||+++.++..+.|+||||.++ +
T Consensus 245 ~q~l~~~~~~~~~~~--~~~~~~~~~---------------------~~~~~~~~~~~l~~k~~~~~~tw~r~~f~~q-~ 300 (785)
T KOG0521|consen 245 YQELRSASNLESRPK--SDSASPSGG---------------------NLKLGYRMEGYLRKKASNASKTWKRRWFSIQ-D 300 (785)
T ss_pred HHHHHHHhhhhhhcc--ccccccccc---------------------cccchhhhhhhhhhhcccchhhHHhhhhhhh-c
Confidence 988877665444431 111112211 1122345689999999888899999999998 5
Q ss_pred ceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccccccceeecccceeeeCCCCCCCcccEEEE
Q 006276 321 GMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRII 400 (652)
Q Consensus 321 g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~l~~~~vk~~~~~~~rrfcF~I~ 400 (652)
+.+.|....... + .....+|++|.|++.++..++||||+|+
T Consensus 301 ~~l~~~~r~~~~-------------------------------~--------~~~~~dL~~csvk~~~~~~drr~CF~ii 341 (785)
T KOG0521|consen 301 GQLGYQHRGADA-------------------------------E--------NVLIEDLRTCSVKPDAEQRDRRFCFEII 341 (785)
T ss_pred cccccccccccc-------------------------------c--------ccccccchhccccCCcccccceeeEEEe
Confidence 555544332210 0 0234678999999988777999999999
Q ss_pred eCCeeEEEEeCCHHHHHHHHHHHHHHHHHhhccCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCcccchhhccccccc
Q 006276 401 SPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPT-SPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLT 479 (652)
Q Consensus 401 t~~r~~~lqA~se~e~~~Wi~ai~~ai~~~l~~~~~~~~~~~-~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~ 479 (652)
+|+++|+|||+|+.|..+||.+|+++|..+++...++..... +..+.+...+++. .+.++. .....
T Consensus 342 S~tks~~lQAes~~d~~~Wi~~i~nsi~s~l~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~s~--------~~s~~---- 408 (785)
T KOG0521|consen 342 SPTKSYLLQAESEKDCQDWISALQNSILSALNSAFLGQDSTGGRNTQSGHSSSASY-STITSA--------NTSRE---- 408 (785)
T ss_pred cCCcceEEecCchhHHHHHHHHHHHHHHHHHhccCcccccccCCCccccccccccc-cccccc--------ccccc----
Confidence 999999999999999999999999999999998776543221 1111111111110 000000 00000
Q ss_pred cccccccccccchhccccCcccHHHHHHccCCCCccccCCCCCCCceeeccceeeeccchhhhcccCCCccceeEeecCC
Q 006276 480 SAYHERQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDV 559 (652)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~lg~~is~vks~~ld~ 559 (652)
...+..-++..++..|||..|+|||++.|+|+++|+||.+||+|+|+||+||+|+|||+||+||
T Consensus 409 ---------------~~~~~~~~~~~vq~~pgN~~c~Dcg~p~ptw~S~NLgv~~CIecSGvhRslGvh~SkvrsLtLD- 472 (785)
T KOG0521|consen 409 ---------------RLNKGISVIEEVQSVPGNAQCCDCGAPEPTWASINLGVLLCIECSGVHRSLGVHISKVRSLTLD- 472 (785)
T ss_pred ---------------ccccCcchhhhhhcCCchhhhhhcCCCCCchHhhhhchhhHhhccccccccCchhhhhhhhhhh-
Confidence 0011122577889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhchHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhccCCCCCCCCHHHHHHHHHHhhcCCCCcc
Q 006276 560 KVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKVQYPLWPL 639 (652)
Q Consensus 560 ~~w~~~~i~~~~~~GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~kY~~~~f~~ 639 (652)
.|+++.+.+++.+||..+|.|||+.+++-. ..+|.+..++..|+.||++||++++|..
T Consensus 473 -~~~~~l~~l~~~lgn~~~N~i~e~~l~~~~---------------------~~~~~~~~~~~~r~~~i~~kyve~~F~~ 530 (785)
T KOG0521|consen 473 -VWEPELLLLFKNLGNKYVNEIYEALLPSYD---------------------SSKPTASSSRQAREAWIKAKYVERRFSV 530 (785)
T ss_pred -ccCcHHHHHHHHhCcchhhhhhhccccccc---------------------ccCCCCccchhhhhHhhhcccceeeEee
Confidence 699999999999999999999999999721 3688888889999999999999999976
Q ss_pred CC
Q 006276 640 RF 641 (652)
Q Consensus 640 ~~ 641 (652)
.-
T Consensus 531 k~ 532 (785)
T KOG0521|consen 531 KE 532 (785)
T ss_pred cc
Confidence 53
No 2
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=6e-47 Score=398.27 Aligned_cols=347 Identities=24% Similarity=0.367 Sum_probs=292.6
Q ss_pred CccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhh-----C-CCCCCCccccCchh
Q 006276 4 NKLDDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFG-----G-GHNDPISVAFGGPV 77 (652)
Q Consensus 4 ~~~~DSP~FRasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~-----~-~~~d~~~~~~~g~~ 77 (652)
||++|||+||..+..+|.+++...+.++.++|.++.++.++.++..+++.|+..|+.|. + .++|+..++ .+
T Consensus 10 d~~ldsp~fre~l~~he~el~~tnkfik~~ikdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~~tdde~~ia---~s 86 (812)
T KOG1451|consen 10 DCYLDSPDFRERLKCHEVELDRTNKFIKELIKDGKELISALKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFIA---TS 86 (812)
T ss_pred ccccCChHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhheeeeccccccchHHHHH---HH
Confidence 89999999999999999999999999999999999999999999999999999999873 3 356677665 49
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHH
Q 006276 78 MTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEE 157 (652)
Q Consensus 78 L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~e 157 (652)
|..|+..+.++++-+..|+-+....+++||++|+++.|.-.||.||+|||..++|+..|+|++.++.+| .+.++|++.|
T Consensus 87 lkefa~ll~~ve~er~~~v~~Ase~li~PlekFRkEqIG~~KE~KkKydKe~ekfy~~LekHLhLSskk-esqlqeAD~Q 165 (812)
T KOG1451|consen 87 LKEFASLLNQVEDERMRMVGNASESLIEPLEKFRKEQIGTLKEEKKKYDKESEKFYQTLEKHLHLSSKK-ESQLQEADAQ 165 (812)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhhhhHHHHhhhhhhhHHHHHHHHHHhccccch-hhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999877 6779999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006276 158 LHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAAL 237 (652)
Q Consensus 158 L~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~el~~~lq~~r~~~~~~~~~l 237 (652)
+...|+.|.+++||||.+++++|.+++|+||++|+.|++++++|||-|+++.+++.||.+.++..+|++|+.++.++.+.
T Consensus 166 vd~~r~nFfe~SL~YV~~vQeVQErk~FefVEpllafl~slf~f~h~g~el~qDF~pfk~qlq~s~QnTrn~f~~Tr~E~ 245 (812)
T KOG1451|consen 166 VDTQRKNFFEASLQYVAEVQEVQERKRFEFVEPLLAFLYSLFSFFHVGSELHQDFKPFKDQLQTSVQNTRNNFNATRAEA 245 (812)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHhhhhhHHHHHHHHHHHhhhcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765544
Q ss_pred HHHHHHHHhhhhhhhhhcCCCCCCCCCCCCcccccCCchhhHHHHHhhhccCCCceeeeEEEeccCC-CCCCCceeEEEE
Q 006276 238 NERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSS-NLRGDWKRRFFV 316 (652)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~k~G~L~K~~~-~~~~~WkrR~f~ 316 (652)
.+.++..++ +|..+ ....+.+++|||+.+.+ .++++|.|+||+
T Consensus 246 EeLkKkmke---------------~p~e~---------------------k~p~p~t~eGYlY~QEK~~~g~sWvKyYC~ 289 (812)
T KOG1451|consen 246 EELKKKMKE---------------SPTED---------------------KRPTPSTKEGYLYMQEKSKIGKSWVKYYCV 289 (812)
T ss_pred HHHHHHHhh---------------Ccccc---------------------cCCCCcccceeeeehhhhhccchhhhheeE
Confidence 433332221 12111 01235689999998865 467899999998
Q ss_pred EecCc-eEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccccccceeecccceeeeCCCCCCCcc
Q 006276 317 LDSRG-MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRF 395 (652)
Q Consensus 317 L~~~g-~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~l~~~~vk~~~~~~~rrf 395 (652)
..... .+. |+|.+...|.- || ...++.+ ..|+++..+++|+||
T Consensus 290 Y~retk~~T-------------------Mvp~~qk~g~k---------~g-------~~~~~~l-KsC~RRktdSIdKRF 333 (812)
T KOG1451|consen 290 YSRETKIFT-------------------MVPANQKTGTK---------MG-------QTATFKL-KSCSRRKTDSIDKRF 333 (812)
T ss_pred eecccceEE-------------------EeecccCCCCc---------CC-------CcceEEe-hhhccCcccccccce
Confidence 65321 111 33443333321 11 1123344 455566789999999
Q ss_pred cEEEEeCCe--eEEEEeCCHHHHHHHHHHHHHH
Q 006276 396 CFRIISPTK--NYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 396 cF~I~t~~r--~~~lqA~se~e~~~Wi~ai~~a 426 (652)
||+|.+.+| ++++||.||+|+..||+||+++
T Consensus 334 CFDve~~erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 334 CFDVEVEERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred eeeeeecccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 999999875 6999999999999999999988
No 3
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-44 Score=375.08 Aligned_cols=289 Identities=34% Similarity=0.587 Sum_probs=203.6
Q ss_pred hhHHHHHhhhccCCCceeeeEEEeccCCCCC-CCceeEEEEEecCceEEEEecCC------------------CCCCCCC
Q 006276 277 KMIEAVMQSAAKGKVQTIRQGYLSKRSSNLR-GDWKRRFFVLDSRGMLYYYRKQC------------------SKSSGSG 337 (652)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~k~G~L~K~~~~~~-~~WkrR~f~L~~~g~l~y~~~~~------------------~~~~~~~ 337 (652)
+..+......+.|+..++|+|.|+||+++.. +.|||.|.+|.++|.|.||.+-. ++.-...
T Consensus 286 k~~e~~adtigsGRAIPIKQg~LlKrSgk~L~keWKKKYVtlcsnG~LtYh~sL~dYM~niHgKEiDL~~tTikvpGK~p 365 (749)
T KOG0705|consen 286 KALENHADTIGSGRAIPIKQGMLLKRSGKSLNKEWKKKYVTLCSNGVLTYHPSLGDYMKNIHGKEIDLLRTTIKVPGKRP 365 (749)
T ss_pred cchhhhhhhhcCCcccchhhhhHHHhcchHHHHHHhhhheeeccCcceeecccHHHHHHhcccceeeeeeeeeeccCccC
Confidence 3455566778888999999999999998754 99999999999999999996521 0100011
Q ss_pred CCcccccCc--cccccccccccc---c-c------ccC-CCCCC----------ccccc----cceeecccceeeeCCCC
Q 006276 338 SQLSSQRNS--SELGSGLLSRWL---S-S------HYH-GGVHD----------EKSAA----RHTVNLLTSTIKVDADQ 390 (652)
Q Consensus 338 ~~~~~~~~~--~~~~~~~~~~~~---~-~------~~~-g~~~~----------~~~~~----~~~i~l~~~~vk~~~~~ 390 (652)
+...+..+| ....-|++-..- + . -.. |++.+ +.++. ++.-...+...+ .|
T Consensus 366 platsa~ap~Ss~~~NGl~Kdm~~~rSd~Gl~ss~~~Spgsissaittspkl~pPpSp~~nkKkh~RKksTnskh--nd- 442 (749)
T KOG0705|consen 366 PLATSACAPSSSSKSNGLSKDMEPRRSDVGLGSSDCTSPGSISSAITTSPKLHPPPSPHANKKKHSRKKSTNSKH--ND- 442 (749)
T ss_pred ccccccccccccccccccccccccccCCCCCCcccCCCCCCcccccccCccCCCCCCccchhhhhhhhccCCCCC--Cc-
Confidence 111111000 000111110000 0 0 000 11111 00000 000000111111 11
Q ss_pred CCCcccEEEEeCC-eeEEEEeCCHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 006276 391 SDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMGSGHHRSASDSSSFESSDFDHAAV 469 (652)
Q Consensus 391 ~~rrfcF~I~t~~-r~~~lqA~se~e~~~Wi~ai~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~ 469 (652)
+-.|||+|++.. .+++|.|.+.+||++||+||+..|...|+.-.....
T Consensus 443 -EEde~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaSlq~cessk~------------------------------ 491 (749)
T KOG0705|consen 443 -EEDECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILASLQSCESSKS------------------------------ 491 (749)
T ss_pred -cccceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHHHhhhhhhcc------------------------------
Confidence 235899999875 789999999999999999999999877654221000
Q ss_pred hhhccccccccccccccccccchhccccCcccHHHHHHccCCCCccccCCCCCCCceeeccceeeeccchhhhcccCCCc
Q 006276 470 EEYTSERNLTSAYHERQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHI 549 (652)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~lg~~i 549 (652)
..+.++ ......++.|+..+||..|+||+.++|.|+|+|+|+.||++|+||||.||+|+
T Consensus 492 -----Ks~~~s----------------qsea~a~qairn~rgn~~c~dc~~~n~~wAslnlg~l~cieCsgihr~lgt~l 550 (749)
T KOG0705|consen 492 -----KSRLTS----------------QSEAMALQAIRNMRGNSHCVDCGTPNPKWASLNLGVLMCIECSGIHRNLGTHL 550 (749)
T ss_pred -----hhccch----------------hhhHHHHHHHhcCcCCceeeecCCCCcccccccCCeEEEEEchhhhhhhhhhh
Confidence 000000 01234678899999999999999999999999999999999999999999999
Q ss_pred cceeEeecCCCCCCHHHHHHHHHhchHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhccCCCCCCCCHHHHHHHHH
Q 006276 550 SKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIH 629 (652)
Q Consensus 550 s~vks~~ld~~~w~~~~i~~~~~~GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~ 629 (652)
|+||||.|| .|..|.+.+|.++||+.||.+||..... ..||.+++++++||+|||
T Consensus 551 Srvr~LeLD--dWPvEl~~Vm~aiGN~~AN~vWE~~~~G-----------------------~~KPs~~s~REEkErwIr 605 (749)
T KOG0705|consen 551 SRVRSLELD--DWPVELLKVMSAIGNDLANSVWEGSSQG-----------------------QTKPSPDSSREEKERWIR 605 (749)
T ss_pred hhhhccccc--cCcHHHHHHHHHhhhhHHHHHhhhhccC-----------------------CcCCCccccHHHHHHHHH
Confidence 999999999 8999999999999999999999996554 489999999999999999
Q ss_pred HhhcCCCCccCCCCCC
Q 006276 630 AKVQYPLWPLRFNCFM 645 (652)
Q Consensus 630 ~kY~~~~f~~~~~~~~ 645 (652)
+||++|.|..+++|..
T Consensus 606 ~KYeqklFLaPl~~te 621 (749)
T KOG0705|consen 606 AKYEQKLFLAPLPCTE 621 (749)
T ss_pred HHHHHHhhcCCCCCCC
Confidence 9999999999999953
No 4
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=3.2e-39 Score=314.65 Aligned_cols=201 Identities=69% Similarity=1.081 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHH
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~ 94 (652)
.|..+|++++.|+..++|++|.|++|++++++++.++.+|+.+|..|+.+.+|+..++.+|++|.+|+.+++|+.++++.
T Consensus 2 ~i~~~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~ 81 (202)
T cd07606 2 QLQELEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGSYKEV 81 (202)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999988889988887888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 006276 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVT 174 (652)
Q Consensus 95 l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~ 174 (652)
|++++++.++.||++|+++||++++|.||.|||++++||+++.||++++|+++++.++|++.+|..+|+.|++++||||.
T Consensus 82 L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~ea~~~l~~~R~~F~~~~ldyv~ 161 (202)
T cd07606 82 LRSQVEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKPEILAAAEEDLGTTRSAFETARFDLMN 161 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006276 175 ALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPY 215 (652)
Q Consensus 175 ~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~ 215 (652)
+|++++.+++++||++|++||+||++||++|++++.+++||
T Consensus 162 ~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~py 202 (202)
T cd07606 162 RLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLEPY 202 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999986
No 5
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=1.1e-38 Score=311.81 Aligned_cols=200 Identities=27% Similarity=0.424 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYK 92 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~ 92 (652)
|+.|..+|.+++.|+..|++++|.|+.|+++...++.++..|+++|+.|+.+..|+..+ +++|.+|+.+++|+++++
T Consensus 1 R~~l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~~i---~~~l~kF~~~l~el~~~~ 77 (200)
T cd07603 1 RASLEQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDSLV---QNCLNKFIQALQEMNNFH 77 (200)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHH---HHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999976666667999999999999877555443 469999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHH
Q 006276 93 EVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSL 172 (652)
Q Consensus 93 ~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDy 172 (652)
..|++++++.++.||++|+++||+.+||.||.||+++++||++++||++++|+| |..++|++.+|+++|+.|+++||||
T Consensus 78 ~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K~K-~~~~~Ea~~~L~~~Rk~f~~~sldy 156 (200)
T cd07603 78 TILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPRSK-PQEAEEATNILTATRSCFRHTALDY 156 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987 8889999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006276 173 VTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (652)
Q Consensus 173 v~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l 216 (652)
|.+|++++.+|+++||++|++||+||.+|||+|++++.+++||+
T Consensus 157 v~~in~iq~kKk~e~le~ll~~~~A~~tff~qG~el~~dl~py~ 200 (200)
T cd07603 157 VLQINVLQAKKRHEILSTLLSYMHAQFTFFHQGYDLLEDLEPYM 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCcC
Confidence 99999999999999999999999999999999999999999985
No 6
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=4.6e-38 Score=307.80 Aligned_cols=208 Identities=24% Similarity=0.346 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHh-----hCCCCCCCccccCchhHHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETF-----GGGHNDPISVAFGGPVMTKFTIALRE 87 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f-----~~~~~d~~~~~~~g~~L~~f~~~lke 87 (652)
|..|..+|+++..|++.+++|+|.|+.++++.++++.++..|+.+|..| ..+.+|+..+ ++|.+|+.+++|
T Consensus 1 ~~~l~~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~----~~l~kFs~~l~E 76 (215)
T cd07601 1 RSLLNVFEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILV----STLKQFSKVVDE 76 (215)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHH----HHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999887 3466777664 389999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhH-hHHHHHHHHHHHHHH
Q 006276 88 IGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVA-AILEEELHSARSAFE 166 (652)
Q Consensus 88 l~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~-~E~~~eL~~~Rk~f~ 166 (652)
|.+++..|++++++.++.||++|+++||+.+++.||.|||++++||+++.||++++|+++.+.. .|++.+|..+|+.|+
T Consensus 77 l~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~Ea~~~l~~~R~~F~ 156 (215)
T cd07601 77 LSTMHSTLSSQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSRLSKKRENTKVKIEVNDEVYACRKKQH 156 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998754444 699999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Q 006276 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLH-QMEPYINQVLTYAQ 224 (652)
Q Consensus 167 ~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~-~l~~~l~el~~~lq 224 (652)
+++||||.+|+.+|.||+++||++|++||+||.+||++||+++. +++||+++++..+|
T Consensus 157 ~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~pf~~~v~~~~q 215 (215)
T cd07601 157 QTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEEFLSDINTSVQ 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999997 99999999987653
No 7
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=100.00 E-value=3.3e-38 Score=306.20 Aligned_cols=201 Identities=23% Similarity=0.388 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhh-----CC-CCCCCccccCchhHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFG-----GG-HNDPISVAFGGPVMTKFTIALR 86 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~-----~~-~~d~~~~~~~g~~L~~f~~~lk 86 (652)
|+.|..+|.+++.+++.+++|+|.|+.|+++...++.++.+|+.+|..|+ ++ ++|+..++ ++|.+|+..+.
T Consensus 1 R~~l~~~E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~---~~L~kF~~~l~ 77 (207)
T cd07602 1 RENLHEHEAELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIA---ESLKEFGRLIE 77 (207)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHH---HHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999987 33 56666654 59999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHH
Q 006276 87 EIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFE 166 (652)
Q Consensus 87 el~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~ 166 (652)
++.++++.|+++++..++.||++|+++||+.+++.||+|||++++||+++.||++++|++++..++|++.+|..+|++|+
T Consensus 78 ei~~~r~~L~~q~~~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~~~~~ea~~~l~~~r~~f~ 157 (207)
T cd07602 78 TVEDERDRMLENAEEQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKENQLQEADAQLDMERRNFH 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006276 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (652)
Q Consensus 167 ~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l 216 (652)
+++||||.+|+.+|.+|+|+||++|++||+||.+|||+||+++.+++||+
T Consensus 158 ~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~py~ 207 (207)
T cd07602 158 QASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFKPYL 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999999984
No 8
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=100.00 E-value=3.9e-37 Score=297.83 Aligned_cols=200 Identities=21% Similarity=0.347 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhh-----CC-CCCCCccccCchhHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFG-----GG-HNDPISVAFGGPVMTKFTIALR 86 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~-----~~-~~d~~~~~~~g~~L~~f~~~lk 86 (652)
|..|+.+|.+++.+.+.+++++|.|+.|++++..++.++..|+.+|..|+ ++ ++|+..++ ++|.+|+.++.
T Consensus 1 r~~l~~~E~~le~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~---~~L~kF~~~L~ 77 (207)
T cd07636 1 RERLKSHEAELDKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIA---RSLQEFAAVLR 77 (207)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHH---HHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999987 44 56666664 59999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHH
Q 006276 87 EIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFE 166 (652)
Q Consensus 87 el~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~ 166 (652)
++.++++.|+++++..++.||++|+++||+.+||.||+|||.+++||+++.|++++++++++..++|++++|..+|++|.
T Consensus 78 ei~~~r~~L~~qa~~~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k~~~ls~k~K~~~~eEA~~~L~~~r~~F~ 157 (207)
T cd07636 78 NLEDERTRMIENASEVLITPLEKFRKEQIGAAKEAKKKYDKETEKYCAVLEKHLNLSSKKKESQLHEADSQVDLVRQHFY 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006276 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPY 215 (652)
Q Consensus 167 ~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~ 215 (652)
++|||||.+|+.+|.+++|+||+.|++||+||++|||+||+++.++.||
T Consensus 158 ~~sLdYV~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~~y 206 (207)
T cd07636 158 EVSLEYVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFSDF 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999987
No 9
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=8e-37 Score=297.79 Aligned_cols=199 Identities=26% Similarity=0.418 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc-hHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYD-GDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTY 91 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~-~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~ 91 (652)
|+.|...|.+|+.|+..|+|++|.|+.|+++ |+.|. +..+|+.+|..|.....++..+ ..+|.+|+.+++++|++
T Consensus 1 r~~~~~~E~~~~~le~~l~kl~K~~~~~~d~-g~~~~~a~~~F~~~l~d~~~~~~gd~~i---~~~L~kF~~~l~ei~~~ 76 (200)
T cd07637 1 RATIDEVETDVVEIEAKLDKLVKLCSGMIEA-GKAYATTNKLFVSGIRDLSQQCKKDEMI---SECLDKFGDSLQEMVNY 76 (200)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCchHH---HHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999998 66664 5799999999887643333223 34899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHH
Q 006276 92 KEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFS 171 (652)
Q Consensus 92 ~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslD 171 (652)
+..|+++++..+++||++|+++||+.+||.||.||+++++||++++|+++++ +++|..++|++.+|+++|+.|+++|||
T Consensus 77 ~~~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k-~kk~~~l~Ea~~~L~~~Rk~f~~asLd 155 (200)
T cd07637 77 HMILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAP-RHKPHEVEEATSTLTITRKCFRHLALD 155 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988877 557788899999999999999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006276 172 LVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (652)
Q Consensus 172 yv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l 216 (652)
||.+|+.+|.+|+|+||++|++||+||.+||++||+++.+++||+
T Consensus 156 yv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~py~ 200 (200)
T cd07637 156 YVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDPYM 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccC
Confidence 999999999999999999999999999999999999999999985
No 10
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=9.3e-37 Score=295.40 Aligned_cols=199 Identities=24% Similarity=0.388 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhC-CCCCCCccccCchhHHHHHHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG-GHNDPISVAFGGPVMTKFTIALREIGTY 91 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~-~~~d~~~~~~~g~~L~~f~~~lkel~~~ 91 (652)
|+.|..+|++++.|+..+++++|.|+.|+++..+++.++..|+.+|..|+. +.+|+. ++++|.+|+.++.||.++
T Consensus 1 r~~i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~~~~~De~----i~~~l~kF~~~l~ei~~~ 76 (200)
T cd07638 1 RAALEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQYSSKDAV----IETSLTKFSDTLQEMINY 76 (200)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCcchh----hHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999988888899999999999974 344442 357999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHH
Q 006276 92 KEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFS 171 (652)
Q Consensus 92 ~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslD 171 (652)
++.|+++++..++.||++|+++||+.++|.||+||+++++||.++.||++++|+| +..++|++.+|..+|++|++++||
T Consensus 77 ~~~L~~q~~~~l~~~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~~~~k~k-~~e~eEa~~~l~~~r~~F~~~~ld 155 (200)
T cd07638 77 HTILFDQAQRSIKAQLQTFVKEDLRKFKDAKKQFDKVSEEKENALVKNAQVQRNK-QHEVEEATNILTATRKCFRHIALD 155 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhccCCcCc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999776 666799999999999999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006276 172 LVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (652)
Q Consensus 172 yv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l 216 (652)
||.+|+.+|.+|+|+||++|++||+||.+||++||+++.+++||+
T Consensus 156 Yv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~py~ 200 (200)
T cd07638 156 YVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELGPYM 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999985
No 11
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=9.3e-37 Score=290.60 Aligned_cols=201 Identities=18% Similarity=0.255 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhC-----C-CCCCCccccCchhHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG-----G-HNDPISVAFGGPVMTKFTIALR 86 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~-----~-~~d~~~~~~~g~~L~~f~~~lk 86 (652)
|..|+.+|.+|+.+++.|++|+|.|+.++++...+..++++|+.+|..|.- . ++|+..++ .+|.+|+..+.
T Consensus 1 r~~l~~hE~ele~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~---~sL~~F~~~L~ 77 (207)
T cd07633 1 RERLKCYEQELERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIA---ESFKEFAELLQ 77 (207)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHH---HHHHHHHHHHH
Confidence 678999999999999999999999999999988888899999999998752 2 45666664 49999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHH
Q 006276 87 EIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFE 166 (652)
Q Consensus 87 el~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~ 166 (652)
++++++..|+++.+..++.||++|++++|+.+||.||.|||.+++||+++.|+++++.++++..++|++.+|...|++|.
T Consensus 78 ~ie~~r~~l~d~aq~s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~~~~aL~k~a~~s~k~K~~e~eEA~~~L~~~r~~F~ 157 (207)
T cd07633 78 EVEEERMMMVQNASDLLIKPLENFRKEQIGFTKERKKKFEKDSEKFYSLLDRHVNLSSKKKESQLQEADLQVDKERQNFY 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999777788889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006276 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (652)
Q Consensus 167 ~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l 216 (652)
+.|||||.+|+++|.+++|+||++|++||++|++|||+||+++.+++||.
T Consensus 158 ~~aLdYV~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~~y~ 207 (207)
T cd07633 158 ESSLEYVYQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFLPYK 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999999999973
No 12
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=100.00 E-value=1e-36 Score=294.42 Aligned_cols=201 Identities=23% Similarity=0.336 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhh------CCCCCCCccccCchhHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFG------GGHNDPISVAFGGPVMTKFTIALR 86 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~------~~~~d~~~~~~~g~~L~~f~~~lk 86 (652)
|..|+.+|.+++...+.|++++|.|+.|++++..++.++..|+.+|..|+ .+++|+..++ .+|..|+..++
T Consensus 1 r~~l~~~e~~l~~t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~---~~l~~Fs~~l~ 77 (207)
T cd07634 1 RERLQCHEIELERTNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIA---QSLKEFARLLI 77 (207)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHH---HHHHHHHHHHH
Confidence 66899999999999999999999999999999999999999999999997 3566666664 48999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHH
Q 006276 87 EIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFE 166 (652)
Q Consensus 87 el~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~ 166 (652)
++.+++..|++++++.++.||++|+++||+.+||.||+|||++++||++++|++++++++++..+.|++++|..+|++|.
T Consensus 78 el~~~~~~L~~~~~~~l~~pL~~f~k~dl~~vKe~kK~FDK~se~y~~aleK~l~l~~~kk~~~~~ea~~~l~~~R~~F~ 157 (207)
T cd07634 78 AVEEERRRLIQNANDVLIAPLEKFRKEQIGAAKDGKKKFDKESEKYYSILEKHLNLSAKKKESHLQRADTQIDREHQNFY 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHhHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006276 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (652)
Q Consensus 167 ~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l 216 (652)
+++||||.+|+++|.+++|+||+.|++||+||++|||+||+++.+++||.
T Consensus 158 ~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~py~ 207 (207)
T cd07634 158 EASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFAPYK 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999973
No 13
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=1.3e-36 Score=293.93 Aligned_cols=199 Identities=24% Similarity=0.320 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhC-CCCCCCccccCchhHHHHHHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG-GHNDPISVAFGGPVMTKFTIALREIGTY 91 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~-~~~d~~~~~~~g~~L~~f~~~lkel~~~ 91 (652)
|+.|...|.+|+.|++.|++++|.|+.|+++...++.++.+|+++|..|+. +..|+. ++++|.+|+.+++||.++
T Consensus 1 r~~i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~~D~~----i~~~l~kFs~~l~ei~~~ 76 (200)
T cd07639 1 RAAIEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGPKDPM----MAECLEKFSDGLNHILDS 76 (200)
T ss_pred CchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch----hHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999989988999999999999987 444543 357999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHH
Q 006276 92 KEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFS 171 (652)
Q Consensus 92 ~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslD 171 (652)
+..|+++++.+++.||++|+++||+.+||.||+|||++++||+++.|+++++|+ ++..++|++++|..+|++|.+++||
T Consensus 77 ~~~Ll~~~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~~~~~k~-k~~e~~Ea~~~l~~~R~~F~~~~ld 155 (200)
T cd07639 77 HAELLEATQFSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQHNAETPRR-KAQEVEEAAAALLGARATFRDRALD 155 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHHHHhhcccc-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999866 5566799999999999999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006276 172 LVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (652)
Q Consensus 172 yv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l 216 (652)
||.+|+.++.+|+|+||+.|++||+||++||++||+++.+++||+
T Consensus 156 YV~~in~iq~kKkfefle~ll~~m~a~~tfF~qG~ell~~l~~y~ 200 (200)
T cd07639 156 YALQINVIEDKKKFDILEFMLQLMEAQASFFQQGHEALSALHQYR 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999999999999999999999984
No 14
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.8e-39 Score=319.18 Aligned_cols=118 Identities=42% Similarity=0.746 Sum_probs=110.7
Q ss_pred cCcccHHHHHHccCCCCccccCCCCCCCceeeccceeeeccchhhhcccCCCccceeEeecCCCCCCHHHHHHHHHhchH
Q 006276 497 VKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNA 576 (652)
Q Consensus 497 ~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~lg~~is~vks~~ld~~~w~~~~i~~~~~~GN~ 576 (652)
.++++.|+.|++.|+|++|||||++.|+|||+|+|||||+.|+||||+||+||||||||+|| .|++|+|+.|+.+||.
T Consensus 10 ~~~~~~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD--~W~~eqv~~m~~~GN~ 87 (287)
T KOG0703|consen 10 ERNKRRLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLD--EWTDEQVDFMISMGNA 87 (287)
T ss_pred chHHHHHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeecc--ccCHHHHHHHHHHcch
Confidence 34677899999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhcccccccccCCCCCCCCCCCcchhhccCCCCCCCCHHHHHHHHHHhhcCCCCccCC
Q 006276 577 FANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKVQYPLWPLRF 641 (652)
Q Consensus 577 ~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~kY~~~~f~~~~ 641 (652)
+||++||+.+|+. +.+|.+++ .+|+|||+|||.|+|+.+-
T Consensus 88 ~an~~~ea~~p~~----------------------~~~p~~d~---~~e~FIR~KYE~kkf~~~~ 127 (287)
T KOG0703|consen 88 KANSYYEAKLPDP----------------------FRRPGPDD---LVEQFIRDKYERKKFLDPE 127 (287)
T ss_pred hhhhhccccCCcc----------------------ccCCChHH---HHHHHHHHHHhhhhhccch
Confidence 9999999999984 67888764 8999999999999999864
No 15
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=100.00 E-value=7.9e-36 Score=288.72 Aligned_cols=201 Identities=21% Similarity=0.308 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhh-----CCCCCCCccccCchhHHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFG-----GGHNDPISVAFGGPVMTKFTIALRE 87 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~-----~~~~d~~~~~~~g~~L~~f~~~lke 87 (652)
|..|+.+|.+++.+.+.|++|+|.|+.|++++..++.++.+|+.+|..|+ ++.+|+... .+++|..|++.+.+
T Consensus 1 r~~~~~~e~~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~--i~~sl~ef~~~~~e 78 (207)
T cd07635 1 RERIRAHEAELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERC--IDASLQEFSNFLKN 78 (207)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHH--HHHHHHHHHHHHHH
Confidence 66899999999999999999999999999999999999999999999987 555554322 25799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHH
Q 006276 88 IGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQ 167 (652)
Q Consensus 88 l~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~ 167 (652)
|.+.+..|+.+++..++.||++|+++||+.++|.||+||+.+++||+++.||+++++++++..++|++.+|..+|++|++
T Consensus 79 l~d~r~~L~~~~~~~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~e~~EA~~~l~~~r~~F~~ 158 (207)
T cd07635 79 LEEQREIMALNVTETLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEPQLQEADVQVEQNRQHFYE 158 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998666555889999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006276 168 ARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPY 215 (652)
Q Consensus 168 aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~ 215 (652)
+|||||.+|+.+|.+|+|+||++|++||+||.+|||+||+++.+++||
T Consensus 159 ~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~~y 206 (207)
T cd07635 159 LSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFNHY 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999997
No 16
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=100.00 E-value=2.3e-36 Score=271.56 Aligned_cols=115 Identities=44% Similarity=0.817 Sum_probs=96.5
Q ss_pred cHHHHHHccCCCCccccCCCCCCCceeeccceeeeccchhhhcccCCCccceeEeecCCCCCCHHHHHHHHHhchHHHHH
Q 006276 501 KPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANS 580 (652)
Q Consensus 501 ~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~lg~~is~vks~~ld~~~w~~~~i~~~~~~GN~~~n~ 580 (652)
+.|+.|++.|+|+.|||||+++|+|||+|||||||+.|+|+||.||+|||+||||+|| .|++++|+.|+.+||.++|+
T Consensus 2 ~~l~~l~~~~~N~~CaDCg~~~p~w~s~~~GiflC~~Cag~HR~lg~~is~VkSi~~d--~w~~~ev~~~~~~GN~~~n~ 79 (116)
T PF01412_consen 2 KILRELLKKPGNKVCADCGAPNPTWASLNYGIFLCLECAGIHRSLGVHISRVKSITMD--NWSPEEVQRMREGGNKRANS 79 (116)
T ss_dssp HHHHHHHCSTTCTB-TTT-SBS--EEETTTTEEE-HHHHHHHHHHTTTT--EEETTTS-----HHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHcCcCcCcCCCCCCCCCCEEEeecChhhhHHHHHHHHHhcccchhccccccC--CCCHHHHHHHHHHChHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred HHHhhcccccccccCCCCCCCCCCCcchhhccCCCCCCCCHHHHHHHHHHhhcCCCCccC
Q 006276 581 VWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKVQYPLWPLR 640 (652)
Q Consensus 581 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~kY~~~~f~~~ 640 (652)
+||++.++ ..+|.+.++.+.+++||++||++++|+.+
T Consensus 80 ~~e~~~~~-----------------------~~~~~~~~~~~~~~~fI~~KY~~k~f~~~ 116 (116)
T PF01412_consen 80 IWEANSPP-----------------------PKKPPPSSDQEKREQFIRAKYVEKAFISK 116 (116)
T ss_dssp HHTTTSTT-----------------------TTTHCTTSHHHHHHHHHHHHHTTHTTS-C
T ss_pred HHHcCCCC-----------------------CCCCCCCCcHHHHHHHHHHHHHhhhhccC
Confidence 99999433 35777778889999999999999999863
No 17
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=100.00 E-value=9.4e-34 Score=272.07 Aligned_cols=208 Identities=22% Similarity=0.335 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhh-----CCCCCCCccccCchhHHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFG-----GGHNDPISVAFGGPVMTKFTIALRE 87 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~-----~~~~d~~~~~~~g~~L~~f~~~lke 87 (652)
|..+..||++...+.++.+.|.+++..+..++.++..|+..|+..|.+|- -+-+|+. + ..+|.+|+..+.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ls~a~~~~~~~l~~~~~~~f~~~~dDe~-i---~~~L~kFs~~L~E 76 (215)
T cd07631 1 RSLLGVFEEDAAAISNYFNQLFQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEV-M---SSTLQQFSKVIDE 76 (215)
T ss_pred CcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHH-H---HHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999997765 2335555 3 3599999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhH-hHHHHHHHHHHHHHH
Q 006276 88 IGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVA-AILEEELHSARSAFE 166 (652)
Q Consensus 88 l~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~-~E~~~eL~~~Rk~f~ 166 (652)
+.+++..|+++++..++.||.+|+++||+++||.||.||+.+++||.++.||++++|+|+.+.+ .|++.++..+|++|+
T Consensus 77 l~~~~~~L~~q~~~sl~~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al~K~a~lsk~K~~E~~~eea~~~v~~tR~~F~ 156 (215)
T cd07631 77 LSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKRRENEKVKYEVTEDVYTSRKKQH 156 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988865 568889999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Q 006276 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYE-LLHQMEPYINQVLTYAQ 224 (652)
Q Consensus 167 ~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e-~~~~l~~~l~el~~~lq 224 (652)
+++||||.+|+.+|.||+++||++|++||+||.+|||+||+ +..+++||++++...+|
T Consensus 157 ~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~f~~~l~~~~q 215 (215)
T cd07631 157 QTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLTNIGTSVQ 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999 66799999999987653
No 18
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=100.00 E-value=2.1e-35 Score=263.51 Aligned_cols=111 Identities=53% Similarity=0.864 Sum_probs=102.1
Q ss_pred CCCCccccCCCCCCCceeeccceeeeccchhhhcccCCCccceeEeecCCCCCCHHHHHHHHHhchHHHHHHHHhhcccc
Q 006276 510 CGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSR 589 (652)
Q Consensus 510 ~~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~lg~~is~vks~~ld~~~w~~~~i~~~~~~GN~~~n~~~e~~~~~~ 589 (652)
|+|+.|||||+++|+|||+|+|||||+.|+|+||.||+|||+||||+|| .|++++|++|+.+||.++|++||+++++.
T Consensus 1 ~~N~~CaDC~~~~p~w~s~~~GifvC~~CsgiHR~lg~his~VkSl~md--~w~~~~i~~~~~~GN~~~n~~~e~~~~~~ 78 (112)
T smart00105 1 PGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLD--TWTEEELRLLQKGGNENANSIWESNLDDF 78 (112)
T ss_pred CCCCcccCCCCCCCCcEEeccceeEhHHhHHHHHhcCCCcCeeeecccC--CCCHHHHHHHHHhhhHHHHHHHHhhCCcc
Confidence 5899999999999999999999999999999999999999999999999 79999999999999999999999999873
Q ss_pred cccccCCCCCCCCCCCcchhhccCCCCCCCCHHHHHHHHHHhhcCCCCccCCCCC
Q 006276 590 SAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKVQYPLWPLRFNCF 644 (652)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~kY~~~~f~~~~~~~ 644 (652)
..+|.+.+....+++||++||++|+|+.+.++-
T Consensus 79 ----------------------~~~~~~~~~~~~~~~fI~~KY~~k~f~~~~~~~ 111 (112)
T smart00105 79 ----------------------SLKPPDSDDQQKYESFIAAKYEEKLFVPPESAE 111 (112)
T ss_pred ----------------------ccCCCCCchHHHHHHHHHHHHHhhhccccccCC
Confidence 234444556789999999999999999988764
No 19
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=100.00 E-value=8.9e-33 Score=262.70 Aligned_cols=206 Identities=19% Similarity=0.289 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHh-----hCCCCCCCccccCchhHHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETF-----GGGHNDPISVAFGGPVMTKFTIALRE 87 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f-----~~~~~d~~~~~~~g~~L~~f~~~lke 87 (652)
|..+..||++...+.++.+.|.+.+..+..+.+++..++..++..|..+ .-+..|+.. ..+|.+|+..+.|
T Consensus 1 ~~l~~v~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~s~~l~~~~~~~~~~~~~D~~v----~~sL~kFs~~L~e 76 (215)
T cd07632 1 RSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEV----ISTLQYFAKVVDE 76 (215)
T ss_pred CcHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHH----HHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999998888888888544 345556554 3499999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHh-HHHHHHHHHHHHHH
Q 006276 88 IGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAA-ILEEELHSARSAFE 166 (652)
Q Consensus 88 l~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~-E~~~eL~~~Rk~f~ 166 (652)
|.+++..|.++++..++.||++|+++||+++||.||.|||.+++||+|+.||++++|+|+.+..+ |...+|..+|++|+
T Consensus 77 l~~~h~~L~dqaq~sl~~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~KnaqlskkK~~E~~eae~~~~l~~sRr~F~ 156 (215)
T cd07632 77 LNVLHSELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYSRLPKKRENEKVKAEVAKEVAYSRRKQH 156 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998665543 34457999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHH
Q 006276 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLH-QMEPYINQVLTY 222 (652)
Q Consensus 167 ~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~-~l~~~l~el~~~ 222 (652)
++|||||.+||.+|.||+|+||++|++||+||.+|||+|++++. .++.|+..+.+.
T Consensus 157 ~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL~~~~~~~~~~~~~~~ 213 (215)
T cd07632 157 LSSLQYYCALNALQYRKRVAMLEPMLGYTHGQINFFKKGAELFSKKLDSFLSSVSDM 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999996 689999887654
No 20
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=100.00 E-value=9.8e-33 Score=263.52 Aligned_cols=204 Identities=22% Similarity=0.330 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCC--CCCCccccCchhHHHHHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGH--NDPISVAFGGPVMTKFTIALREIGT 90 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~--~d~~~~~~~g~~L~~f~~~lkel~~ 90 (652)
|.+|..+|+.++.++..|+|++|.|+.++++-..+..++..|+++|+.++... .|+..+ +.+|.+|+..++|+.+
T Consensus 1 r~tv~~~ee~l~~~e~~L~Kl~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~~~dd~~i---~~a~~kfs~~~~El~~ 77 (215)
T cd07641 1 RNTVNVLEEALDQDRTALQKVKKSVKAIYNSGQDHVQNEENYAQALDKFGSNFLSRDNPDL---GTAFVKFSTLTKELST 77 (215)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhH---HHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999984444456799999999999865 443333 4699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHhcccc--CCChhhHh------HHHHHHHHH
Q 006276 91 YKEVLRSQVEHMLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKFLSLRK--GTKTDVAA------ILEEELHSA 161 (652)
Q Consensus 91 ~~~~l~~~~~~~i~~pL~~f~~~di~~~k-e~Rk~Fek~~~~YD~al~ky~s~~K--~k~~~~~~------E~~~eL~~~ 161 (652)
++..|++++++.+..||++|+++||+.+| |.||.|||++++||+++.|..+.+| .|..+..+ |++++|...
T Consensus 78 ~~k~L~~~~~~~v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~ek~~r~~~K~~e~~r~e~~~~Eaa~~l~~~ 157 (215)
T cd07641 78 LLKNLLQGLSHNVIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIEKEKREHAKQHGMIRTEITGAEIAEEMEKE 157 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCcccchhccccchhHHHHHHHH
Confidence 99999999999999999999999999999 9999999999999999999999988 55555443 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006276 162 RSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQV 219 (652)
Q Consensus 162 Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~el 219 (652)
|++|++.+|||+.+|++++.|+++++|+.|++||+||.+||++|+++++++.||++++
T Consensus 158 Rr~Fq~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~k~l 215 (215)
T cd07641 158 RRLFQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999864
No 21
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=100.00 E-value=6.5e-32 Score=266.24 Aligned_cols=206 Identities=23% Similarity=0.337 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYK 92 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~ 92 (652)
|.+|..+|+.++.++..|+|+.|.|+.++++...++.++.+|+++|+.|+.+..+..... .+.+|.+|+..++|+.+++
T Consensus 1 r~~v~~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~-i~~~l~kF~~~l~El~~~~ 79 (215)
T cd07604 1 RNTVGALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEED-LGAAFLKFSVFTKELAALF 79 (215)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHH-HHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999877778889999999999998764432211 2458999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHhccccCCC-------hhh-HhHHHHHHHHHHH
Q 006276 93 EVLRSQVEHMLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKFLSLRKGTK-------TDV-AAILEEELHSARS 163 (652)
Q Consensus 93 ~~l~~~~~~~i~~pL~~f~~~di~~~k-e~Rk~Fek~~~~YD~al~ky~s~~K~k~-------~~~-~~E~~~eL~~~Rk 163 (652)
..|+++++++++.||++|+++||+.++ |.||.||+++++||.+..+..+.++..- ++. ..|++++|..+|+
T Consensus 80 ~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e~~~~e~~~~l~~~R~ 159 (215)
T cd07604 80 KNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTEITGAEIAEEMEKERR 159 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999997 9999999999999999877655443311 111 2577899999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006276 164 AFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQV 219 (652)
Q Consensus 164 ~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~el 219 (652)
.|++++||||.+|++++.+++++||+++++||+||.+||++|++++++++||++++
T Consensus 160 ~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~~~L 215 (215)
T cd07604 160 MFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999864
No 22
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=99.97 E-value=2.2e-30 Score=249.38 Aligned_cols=203 Identities=22% Similarity=0.361 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-chHHHHHHHHHHhhCC--CCCCCccccCchhHHHHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGY-DGDIAFASALETFGGG--HNDPISVAFGGPVMTKFTIALREIG 89 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~-~~~~~f~~~L~~f~~~--~~d~~~~~~~g~~L~~f~~~lkel~ 89 (652)
|.+|..+|+.++..+..|.++.|.++.+.++ |..| .++..|+++|+.+|.. ..|+..+ |.+|.+|+..++|+.
T Consensus 1 ~~~~~~~ee~l~~d~~~l~~~kk~~k~~~~s-G~~yv~~~~~f~~~L~~LG~~~l~~dd~~~---~~~l~kf~~~~~El~ 76 (215)
T cd07642 1 RNTVVAIEEALDVDRTVLYKMKKSVKAIHTS-GLAHVENEEQYTQALEKFGSNCVCRDDPDL---GSAFLKFSVFTKELT 76 (215)
T ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccCCCcHHH---HHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999987 5555 4579999999999985 3333322 569999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHhcccc--CCChhhH------hHHHHHHHH
Q 006276 90 TYKEVLRSQVEHMLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKFLSLRK--GTKTDVA------AILEEELHS 160 (652)
Q Consensus 90 ~~~~~l~~~~~~~i~~pL~~f~~~di~~~k-e~Rk~Fek~~~~YD~al~ky~s~~K--~k~~~~~------~E~~~eL~~ 160 (652)
+++..|++++++++..||++|+++||+.+| |.||.||+.+++||+++.|..+.++ .|..+.. .|++++|..
T Consensus 77 ~l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~ 156 (215)
T cd07642 77 ALFKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVTKIEKEKKEHAKMHGMIRTEISGAEIAEEMEK 156 (215)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccchhccchhhHHHHHHH
Confidence 999999999999999999999999999998 9999999999999999999888776 4444332 678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006276 161 ARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQV 219 (652)
Q Consensus 161 ~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~el 219 (652)
+|++|++.++||+.+|++++.++++++|..+++|++||.+||++|++++++++||++++
T Consensus 157 ~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~~~l 215 (215)
T cd07642 157 ERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999864
No 23
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=99.97 E-value=7e-30 Score=240.04 Aligned_cols=206 Identities=17% Similarity=0.238 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYK 92 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~ 92 (652)
|.+|..+|+.++..+..|.++.|.++.+..+-..+...+..++++|+.||++........ .|..+-+|+...+|+....
T Consensus 1 r~tv~~lee~le~d~~~L~k~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~l~~~~~~-~~t~fl~~av~tkel~al~ 79 (213)
T cd07640 1 RSTAAALEESLEGDQASLQRIKKIVKAIHNSGLNHVENEEQYTEALENLGNSHLSQNNHE-LSTGFLNLAVFTREVTALF 79 (213)
T ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhhhcCCCcH-HHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999997777655555667999999999998654322222 2568999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHhccccCCCh-h-----hHhHHHHHHHHHHHHH
Q 006276 93 EVLRSQVEHMLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKFLSLRKGTKT-D-----VAAILEEELHSARSAF 165 (652)
Q Consensus 93 ~~l~~~~~~~i~~pL~~f~~~di~~~k-e~Rk~Fek~~~~YD~al~ky~s~~K~k~~-~-----~~~E~~~eL~~~Rk~f 165 (652)
..|++++++.+..||++|+++||+.+| |.||.|||++++||+++.|..+.+|.+.- . ...|+++.|...|++|
T Consensus 80 k~L~qn~nniv~fpldsflK~dlr~~K~D~KK~FeK~skDyE~kl~K~ak~~r~k~~~~g~~~~e~eEaae~l~~eRr~F 159 (213)
T cd07640 80 KNLVQNLNNIVSFPLDSLLKGQLRDGRLESKKQMEKAWKDYEAKIGKLEKERREKQKQHGLIRLDMTDTAEDMQRERRNF 159 (213)
T ss_pred HHHHHhhhhhhccchHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHhccccccchhcccccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999887651 2 3478899999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006276 166 EQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQV 219 (652)
Q Consensus 166 ~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~el 219 (652)
++.+|||+.++++++.++++++|+.|++|+|||.+||++|+++++++.||++++
T Consensus 160 ql~acdYllkin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~pyik~l 213 (213)
T cd07640 160 QLHMCEYLLKAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGPFIEKL 213 (213)
T ss_pred HHHHHHHHHHHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Confidence 999999999999999999999999999999999999999999999999999864
No 24
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=99.97 E-value=2.4e-31 Score=282.27 Aligned_cols=123 Identities=20% Similarity=0.398 Sum_probs=108.9
Q ss_pred hccccCcccHHHHHHccCCCCccccCCCCCCCceeeccceeeeccchhhhcccCCCccceeEeecCCCCCCHHHHHHHHH
Q 006276 493 QRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQS 572 (652)
Q Consensus 493 ~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~lg~~is~vks~~ld~~~w~~~~i~~~~~ 572 (652)
++..++++++|+.|++.|+|+.|+|||+.+|.|||+|+|||||+.|+||||.|| +|||||+|| .|++++|++|+.
T Consensus 4 KR~qERnekILreLlklPgNk~CADCgs~~P~WASiNlGIFICi~CSGIHRsLG---hRVKSLSLD--kWT~EEVe~Mk~ 78 (648)
T PLN03119 4 KREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFT---HRVKSVSMS--KFTSKEVEVLQN 78 (648)
T ss_pred hHHHHHHHHHHHHHhhCcCCCccccCCCCCCCceeeccceEEeccchhhhccCC---ceeeccccC--CCCHHHHHHHHH
Confidence 345667899999999999999999999999999999999999999999999998 599999999 899999999999
Q ss_pred hchHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhccCCCCCCCCHHHHHHHHHHhhcCCCCccCCC
Q 006276 573 LGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKVQYPLWPLRFN 642 (652)
Q Consensus 573 ~GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~kY~~~~f~~~~~ 642 (652)
+||.++|++||++|++.. .++...+..+.+++|||.||++|+|+.+..
T Consensus 79 gGN~~AN~iyeanw~~~~----------------------~~~P~~sD~e~lr~FIR~KYVeKRF~~~~~ 126 (648)
T PLN03119 79 GGNQRAREIYLKNWDHQR----------------------QRLPENSNAERVREFIKNVYVQKKYAGAND 126 (648)
T ss_pred hchHHHHHHHHhhccccc----------------------CCCCCCccHHHHHHHHHHHHhhhhccCcCC
Confidence 999999999999998732 233333445667899999999999998753
No 25
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=99.97 E-value=2.2e-31 Score=274.66 Aligned_cols=119 Identities=42% Similarity=0.724 Sum_probs=106.4
Q ss_pred cccHHHHHHccCCCCccccCCCCCCCceeeccceeeeccchhhhcccCCCccceeEeecCCCCCCHHHHHHHHHhchHHH
Q 006276 499 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA 578 (652)
Q Consensus 499 ~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~lg~~is~vks~~ld~~~w~~~~i~~~~~~GN~~~ 578 (652)
..+.+..|+..++|+.|||||+++|+|||+|||||||++||||||+||+|||+||||+|| .|++++|..|..+||.+|
T Consensus 7 ~~~~l~~l~~~~~Nk~CaDCga~~P~W~S~nlGvfiCi~CagvHRsLGvhiS~VKSitLD--~wt~~~l~~m~~gGN~~a 84 (319)
T COG5347 7 DRKLLKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLD--NWTEEELRRMEVGGNSNA 84 (319)
T ss_pred HHHHHHHHhhccccCccccCCCCCCceEecccCeEEEeecchhhhccccceeeeeeeecc--cCCHHHHHHHHHhcchhh
Confidence 356778889999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCcchhhccCCCCCCCCHHHHHHHHHHhhcCCCCccC
Q 006276 579 NSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKVQYPLWPLR 640 (652)
Q Consensus 579 n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~kY~~~~f~~~ 640 (652)
|.|||.++-.+- ..++........+++||+.||+.++|+.-
T Consensus 85 ~~~~e~~~~~~~---------------------~~~~k~~yd~~v~~~y~~~ky~~~~~~~~ 125 (319)
T COG5347 85 NRFYEKNLLDQL---------------------LLPIKAKYDSSVAKKYIRKKYELKKFIDD 125 (319)
T ss_pred hhHhccCCCccc---------------------ccccccccCHHHHHHHHHHHHHhhhcccc
Confidence 999999987621 12334455667899999999999999874
No 26
>PLN03131 hypothetical protein; Provisional
Probab=99.97 E-value=4.9e-31 Score=282.02 Aligned_cols=123 Identities=20% Similarity=0.378 Sum_probs=108.7
Q ss_pred ccccCcccHHHHHHccCCCCccccCCCCCCCceeeccceeeeccchhhhcccCCCccceeEeecCCCCCCHHHHHHHHHh
Q 006276 494 RSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSL 573 (652)
Q Consensus 494 ~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~lg~~is~vks~~ld~~~w~~~~i~~~~~~ 573 (652)
+..++++++|+.|++.|+|+.|+|||+++|.|||+|+|||||+.|+||||.|| +|||||+|| .|++++|+.|+.+
T Consensus 5 kqqErnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLg---hRVKSVTLD--~WtdeEV~~Mk~g 79 (705)
T PLN03131 5 KEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFT---HRVKSVSMS--KFTSQDVEALQNG 79 (705)
T ss_pred HHHHHHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccC---cccccccCC--CCCHHHHHHHHHh
Confidence 44567899999999999999999999999999999999999999999999997 499999999 8999999999999
Q ss_pred chHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhccCCCCCCCCHHHHHHHHHHhhcCCCCccCCCC
Q 006276 574 GNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKVQYPLWPLRFNC 643 (652)
Q Consensus 574 GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~kY~~~~f~~~~~~ 643 (652)
||.++|++||++|++.. .++...+..+.+++|||.|||+|+|+.+...
T Consensus 80 GN~~AN~iyeanwd~~r----------------------~~lP~~sd~ekrr~FIR~KYVeKRFa~~~s~ 127 (705)
T PLN03131 80 GNQRAREIYLKDWDQQR----------------------QRLPDNSKVDKIREFIKDIYVDKKYAGGKTH 127 (705)
T ss_pred ccHHHHHHHHhhccccc----------------------CCCCCCccHHHHHHHHHHHHhhhhhhcCCCC
Confidence 99999999999998632 2222334456778999999999999998754
No 27
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.96 E-value=8.8e-29 Score=243.28 Aligned_cols=209 Identities=14% Similarity=0.156 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHH--hhCCCCCCCccccCchhHHHHHHHHHHHHHH
Q 006276 14 KQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALET--FGGGHNDPISVAFGGPVMTKFTIALREIGTY 91 (652)
Q Consensus 14 asv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~--f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~ 91 (652)
|+++||.+||+.+|+||+++++.+++++.++.++......|...+.+ +.++...++.+++ .+|.+|++++++++..
T Consensus 1 As~nhf~~Qi~~iE~Wl~~~~~~~~k~~~~~~~~e~~~nsfl~~~~p~~~~s~~vidqdYT~--~al~~f~~~l~e~~~~ 78 (214)
T cd07609 1 ASVNHFDDQVDAIEKWLDGYVSSTKKLYSSLDELERVINSFLSHLLPPLLVSGGVIDQDYTP--LALKRFGDGLKDFWGG 78 (214)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccchhCchhHH--HHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999988888887777888888854 5444444455664 3899999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHH
Q 006276 92 KEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFS 171 (652)
Q Consensus 92 ~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslD 171 (652)
....+.+.+..+++||++|++++|+++||.||+||++|++||++++||++++|+|+|..++|++.+|+++|++|.++|||
T Consensus 79 ll~~~~~~~~~~~~pL~~f~k~~i~~~Ke~rk~Fd~~q~kyD~~L~r~~~~sk~K~p~~l~Eda~qL~e~Rk~Y~~aSLD 158 (214)
T cd07609 79 VLSALKGNDSLILDPLRSFVKSDIRPYKELRKNFEYYQRKYDSMLARYVAQSKTKEPSSLREDAFQLFEARKAYLKASLD 158 (214)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhhhhhHHHHHHHHHHHHHHHHHH
Confidence 77888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Q 006276 172 LVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLH-QMEPYINQVLTYAQ 224 (652)
Q Consensus 172 yv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~-~l~~~l~el~~~lq 224 (652)
||.+|++++...+.-+++.+.+........+......+. .+..+++.++.|.+
T Consensus 159 yv~qi~~lq~~lDkllv~~~~~~wr~~~~~~~~~~~~~~~~~~~~~~ri~~W~~ 212 (214)
T cd07609 159 LVIAIPQLRLTLDKLLVDIITDLWREKKRTHDDSGSKFDPKWGEEMERIRGWSE 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999987777777644433333333223333 55666666666654
No 28
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.93 E-value=6.5e-27 Score=255.92 Aligned_cols=217 Identities=33% Similarity=0.544 Sum_probs=169.9
Q ss_pred CCceeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCc
Q 006276 290 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (652)
Q Consensus 290 ~~~~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 369 (652)
..++.+.|||..++-+ .|-|.+|. .+.+..|++...-. .+-||
T Consensus 189 p~pP~raG~lelrg~k-----ak~f~~vs-p~~vqL~knlq~f~---------------lgigi---------------- 231 (1186)
T KOG1117|consen 189 PVPPPRAGWLELRGFK-----AKLFVAVS-PERVQLYKNLQSFP---------------LGIGI---------------- 231 (1186)
T ss_pred CCCCCCccchhccccc-----cceeEEec-Cceeeeeccccccc---------------CCcee----------------
Confidence 3457889999988421 24455554 67777777764421 11222
Q ss_pred cccccceeecccceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC
Q 006276 370 KSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMGSGH 449 (652)
Q Consensus 370 ~~~~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~~~l~~~~~~~~~~~~~~~~~~ 449 (652)
..|.+-.|+|+. .++ -.|+++||.|.|-|.|+++.+++.|+.|++.+|+..++..
T Consensus 232 -----t~I~m~~~nvk~----vdr-~sfdl~Tp~r~fsftaese~erq~w~ea~q~siAeTlSd~--------------- 286 (1186)
T KOG1117|consen 232 -----TFIYMEVSNVKE----VDR-RSFDLNTPYREFSFTAESETERQIWGEAPQPSIAETLSDY--------------- 286 (1186)
T ss_pred -----EEEecccccccc----ccc-ceeccCCceeeeeeeeccchhhhhhhhccCcccccccChH---------------
Confidence 223444566653 233 4599999999999999999999999999998887544320
Q ss_pred CCCCCCCCCCCCCCCCcccchhhccccccccccccccccccchhccccCcccHHHHHHccCCCCccccCCCCCCCceeec
Q 006276 450 HRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLN 529 (652)
Q Consensus 450 ~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~ 529 (652)
.....+.....|+.|||||++.|+|+++|
T Consensus 287 ---------------------------------------------------evaeriW~ne~nr~cadC~ssrPdwasiN 315 (1186)
T KOG1117|consen 287 ---------------------------------------------------EVAERIWLNEENRECADCGSSRPDWASIN 315 (1186)
T ss_pred ---------------------------------------------------HHHHHHHhccccccccccCCCCCcccccc
Confidence 11234567778999999999999999999
Q ss_pred cceeeeccchhhhcccCCCccceeEeecCCCCCCHHHHHHHHHhchHHHHHHHHhhcccccccccCCCCCCCCCCCcchh
Q 006276 530 LGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQL 609 (652)
Q Consensus 530 ~gv~~C~~Cs~~Hr~lg~~is~vks~~ld~~~w~~~~i~~~~~~GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (652)
++|.||-.|+|-||+||.-+|+|+|++||++.|+.+.|++|..+||.++|.||-+++++.+.++++.+|
T Consensus 316 L~vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElfivlgn~~an~Fwa~nl~~~e~lh~dssp----------- 384 (1186)
T KOG1117|consen 316 LCVVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVLGNPRANRFWAGNLPPNEHLHPDSSP----------- 384 (1186)
T ss_pred cceEEcccCCCccccCCCccccccccccCcccccchhhhhheeecCcccccccccCCCCccccCCCCCc-----------
Confidence 999999999999999999999999999999999999999999999999999999999998766665443
Q ss_pred hccCCCCCCCCHHHHHHHHHHhhcCCCCccCCC
Q 006276 610 LLMGKPSHSDSISVKEKFIHAKVQYPLWPLRFN 642 (652)
Q Consensus 610 ~~~~~p~~~~~~~~~~~~i~~kY~~~~f~~~~~ 642 (652)
+.|.+||..||.+..|-..++
T Consensus 385 ------------~~r~~fi~~Kykeg~fRk~~~ 405 (1186)
T KOG1117|consen 385 ------------STRRQFIKEKYKEGKFRKEHP 405 (1186)
T ss_pred ------------chhhhHHHHHhhccccccccc
Confidence 357899999999988865443
No 29
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional
Probab=99.92 E-value=1.1e-25 Score=228.28 Aligned_cols=86 Identities=38% Similarity=0.702 Sum_probs=81.6
Q ss_pred ccHHHHHHccCCCCccccCCCCCCCceeeccceeeeccchhhhcccCCCccceeEeecCCCCCCHHHHHHHHHhchHHHH
Q 006276 500 EKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFAN 579 (652)
Q Consensus 500 ~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~lg~~is~vks~~ld~~~w~~~~i~~~~~~GN~~~n 579 (652)
.++++.|+..|+|+.|+|||+++|+|+|+|||||||++|+||||.||+||++|||++|| .|++++|+.|+.+||.++|
T Consensus 10 ~~vfrkL~~kPgNk~CaDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD--~Ws~eqL~~Mk~GGN~rA~ 87 (395)
T PLN03114 10 ISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLD--SWSSEQLKMMIYGGNNRAQ 87 (395)
T ss_pred HHHHHHHHhCcCCCcCccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCC--CCCHHHHHHHHHhcCHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHhhcc
Q 006276 580 SVWEELLQ 587 (652)
Q Consensus 580 ~~~e~~~~ 587 (652)
.+|+.+.-
T Consensus 88 ~fF~qhG~ 95 (395)
T PLN03114 88 VFFKQYGW 95 (395)
T ss_pred HHHHHcCC
Confidence 99987643
No 30
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.91 E-value=1.8e-25 Score=232.38 Aligned_cols=86 Identities=44% Similarity=0.746 Sum_probs=82.1
Q ss_pred ccHHHHHHccCCCCccccCCCCCCCceeeccceeeeccchhhhcccCCCccceeEeecCCCCCCHHHHHHHHHhchHHHH
Q 006276 500 EKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFAN 579 (652)
Q Consensus 500 ~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~lg~~is~vks~~ld~~~w~~~~i~~~~~~GN~~~n 579 (652)
+..++.|+..+.|++|+|||+++|+|+|++|||||||+||++||+|||||+.|||..|| .|+..++..|+-+||.+|+
T Consensus 11 ~~vfkkLRs~~~NKvCFDCgAknPtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLD--sWs~~qLR~M~~GGN~nA~ 88 (454)
T KOG0706|consen 11 QTVFKKLRSQSENKVCFDCGAKNPTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLD--SWSWEQLRRMQVGGNANAR 88 (454)
T ss_pred HHHHHHHhcCCCCceecccCCCCCCceeecceEEEEEecchhhhccccceEEEeecccc--cCCHHHHhHhhhcCchhHH
Confidence 55789999999999999999999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHhhcc
Q 006276 580 SVWEELLQ 587 (652)
Q Consensus 580 ~~~e~~~~ 587 (652)
.|+..+.-
T Consensus 89 ~FFkqhg~ 96 (454)
T KOG0706|consen 89 VFFKQHGC 96 (454)
T ss_pred HHHHHcCC
Confidence 99987654
No 31
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.91 E-value=8.1e-26 Score=227.37 Aligned_cols=86 Identities=37% Similarity=0.733 Sum_probs=78.0
Q ss_pred ccHHHHHHccCCCCccccCCCCCCCceeeccceeeeccchhhhcccCCCccceeEeecCCCCCCHHHHHHHHHhchHHHH
Q 006276 500 EKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFAN 579 (652)
Q Consensus 500 ~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~lg~~is~vks~~ld~~~w~~~~i~~~~~~GN~~~n 579 (652)
.+.|..|+...+|+.|+||++++|+|||++||||||.+|||+||.||||||.||||||| .|.+.+|+.|+++||.+++
T Consensus 7 rr~L~~lkp~deNk~CfeC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD--~wkeiel~kMeaGGN~~~~ 84 (386)
T KOG0704|consen 7 RRVLLELKPQDENKKCFECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMD--KWKEIELKKMEAGGNERFR 84 (386)
T ss_pred HHHHHhcCccccCCceeecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecc--cccHHHHHHHHhccchhHH
Confidence 44455555555999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHhhcc
Q 006276 580 SVWEELLQ 587 (652)
Q Consensus 580 ~~~e~~~~ 587 (652)
.|++..-.
T Consensus 85 eFL~s~~~ 92 (386)
T KOG0704|consen 85 EFLSSQGI 92 (386)
T ss_pred HHHhhCcc
Confidence 99976643
No 32
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-25 Score=234.48 Aligned_cols=123 Identities=37% Similarity=0.699 Sum_probs=112.1
Q ss_pred cCCCCccccCCCCCCCceeeccceeeeccchhhhcccCCCccceeEeecCCCCCCHHHHHHHHHhchHHHHHHHHhhccc
Q 006276 509 VCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQS 588 (652)
Q Consensus 509 ~~~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~lg~~is~vks~~ld~~~w~~~~i~~~~~~GN~~~n~~~e~~~~~ 588 (652)
....++|+|||+++|.|+|+|-|+|+|.+|..+||+||.|||.||+|... .|.++.|+++..+.|..+|.|||+.+-+
T Consensus 5 ~l~~evC~DC~~~dp~WASvnrGt~lC~eCcsvHrsLGrhIS~vrhLR~s--~W~pt~l~~V~tLn~~gaNsIWEh~Lld 82 (669)
T KOG0818|consen 5 LLSSEVCADCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLRHT--PWPPTLLQMVETLNNNGANSIWEHSLLD 82 (669)
T ss_pred chhhhhhcccCCCCCcceeecCceEehHhhhHHHhhhcchHHHHHHhccC--CCCHHHHHHHHHHHhcCcchhhhhhccC
Confidence 34568999999999999999999999999999999999999999999987 8999999999999999999999999988
Q ss_pred ccccccCCCCCCCCCCCcchhhccCCCCCCCCH-HHHHHHHHHhhcCCCCccCCCCCCCCcc
Q 006276 589 RSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSI-SVKEKFIHAKVQYPLWPLRFNCFMHNCI 649 (652)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~i~~kY~~~~f~~~~~~~~~~~~ 649 (652)
+..... ..+||+|.|.. +.|++|||+||+...|+++++|.|+++|
T Consensus 83 ~st~~s----------------g~rk~~pqD~~Hp~K~eFIkaKy~~LtFv~~~~~rDdD~~ 128 (669)
T KOG0818|consen 83 PATIMS----------------GRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSV 128 (669)
T ss_pred chhhhc----------------ccCCCCCcCCCCccHHHHHHHHHHheeeeccCCCCCcchh
Confidence 543221 26899999987 5999999999999999999999999976
No 33
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.82 E-value=2.7e-18 Score=167.25 Aligned_cols=191 Identities=30% Similarity=0.425 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHM 102 (652)
Q Consensus 23 le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~ 102 (652)
++.++++++++++.++.|.++..+...+...|+.+|..++......... .++.++..|+.+++++...+..+..++...
T Consensus 2 ~~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 80 (194)
T cd07307 2 LDELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNT-DLGEALEKFGKIQKELEEFRDQLEQKLENK 80 (194)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999998888888899999999998765443321 235689999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-ChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 103 LNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT-KTDVAAILEEELHSARSAFEQARFSLVTALSNVEA 181 (652)
Q Consensus 103 i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k-~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~ 181 (652)
++.||..|++.+++.+++.+|+|++.+.+||++++++.++++++ .+..+.+++.++..+|..|...+.+|+..|+.+..
T Consensus 81 v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~ 160 (194)
T cd07307 81 VIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEE 160 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987765 56778899999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006276 182 KKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (652)
Q Consensus 182 ~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~ 214 (652)
.+..+++..|..|+.+|..||+++++.+.++.|
T Consensus 161 ~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~~ 193 (194)
T cd07307 161 KRKELFLSLLLSFIEAQSEFFKEVLKILEQLLP 193 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 999899999999999999999999999888765
No 34
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.75 E-value=7e-18 Score=147.97 Aligned_cols=95 Identities=27% Similarity=0.476 Sum_probs=74.6
Q ss_pred eeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccc
Q 006276 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (652)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (652)
++|+|||.|+++.. +.|+||||+|+ ++.|+||+++... .
T Consensus 2 v~k~G~L~Kkg~~~-k~WkkRwfvL~-~~~L~yyk~~~~~---------------------------------------~ 40 (100)
T cd01233 2 VSKKGYLNFPEETN-SGWTRRFVVVR-RPYLHIYRSDKDP---------------------------------------V 40 (100)
T ss_pred cceeEEEEeeCCCC-CCcEEEEEEEE-CCEEEEEccCCCc---------------------------------------c
Confidence 57999999997654 89999999999 6778888775431 2
Q ss_pred ccceeecccceeeeCCCCC---CCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006276 373 ARHTVNLLTSTIKVDADQS---DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (652)
Q Consensus 373 ~~~~i~l~~~~vk~~~~~~---~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~ 428 (652)
+.+.|+|..+.+....+.. .+++||+|.+++|+|+|+|+|++|+++||.+|+..++
T Consensus 41 ~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 41 ERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred EeeEEEecccEEEEccchhhhcCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhhc
Confidence 2356777767666543321 3679999999999999999999999999999987753
No 35
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.74 E-value=1e-17 Score=147.59 Aligned_cols=94 Identities=20% Similarity=0.507 Sum_probs=68.7
Q ss_pred eeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccccc
Q 006276 295 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 374 (652)
Q Consensus 295 k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 374 (652)
|+|||.|+++...++|+||||+|+ ++.|+||+++.+. .+.
T Consensus 1 KeG~L~K~g~~~~k~wkkRwFvL~-~~~L~Yyk~~~d~---------------------------------------~~~ 40 (103)
T cd01251 1 KEGFMEKTGPKHTEGFKKRWFTLD-DRRLMYFKDPLDA---------------------------------------FAK 40 (103)
T ss_pred CceeEEecCCCCCCCceeEEEEEe-CCEEEEECCCCCc---------------------------------------CcC
Confidence 689999997655689999999998 6778888776431 122
Q ss_pred ceeecccc----eeeeC-CC--CCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006276 375 HTVNLLTS----TIKVD-AD--QSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (652)
Q Consensus 375 ~~i~l~~~----~vk~~-~~--~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~ 428 (652)
+.|+|-.+ .|... ++ ..+..+||+|.+|+|+|+|+|+|++||++||+||+.++.
T Consensus 41 G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 41 GEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred cEEEeeccccceeEeccCCccccccccceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 33444322 22211 11 223346999999999999999999999999999999975
No 36
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.73 E-value=1.6e-17 Score=143.99 Aligned_cols=93 Identities=18% Similarity=0.402 Sum_probs=68.9
Q ss_pred eeEEEeccCCC--CCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccc
Q 006276 295 RQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (652)
Q Consensus 295 k~G~L~K~~~~--~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (652)
.+|||-|+++. ..++|+||||+|+ ++.|+|++..... ..
T Consensus 2 ~~G~l~k~~g~~r~~K~WkrRwF~L~-~~~L~y~K~~~~~--------------------------------------~~ 42 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRWKTRYFTLS-GAQLLFQKGKSKD--------------------------------------DP 42 (101)
T ss_pred cceEEeecCccceeeecceeEEEEEe-CCEEEEEeccCcc--------------------------------------CC
Confidence 48999999774 6799999999999 5667777654321 01
Q ss_pred ccceeecccceeeeCCCCC----CCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006276 373 ARHTVNLLTSTIKVDADQS----DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 373 ~~~~i~l~~~~vk~~~~~~----~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
..+.|+|..|......++. +++|||+|.+|+|+|+|+|+|++|+++||++|+.|
T Consensus 43 ~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 43 DDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred CCceEEcccceEEeeccccccccccCcEEEEEcCCceEEEEeCCHHHHHHHHHHHHhh
Confidence 1245666655432222221 33699999999999999999999999999999876
No 37
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.72 E-value=3.1e-17 Score=143.57 Aligned_cols=92 Identities=24% Similarity=0.462 Sum_probs=70.5
Q ss_pred eeEEEeccCCC--------CCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCC
Q 006276 295 RQGYLSKRSSN--------LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV 366 (652)
Q Consensus 295 k~G~L~K~~~~--------~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 366 (652)
++|||+|...+ ..++|+||||||+++|+|+|+++...
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~----------------------------------- 45 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMP----------------------------------- 45 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCC-----------------------------------
Confidence 47999999854 35899999999998899999865421
Q ss_pred CCccccccceeecccceeeeCCC-CCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHH
Q 006276 367 HDEKSAARHTVNLLTSTIKVDAD-QSDLRFCFRIISPTKNYTLQAESALDQMDWIEKIT 424 (652)
Q Consensus 367 ~~~~~~~~~~i~l~~~~vk~~~~-~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~ 424 (652)
...+.+.|+|..|.....++ ...+.|||+|++|+|+|+|.|+|++|+++||.+|.
T Consensus 46 ---~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 46 ---TTLPQGTIDMNQCTDVVDAEARTGQKFSICILTPDKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred ---CcccceEEEccceEEEeecccccCCccEEEEECCCceEEEEeCCHHHHHHHHHHHH
Confidence 12334667776665433332 23446999999999999999999999999999985
No 38
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.70 E-value=7.2e-17 Score=140.13 Aligned_cols=90 Identities=26% Similarity=0.399 Sum_probs=72.1
Q ss_pred eEEEeccCCC-CCCCceeEEEEEecC-ceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccccc
Q 006276 296 QGYLSKRSSN-LRGDWKRRFFVLDSR-GMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (652)
Q Consensus 296 ~G~L~K~~~~-~~~~WkrR~f~L~~~-g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 373 (652)
+|||.|+++. ..+.|+||||||+++ +.|+||+++.+ ..+
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d---------------------------------------~~p 42 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQD---------------------------------------AKP 42 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCc---------------------------------------ccc
Confidence 6999999753 468999999999864 68999987643 124
Q ss_pred cceeecccceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006276 374 RHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 374 ~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
.+.|+|..+++...+ .+++++|+|++++|+|+|+|+|++||++||+||+.+
T Consensus 43 ~G~I~L~~~~~~~~~--~~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 43 LGRVDLSGAAFTYDP--REEKGRFEIHSNNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred cceEECCccEEEcCC--CCCCCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhh
Confidence 466777776665432 235789999999999999999999999999999876
No 39
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.68 E-value=1.4e-16 Score=141.06 Aligned_cols=95 Identities=21% Similarity=0.389 Sum_probs=68.0
Q ss_pred eeeEEEeccCCCC----CCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCc
Q 006276 294 IRQGYLSKRSSNL----RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (652)
Q Consensus 294 ~k~G~L~K~~~~~----~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 369 (652)
+|+|||+|++.+. +++|++|||+|+ ++.|+||+++...
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~-~~~L~Yyk~~~~~------------------------------------- 42 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLT-KSKLSYYEGDFEK------------------------------------- 42 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEc-CCEEEEECCCccc-------------------------------------
Confidence 4799999997432 359999999997 7788888765421
Q ss_pred cccccceeeccccee-eeCCCCC------CCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006276 370 KSAARHTVNLLTSTI-KVDADQS------DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 370 ~~~~~~~i~l~~~~v-k~~~~~~------~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
...+.+.|+|..+.. ....+.. .+.+||+|++++++|+|+|+|++|+++||.||+.+
T Consensus 43 ~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 43 RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred ccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHhC
Confidence 112334555544322 2111111 35799999999999999999999999999999863
No 40
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.67 E-value=4.3e-16 Score=133.93 Aligned_cols=88 Identities=27% Similarity=0.488 Sum_probs=70.4
Q ss_pred eEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccccccc
Q 006276 296 QGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARH 375 (652)
Q Consensus 296 ~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 375 (652)
+|||.|++ +..++|++|||||+ +|.|+||+++... ...+.+
T Consensus 2 ~G~L~K~~-~~~k~Wk~RwFvL~-~g~L~Yyk~~~~~-------------------------------------~~~~~G 42 (91)
T cd01247 2 NGVLSKWT-NYINGWQDRYFVLK-EGNLSYYKSEAEK-------------------------------------SHGCRG 42 (91)
T ss_pred ceEEEEec-cccCCCceEEEEEE-CCEEEEEecCccC-------------------------------------cCCCcE
Confidence 69999995 56699999999997 7888888876431 112457
Q ss_pred eeecccceeeeCCCCCCCcccEEEEeCC-eeEEEEeCCHHHHHHHHHHHHH
Q 006276 376 TVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITG 425 (652)
Q Consensus 376 ~i~l~~~~vk~~~~~~~rrfcF~I~t~~-r~~~lqA~se~e~~~Wi~ai~~ 425 (652)
.|+|..|.+... . .++++|+|.+.. ++|+|.|+|++|+++||.||+.
T Consensus 43 ~I~L~~~~i~~~--~-~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 43 SIFLKKAIIAAH--E-FDENRFDISVNENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEECcccEEEcC--C-CCCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 788888877643 2 336899997766 9999999999999999999975
No 41
>smart00721 BAR BAR domain.
Probab=99.66 E-value=1.4e-14 Score=147.35 Aligned_cols=201 Identities=24% Similarity=0.366 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhcccchHHHHHHHHHHhhCC--CCCCCc-cccCchhHHHHHHHHHHHH
Q 006276 16 IQGLEESAEVLRERSLKFYKGCRKYT---EGLGEGYDGDIAFASALETFGGG--HNDPIS-VAFGGPVMTKFTIALREIG 89 (652)
Q Consensus 16 v~~~E~~le~l~~~l~kl~K~~kk~~---~~~~~~~~~~~~f~~~L~~f~~~--~~d~~~-~~~~g~~L~~f~~~lkel~ 89 (652)
+..+|.+++.++.++++++|.++.|. +++.....++..|...+..+..+ ..++.. ....+.+|..++.++.++.
T Consensus 29 f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 108 (239)
T smart00721 29 FEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEALKKLL 108 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999 77777766778888888776443 111111 1112568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-h--hhHhHHHHHHHHHHHHHH
Q 006276 90 TYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTK-T--DVAAILEEELHSARSAFE 166 (652)
Q Consensus 90 ~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~-~--~~~~E~~~eL~~~Rk~f~ 166 (652)
..+..+ .++...++.|+.+++..+++.++..++++++.+.+||++..++.++.++++ + ..+.+++.+|..++..|.
T Consensus 109 ~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe 187 (239)
T smart00721 109 QVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFE 187 (239)
T ss_pred hhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH
Confidence 999999 999999999999999999999999999999999999999999987765432 1 267888999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006276 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYIN 217 (652)
Q Consensus 167 ~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~ 217 (652)
....+++..|..+.......++..+..|+.+|..||+++++.+.++.+++.
T Consensus 188 ~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 188 ESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998887679999999999999999999999999998874
No 42
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.66 E-value=5.3e-16 Score=135.10 Aligned_cols=91 Identities=27% Similarity=0.557 Sum_probs=71.1
Q ss_pred eeEEEeccCCC---CCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccc
Q 006276 295 RQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (652)
Q Consensus 295 k~G~L~K~~~~---~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 371 (652)
++|||+|+++. ..+.|++|||+|. ++.|+||+++.+.
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~-~~~L~yyk~~~~~--------------------------------------- 41 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLK-GTTLYWYRSKQDE--------------------------------------- 41 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEE-CCEEEEECCCCCC---------------------------------------
Confidence 58999999643 3469999999999 6778888776431
Q ss_pred cccceeecccceeeeCCCCCCCcccEEEEeCC-eeEEEEeCCHHHHHHHHHHHHHH
Q 006276 372 AARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 372 ~~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~-r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
.+.+.|.|..+.|... .+..++|||.|++|+ ++|+|+|+|++|+++||.+|++|
T Consensus 42 ~~~~~I~L~~~~v~~~-~~~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 42 KAEGLIFLSGFTIESA-KEVKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred ccceEEEccCCEEEEc-hhcCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 1234566666666543 334588999999998 99999999999999999999864
No 43
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.65 E-value=5.9e-16 Score=133.75 Aligned_cols=94 Identities=40% Similarity=0.728 Sum_probs=71.6
Q ss_pred eeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccccc
Q 006276 295 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 374 (652)
Q Consensus 295 k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 374 (652)
|+|||.|+++...+.|++|||+|+ ++.|+||+++... ...+.
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~-~~~l~~y~~~~~~-------------------------------------~~~~~ 42 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLK-NGQLTYHHRLKDY-------------------------------------DNAHV 42 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEe-CCeEEEEcCCccc-------------------------------------ccccc
Confidence 589999997654688999999999 6777777665421 01122
Q ss_pred ceeecccceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006276 375 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 375 ~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
+.|++..+.+....+..++++||+|++++++|+|+|+|++|+++||.||+++
T Consensus 43 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 43 KEIDLRRCTVRHNGKQPDRRFCFEVISPTKTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred eEEeccceEEecCccccCCceEEEEEcCCcEEEEECCCHHHHHHHHHHHhcC
Confidence 4466666666654443347899999999999999999999999999999753
No 44
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.63 E-value=1.7e-15 Score=132.12 Aligned_cols=94 Identities=21% Similarity=0.364 Sum_probs=70.3
Q ss_pred eeeeEEEeccCCCCCCCceeEEEEEecCc-----eEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCC
Q 006276 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRG-----MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH 367 (652)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrR~f~L~~~g-----~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 367 (652)
+.++|||.|+ ++|+||||||+.+. .|.||+++.+-...
T Consensus 2 v~k~GyL~K~-----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~-------------------------------- 44 (101)
T cd01257 2 VRKSGYLRKQ-----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQK-------------------------------- 44 (101)
T ss_pred ccEEEEEeEe-----cCcEeEEEEEecCCCCCCceEEEECChhhcccc--------------------------------
Confidence 5799999998 78999999999542 79999887541100
Q ss_pred CccccccceeecccceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHH
Q 006276 368 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITG 425 (652)
Q Consensus 368 ~~~~~~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ 425 (652)
...+.+.|.|..|..-....+..++|+|+|.||+++|+|+|+|++|+++||.+|..
T Consensus 45 --~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 45 --GSAPKRVIPLESCFNINKRADAKHRHLIALYTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred --CCCceEEEEccceEEEeeccccccCeEEEEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 01244667777665332222334569999999999999999999999999999853
No 45
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.63 E-value=6.2e-16 Score=133.19 Aligned_cols=99 Identities=25% Similarity=0.474 Sum_probs=70.2
Q ss_pred eeEEEeccCCC-CCCCceeEEEEEec-CceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccc
Q 006276 295 RQGYLSKRSSN-LRGDWKRRFFVLDS-RGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (652)
Q Consensus 295 k~G~L~K~~~~-~~~~WkrR~f~L~~-~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (652)
|+|||+++.+. ++.+|.|+||+.+. ++++.+..-.... .. ...|.+ .
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s-------------~~-------------~~~g~v-----~ 49 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKT-------------KT-------------DMKGAV-----A 49 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEeccccc-------------cc-------------ccCccc-----c
Confidence 58999999865 45589999999875 3454332111000 00 000112 1
Q ss_pred ccceeecccceeeeCCCCCCCcccEEEEeCCe--eEEEEeCCHHHHHHHHHHHHH
Q 006276 373 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTK--NYTLQAESALDQMDWIEKITG 425 (652)
Q Consensus 373 ~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r--~~~lqA~se~e~~~Wi~ai~~ 425 (652)
..+.++|..|++++ .+++||||||+|+++++ +++|||+|+.|+.+||+||++
T Consensus 50 ~~e~~~l~sc~~r~-~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~dg 103 (104)
T cd01249 50 QDETLTLKSCSRRK-TESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMDG 103 (104)
T ss_pred cceEEeeeeccccc-cCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhcC
Confidence 23567888899885 68889999999999987 899999999999999999874
No 46
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.62 E-value=2.8e-15 Score=131.61 Aligned_cols=92 Identities=29% Similarity=0.539 Sum_probs=68.1
Q ss_pred eEEEeccCCCCCCCceeEEEEEecC-ceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccccc
Q 006276 296 QGYLSKRSSNLRGDWKRRFFVLDSR-GMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 374 (652)
Q Consensus 296 ~G~L~K~~~~~~~~WkrR~f~L~~~-g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 374 (652)
+|||.|+++ ..+.|++|||+|.++ +.|+||+++... .+.
T Consensus 2 ~G~L~K~g~-~~k~WkkRwFvL~~~~~~L~Yy~~~~~~---------------------------------------~~~ 41 (101)
T cd01235 2 EGYLYKRGA-LLKGWKPRWFVLDPDKHQLRYYDDFEDT---------------------------------------AEK 41 (101)
T ss_pred eEEEEEcCC-CCCCccceEEEEECCCCEEEEecCCCCC---------------------------------------ccc
Confidence 799999965 559999999999864 588898876431 122
Q ss_pred ceeecccce-eeeC------CCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006276 375 HTVNLLTST-IKVD------ADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (652)
Q Consensus 375 ~~i~l~~~~-vk~~------~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai 427 (652)
+.|+|..++ +... +....+.++|.|.++.|+|+|+|+|++|+++||.+|+++|
T Consensus 42 g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 42 GCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred eEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 344544322 2111 1222457899999999999999999999999999999875
No 47
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=99.61 E-value=3.1e-13 Score=135.60 Aligned_cols=195 Identities=30% Similarity=0.456 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHH-------HHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHH
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDI-------AFASALETFGGGHNDPISVAFGGPVMTKFTIALRE 87 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~-------~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lke 87 (652)
.+...++++..++.++.++.+.+++|.++...+..... .|+++|..++....+.... |.++..|+....+
T Consensus 27 ~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~l~~~~~~~~~ 103 (229)
T PF03114_consen 27 EFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSSL---GNALEKFGEAMQE 103 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccchh---hhHHHHHHHHHHH
Confidence 46677888899999999999999999888777766666 8888888887655444432 4689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHH
Q 006276 88 IGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQ 167 (652)
Q Consensus 88 l~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~ 167 (652)
|......+...+...++.||..|+ .+++.++..++++++...+||.+..++.++.+++..... +.++..++..|..
T Consensus 104 i~~~~~~~~~~~~~~vi~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~---~~~l~~a~~~f~~ 179 (229)
T PF03114_consen 104 IEEARKELESQIESTVIDPLKEFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSK---EEKLEEAKEEFEA 179 (229)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc---HHHHHHHHHHHHH
Confidence 999999999999999999999999 889999999999999999999999999998876554322 6789999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006276 168 ARFSLVTALSNVEAKKRFEFL-EAVSGTMDAHLRYFKQGYELLHQMEPYIN 217 (652)
Q Consensus 168 aslDyv~~l~~l~~~k~~e~l-e~l~~~~~aq~~ff~~g~e~~~~l~~~l~ 217 (652)
...++...|..+..... +++ ..+..|+.+|..||+++++.+.++.|.+.
T Consensus 180 ~~~~l~~~l~~l~~~~~-~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l~ 229 (229)
T PF03114_consen 180 LNEELKEELPKLFAKRQ-DILEPCLQSFIEAQLQYFQQLYQILEELQPQLA 229 (229)
T ss_dssp HHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999987765 666 99999999999999999999999988763
No 48
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.60 E-value=7.6e-15 Score=134.21 Aligned_cols=93 Identities=30% Similarity=0.638 Sum_probs=71.9
Q ss_pred eeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccccc
Q 006276 294 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (652)
Q Consensus 294 ~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 373 (652)
.|+|||.|+++. .+.|++|||+|. ++.|+||+++... .+
T Consensus 1 ~k~G~L~K~~~~-~~~WkkRwfvL~-~~~L~yyk~~~~~---------------------------------------~~ 39 (125)
T cd01252 1 DREGWLLKQGGR-VKTWKRRWFILT-DNCLYYFEYTTDK---------------------------------------EP 39 (125)
T ss_pred CcEEEEEEeCCC-CCCeEeEEEEEE-CCEEEEEcCCCCC---------------------------------------Cc
Confidence 378999999654 489999999998 5677888765421 23
Q ss_pred cceeecccceeeeCCCCCCCcccEEEEeCC---------------------eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006276 374 RHTVNLLTSTIKVDADQSDLRFCFRIISPT---------------------KNYTLQAESALDQMDWIEKITGVIA 428 (652)
Q Consensus 374 ~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~---------------------r~~~lqA~se~e~~~Wi~ai~~ai~ 428 (652)
.+.|.|..+.|... +...+++||+|.+++ ++|+|+|+|++|+.+||.||+.+|.
T Consensus 40 ~g~I~L~~~~v~~~-~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 40 RGIIPLENVSIREV-EDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred eEEEECCCcEEEEc-ccCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 45567766666653 334678999998866 4788999999999999999999875
No 49
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.59 E-value=3.9e-15 Score=128.72 Aligned_cols=91 Identities=21% Similarity=0.302 Sum_probs=70.5
Q ss_pred eeEEEeccCCCCCCCceeEEEEEec---CceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccc
Q 006276 295 RQGYLSKRSSNLRGDWKRRFFVLDS---RGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (652)
Q Consensus 295 k~G~L~K~~~~~~~~WkrR~f~L~~---~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 371 (652)
+.|||.|+++...+.|++|||+|.+ ++.|+|++++...
T Consensus 1 ~~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~--------------------------------------- 41 (98)
T cd01245 1 KKGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKT--------------------------------------- 41 (98)
T ss_pred CCCccccCCCCcccccceeEEEEecCCCCceEEEEcCCCCC---------------------------------------
Confidence 3699999987647999999999973 4889998776532
Q ss_pred cccceeecccceeeeCCCC-CCCcccEEEEeCCe--eEEEEeCCHHHHHHHHHHHHH
Q 006276 372 AARHTVNLLTSTIKVDADQ-SDLRFCFRIISPTK--NYTLQAESALDQMDWIEKITG 425 (652)
Q Consensus 372 ~~~~~i~l~~~~vk~~~~~-~~rrfcF~I~t~~r--~~~lqA~se~e~~~Wi~ai~~ 425 (652)
.+.+.|++..+.|++..+. .+|+|||+|.++.+ +|+++|++ +|+++||.+|+.
T Consensus 42 ~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 42 KPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CccceeeccccEEEEccccccCCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 1223456666777764332 37889999999986 89999999 999999999974
No 50
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=99.59 E-value=5.3e-13 Score=132.97 Aligned_cols=193 Identities=14% Similarity=0.240 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------h--------hcccchHHHHHHHHHHhhCCCCCCCccccCchh
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTEG---------L--------GEGYDGDIAFASALETFGGGHNDPISVAFGGPV 77 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~~---------~--------~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~ 77 (652)
-+..+|.+++..+.|++++.+....|.+- + ..-+...+.+..++...|..+.++.. .|.+
T Consensus 18 df~~le~~~d~~~~~~e~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e~Lg~~M~~~g~~lg~~S~---~g~a 94 (229)
T cd07594 18 HFENLLQRADKTKVWTEKILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLEQLGQAMIEAGNDFGPGTA---YGSA 94 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHhhCCCCCc---hHHH
Confidence 35678999999999999999999887651 1 01122235666777666665544433 3679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHH
Q 006276 78 MTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEE 157 (652)
Q Consensus 78 L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~e 157 (652)
|..||.+.+.|+..+..+...+...++.||++|+..+|+.+...||+.+..+.+||++..|+.+.+ .++.....+.+
T Consensus 95 L~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k~r~~kAk---~~~~~~~~e~e 171 (229)
T cd07594 95 LIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDACKTRVKKAK---SAEAIEQAEQD 171 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CccchhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975543 33333456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006276 158 LHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (652)
Q Consensus 158 L~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~ 214 (652)
|..+...|.++.-+....|..+... +.+.+..|..|+.||..||+++++.+.++.+
T Consensus 172 lr~Ae~kF~~~~E~a~~~M~~i~~~-~~~~~~~L~~lv~AQl~Yh~q~~e~L~~l~~ 227 (229)
T cd07594 172 LRVAQSEFDRQAEITKLLLEGISST-HANHLRCLRDFVEAQMTYYAQCYQYMDDLQR 227 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998875 3489999999999999999999999988765
No 51
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.58 E-value=1.2e-14 Score=129.35 Aligned_cols=92 Identities=23% Similarity=0.415 Sum_probs=66.5
Q ss_pred eEEEeccCCC---CCCCceeEEEEEecCce------EEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCC
Q 006276 296 QGYLSKRSSN---LRGDWKRRFFVLDSRGM------LYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV 366 (652)
Q Consensus 296 ~G~L~K~~~~---~~~~WkrR~f~L~~~g~------l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 366 (652)
+|||.|+++. ..++|+||||+|+++++ |+||+++...
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~---------------------------------- 47 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKF---------------------------------- 47 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCC----------------------------------
Confidence 7999999653 24699999999997665 7888776431
Q ss_pred CCccccccceeecccceeeeC-----CCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006276 367 HDEKSAARHTVNLLTSTIKVD-----ADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 367 ~~~~~~~~~~i~l~~~~vk~~-----~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
.+.+.|+|..+.+... .......|+|.|.++.|+|+|.|+|++||++||.+|+..
T Consensus 48 -----k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 48 -----KLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred -----ccceEEECCccEEEcccccccccCcccceEEEEEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence 2234556555443211 111123578999999999999999999999999999754
No 52
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.55 E-value=3e-14 Score=122.26 Aligned_cols=90 Identities=30% Similarity=0.562 Sum_probs=69.5
Q ss_pred eeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccccc
Q 006276 295 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 374 (652)
Q Consensus 295 k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 374 (652)
++|||+|+++. .+.|++|||+|+ ++.|+||+++... ...+.
T Consensus 1 ~~G~L~k~~~~-~~~W~~r~~vl~-~~~L~~~~~~~~~-------------------------------------~~~~~ 41 (91)
T cd01246 1 VEGWLLKWTNY-LKGWQKRWFVLD-NGLLSYYKNKSSM-------------------------------------RGKPR 41 (91)
T ss_pred CeEEEEEeccc-CCCceeeEEEEE-CCEEEEEecCccC-------------------------------------CCCce
Confidence 48999999654 489999999999 7788888776431 01234
Q ss_pred ceeecccceeeeCCCCCCCcccEEEEeCC-eeEEEEeCCHHHHHHHHHHHHHH
Q 006276 375 HTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 375 ~~i~l~~~~vk~~~~~~~rrfcF~I~t~~-r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
+.+.+..|.+... ..++++|.|.+++ ++|+|+|+|++|+.+||.||++|
T Consensus 42 ~~i~l~~~~~~~~---~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 42 GTILLSGAVISED---DSDDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred EEEEeceEEEEEC---CCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence 5566766766542 2347999999998 99999999999999999999864
No 53
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=99.52 E-value=6.3e-12 Score=124.25 Aligned_cols=189 Identities=21% Similarity=0.300 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc---------chHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHH
Q 006276 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGY---------DGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALR 86 (652)
Q Consensus 16 v~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~---------~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lk 86 (652)
...+|.+++..+..++++.+.+..|++.+.+.. .....+...+...|..+.++..+ |.+|..||.+..
T Consensus 9 f~~le~~~d~~~~~~~~l~~~~~~y~~~l~k~~~~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~~---G~aL~~~G~a~~ 85 (215)
T cd07593 9 FLELEKEIELRKEGMERLHRSTEAYVEYLSKKKPLLDDKDKCLPVEALGLVMINHGEEFPQDSEY---GSCLSKLGRAHC 85 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccCChHHHHHHHHHHHHhhCCCCChH---HHHHHHHHHHHH
Confidence 567899999999999999999999988665553 12466666676666655444333 679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHH
Q 006276 87 EIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFE 166 (652)
Q Consensus 87 el~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~ 166 (652)
.|+.....+...+...++.||.+|+. +++.+...||+.+..+.+||++.+|+.+.++.. ...+.+|..+...|.
T Consensus 86 kia~~q~~f~~~~~~~~l~pL~~~l~-~~k~i~k~RKkLe~rRLdyD~~ksk~~kak~~~-----~~~eeElr~Ae~kfe 159 (215)
T cd07593 86 KIGTLQEEFADRLSDTFLANIERSLA-EMKEYHSARKKLESRRLAYDAALTKSQKAKKED-----SRLEEELRRAKAKYE 159 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHHHHHHH
Confidence 99999999999999999999999995 899999999999999999999999988775442 245778999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006276 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (652)
Q Consensus 167 ~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~ 214 (652)
++.-+....|..+... +.+.+..|..|+.||..||+++.+++.++..
T Consensus 160 es~E~a~~~M~~i~~~-e~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~ 206 (215)
T cd07593 160 ESSEDVEARMVAIKES-EADQYRDLTDLLDAELDYHQQSLDVLREVRQ 206 (215)
T ss_pred HHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876 3589999999999999999999999987643
No 54
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.52 E-value=9.7e-14 Score=121.90 Aligned_cols=99 Identities=19% Similarity=0.298 Sum_probs=74.3
Q ss_pred eeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccc
Q 006276 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (652)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (652)
.+|+|||.|.+... +.|+.|||+|.++ +|.|++..... .+....
T Consensus 2 ~ikeG~L~K~~~~~-~~~k~RyffLFnd-~Ll~~~~~~~~----------------------------------~~~~y~ 45 (101)
T cd01219 2 LLKEGSVLKISSTT-EKTEERYLFLFND-LLLYCVPRKMI----------------------------------GGSKFK 45 (101)
T ss_pred cccceEEEEEecCC-CCceeEEEEEeCC-EEEEEEccccc----------------------------------CCCcEE
Confidence 47899999996544 7899999999977 55555432110 011223
Q ss_pred ccceeecccceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006276 373 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (652)
Q Consensus 373 ~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~ 428 (652)
..+.+++..+.|.. .++.+.+|+|.|.+++++|+|+|+|++|+++||.||+.+|.
T Consensus 46 ~~~~i~l~~~~v~~-~~~~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 46 VRARIDVSGMQVCE-GDNLERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEEEEecccEEEEe-CCCCCcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 34567777777763 34456789999999999999999999999999999999985
No 55
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.51 E-value=9e-14 Score=122.34 Aligned_cols=95 Identities=21% Similarity=0.399 Sum_probs=62.0
Q ss_pred eeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCC-CCCCCCCCcccccCcccccccccccccccccCCCCCCccc
Q 006276 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (652)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 371 (652)
++|+|||.|+++ ..+.|++|||+|++++.|+||++... ...+ .
T Consensus 1 v~k~G~L~K~g~-~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~-----------------------------------~ 44 (102)
T cd01241 1 VVKEGWLHKRGE-YIKTWRPRYFLLKSDGSFIGYKEKPEDGDPF-----------------------------------L 44 (102)
T ss_pred CcEEEEEEeecC-CCCCCeeEEEEEeCCCeEEEEecCCCccCcc-----------------------------------c
Confidence 369999999965 55999999999996676665554322 1000 0
Q ss_pred cccceeecccceeeeCCCCCCCcccEEEEe------CCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006276 372 AARHTVNLLTSTIKVDADQSDLRFCFRIIS------PTKNYTLQAESALDQMDWIEKITGVI 427 (652)
Q Consensus 372 ~~~~~i~l~~~~vk~~~~~~~rrfcF~I~t------~~r~~~lqA~se~e~~~Wi~ai~~ai 427 (652)
.+...+.+..|.+.. . +..++++|.|.. +.| +|+|+|++||++||.||+.++
T Consensus 45 i~l~~~~v~~~~~~~-~-~~~~~~~F~i~~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v~ 102 (102)
T cd01241 45 PPLNNFSVAECQLMK-T-ERPRPNTFIIRCLQWTTVIER--TFHVESPEEREEWIHAIQTVA 102 (102)
T ss_pred cccCCeEEeeeeeee-c-cCCCcceEEEEeccCCcccCE--EEEeCCHHHHHHHHHHHHhhC
Confidence 011122333444432 2 235678999982 344 557999999999999998763
No 56
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.50 E-value=2.6e-13 Score=118.19 Aligned_cols=97 Identities=33% Similarity=0.659 Sum_probs=75.6
Q ss_pred eeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccc
Q 006276 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (652)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (652)
++++|||.+++ ...+.|++|||+|. ++.|+||+++... ....
T Consensus 1 ~~~~G~L~~~~-~~~~~wk~r~~vL~-~~~L~~~~~~~~~------------------------------------~~~~ 42 (104)
T PF00169_consen 1 CIKEGWLLKKS-SSRKKWKKRYFVLR-DSYLLYYKSSKDK------------------------------------SDSK 42 (104)
T ss_dssp EEEEEEEEEEE-SSSSSEEEEEEEEE-TTEEEEESSTTTT------------------------------------TESS
T ss_pred CEEEEEEEEEC-CCCCCeEEEEEEEE-CCEEEEEecCccc------------------------------------ccee
Confidence 46899999996 45589999999999 4667777665420 0123
Q ss_pred ccceeecccceeeeCCCC-----CCCcccEEEEeCCe-eEEEEeCCHHHHHHHHHHHHHHH
Q 006276 373 ARHTVNLLTSTIKVDADQ-----SDLRFCFRIISPTK-NYTLQAESALDQMDWIEKITGVI 427 (652)
Q Consensus 373 ~~~~i~l~~~~vk~~~~~-----~~rrfcF~I~t~~r-~~~lqA~se~e~~~Wi~ai~~ai 427 (652)
+...|+|..+.+....+. ....+||.|.++++ +|+|+|+|++|+..||.+|+.++
T Consensus 43 ~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 43 PKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp ESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eeEEEEecCceEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 345677777777765443 46789999999986 99999999999999999999886
No 57
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=99.50 E-value=9.9e-12 Score=122.83 Aligned_cols=189 Identities=17% Similarity=0.279 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hhhc---c-----cc-hHHHHHHHHHHhhCCCCCCCccc
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTE-------------GLGE---G-----YD-GDIAFASALETFGGGHNDPISVA 72 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~-------------~~~~---~-----~~-~~~~f~~~L~~f~~~~~d~~~~~ 72 (652)
-+..+|.+++..+.|++++.+....|.+ .+.+ - +- ....+...+...|..+.++..+
T Consensus 8 ~f~~le~~~d~t~~~~~~l~~~t~~~LqpNP~~r~~~~~~~~~~k~~g~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS~~- 86 (223)
T cd07615 8 DFQEMERKIDVTNKVVAELLSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLRYGRELGEESTF- 86 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCCCCchhHHHHHHHHHHhhCCCCChH-
Confidence 4578899999999999999999998877 2222 0 11 1256666666666654444333
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHh
Q 006276 73 FGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAA 152 (652)
Q Consensus 73 ~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~ 152 (652)
|.+|.+||.+.+.|+..+..+...+...++.||++|+..+|+.+...||+.+..+.+||.+..|. .+.
T Consensus 87 --G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~K~r~---~k~------- 154 (223)
T cd07615 87 --GNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYKKKRQ---GKI------- 154 (223)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCC-------
Confidence 67999999999999999999999999999999999999999999999999999999999977664 211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006276 153 ILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQ 218 (652)
Q Consensus 153 E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~e 218 (652)
.+.++..+...|..+.=+....|..+... +.+.+..|..|+.||..|++++.+++.++.+.+.+
T Consensus 155 -~~eE~~~A~~kfees~E~a~~~M~n~le~-e~e~~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~~ 218 (223)
T cd07615 155 -PDEEIRQAVEKFEESKELAERSMFNFLEN-DVEQVSQLSVLIEAALDYHRQSTEILEDLQSKLQN 218 (223)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14577888899999998999999988776 56899999999999999999999999998887763
No 58
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=99.49 E-value=8.3e-12 Score=123.87 Aligned_cols=192 Identities=16% Similarity=0.229 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc------------------hHHHHHHHHHHhhCCCCCCCccccCch
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYD------------------GDIAFASALETFGGGHNDPISVAFGGP 76 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~------------------~~~~f~~~L~~f~~~~~d~~~~~~~g~ 76 (652)
-+..+|.+++.++.|++++++....|.+- +-.+. ....+.+.+...|..+.++.. .|.
T Consensus 18 df~~l~~~~d~t~~~~~~i~~~t~~~LqP-Np~~r~e~~~~~k~~~~~~~~~~~~~~Lg~~M~~~g~~~g~~S~---~G~ 93 (229)
T cd07616 18 HLENLLSKAECTKHWTEKIMKQTEVLLQP-NPNARIEEFVYEKLDRKAPSRMNNPELLGQYMIDAGNEFGPGTA---YGN 93 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCCCc---HHH
Confidence 45678999999999999999998876542 11112 234444555444444433332 367
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHH
Q 006276 77 VMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEE 156 (652)
Q Consensus 77 ~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~ 156 (652)
+|.+||.+.+.|+..+..+...+...++.||++|+..+|+.+...||+.+..+.+||.+..++.+.+ .++.-...+.
T Consensus 94 aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~kAk---~~~~~~~~e~ 170 (229)
T cd07616 94 ALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRLKKAK---VAEARAAAEQ 170 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---cchhhcchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999975443 3333334577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006276 157 ELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (652)
Q Consensus 157 eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~ 214 (652)
+|..++..|.++.-+....|..|... +.+.+..|..|+.||..||+++++++.++..
T Consensus 171 elr~ae~efees~E~a~~~m~~i~~~-~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~~ 227 (229)
T cd07616 171 ELRITQSEFDRQAEITRLLLEGISST-HAHHLRCLNDFVEAQMTYYAQCYQYMLDLQK 227 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999988888777776643 5689999999999999999999999988754
No 59
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=99.49 E-value=1.1e-11 Score=122.56 Aligned_cols=188 Identities=18% Similarity=0.281 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------hc---------ccchHHHHHHHHHHhhCCCCCCCccc
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGL-------------GE---------GYDGDIAFASALETFGGGHNDPISVA 72 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~~~-------------~~---------~~~~~~~f~~~L~~f~~~~~d~~~~~ 72 (652)
-+..+|..++.++.|+.++++....|.+-= .+ .-.....+.+++...|..+.++..+
T Consensus 8 ~f~~le~~~d~t~~~~~~l~~~t~~~LqPNp~~R~~~~~~~~~~k~rg~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS~~- 86 (223)
T cd07614 8 DFKEMEKKVDLTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGLLGETMIRYGKELGDESNF- 86 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccccCCCCCChHhHHHHHHHHHHhhCCCCChH-
Confidence 467889999999999999999998776520 10 0012345556665555545444433
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHh
Q 006276 73 FGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAA 152 (652)
Q Consensus 73 ~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~ 152 (652)
|.+|.+||.+.+.|+..+..+...+...++.||++|++.+|+.+...||+.+..+.+||.+..|+ .|. +
T Consensus 87 --G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~---~k~--~---- 155 (223)
T cd07614 87 --GDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHHLKKLEGRRLDFDYKKKRQ---GKI--P---- 155 (223)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCC--c----
Confidence 67999999999999999999999999999999999999999999999999999999999987764 221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006276 153 ILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYIN 217 (652)
Q Consensus 153 E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~ 217 (652)
+.+|..+...|.++.=+....|..+... +.+.++.|..|+.||..||+++++++.++.+.+.
T Consensus 156 --eeelr~a~ekFees~E~a~~~M~~il~~-e~e~~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07614 156 --DEELRQAMEKFEESKEVAETSMHNLLET-DIEQVSQLSALVDAQLDYHRQAVQILDELAEKLK 217 (223)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778889999999999999998876 4589999999999999999999999988765554
No 60
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=99.48 E-value=1.4e-11 Score=122.65 Aligned_cols=188 Identities=21% Similarity=0.330 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hhhcc--------cc-hHHHHHHHHHHhhCCCCCCCccc
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTE-------------GLGEG--------YD-GDIAFASALETFGGGHNDPISVA 72 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~-------------~~~~~--------~~-~~~~f~~~L~~f~~~~~d~~~~~ 72 (652)
-+..+|.+++..+.|++++.+....|.+ .+.+. |- ....+.+.+...|..+.++..+
T Consensus 8 df~~le~~~d~~~~~~~~l~~~~~~~lqpNP~~r~~~~~~~~~~K~~g~~~~~~~p~~~~~Lg~~M~~~g~elg~~S~~- 86 (223)
T cd07592 8 EFLEMERKTDATSKLVEDLIPKTKEYLQPNPAARAKLAMQNTYSKIRGQAKSTKYPQPEGLLGEVMLKYGRELGEDSNF- 86 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccCcccCCCCcccHHHHHHHHHHhhcCCCChH-
Confidence 3567899999999999999999998872 11111 11 1256666666666555444433
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHh
Q 006276 73 FGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAA 152 (652)
Q Consensus 73 ~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~ 152 (652)
|.+|..||.+...|+..+..+...+...++.||.+|+..+|+.+...||+.+..+.+||.+..|+. |.
T Consensus 87 --G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdyD~~k~k~~---k~------- 154 (223)
T cd07592 87 --GQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDYDYKKRKQG---KG------- 154 (223)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cC-------
Confidence 679999999999999999999999999999999999999999999999999999999998887752 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006276 153 ILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYIN 217 (652)
Q Consensus 153 E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~ 217 (652)
.+.+|..+...|..+.=+....|..+... +.+.+..|..|+.||..||+++.+.+.++.+-+.
T Consensus 155 -~eeEl~~Ae~kfe~s~E~a~~~M~~il~~-e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~ 217 (223)
T cd07592 155 -PDEELKQAEEKFEESKELAENSMFNLLEN-DVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQ 217 (223)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24678889999999999999999988774 4689999999999999999999999988766654
No 61
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.48 E-value=1.8e-13 Score=118.74 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=61.2
Q ss_pred EEEeccCCC---CCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccccc
Q 006276 297 GYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (652)
Q Consensus 297 G~L~K~~~~---~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 373 (652)
|.|.|++.+ ....|++|||+|+ +..|+||+++....
T Consensus 5 ~~~~kr~~~~~~~~~n~KkRwF~Lt-~~~L~Y~k~~~~~~---------------------------------------- 43 (98)
T cd01244 5 LQQVDRSRLAWKKVLHFKKRYFQLT-TTHLSWAKDVQCKK---------------------------------------- 43 (98)
T ss_pred cEEEEcccCCCccCcCCceeEEEEC-CCEEEEECCCCCce----------------------------------------
Confidence 344555421 3478999999998 67788887654321
Q ss_pred cceeecc--cceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006276 374 RHTVNLL--TSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 374 ~~~i~l~--~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
.+.|+|. .+...+......+.|+|+|++|+++|+|||+|++|+++||.||+.+
T Consensus 44 ~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~s~~E~~~Wi~al~k~ 98 (98)
T cd01244 44 SALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFEAPVEATDWLNALEKQ 98 (98)
T ss_pred eeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECCCHHHHHHHHHHHhcC
Confidence 2233332 2222222223345699999999999999999999999999999753
No 62
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=99.46 E-value=2.6e-11 Score=122.69 Aligned_cols=203 Identities=17% Similarity=0.197 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hc-c-cchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHH
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGL-----GE-G-YDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALRE 87 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~~~-----~~-~-~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lke 87 (652)
-+..+|.+++.++.|+.+++|....+...- .+ . ......+...+...+..+.++.. .|.+|..+|.+.+.
T Consensus 16 ~~~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ekr~rk~p~~~Lg~~M~~~g~~l~~~s~---lg~~L~~~g~a~~~ 92 (244)
T cd07595 16 ELLQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDKRLKKLPEYGLAQSMLESSKELPDDSL---LGKVLKLCGEAQNT 92 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhhhhccCcHHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHH
Confidence 345689999999999999999433221110 00 0 11234555666555554443333 25799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC----hhhHhHHHHHHHHHHH
Q 006276 88 IGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTK----TDVAAILEEELHSARS 163 (652)
Q Consensus 88 l~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~----~~~~~E~~~eL~~~Rk 163 (652)
|+..+..+...+...++.||++|+..+|+.+...||+.++.+.+||.+..++.+..|... +.++.....++..+..
T Consensus 93 ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~ 172 (244)
T cd07595 93 LARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALKDEYEEAEL 172 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccccccccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987654321 2233345678888999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 006276 164 AFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLT 221 (652)
Q Consensus 164 ~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~el~~ 221 (652)
.|.+..-+++..|..+-.+ ..+++..|..|+.+|..|++++++++.++-|.+++...
T Consensus 173 k~e~~~e~~~~~M~~~l~~-E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~ 229 (244)
T cd07595 173 KLEQCRDALATDMYEFLAK-EAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQIE 229 (244)
T ss_pred HHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998776 56999999999999999999999999988777765543
No 63
>cd07608 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized fungal Arf GAP proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of uncharacterized fungal proteins containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and an Arf GTPase Activating Protein (GAP) domain. These proteins may play roles in Arf-mediated functions involving membrane dynamics. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.46 E-value=8.3e-12 Score=119.64 Aligned_cols=180 Identities=19% Similarity=0.228 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHH
Q 006276 14 KQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKE 93 (652)
Q Consensus 14 asv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~ 93 (652)
|++..+|++...|+..++++++...++.+++. ..+...|.+.|..++....-. + ..=..|....+++..+..
T Consensus 1 at~~~le~kt~~mr~~~Kkl~kr~~~~~ea~~--~~~~~~f~~ll~~~~~~~~~~----~--al~~yf~~~~~~~~~~~~ 72 (192)
T cd07608 1 ATLSNLERKTRLLRSYLKRLIKRIVKLIEAQD--QLVDLEFNELLSEAKFKNDFN----V--ALDSYFDPFLLNLAFFLR 72 (192)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcccccc----H--HHHHHhhHHHHHHHHHHH
Confidence 46889999999999999999999999888754 334577888887776532211 1 133678888889999989
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHH
Q 006276 94 VLRSQVEHMLNDRLLQYVN-IDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSL 172 (652)
Q Consensus 94 ~l~~~~~~~i~~pL~~f~~-~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDy 172 (652)
....+.+..+++|+..+.. +||+++...||.||..+.+|++.++||++...+++ +.+..+..-|+.|+...|||
T Consensus 73 ~~~~~lq~~~iep~~~~y~~~dik~~~~kkK~FEeeSKdYYs~l~kYLsn~~~~k-----~~DSK~l~KRk~FEL~RFDY 147 (192)
T cd07608 73 DVCQDLQLKKIEPLLKIYSINDIKELSDKKKDFEEESKDYYSWLSKYLSNESDKK-----RPDSKLLAKRKTFELSRFDY 147 (192)
T ss_pred HHHHHHHHHHHhhhhhccccchHHHHHHHhhhHHHHhHHHHHHHHHHhccccccc-----CcchHHHHHHHHHHHHHhhH
Confidence 8999999999999999999 99999999999999999999999999999874222 34567889999999999999
Q ss_pred HHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006276 173 VTALSNVE-AKKRFEFLEAVSGTMDAHLRYFKQGY 206 (652)
Q Consensus 173 v~~l~~l~-~~k~~e~le~l~~~~~aq~~ff~~g~ 206 (652)
...|+++. .++.-++|+.|..|...|+..+....
T Consensus 148 ~~~mqdl~ggr~~qell~~L~kf~~~q~~~~~~~~ 182 (192)
T cd07608 148 LNYLQDLHGGRKEQELLSILTKFINQQYDSIALTS 182 (192)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHhHh
Confidence 99999996 46667899999999999887775433
No 64
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=99.43 E-value=5e-11 Score=117.76 Aligned_cols=188 Identities=21% Similarity=0.319 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHH-----------------------HHHHHHHHhhCCCCCCCcc
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDI-----------------------AFASALETFGGGHNDPISV 71 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~-----------------------~f~~~L~~f~~~~~d~~~~ 71 (652)
-+..+|..++.++.|+.++++....|.+- +-...+.. .+...+...|..+.++..
T Consensus 8 ~f~~le~k~D~t~~~~~~i~~~t~~~LQP-Npa~r~k~~~~~~~~K~~g~~K~~~~p~~~~~Lg~~M~~~G~elg~dS~- 85 (223)
T cd07613 8 DFKEMERKVDVTSRAVMEIMTKTIEYLQP-NPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDECN- 85 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHhhccccCCCCCChHhHHHHHHHHHHhhCCCCCh-
Confidence 45788999999999999999988876443 11222223 333333333333333322
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhH
Q 006276 72 AFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVA 151 (652)
Q Consensus 72 ~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~ 151 (652)
.|.+|..||.+.+.|+..+..+..++...++.||++|...+|+.+...||+.+..+.+||.+..|+.+.
T Consensus 86 --~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~--------- 154 (223)
T cd07613 86 --FGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKI--------- 154 (223)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCCC---------
Confidence 367999999999999999999999999999999999999999999999999999999999876664221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006276 152 AILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQ 218 (652)
Q Consensus 152 ~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~e 218 (652)
.+.++..+...|..+.=+....|..+... +.+.+..|..|+.||..|++++++++.++.+.+++
T Consensus 155 --~eeElr~A~~kFees~E~a~~~M~n~l~~-e~e~~~~L~~fveAQl~Yh~qa~eiL~~l~~~l~~ 218 (223)
T cd07613 155 --PDEELRQALEKFDESKEIAESSMFNLLEM-DIEQVSQLSALVQAQLEYHKQATQILQQVTVKLED 218 (223)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25678889999999998888888888766 35899999999999999999999999998877753
No 65
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.43 E-value=1.4e-13 Score=145.35 Aligned_cols=123 Identities=24% Similarity=0.442 Sum_probs=106.1
Q ss_pred ccCc-ccHHHHHHccCCCCccccCCCCCC-CceeeccceeeeccchhhhcccCCCccceeEeecCCCCCCHHHHHHHHHh
Q 006276 496 CVKS-EKPIDVLRRVCGNDRCADCGAPEP-DWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSL 573 (652)
Q Consensus 496 ~~~~-~~~~~~l~~~~~N~~C~dC~~~~p-~w~s~~~gv~~C~~Cs~~Hr~lg~~is~vks~~ld~~~w~~~~i~~~~~~ 573 (652)
.++. |+.++.|+++|+|++|++|....+ +|+++.-|-|||..|+|.-|.|. --+||||+.|- .++..++..++.+
T Consensus 8 ~E~~~ek~iR~l~kLP~NrrC~nCnsl~~~t~~~~~~g~fv~~~~sg~ls~l~-~ahRvksiSmt--tft~qevs~lQsh 84 (524)
T KOG0702|consen 8 DEYDYEKEIRRLLKLPENRRCINCNSLVAATYVVYTVGSFVCTMCSGLLSGLN-PAHRVKSISMT--TFTDQEVSFLQSH 84 (524)
T ss_pred chhHHHHHHHHHhcCCCCCceeeccccccceEEEeeccceeeeccchhhccCC-Cccccceeeee--eccccchHHHhhc
Confidence 3445 889999999999999999999988 99999999999999999999984 46899999998 7999999999999
Q ss_pred chHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhccCCCCCCCCHHHHHHHHHHhhcCCCCccCCCC
Q 006276 574 GNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKVQYPLWPLRFNC 643 (652)
Q Consensus 574 GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~kY~~~~f~~~~~~ 643 (652)
||..+.+||....+.+. ..-|...++...|| ||+.||+.|+|..+.+.
T Consensus 85 gNq~~k~i~fkl~D~q~---------------------S~vPD~rn~~~~ke-f~q~~y~~kr~~v~~n~ 132 (524)
T KOG0702|consen 85 GNQVCKEIWFKLFDFQR---------------------SNVPDSRNPQKVKE-FQQEKYVKKRYYVPKNQ 132 (524)
T ss_pred chhhhhhhhhcchhhhh---------------------ccCCCcccchhhHH-HHhhhhccceeecCccc
Confidence 99999999998887653 13445555666675 99999999999876653
No 66
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=99.42 E-value=5.8e-11 Score=116.72 Aligned_cols=183 Identities=12% Similarity=0.186 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccch------------------HHHHHHHHHHhhCCCCCCCccccCch
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDG------------------DIAFASALETFGGGHNDPISVAFGGP 76 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~------------------~~~f~~~L~~f~~~~~d~~~~~~~g~ 76 (652)
-+..+|.+++.++.|+.++++....|.+- +-.+.+ ...+.+++...|..+..+.. .|.
T Consensus 18 df~~l~~~~D~tk~~~~~i~~~t~~~LqP-Np~~R~~~~~~~k~~~k~~~~~~~~~~Lg~~M~~~g~~~g~~s~---~G~ 93 (220)
T cd07617 18 HFENLLARADSTKNWTEKILRQTEVLLQP-NPSARVEEFLYEKLDRKVPSRVTNAELLGQYMTEAANDFGPGTP---YGK 93 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCCCc---hHH
Confidence 45778999999999999999998876442 111112 34444555444443333332 367
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHH
Q 006276 77 VMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEE 156 (652)
Q Consensus 77 ~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~ 156 (652)
+|..+|.+.+.|+..+..+...+...++.||++|+.++|+.+...||+.+..+.+||....+..+ ++.
T Consensus 94 aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~k------------ae~ 161 (220)
T cd07617 94 TLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKK------------AEH 161 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------cHH
Confidence 99999999999999999999999999999999999999999999999999999999999998533 135
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006276 157 ELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (652)
Q Consensus 157 eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~ 214 (652)
+|..+...|..+.-.+...|..+... +.+-|.+|..|+.||..||+++++.+.++.+
T Consensus 162 elr~A~~kf~~~~E~a~~~M~~il~~-~~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~ 218 (220)
T cd07617 162 ELRVAQTEFDRQAEVTRLLLEGISST-HVNHLRCLHEFVEAQATYYAQCYRHMLDLQK 218 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888888888765444446666544 4588999999999999999999999988765
No 67
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.40 E-value=2.8e-12 Score=111.78 Aligned_cols=97 Identities=24% Similarity=0.322 Sum_probs=70.4
Q ss_pred eeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccc
Q 006276 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (652)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (652)
.++||+|.|.++. +.|. |||+|.++-+||+.+..... ....
T Consensus 2 ~ikEG~L~K~~~k--~~~~-R~~FLFnD~LlY~~~~~~~~------------------------------------~~y~ 42 (99)
T cd01220 2 FIRQGCLLKLSKK--GLQQ-RMFFLFSDLLLYTSKSPTDQ------------------------------------NSFR 42 (99)
T ss_pred eeeEEEEEEEeCC--CCce-EEEEEccceEEEEEeecCCC------------------------------------ceEE
Confidence 4799999999653 4555 56666667777775543210 0112
Q ss_pred ccceeecccceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006276 373 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (652)
Q Consensus 373 ~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~ 428 (652)
..+.++|..+.|+-..+..+.+|||+|.++.++|+|+|.|++|+++||.+|+.+|.
T Consensus 43 ~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 43 ILGHLPLRGMLTEESEHEWGVPHCFTIFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEEEEEcCceEEeeccCCcCCceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 34556777777764333345689999999999999999999999999999999985
No 68
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.38 E-value=2.7e-12 Score=108.28 Aligned_cols=87 Identities=29% Similarity=0.507 Sum_probs=70.7
Q ss_pred EEEeccCCCCCCCceeEEEEEe-cCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccccccc
Q 006276 297 GYLSKRSSNLRGDWKRRFFVLD-SRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARH 375 (652)
Q Consensus 297 G~L~K~~~~~~~~WkrR~f~L~-~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 375 (652)
|||.|+.....+.|+||||+|+ ..|.|.||.++.+. ...+
T Consensus 1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~---------------------------------------~~rG 41 (89)
T PF15409_consen 1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSG---------------------------------------KLRG 41 (89)
T ss_pred CcceeeccccCCCceeEEEEEEcCCcEEEEEecCCCC---------------------------------------eeEe
Confidence 8999998778899999999994 58999999876431 2345
Q ss_pred eeecccceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006276 376 TVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 376 ~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
.|++..+.+.... +..+|+|.+...+|+|.|.|++|.+.|+.||+.|
T Consensus 42 si~v~~a~is~~~----~~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 42 SIDVSLAVISANK----KSRRIDIDSGDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred EEEccceEEEecC----CCCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 6677777776432 3458999999999999999999999999999875
No 69
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.5e-12 Score=128.13 Aligned_cols=95 Identities=28% Similarity=0.603 Sum_probs=70.2
Q ss_pred eeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccc
Q 006276 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (652)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (652)
+.++|||+|.+++..++||||||+|.+ ..|||+....++.
T Consensus 260 pdREGWLlKlgg~rvktWKrRWFiLtd-NCLYYFe~tTDKE--------------------------------------- 299 (395)
T KOG0930|consen 260 PDREGWLLKLGGNRVKTWKRRWFILTD-NCLYYFEYTTDKE--------------------------------------- 299 (395)
T ss_pred ccccceeeeecCCcccchhheeEEeec-ceeeeeeeccCCC---------------------------------------
Confidence 578999999988778999999999994 5577775543321
Q ss_pred ccceeecccceeeeCCCCCCCcccEEEEeCC----------------------eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006276 373 ARHTVNLLTSTIKVDADQSDLRFCFRIISPT----------------------KNYTLQAESALDQMDWIEKITGVIA 428 (652)
Q Consensus 373 ~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~----------------------r~~~lqA~se~e~~~Wi~ai~~ai~ 428 (652)
+++-|.|-.-.++ ..++..++|||+|-.|+ .+|-++|.|.+|+++||.+|+.+|+
T Consensus 300 PrGIIpLeNlsir-~VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 300 PRGIIPLENLSIR-EVEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred CCcceecccccee-eccCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 1122333333344 24566789999998743 1589999999999999999999886
No 70
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=99.37 E-value=3.8e-10 Score=113.43 Aligned_cols=202 Identities=18% Similarity=0.218 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHH
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGL--------GEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALR 86 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~~~--------~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lk 86 (652)
-+..+|.+++..+.|+.++.|....+.+.. .+-+ ....+.+.|.+.+..+.++..+ |.+|..+|.+.+
T Consensus 16 ~~~~le~r~D~~k~~~~~i~k~~~~~lqpnp~~r~ek~~kk~-p~~~Lgq~M~e~~~~lg~~s~~---g~aL~~~gea~~ 91 (246)
T cd07618 16 DLLQIERRLDTVRSVSHNVHKRLIACFQGQVGTDAEKRHKKL-PLTALAQNMQEGSAQLGEESLI---GKMLDTCGDAEN 91 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCccH---HHHHHHHHHHHH
Confidence 456789999999999999999887764321 0111 2456777777766655444333 679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC------hhhHhHHHHHHHH
Q 006276 87 EIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTK------TDVAAILEEELHS 160 (652)
Q Consensus 87 el~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~------~~~~~E~~~eL~~ 160 (652)
.|+..+...-..+...++.||.+|+.++|+.+...||+.++.+.+||.+..++.+..++-. ..++.....++.+
T Consensus 92 kla~~~~~~d~~ie~~fl~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K~~~l~ee~e~ 171 (246)
T cd07618 92 KLAFELSQHEVLLEKDILDPLNQLAEVEIPNIQKQRKQLAKLVLDWDSARGRYNQAHKSSGTNFQAMPSKIDMLKEEMDE 171 (246)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHHHHHHhccccCccccccccchhhhhHHHHHH
Confidence 9999988888899999999999999999999999999999999999999999966543110 1111112233444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 006276 161 ARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLT 221 (652)
Q Consensus 161 ~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~el~~ 221 (652)
++..|..+-=.|+..|-.+ .-+..+++..++.|+.+|..|++++++++.++-|.|+.+..
T Consensus 172 a~~k~E~~kD~~~~dm~~~-l~~e~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~~~ 231 (246)
T cd07618 172 AGNKVEQCKDQLAADMYNF-ASKEGEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQAHQD 231 (246)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443344333333 25578999999999999999999999999998888877653
No 71
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.37 E-value=4.1e-12 Score=113.63 Aligned_cols=110 Identities=29% Similarity=0.441 Sum_probs=55.0
Q ss_pred eeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccccc
Q 006276 295 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 374 (652)
Q Consensus 295 k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 374 (652)
|+|||+|++...++.|++|||+|..+|.|.||+.+.....+......+..+. ..|.+ .
T Consensus 1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~---------------~~~~~----~--- 58 (112)
T PF15413_consen 1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVI---------------RKGDW----S--- 58 (112)
T ss_dssp EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB----------------SEEE----E---
T ss_pred CCceEEEecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceE---------------eeccc----C---
Confidence 6899999976668999999999986788888987433211111000000000 00000 0
Q ss_pred ceeecccce-eee-CCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006276 375 HTVNLLTST-IKV-DADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 375 ~~i~l~~~~-vk~-~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
......... +.. .+........|.|.||.++|+|.|++.+|+.+||+||+.|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 59 ISRRSSRIQGIKDKNPFGEIHLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp ---GGGT-EEEES-T--SS-SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred cccccccccccccCCcccCcCCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 000000000 000 1112223467999999999999999999999999999865
No 72
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.33 E-value=5.5e-12 Score=113.48 Aligned_cols=95 Identities=19% Similarity=0.364 Sum_probs=67.8
Q ss_pred eeEEEec-cCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccccc
Q 006276 295 RQGYLSK-RSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (652)
Q Consensus 295 k~G~L~K-~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 373 (652)
-.|||.. +..+..++|+||||+|+ ++.|+|++.+.+. ....+
T Consensus 3 ~~GfL~~~q~~~~~k~W~RRWFvL~-g~~L~y~k~p~d~------------------------------------~~~~P 45 (122)
T cd01263 3 YHGFLTMFEDTSGFGAWHRRWCALE-GGEIKYWKYPDDE------------------------------------KRKGP 45 (122)
T ss_pred cceeEEEEeccCCCCCceEEEEEEe-CCEEEEEcCCCcc------------------------------------ccCCc
Confidence 4799975 44445699999999999 7888888776541 11234
Q ss_pred cceeecccceeeeCC----CCCCCcccEEEEeC--C-----------------ee-EEEEeCCHHHHHHHHHHHHHH
Q 006276 374 RHTVNLLTSTIKVDA----DQSDLRFCFRIISP--T-----------------KN-YTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 374 ~~~i~l~~~~vk~~~----~~~~rrfcF~I~t~--~-----------------r~-~~lqA~se~e~~~Wi~ai~~a 426 (652)
.+.|+|..|.+.... +...|++.|.|... . ++ ++|.|+|.+||++||.||+.+
T Consensus 46 lg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 46 TGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred eEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 566777777654321 24568899999642 1 23 679999999999999999863
No 73
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.32 E-value=1e-11 Score=109.69 Aligned_cols=84 Identities=19% Similarity=0.382 Sum_probs=59.1
Q ss_pred CCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccccccceeecccceee
Q 006276 306 LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIK 385 (652)
Q Consensus 306 ~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~l~~~~vk 385 (652)
..+.|++|||+|+ ++.|+||+++.... +.......|++..+.+.
T Consensus 19 ~~~~Wk~r~~vL~-~~~L~~ykd~~~~~-----------------------------------~~~~~~~~i~l~~~~i~ 62 (104)
T cd01253 19 SNRSWDNVYGVLC-GQSLSFYKDEKMAA-----------------------------------ENVHGEPPVDLTGAQCE 62 (104)
T ss_pred CCCCcceEEEEEe-CCEEEEEecCcccc-----------------------------------cCCCCCCcEeccCCEEE
Confidence 3578999999999 66777777653210 00000113455556665
Q ss_pred eCCCCCCCcccEEEEeCC-eeEEEEeCCHHHHHHHHHHHHH
Q 006276 386 VDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITG 425 (652)
Q Consensus 386 ~~~~~~~rrfcF~I~t~~-r~~~lqA~se~e~~~Wi~ai~~ 425 (652)
+..+...++|+|.|.+++ +.|+|||+|++|+.+||.+|+.
T Consensus 63 ~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 63 VASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred ecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 544445678999998776 8999999999999999999975
No 74
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.31 E-value=1.4e-09 Score=109.15 Aligned_cols=195 Identities=16% Similarity=0.242 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--------hHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHH
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYD--------GDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALR 86 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~--------~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lk 86 (652)
-+..+|..++..+.|+.++.|....|.+.-. ... -+..+.+++...+..+.++..+ |.+|..+|.+.+
T Consensus 16 ~~~~le~r~D~~k~~~~~i~kk~~~~LQpnp-~~r~ekr~~k~P~~~L~q~M~~~g~elg~~s~l---g~aL~~~gea~~ 91 (248)
T cd07619 16 DLLQVEKRLELVKQVSHSTHKKLTACLQGQQ-GVDADKRSKKLPLTTLAQCMVEGAAVLGDDSLL---GKMLKLCGETED 91 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-HHHHHHhccCCCHHHHHHHHHHHHHhcCCCchH---HHHHHHHHHHHH
Confidence 4677899999999999999999887765421 111 1245777777776655444333 569999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-----------ChhhHh---
Q 006276 87 EIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT-----------KTDVAA--- 152 (652)
Q Consensus 87 el~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k-----------~~~~~~--- 152 (652)
.|+..+..+..++...++.||++|+++||+.+...||+.++.+.+||.+..++.+.+++. +.+.++
T Consensus 92 kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr~e~ 171 (248)
T cd07619 92 KLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALREEM 171 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHhccccccccccccCCCCccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997665421 222232
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 006276 153 -ILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLT 221 (652)
Q Consensus 153 -E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~el~~ 221 (652)
+++..+..+|-.+...++.++ .+..+++++|..|+.+|..|++++++++.++.|.|+.+..
T Consensus 172 E~ae~~~e~~kd~~~~~m~~~l--------~~e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~ 233 (248)
T cd07619 172 EEAANRMEICRDQLSADMYSFV--------AKEIDYANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQE 233 (248)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333344444444443333 2346889999999999999999999999999888887664
No 75
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.28 E-value=4e-11 Score=107.44 Aligned_cols=102 Identities=19% Similarity=0.368 Sum_probs=73.1
Q ss_pred eeEEEeccC---------CCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCC
Q 006276 295 RQGYLSKRS---------SNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG 365 (652)
Q Consensus 295 k~G~L~K~~---------~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 365 (652)
|+|+|..+- +..++.|+++||+|+ ++.|+.|+++.....+
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~-g~~L~~yKDe~~~~~~------------------------------ 50 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILR-GLVLYLQKDEHKPGKS------------------------------ 50 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEE-CCEEEEEccCcccccc------------------------------
Confidence 578886332 112478999999999 5777888777531100
Q ss_pred CCCccccccceeecccceeeeCCCCCCCcccEEEEeCC-eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006276 366 VHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIAS 429 (652)
Q Consensus 366 ~~~~~~~~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~-r~~~lqA~se~e~~~Wi~ai~~ai~~ 429 (652)
+.. ......|.|..+.+.+..+...|++.|.|.+++ +.|.|||.+++||+.||.+|+.+.+.
T Consensus 51 ~~~--~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 51 LSE--TELKNAISIHHALATRASDYSKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred ccc--ccccceEEeccceeEeeccccCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 000 011234566666666667778899999999997 88999999999999999999998763
No 76
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.23 E-value=4.8e-11 Score=108.29 Aligned_cols=36 Identities=19% Similarity=0.458 Sum_probs=33.2
Q ss_pred CCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006276 391 SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 391 ~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
..+++.|.|.+++|+|.|.|+|+.++++||++|+.|
T Consensus 86 ~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 86 TGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred CCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 456899999999999999999999999999999864
No 77
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.23 E-value=9.3e-10 Score=110.88 Aligned_cols=198 Identities=18% Similarity=0.171 Sum_probs=146.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhcccchHHHHHHHH--------HHhhCCC-CCCCccccCchh
Q 006276 9 SPMFRKQIQGLEESAEVLRERSLKFYKGCRK--YTEGLGEGYDGDIAFASAL--------ETFGGGH-NDPISVAFGGPV 77 (652)
Q Consensus 9 SP~FRasv~~~E~~le~l~~~l~kl~K~~kk--~~~~~~~~~~~~~~f~~~L--------~~f~~~~-~d~~~~~~~g~~ 77 (652)
.|-++.+++.+-..+..--.||.+....... ..-+.......=..|..+| ..|+... .|+ ++.|.+
T Consensus 32 P~n~~es~~~~~~~~~~k~~~l~~~t~~~e~~~~l~~~~~~~~~pkTl~~aLs~~m~~~~~~l~~~~~~~~---s~lg~a 108 (242)
T cd07600 32 PPNLTESISDFSKTIGSKVSELSKATSPTEAQKVLLGTPAPAKLPKTLNHALSRAALASSLELKSLEPEDE---DPLSKA 108 (242)
T ss_pred CCCchHHHHHHHHhhHHHHHHHhhcCChhhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHHhCccCCCCC---CHHHHH
Confidence 6788999999988877666666665554431 1000000000013455555 3344421 122 224679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHH
Q 006276 78 MTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEE 157 (652)
Q Consensus 78 L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~e 157 (652)
|.++|.+..+|+..+..+...+...++.||+.|+.++|+.+...||+.+..+.+||.+..++.+.++. +...+...+
T Consensus 109 L~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~~ka~~~---~k~~~~~~e 185 (242)
T cd07600 109 LGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAELKSAEPA---EKQEAARVE 185 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998665432 111233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006276 158 LHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (652)
Q Consensus 158 L~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~ 214 (652)
+..+...|..+.-+.+..|..+... .+.++.|..|+.||..||+++.+.+.++.+
T Consensus 186 ~E~aEdef~~a~E~a~~~M~~il~~--~e~i~~L~~fv~AQl~Yh~~~~e~L~~l~~ 240 (242)
T cd07600 186 VETAEDEFVSATEEAVELMKEVLDN--PEPLQLLKELVKAQLAYHKTAAELLEELLS 240 (242)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6678888888887888888888444 689999999999999999999999988765
No 78
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.22 E-value=4.5e-11 Score=103.60 Aligned_cols=82 Identities=16% Similarity=0.350 Sum_probs=64.4
Q ss_pred CCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccccccceeecccceeee
Q 006276 307 RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKV 386 (652)
Q Consensus 307 ~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~l~~~~vk~ 386 (652)
.++||||||+++ ++.|+||+++... ...+.+.+++..|.|.+
T Consensus 17 ~K~~KrrwF~lk-~~~L~YyK~kee~-------------------------------------~~~p~i~lnl~gcev~~ 58 (106)
T cd01237 17 LKGYKQYWFTFR-DTSISYYKSKEDS-------------------------------------NGAPIGQLNLKGCEVTP 58 (106)
T ss_pred hhhheeEEEEEe-CCEEEEEccchhc-------------------------------------CCCCeEEEecCceEEcc
Confidence 478999999999 7888888776431 11234567888888875
Q ss_pred CCCCCCCcccEEEEeCC----eeEEEEeCCHHHHHHHHHHHHHH
Q 006276 387 DADQSDLRFCFRIISPT----KNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 387 ~~~~~~rrfcF~I~t~~----r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
+..-..++|+|.+.+|. ++|+|.|+||+++..||+|.+.|
T Consensus 59 dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rla 102 (106)
T cd01237 59 DVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLA 102 (106)
T ss_pred cccccccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHh
Confidence 43223557999999987 99999999999999999999876
No 79
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.19 E-value=2.9e-10 Score=97.43 Aligned_cols=97 Identities=30% Similarity=0.638 Sum_probs=70.7
Q ss_pred eeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccccc
Q 006276 294 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (652)
Q Consensus 294 ~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 373 (652)
.++|||.++.......|++|||+|.+ +.|.||+...... ....
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~-~~l~~~~~~~~~~------------------------------------~~~~ 44 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFN-STLLYYKSEKAKK------------------------------------DYKP 44 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEEC-CEEEEEeCCCccc------------------------------------cCCC
Confidence 57999999975345789999999995 5666665543210 0122
Q ss_pred cceeecccceeeeCCCCC--CCcccEEEEeCCe-eEEEEeCCHHHHHHHHHHHHHHH
Q 006276 374 RHTVNLLTSTIKVDADQS--DLRFCFRIISPTK-NYTLQAESALDQMDWIEKITGVI 427 (652)
Q Consensus 374 ~~~i~l~~~~vk~~~~~~--~rrfcF~I~t~~r-~~~lqA~se~e~~~Wi~ai~~ai 427 (652)
...+.+..+.+....+.. ...++|.|.++++ +++|+|+|++|+..|+.+|+.++
T Consensus 45 ~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 45 KGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ceEEECCcCEEEeCCCCccCCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 345666666665443321 4679999999988 99999999999999999998875
No 80
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=99.13 E-value=2.5e-09 Score=115.66 Aligned_cols=109 Identities=20% Similarity=0.391 Sum_probs=78.7
Q ss_pred CceeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcc
Q 006276 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (652)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 370 (652)
...+|+|.|+|.+.+ ..+-..||++|.++-++|..... +..| ..
T Consensus 270 reLiKEG~l~Kis~k-~~~~qeRylfLFNd~~lyc~~r~--~~~~---------------------------------~k 313 (623)
T KOG4424|consen 270 RELIKEGQLQKISAK-NGTTQERYLFLFNDILLYCKPRK--RLPG---------------------------------SK 313 (623)
T ss_pred HHHhhccceeeeecc-CCCcceeEEEEehhHHHhhhhhh--hccc---------------------------------ce
Confidence 357899999999765 47889999999976666653322 1110 11
Q ss_pred ccccceeecccceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHHHhhccCCC
Q 006276 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAP 436 (652)
Q Consensus 371 ~~~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~~~l~~~~~ 436 (652)
...+..+++..+.+. ..+...+.+.|.|..+.+.+.|||-|+++.++||.+|+.+|..+.+..-+
T Consensus 314 ~~~r~~~s~~~~~v~-~~~~~~~~~tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~kq~~eT 378 (623)
T KOG4424|consen 314 YEVRARCSISHMQVQ-EDDNEELPHTFILTGKKRGVELQARTEQEKKEWVQAIQDAIDKHKQCRET 378 (623)
T ss_pred eccceeeccCcchhc-ccccccCCceEEEecccceEEeecCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 112233444455554 34556778999999999999999999999999999999999887765433
No 81
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.11 E-value=3.3e-08 Score=98.66 Aligned_cols=199 Identities=14% Similarity=0.231 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHH
Q 006276 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVL 95 (652)
Q Consensus 16 v~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l 95 (652)
....|.....+++-..+|.|.+++|.+++..+..++..+++.|..+.....++. +..+...+.....++......+
T Consensus 13 fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~~~~~~~~~~----~~~~~e~y~~~~~~l~~~~~~~ 88 (225)
T cd07590 13 LEREVQKLQQLESTTKKLYKDMKKYIEAVLALSKAEQRLSQDLASGPLCEDNDE----LRNLVEALDSVTTQLDKTVQEL 88 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCChH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788889999999999999988888888888888877543222111 1125566667777777766778
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCC--Ch--hhHhHHHHHHHHHHHHHHHHHHH
Q 006276 96 RSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT--KT--DVAAILEEELHSARSAFEQARFS 171 (652)
Q Consensus 96 ~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k--~~--~~~~E~~~eL~~~Rk~f~~aslD 171 (652)
...++.+++.||..|+.. +..+++.-++-+....+||.+.+++-.+..++ .+ .++..++.+|..++..|....-.
T Consensus 89 ~~~~~~~vl~Pl~~~~s~-f~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~N~~ 167 (225)
T cd07590 89 VNLIQKTFIEPLKRLRSV-FPSVNAAIKRREQSLQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKALAAARADFEKQNIK 167 (225)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999988 88899898999999999999999997765332 33 56778889999999999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006276 172 LVTALSNVEAKKRFEFLEAV-SGTMDAHLRYFKQGYELLHQMEPYINQVL 220 (652)
Q Consensus 172 yv~~l~~l~~~k~~e~le~l-~~~~~aq~~ff~~g~e~~~~l~~~l~el~ 220 (652)
+...|..+-..+ +.|+.++ -+|+.+|..||..++..+.++.++++.-.
T Consensus 168 L~~ELP~l~~~r-~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d~~~ 216 (225)
T cd07590 168 LLEELPKFYNGR-TDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLDNPI 216 (225)
T ss_pred HHHHhHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999986654 4666654 58999999999999999999988876543
No 82
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=99.10 E-value=6.9e-09 Score=101.34 Aligned_cols=190 Identities=14% Similarity=0.204 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHH-----------HhhCCCCC---C-CccccCchhHHHHHHHH
Q 006276 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALE-----------TFGGGHND---P-ISVAFGGPVMTKFTIAL 85 (652)
Q Consensus 21 ~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~-----------~f~~~~~d---~-~~~~~~g~~L~~f~~~l 85 (652)
+..+..++|.+++++...-+.+- +-.-..++-|-+.|. .++..+.| + -..++.|..|.+.++.-
T Consensus 44 ~rAd~Tk~wTekil~qtEvlLQP-NP~aR~EEf~YEKLdrK~psR~nN~ElL~qyM~dAg~efGptTpYG~aLiKvaete 122 (375)
T KOG3725|consen 44 QRADKTKDWTEKILSQTEVLLQP-NPTARMEEFFYEKLDRKKPSRQNNLELLSQYMTDAGEEFGPTTPYGSALIKVAETE 122 (375)
T ss_pred HHhhhhhHHHHHHHHhhheecCC-CcchhHHHHHHHHHhccCccccCCHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 45677788999999888755331 111112233333331 12211111 1 11234578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCC----------ChhhHhHHH
Q 006276 86 REIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT----------KTDVAAILE 155 (652)
Q Consensus 86 kel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k----------~~~~~~E~~ 155 (652)
+.|+.....+.......++.||.+|+..|++.+...||.....+.+.|+.-.+....+... ....+..++
T Consensus 123 krlG~AeReli~taa~nfLtPlRnFlEGD~KTI~KERklLqnkRLDLDAcKsRLKKAKaae~q~~rN~~~s~~~~ie~aE 202 (375)
T KOG3725|consen 123 KRLGQAERELIGTAATNFLTPLRNFLEGDMKTIQKERKLLQNKRLDLDACKSRLKKAKAAELQTVRNSKTSGGFTIEQAE 202 (375)
T ss_pred HHhhHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHhhcccChHHHHHHHHHhhhhhhhccccccccCcchHhHHH
Confidence 9999998889888889999999999999999999999999999999999888853322100 011244678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006276 156 EELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (652)
Q Consensus 156 ~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l 212 (652)
++|..+..+|...+ +....|-+-...-+...|++|.+|+.+|.+||.|+|.+|-++
T Consensus 203 qelRvaQ~EFDrQa-EiTrLLLEGIsstH~nhLrCL~dFVeaQmtyYAQcyq~MlDL 258 (375)
T KOG3725|consen 203 QELRVAQAEFDRQA-EITRLLLEGISSTHNNHLRCLRDFVEAQMTYYAQCYQLMLDL 258 (375)
T ss_pred HHHHHHHHHHhHHH-HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999887 777777777777777889999999999999999999998664
No 83
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.09 E-value=4.6e-08 Score=97.58 Aligned_cols=191 Identities=12% Similarity=0.112 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc------cc-chHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHH-HH
Q 006276 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGE------GY-DGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIAL-RE 87 (652)
Q Consensus 16 v~~~E~~le~l~~~l~kl~K~~kk~~~~~~~------~~-~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~l-ke 87 (652)
+..+|.+++..+..+..+.|-...|.+.... +. .....+++++.+.+..+.++..+ |.+| .++..+ +.
T Consensus 17 l~~iEkrvD~~k~~~~~i~kkl~~~LQpn~~~~aekr~kKlpe~~Ls~~M~es~keLg~dS~l---g~aL-e~~~~~e~~ 92 (257)
T cd07620 17 LVLVEQRVEPAKKAAQLIHKKLQGCLQSQPGLEAEKRMKKLPLMALSISMAESFKDFDAESSI---RRVL-EMCCFMQNM 92 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccHhHHHHHHHHHHhhCCCcchH---HHHH-HHHHHHHHH
Confidence 3445566665555555555555444332100 00 02345566666666555444333 5578 555555 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------------------CC
Q 006276 88 IGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRK---------------------GT 146 (652)
Q Consensus 88 l~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K---------------------~k 146 (652)
|......+-.++...++.||.++.++||+.+...||++.+...+||.+..||.+..| .|
T Consensus 93 LA~~l~~~E~~Ve~~vl~PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K 172 (257)
T cd07620 93 LANILADFEMKVEKDVLQPLNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEVGEHQGIRRANK 172 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccccCCcccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999954333 11
Q ss_pred ---ChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006276 147 ---KTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQ 218 (652)
Q Consensus 147 ---~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~e 218 (652)
-.+.++++...+...|-.|...++.|+ . ++.+++..++.|+.+|..|.+++.+.++.+.|-|++
T Consensus 173 ~~~lkeE~eea~~K~E~~kd~~~a~Mynfl-------~-kE~e~a~~l~~lveaQ~~YHrqsl~~Le~~l~~~~~ 239 (257)
T cd07620 173 GEPLKEEEEECWRKLEQCKDQYSADLYHFA-------T-KEDSYANYFIRLLELQAEYHKNSLEFLDKNITELKE 239 (257)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122344555556666665555554444 2 356999999999999999999999999877665544
No 84
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.06 E-value=7.5e-10 Score=100.24 Aligned_cols=106 Identities=23% Similarity=0.470 Sum_probs=63.6
Q ss_pred eeEEEeccC---------CCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCC
Q 006276 295 RQGYLSKRS---------SNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG 365 (652)
Q Consensus 295 k~G~L~K~~---------~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 365 (652)
|+|||..+. +...+.|+..|++|+ ++.|++|++......+.... ...
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~-g~~L~~~k~~~~~~~~~~~~-----------------------~~~ 57 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQ-GGQLYFYKDEKSPASSTPPD-----------------------IQS 57 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEE-TTEEEEESSHHHHCCT-BS--------------------------S
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEE-CCEEEEEccCcccccCCccc-----------------------ccc
Confidence 689997432 113578999999998 78888887743210000000 000
Q ss_pred CCCccccccceeecccceeeeCCCCCCCcccEEEEeCC-eeEEEEeCCHHHHHHHHHHHHHH
Q 006276 366 VHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 366 ~~~~~~~~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~-r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
.+...+...|+|..|...+..+...|+|+|.|.+++ ..|.|||.|++||.+||.+|+-+
T Consensus 58 --~~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 58 --VENAKPDSSISLHHALAEIASDYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp --S--E-----EE-TT-EEEEETTBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH
T ss_pred --cccCcceeEEEecceEEEeCcccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhh
Confidence 011223355788877777767777889999999986 67999999999999999999876
No 85
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.03 E-value=1.4e-09 Score=92.21 Aligned_cols=95 Identities=37% Similarity=0.715 Sum_probs=67.4
Q ss_pred eeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccccc
Q 006276 295 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 374 (652)
Q Consensus 295 k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 374 (652)
++|||.++.......|++|||+|.++.+++ |....... ...+.
T Consensus 1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~l~~-~~~~~~~~------------------------------------~~~~~ 43 (96)
T cd00821 1 KEGYLLKKTGKLRKGWKRRWFVLFNDLLLY-YKKKSSKK------------------------------------SYKPK 43 (96)
T ss_pred CcchhhhhhChhhCCccEEEEEEECCEEEE-EECCCCCc------------------------------------CCCCc
Confidence 479999886433368999999999555554 44332100 01223
Q ss_pred ceeecccceeeeCCCCCCCcccEEEEeCC-eeEEEEeCCHHHHHHHHHHHHHH
Q 006276 375 HTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 375 ~~i~l~~~~vk~~~~~~~rrfcF~I~t~~-r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
..+.+..+.+....+..+.+++|.|++.. +.++|+|+|++|+..|+.+|+.+
T Consensus 44 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 44 GSIPLSGAEVEESPDDSGRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred ceEEcCCCEEEECCCcCCCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhcC
Confidence 45666667776554444468999999988 89999999999999999999753
No 86
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.02 E-value=3.4e-09 Score=92.92 Aligned_cols=100 Identities=23% Similarity=0.317 Sum_probs=72.4
Q ss_pred eeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccc
Q 006276 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (652)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (652)
.+++|-|.|.. ++.-+.|||+|.+|-++|-...... ....
T Consensus 4 li~eG~L~K~~---rk~~~~R~ffLFnD~LvY~~~~~~~-------------------------------------~~~~ 43 (104)
T cd01218 4 LVGEGVLTKMC---RKKPKQRQFFLFNDILVYGNIVISK-------------------------------------KKYN 43 (104)
T ss_pred EEecCcEEEee---cCCCceEEEEEecCEEEEEEeecCC-------------------------------------ceee
Confidence 57899999985 4667889999997755553211000 0011
Q ss_pred ccceeecccceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHHHhhc
Q 006276 373 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS 432 (652)
Q Consensus 373 ~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~~~l~ 432 (652)
....++|-.+.|....++.+-+++|.|.++.++|+++|+|++|+.+||.+|+.||..++.
T Consensus 44 ~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~kSf~v~A~s~~eK~eWl~~i~~ai~~~l~ 103 (104)
T cd01218 44 KQHILPLEGVQVESIEDDGIERNGWIIKTPTKSFAVYAATETEKREWMLHINKCVTDLLE 103 (104)
T ss_pred EeeEEEccceEEEecCCcccccceEEEecCCeEEEEEcCCHHHHHHHHHHHHHHHHHHhc
Confidence 123455656666543444556899999999999999999999999999999999998764
No 87
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=98.96 E-value=2.4e-07 Score=93.24 Aligned_cols=184 Identities=21% Similarity=0.294 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchH-----------------------HHHHHHHHHhhCCCCCCCcc
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGD-----------------------IAFASALETFGGGHNDPISV 71 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~-----------------------~~f~~~L~~f~~~~~d~~~~ 71 (652)
....+|.+|+....-+.++...+..|++- +-++.+. ..+.+.+..+|....++.++
T Consensus 27 dF~eme~~vdvt~~~v~~i~~~tteylqp-npa~rakl~~~n~lsKvrG~~k~~~ypq~e~~Lg~~mik~gkeLg~dSs~ 105 (366)
T KOG1118|consen 27 DFLEMEKEVDVTSKGVTKILAKTTEYLQP-NPASRAKLAMLNTLSKVRGQVKEKGYPQTEGLLGDVMIKHGKELGDDSSF 105 (366)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhHHhcCC-ChhhhhHHHHHHHHHHhcccccCCCCccchhHHHHHHHHHHHhcCCCccc
Confidence 35788999999999999999998888761 1111111 23455555566555454443
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhH
Q 006276 72 AFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVA 151 (652)
Q Consensus 72 ~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~ 151 (652)
|.+|...|+++.+|+...+.|..++...+++||+++-..+++.+...||+.+-.+.+||....| +.|-+
T Consensus 106 ---g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kkkk---~~K~~----- 174 (366)
T KOG1118|consen 106 ---GHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKKKK---QGKIK----- 174 (366)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHH---hccCC-----
Confidence 5689999999999999999999999999999999998888999999999999999999987666 33332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006276 152 AILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (652)
Q Consensus 152 ~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~ 214 (652)
+++|..++..|.+.--..-..|-.+.. .+.+-+.+|..++++|..|+++..++++.+..
T Consensus 175 ---dEelrqA~eKfEESkE~aE~sM~nlle-~d~eqvsqL~~Li~aqLdfhrqs~~iL~~l~~ 233 (366)
T KOG1118|consen 175 ---DEELRQALEKFEESKELAEDSMFNLLE-NDVEQVSQLSALIQAQLDFHRQSTQILQELQM 233 (366)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444444444333222222333322 25688999999999999999999999877643
No 88
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=98.94 E-value=4.4e-07 Score=91.14 Aligned_cols=197 Identities=22% Similarity=0.313 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHH-HHHH
Q 006276 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGT-YKEV 94 (652)
Q Consensus 16 v~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~-~~~~ 94 (652)
.+..|.....++.-+++|.|.+++|.+++..+..++..|++.|..|-....+.... .....+....++|.. ....
T Consensus 13 F~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~lY~p~~~~~~~----~~~~~y~~~v~~l~~~~~~e 88 (224)
T cd07591 13 FEFEERRYRTMEKASTKLQKEAKGYLDSLRALTSSQARIAETISSFYGDAGDKDGA----MLSQEYKQAVEELDAETVKE 88 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHh----HHHHHHHHHHHHHHHHHHHH
Confidence 45677788888999999999999999999998888999999998875433322110 134566666666653 2233
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCChhhHhHHHHHHHHHHHHHHHHHHHH
Q 006276 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLR--KGTKTDVAAILEEELHSARSAFEQARFSL 172 (652)
Q Consensus 95 l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~--K~k~~~~~~E~~~eL~~~Rk~f~~aslDy 172 (652)
+...+...++.|+..|+.. +.+++..=++-+....+||.+..++.++. +++++.++..++.+|..++..|...--.+
T Consensus 89 l~~~~~~~V~~Pl~~~~~~-~~~i~k~IkKR~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~L 167 (224)
T cd07591 89 LDGPYRQTVLDPIGRFNSY-FPEINEAIKKRNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQL 167 (224)
T ss_pred HHhHHHHHHHHHHHHHHHH-hhhHHHHHHHHHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444778999999999877 88888888888888999999999987664 33455678889999999999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006276 173 VTALSNVEAKKRFEFLEAV-SGTMDAHLRYFKQGYELLHQMEPYINQ 218 (652)
Q Consensus 173 v~~l~~l~~~k~~e~le~l-~~~~~aq~~ff~~g~e~~~~l~~~l~e 218 (652)
...|..+-... +.|+.++ -+++..|.+||..++..+.++..++..
T Consensus 168 k~ELP~l~~~r-~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~~ 213 (224)
T cd07591 168 KTELPQLVDLR-IPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLDA 213 (224)
T ss_pred HHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 99999987664 3666655 488999999999999999888777654
No 89
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.93 E-value=2.1e-09 Score=109.41 Aligned_cols=105 Identities=23% Similarity=0.377 Sum_probs=70.6
Q ss_pred CceeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcc
Q 006276 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (652)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 370 (652)
..++|+|||+||+..+ ++|..|||+|.++|.|.-|+.+.+... ..
T Consensus 13 ~~vvkEgWlhKrGE~I-knWRpRYF~l~~DG~~~Gyr~kP~~~~----------------------------------~~ 57 (516)
T KOG0690|consen 13 EDVVKEGWLHKRGEHI-KNWRPRYFLLFNDGTLLGYRSKPKEVQ----------------------------------PT 57 (516)
T ss_pred hhhHHhhhHhhcchhh-hcccceEEEEeeCCceEeeccCCccCC----------------------------------CC
Confidence 4678999999997665 899999999999987766654432100 00
Q ss_pred ccccceeecccceeeeCCCCCCCcccEEEEeCCee----EEEEeCCHHHHHHHHHHHHHHHHHhhc
Q 006276 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKN----YTLQAESALDQMDWIEKITGVIASLLS 432 (652)
Q Consensus 371 ~~~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~----~~lqA~se~e~~~Wi~ai~~ai~~~l~ 432 (652)
+.+.....+..|..- ..+..|++.|-|....-+ .+|.++|+++|++||.||+.+-....+
T Consensus 58 p~pLNnF~v~~cq~m--~~erPrPntFiiRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l~q 121 (516)
T KOG0690|consen 58 PEPLNNFMVRDCQTM--KTERPRPNTFIIRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRLKQ 121 (516)
T ss_pred cccccchhhhhhhhh--hccCCCCceEEEEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhhhh
Confidence 011111122233322 233467899999887633 589999999999999999988654433
No 90
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=98.86 E-value=1.1e-06 Score=85.68 Aligned_cols=189 Identities=20% Similarity=0.168 Sum_probs=156.0
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHH
Q 006276 18 GLEESAEVLRE---RSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (652)
Q Consensus 18 ~~E~~le~l~~---~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~ 94 (652)
.+|.+|+.|+. ....+++.+++|...+-.+...+..|.+.|..++.- ++.. .|..+..|+++++-+......
T Consensus 3 eL~akle~l~~~~~~y~~Ll~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~--~~~~---a~~~f~~~~~a~r~~~k~g~~ 77 (203)
T cd00011 3 ELELQLELLRETKRKYESVLQLGRALTAHLYSLSQTQHALGDAFADLSQK--DPEL---AGEEFGYNAEAQKLLCKNGET 77 (203)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcH---HHHHHHHHHHHHHHHHHhHHH
Confidence 35566666555 688888888999888877777788888888887652 2221 134789999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCh------hhHhHHHHHHHHHHHHHHHH
Q 006276 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKT------DVAAILEEELHSARSAFEQA 168 (652)
Q Consensus 95 l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~------~~~~E~~~eL~~~Rk~f~~a 168 (652)
++..+.. ++.-|..|+...|..-...-++|+.++.+||+++.+...++..-.+ .+.+.+..+...+|..|.+-
T Consensus 78 ll~~l~~-~~~~l~T~~~kai~DT~lTI~~ye~aR~EY~a~~l~~ke~~~e~~~~~~~~~~k~r~~q~~~~~~k~kf~kL 156 (203)
T cd00011 78 LLGAVNF-FVSSINTLVTKAIEDTLLTVKQYEAARLEYDAYRLDLKELSLEPRDDTAGTRGRLRSAQATFQEHRDKFEKL 156 (203)
T ss_pred HHHHHHH-HHHHHHHHHhhhcchHHHHHHHHHHHHHhHHHHHHHHHHhcccCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 8876654 4778999999999999999999999999999999999888655443 33466778899999999999
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006276 169 RFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (652)
Q Consensus 169 slDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l 212 (652)
..|.+.+|..|..++--.+..+|+.|..+...||......++++
T Consensus 157 r~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~~~~~~l~~~ 200 (203)
T cd00011 157 RGDVAIKLKFLEENKIKVMHKQLLLFHNTVSAYFAGNQKVLEQT 200 (203)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999998887888999999999999999988888764
No 91
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.86 E-value=2.1e-08 Score=85.48 Aligned_cols=92 Identities=32% Similarity=0.581 Sum_probs=61.4
Q ss_pred eEEEeccCCCC---CCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccc
Q 006276 296 QGYLSKRSSNL---RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (652)
Q Consensus 296 ~G~L~K~~~~~---~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (652)
+|||.+++... ...|++|||+|.++.++ ||+.+.... ..
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~-~~~~~~~~~-----------------------------------~~-- 43 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLL-LYKSDDKKE-----------------------------------IK-- 43 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEE-EEEcCCCCc-----------------------------------CC--
Confidence 69998886554 47899999999965544 454443210 00
Q ss_pred ccceeecccceeeeCCCCCCCcccEEEEeC---CeeEEEEeCCHHHHHHHHHHHHHH
Q 006276 373 ARHTVNLLTSTIKVDADQSDLRFCFRIISP---TKNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 373 ~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~---~r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
...+.+....+....+..+.++||.|+.. .+.++|+|+|++|++.|+.+|+.+
T Consensus 44 -~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 44 -PGSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred -CCEEEccceEEEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 01122322223332222246899999998 688999999999999999999763
No 92
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=98.85 E-value=2e-06 Score=85.23 Aligned_cols=193 Identities=13% Similarity=0.153 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHH
Q 006276 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVL 95 (652)
Q Consensus 16 v~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l 95 (652)
....|.....++.-.++|.|.++.|.+++..+..++..|+.+|..+-...-... ..+........++|. .+
T Consensus 14 Fe~~e~~f~~~e~~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~lY~p~~~~~------~~~~~v~e~~d~~~~---~l 84 (211)
T cd07588 14 FDEHVNNFNKQQASANRLQKDLKNYLNSVRAMKQASKTLSETLKELYEPDWPGR------EHLASIFEQLDLLWN---DL 84 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccH------HHHHHHHHHHHHHHH---HH
Confidence 356677778888899999999999999999888889999999987754221111 122333334444444 35
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCChhhHhHHHHHHHHHHHHHHHHHHHHH
Q 006276 96 RSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRK--GTKTDVAAILEEELHSARSAFEQARFSLV 173 (652)
Q Consensus 96 ~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K--~k~~~~~~E~~~eL~~~Rk~f~~aslDyv 173 (652)
...+...++.||..|+.. +..++..=++=+....+||++..++.++.. +++..++..++.+|..++..|...--++.
T Consensus 85 ~~~l~~~Vl~Pl~~~~s~-f~~i~k~I~KR~~KllDYDr~r~~~~kL~~K~~kde~KL~kae~el~~Ak~~Ye~lN~~L~ 163 (211)
T cd07588 85 EEKLSDQVLGPLTAYQSQ-FPEVKKRIAKRGRKLVDYDSARHNLEALKAKKKVDDQKLTKAEEELQQAKKVYEELNTELH 163 (211)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHhHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555678999999999876 777776666677778899999999977643 34566788899999999999999999999
Q ss_pred HHHHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006276 174 TALSNVEAKKRFEFLEA-VSGTMDAHLRYFKQGYELLHQMEPYINQV 219 (652)
Q Consensus 174 ~~l~~l~~~k~~e~le~-l~~~~~aq~~ff~~g~e~~~~l~~~l~el 219 (652)
..|..+-..+ ..|+.+ +-+++.+|..||........++..-++.+
T Consensus 164 ~ELP~L~~~r-i~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~~l 209 (211)
T cd07588 164 EELPALYDSR-IAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMDGL 209 (211)
T ss_pred HHhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999986654 355655 45899999999999888888776666544
No 93
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=98.82 E-value=2.6e-06 Score=85.39 Aligned_cols=196 Identities=18% Similarity=0.182 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCC--CCcccc--Cc---hhHHHHHHHHHH
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHND--PISVAF--GG---PVMTKFTIALRE 87 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d--~~~~~~--~g---~~L~~f~~~lke 87 (652)
.++.++.++..++.-+++|.+.+++|.+++.....++..|+.++..+...... +..... .. ..+..+...+++
T Consensus 3 ~f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 82 (216)
T cd07599 3 QFEELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIVGPKESVGSHPAPESTLARLSRYVKALEE 82 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCcCcCCCCCcHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999877777788888888776542211 110000 00 234556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-cccCC-----ChhhHhHHHHHHHHH
Q 006276 88 IGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLS-LRKGT-----KTDVAAILEEELHSA 161 (652)
Q Consensus 88 l~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s-~~K~k-----~~~~~~E~~~eL~~~ 161 (652)
+.......+..+...++.|+..+... +.+++..=++=+....+||.+..++.+ +.+++ +..++..++.+|..+
T Consensus 83 l~~~~~~~l~~i~~~V~~P~~~~~~~-~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a 161 (216)
T cd07599 83 LKKELLEELEFFEERVILPAKELKKY-IKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEA 161 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHH
Confidence 65544445567889999999999986 788877777777888899999999877 65442 345577788999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 006276 162 RSAFEQARFSLVTALSNVEAKKRFEFLEAVS-GTMDAHLRYFKQGYELLHQM 212 (652)
Q Consensus 162 Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~-~~~~aq~~ff~~g~e~~~~l 212 (652)
+..|...--.+...|..+-.... +|+.+++ .|+..|.+||...+..+..+
T Consensus 162 ~~~y~~lN~~Lk~eLP~l~~~~~-~~~~~~~~~~~~~ql~~~~~~~~~l~~~ 212 (216)
T cd07599 162 KEEYEALNELLKSELPKLLALAD-EFLPPLFKSFYYIQLNIYYTLHEYLQEF 212 (216)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999877654 7787766 78889999999988877654
No 94
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=98.79 E-value=2.5e-06 Score=85.73 Aligned_cols=187 Identities=16% Similarity=0.193 Sum_probs=152.1
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHH
Q 006276 18 GLEESAEVLR---ERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (652)
Q Consensus 18 ~~E~~le~l~---~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~ 94 (652)
.++.+|+.|+ ..+..+++.++.|...+..+...+..|.+.|..++.-...+. .+..+..+|++++-+......
T Consensus 34 eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~~~----l~~~f~~~~~~~~~~~~~~~~ 109 (229)
T PF06456_consen 34 ELDAKLELLRDTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVREKSPA----LGEEFSANGEAQRSLAKQGET 109 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-CC----GHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554 468888899999999888888888999999988876311111 145899999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCh------hhHhHHHHHHHHHHHHHHHH
Q 006276 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKT------DVAAILEEELHSARSAFEQA 168 (652)
Q Consensus 95 l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~------~~~~E~~~eL~~~Rk~f~~a 168 (652)
|+..+... +.-|..|+...|...+..=++|+.++.+||+++...-.++....| ...+.+..+...+|..|.+.
T Consensus 110 L~~~l~~~-~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY~ay~~~lke~~~e~~~~~~~~~~~~r~~q~~~~~~k~rf~kL 188 (229)
T PF06456_consen 110 LLKALKRF-LSDLNTFRNKAIPDTLLTIKKYEDARFEYDAYRLWLKEMSDELDPDTAKQEPKFRVAQGNYQEAKERFDKL 188 (229)
T ss_dssp HHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSTSSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhcccchHHHHHHHHHHHHHHHHHH
Confidence 88766554 678999999999999999999999999999999999888744433 23466677889999999999
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 169 RFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELL 209 (652)
Q Consensus 169 slDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~ 209 (652)
..|.+.+|..|..++--.+-.+|..|..+...||....+.|
T Consensus 189 r~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~~l 229 (229)
T PF06456_consen 189 RSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNAQAL 229 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhC
Confidence 99999999999998888899999999999999999877654
No 95
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=98.77 E-value=1.4e-06 Score=87.44 Aligned_cols=187 Identities=17% Similarity=0.162 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCC--CCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG--HNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVE 100 (652)
Q Consensus 23 le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~--~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~ 100 (652)
++.+.=-+++|++.+++|..++..+..+...|.++|..++.. .... + ...|.+|.+++..++.|...+..+...+.
T Consensus 5 ~~~~~P~~e~lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~~s~~-s-~~lG~~L~~~s~~~r~i~~~~~~~~~~~~ 82 (219)
T PF08397_consen 5 MEDFNPAWENLVSLGKKYQKALRAMSQAAAAFFDALQKIGDMASNSRG-S-KELGDALMQISEVHRRIENELEEVFKAFH 82 (219)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567899999999999999998888889999999988741 1111 2 22478999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HhccccCCC----hh--hHhHHHHHHHHHHHHHHHHHH
Q 006276 101 HMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREK----FLSLRKGTK----TD--VAAILEEELHSARSAFEQARF 170 (652)
Q Consensus 101 ~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~k----y~s~~K~k~----~~--~~~E~~~eL~~~Rk~f~~asl 170 (652)
..++.||++.++.|.+.+....|.|++.....-..+.| ...+.|+.. +. .+.+.-..+......|.. -.
T Consensus 83 ~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~kgk~~~~~~~~~~~~~v~~~~~ele~-~~ 161 (219)
T PF08397_consen 83 SELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDELKKAESELKKLRKKSRKGKDDQKYELKEALQDVTERQSELEE-FE 161 (219)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTSCHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHHH-HH
Confidence 99999999999999999988888888776665555555 334434332 11 223333345555555543 34
Q ss_pred HHHHHHHHHhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006276 171 SLVTALSNVEAKKRFE-FLEAVSGTMDAHLRYFKQGYELLHQM 212 (652)
Q Consensus 171 Dyv~~l~~l~~~k~~e-~le~l~~~~~aq~~ff~~g~e~~~~l 212 (652)
....+-..++++++|- |++.++.+++....|+.++.+++.+.
T Consensus 162 ~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~ 204 (219)
T PF08397_consen 162 KQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEK 204 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666678888887 58999999999999999998887653
No 96
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.77 E-value=4.4e-08 Score=82.52 Aligned_cols=93 Identities=22% Similarity=0.354 Sum_probs=65.2
Q ss_pred eeeeEEEeccCCCC-CCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccc
Q 006276 293 TIRQGYLSKRSSNL-RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (652)
Q Consensus 293 ~~k~G~L~K~~~~~-~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 371 (652)
+++.|||-....++ ++.=|+|||||. ...|+||+...++
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt-~~~L~wykd~eeK--------------------------------------- 40 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLT-SESLSWYKDDEEK--------------------------------------- 40 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEe-cceeeeecccccc---------------------------------------
Confidence 36789998776554 345799999999 5667777766432
Q ss_pred cccceeecccceeeeCCCC--CCCcccEEEEeCC--------eeEEEEeCCHHHHHHHHHHHHHH
Q 006276 372 AARHTVNLLTSTIKVDADQ--SDLRFCFRIISPT--------KNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 372 ~~~~~i~l~~~~vk~~~~~--~~rrfcF~I~t~~--------r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
.+.+.|.|....++- .+. ..++|||+|..|+ +++.|.|+|++|++.|...+-.|
T Consensus 41 E~kyilpLdnLk~Rd-ve~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 41 EKKYMLPLDGLKLRD-IEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccceeeccccEEEe-ecccccCCCcEEEEEcCcccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 122334455555553 233 4678999999875 46899999999999999876443
No 97
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.77 E-value=5.1e-06 Score=82.49 Aligned_cols=189 Identities=15% Similarity=0.167 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHH
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~ 94 (652)
.++...+.|+.++..+.++......|+....++-.....|+.++..+++.. +.+ +...|..|++.+..+..++..
T Consensus 5 ~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E--~~~---L~~~L~~lae~~~~i~d~~q~ 79 (211)
T cd07598 5 QTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTE--NPS---LKQGLKNFAECLAALQDYRQA 79 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc--CHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999999998888888887777777788999998888754 111 235799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCChh--hHhHHHHHHHHHHHHHHHHH
Q 006276 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRK---GTKTD--VAAILEEELHSARSAFEQAR 169 (652)
Q Consensus 95 l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K---~k~~~--~~~E~~~eL~~~Rk~f~~as 169 (652)
-...+...+++||..|..- ++.+++.+|. .+..++..+.+..++.| +.+++ .+.+++.+|..++..|...+
T Consensus 80 qv~~l~~~v~epLk~Y~~l-~k~~k~~~K~---~~~ar~~~~~~~~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~r~s 155 (211)
T cd07598 80 EVERLEAKVVQPLALYGTI-CKHARDDLKN---TFTARNKELKQLKQLEKLRQKNPSDRQIISQAESELQKASVDANRST 155 (211)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877 5666666654 33333333333322221 12222 34578999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006276 170 FSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (652)
Q Consensus 170 lDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l 212 (652)
-.+-..|..++..+--+|=..+.+|+.++..|..+..+++...
T Consensus 156 ~~l~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~~kale~~~~~ 198 (211)
T cd07598 156 KELEEQMDNFEKQKIRDIKTIFSDFVLIEMLFHAKALEVYTAA 198 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877888888899999999999988877554
No 98
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=98.76 E-value=1.1e-06 Score=90.27 Aligned_cols=137 Identities=23% Similarity=0.306 Sum_probs=117.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHH
Q 006276 75 GPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAIL 154 (652)
Q Consensus 75 g~~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~ 154 (652)
+.+|.+|+.+..+|+..|...-..+...|..||...++.+|..+..+||+.+..+..||.+..++.+.. +|+...++
T Consensus 151 ~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~~~---~pekee~~ 227 (289)
T PF10455_consen 151 SKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNTDFKKANKARKKVENSRLQFDAARANLKNKA---KPEKEEQL 227 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---CcccCHHH
Confidence 457999999999999999999999999999999999999999999999999999999999999976632 23332344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006276 155 EEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (652)
Q Consensus 155 ~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l 216 (652)
..+|..+--.|-.+.-+-+..|..+-.. .+++..|..|+.||..||+.+.+.+.++-+.+
T Consensus 228 r~~lE~aEDeFv~aTeeAv~~Mk~vl~~--~e~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~l 287 (289)
T PF10455_consen 228 RVELEQAEDEFVSATEEAVEVMKEVLDN--SEPLRLLKELVKAQLEYHKKAAEALSELLKSL 287 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5567777789999999999999998766 36899999999999999999999998765443
No 99
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=98.76 E-value=2.5e-06 Score=82.90 Aligned_cols=187 Identities=18% Similarity=0.192 Sum_probs=149.5
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHH
Q 006276 18 GLEESAEVLRE---RSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (652)
Q Consensus 18 ~~E~~le~l~~---~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~ 94 (652)
.+|.+++.|+. .+..+++.+++|...+-.+...++.|.+.|..++.- ++.. ...+..|+++.+-+...-..
T Consensus 3 eLeaklE~L~~~q~~Y~~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k--~p~l----~~af~~~aet~k~l~kng~~ 76 (201)
T cd07660 3 ELEAQIEVLRDTQRKYESVLRLARALASQFYQMLQTQKALGDAFADLSQK--SPEL----QEEFTYNAETQKLLCKNGET 76 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ChHH----HHHHHHHHHHHHHHHHhHHH
Confidence 35666666655 688999999999988888877788999999887652 2211 13678899999999987777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCC----ChhhHhHHHHHHHHHHHHHHHHHH
Q 006276 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT----KTDVAAILEEELHSARSAFEQARF 170 (652)
Q Consensus 95 l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k----~~~~~~E~~~eL~~~Rk~f~~asl 170 (652)
|...+ +.++.-|..|+...|......-++|+.++.+||+++.....+.-.. .....+++..+...+|..|.+..-
T Consensus 77 Ll~al-~~f~s~l~T~~~kai~DT~lTI~~ye~aR~EYdayr~D~ee~~~~~~~~~~l~r~~~~q~~~~~~k~kf~KLR~ 155 (201)
T cd07660 77 LLGAL-NFFVSSLNTLVNKTMEDTLMTVKQYESARIEYDAYRNDLEALNLGPRDAATSARLEEAQRRFQAHKDKYEKLRN 155 (201)
T ss_pred HHHHH-HHHHHHHHHHHHhhccHHHHHHHHHHhhhHhHHHHhccHHHcccCCCccchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 76554 4557789999999999999999999999999999997665543322 223456677788999999999999
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 171 SLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (652)
Q Consensus 171 Dyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~ 211 (652)
|.+.+|.-+..++--.+..+|..|+.|...||..+.+.+++
T Consensus 156 DV~~Kl~lLeenrv~vm~~QL~~f~~a~~ay~sgn~~~L~~ 196 (201)
T cd07660 156 DVSVKLKFLEENKVKVMHKQLLLFHNAISAYFSGNQKQLEQ 196 (201)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999998888788999999999999999998888765
No 100
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.68 E-value=1.8e-07 Score=83.02 Aligned_cols=107 Identities=16% Similarity=0.223 Sum_probs=72.0
Q ss_pred ceeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCC-CCCCCCCCcccccCcccccccccccccccccCCCCCCcc
Q 006276 292 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (652)
Q Consensus 292 ~~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 370 (652)
..+++|-|.|-+... +.++.|||+|.++-++|+.++..+ ...| .. ...
T Consensus 3 elI~EG~L~ki~~~~-~~~q~R~~FLFd~~Li~CK~~~~~~~~~g-----------------~~-------------~~~ 51 (112)
T cd01261 3 EFIMEGTLTRVGPSK-KAKHERHVFLFDGLMVLCKSNHGQPRLPG-----------------AS-------------SAE 51 (112)
T ss_pred cccccCcEEEEeccc-CCcceEEEEEecCeEEEEEeccCcccccc-----------------cc-------------cce
Confidence 457899999885433 678999999996555555433321 0000 00 111
Q ss_pred ccccceeecccceeeeCCCCCCCcccEEEEeC-CeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006276 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIAS 429 (652)
Q Consensus 371 ~~~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~-~r~~~lqA~se~e~~~Wi~ai~~ai~~ 429 (652)
..-.+.+++....|.-.++..+.++.|.|++. .+++.|+|.|++|..+||++|..+|.+
T Consensus 52 y~~k~~~~l~~~~V~d~~d~~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 52 YRLKEKFFMRKVDINDKPDSSEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred EEEEEEEeeeeeEEEEcCCCcccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 12234555555555544555556899999985 688999999999999999999988753
No 101
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=98.67 E-value=1.8e-05 Score=77.91 Aligned_cols=191 Identities=14% Similarity=0.144 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHH-HHHHHH
Q 006276 17 QGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIG-TYKEVL 95 (652)
Q Consensus 17 ~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~-~~~~~l 95 (652)
...|.....++.-.++|.|.+++|.+++..+..++..|+++|..|-...-+... -+...+.....++ .+...+
T Consensus 15 e~~errf~~lE~~~~kL~Ke~K~Y~dav~~m~~sq~~~se~l~e~Y~p~~~g~~------~~~~~~~~~d~~~~dl~~~l 88 (211)
T cd07611 15 EEYVQNFKRQETEGTRLQRELRAYLAAIKGMQEASKKLTESLHEVYEPDWYGRD------DVKTIGEKCDLLWEDFHQKL 88 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc------hHHHHHhhHHHHHHHHHHHH
Confidence 345566677778889999999999999888888899999999887642211100 0111122222222 233333
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCChhhHhHHHHHHHHHHHHHHHHHHHHH
Q 006276 96 RSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSL--RKGTKTDVAAILEEELHSARSAFEQARFSLV 173 (652)
Q Consensus 96 ~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~--~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv 173 (652)
+ ..++.|+..|+.. +..+++.=++=+....+||++..++..+ ++.++..++..++.+|..++..|...-=.+.
T Consensus 89 v----~~vl~P~~~~~s~-f~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk 163 (211)
T cd07611 89 V----DGALLTLDTYLGQ-FPDIKNRIAKRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQ 163 (211)
T ss_pred H----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3379999999876 7777766666677788999999999766 3455667788899999999999999888888
Q ss_pred HHHHHHhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006276 174 TALSNVEAKKRFEFLE-AVSGTMDAHLRYFKQGYELLHQMEPYINQV 219 (652)
Q Consensus 174 ~~l~~l~~~k~~e~le-~l~~~~~aq~~ff~~g~e~~~~l~~~l~el 219 (652)
..|..|-..+ +.|+. .+=+++..|..||........++..-++.+
T Consensus 164 ~ELP~L~~~R-i~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~~l 209 (211)
T cd07611 164 EELPSLWSRR-VGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMTKL 209 (211)
T ss_pred HHHHHHHHhh-hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888886553 34444 555888999999988888777776666544
No 102
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=98.64 E-value=2e-05 Score=77.62 Aligned_cols=191 Identities=14% Similarity=0.151 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHH
Q 006276 18 GLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRS 97 (652)
Q Consensus 18 ~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~ 97 (652)
..|.....++.-.++|.|.+++|.+++..+..++..|+++|..|-...-+... -+..+.....++ ...+..
T Consensus 16 ~~e~rf~~le~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~Y~~~~~~~~------~~~~v~e~~d~~---~~~~~~ 86 (211)
T cd07612 16 QCAMNLNMQQSDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDIYEPDWDGHE------DLGAIVEGEDLL---WNDYEA 86 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCccc------HHHHHHhccHHH---HHHHHH
Confidence 44555566677788888888888888877777888999999887643222111 122233333333 334445
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 98 QVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSL--RKGTKTDVAAILEEELHSARSAFEQARFSLVTA 175 (652)
Q Consensus 98 ~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~--~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~ 175 (652)
.+...++.||..|+.. +..+++.=++=+....+||++..++..+ +++++..++..++.+|..++..|...--++...
T Consensus 87 ~~~~~vL~pi~~~~s~-f~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~lN~~L~~E 165 (211)
T cd07612 87 KLHDQALRTMESYMAQ-FPDVKERVAKRGRKLVDYDSARHHLEALQNAKKKDDAKIAKAEEEFNRAQVVFEDINRELREE 165 (211)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667799999999876 7777776666677788999999998665 345567778889999999999999999899999
Q ss_pred HHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006276 176 LSNVEAKKRFEFLEA-VSGTMDAHLRYFKQGYELLHQMEPYINQV 219 (652)
Q Consensus 176 l~~l~~~k~~e~le~-l~~~~~aq~~ff~~g~e~~~~l~~~l~el 219 (652)
|..|-..+ +.|+.+ +=+++..|..||.....++.++..-++.+
T Consensus 166 LP~L~~~R-i~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~~l 209 (211)
T cd07612 166 LPILYDSR-IGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMKKL 209 (211)
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99986553 345554 45888999999999888888777666554
No 103
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=98.64 E-value=1.4e-05 Score=77.23 Aligned_cols=186 Identities=17% Similarity=0.167 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVE 100 (652)
Q Consensus 21 ~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~ 100 (652)
++++..+..++.+++.++.+...+-++...+.+|.+.+..++.-...+. ....+..|++..+.+...-..|+..+.
T Consensus 9 e~L~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~~p~----l~eeF~~~ae~hR~l~k~G~~ll~ai~ 84 (215)
T cd07659 9 EELEQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREPQPA----ASEAFTKFGEAHRSIEKFGIELLKTLK 84 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChh----HHHHHHHhHHHHHHHHHhHHHHHHHhH
Confidence 4445555678889999999988877777778899999988865321111 123688999999999998888886655
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCC--------ChhhHhHHHHHH-------HHHHHHH
Q 006276 101 HMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT--------KTDVAAILEEEL-------HSARSAF 165 (652)
Q Consensus 101 ~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k--------~~~~~~E~~~eL-------~~~Rk~f 165 (652)
. ++.-|..+++..|..-+..-|+|+.++-+||+...+...+.-.- ..-.+.....+. ..+|..|
T Consensus 85 ~-~~s~l~T~l~KaipDT~lTikkY~~ar~EY~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~kf 163 (215)
T cd07659 85 P-MLSDLGTYLNKAIPDTKLTIKKYADVKFEYLSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRCRQEARARF 163 (215)
T ss_pred H-HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4 47789999999999999999999999999999999987763211 111122222233 7899999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 166 EQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (652)
Q Consensus 166 ~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~ 211 (652)
.+..-|...+|.-+..++-..+..+|..|+.|...||..+++.+++
T Consensus 164 ~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~~~~ 209 (215)
T cd07659 164 AKLRQDVLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHELLKE 209 (215)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999988889999999999999999999998753
No 104
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.46 E-value=3.2e-07 Score=78.05 Aligned_cols=35 Identities=9% Similarity=0.270 Sum_probs=30.7
Q ss_pred CcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006276 393 LRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (652)
Q Consensus 393 rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai 427 (652)
-+|-|..+-..-++.|..++|.|+.-||+||-.|.
T Consensus 76 g~~ff~avkegd~~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 76 GRHFFNAVKEGDELKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred chhhhheeccCcEEEEeccchHHHHHHHHHHHHHc
Confidence 46778888888899999999999999999997774
No 105
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.42 E-value=0.00012 Score=72.86 Aligned_cols=192 Identities=19% Similarity=0.179 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHH
Q 006276 12 FRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTY 91 (652)
Q Consensus 12 FRasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~ 91 (652)
+|..|..+|..+..+...+..+++....+... ...|..++..++....... ...+..+..|+..+..+...
T Consensus 9 ~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~-------~~elg~~~~~Ls~~e~~~~--~~l~~~~~~~~~~~~~~~~~ 79 (218)
T cd07596 9 AKDYILKLEEQLKKLSKQAQRLVKRRRELGSA-------LGEFGKALIKLAKCEEEVG--GELGEALSKLGKAAEELSSL 79 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhccccc--hhhHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666655554443 3557788888776432221 11245899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------hccccCC--Chh-------hHhHHH
Q 006276 92 KEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKF-------LSLRKGT--KTD-------VAAILE 155 (652)
Q Consensus 92 ~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky-------~s~~K~k--~~~-------~~~E~~ 155 (652)
...+.......+..||..++.. +..+++.=+.=+....+|+.+.... ..+.... .+. .+.+++
T Consensus 80 ~~~~~~~~~~~~~e~L~~y~~~-~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e 158 (218)
T cd07596 80 SEAQANQELVKLLEPLKEYLRY-CQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAE 158 (218)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH
Confidence 9999999999999999998765 6666655555444444444443333 2222111 111 245667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006276 156 EELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQME 213 (652)
Q Consensus 156 ~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~ 213 (652)
.++..++..|...+-.....|..++..+..+|-..+..|+..|..|+++..+.+..+.
T Consensus 159 ~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~ 216 (218)
T cd07596 159 SALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLL 216 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7788889999999988899999999888889999999999999999999999987764
No 106
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.39 E-value=0.00015 Score=70.91 Aligned_cols=177 Identities=18% Similarity=0.226 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHH
Q 006276 18 GLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRS 97 (652)
Q Consensus 18 ~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~ 97 (652)
.+.+.++.|+..|.++-|...+++....++......|...+..++....+. ++..|..|+..+..+......+..
T Consensus 8 ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~-----L~~~l~~~~~~~~~~s~~~~~l~~ 82 (185)
T cd07628 8 EIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGE-----ITEPFKIFSESLSQFSTSLRVLNK 82 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh-----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444444444567888888887643321 256899999999999988888888
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 98 QVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALS 177 (652)
Q Consensus 98 ~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~ 177 (652)
.+...+..||..++.- +..++..-+.=+..+.+|+.+.+- + ...++..++..|....-+....+.
T Consensus 83 ~~~~~f~~~Lkd~~~y-~~s~k~~lk~R~~kq~d~e~l~e~-l-------------l~~~ve~a~~~~e~f~~~~~~E~~ 147 (185)
T cd07628 83 YTDENYLTSLKDLLHY-ILSLKNLIKLRDQKQLDYEELSDY-L-------------LTDEVENAKETSDAFNKEVLKEYP 147 (185)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHH-H-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999877 777777777777888888775533 2 344667888899999888999999
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006276 178 NVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (652)
Q Consensus 178 ~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~ 214 (652)
.++.-+..++-+.|.+|..+|..||+++.+.+..+.|
T Consensus 148 rF~~~k~~elk~~l~~~a~~qi~~y~~~~~~W~~~~~ 184 (185)
T cd07628 148 NFERIKKQEIKDSLGALADGHIDFYQGLVEDWEKVEP 184 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999888877643
No 107
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=98.38 E-value=0.00015 Score=72.42 Aligned_cols=185 Identities=16% Similarity=0.137 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCC-CCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 29 RSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG-HNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRL 107 (652)
Q Consensus 29 ~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~-~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL 107 (652)
-+++++..+++|..++..+..+...|.++|..++.. .... .....|.+|..++..++.+.+..+.+...+...++.||
T Consensus 21 ~~~~li~~~~~Y~kal~a~~~a~~~~~dAl~kia~~A~~s~-~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pL 99 (223)
T cd07605 21 VLRNLIKAGKKYQKALQALSQAAKVFFDALAKIGELASQSR-GSQELGEALKQIVDTHKSIEASLEQVAKAFHGELILPL 99 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688899999999998888888889999999887642 1111 33345789999999999999999999888999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHhccccC-------CChhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 108 LQYVNIDLHEVKEARKCFDKASL----LYDQAREKFLSLRKG-------TKTDVAAILEEELHSARSAFEQARFSLVTAL 176 (652)
Q Consensus 108 ~~f~~~di~~~ke~Rk~Fek~~~----~YD~al~ky~s~~K~-------k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l 176 (652)
+.=++.|.+.+....|+|.+... .++.+......+.|+ +.++.+.++-+++-.....+++.--+-+...
T Consensus 100 e~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~a 179 (223)
T cd07605 100 EKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFVSQGLRDA 179 (223)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877777766665 455444444333332 2334444444444444444444433333333
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006276 177 SNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (652)
Q Consensus 177 ~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~ 214 (652)
-.-+-++..-||+.++.+++....|+..+..++.+.-|
T Consensus 180 l~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~~l~ 217 (223)
T cd07605 180 LLEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLSTRLP 217 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33333444467889999999999999999998865433
No 108
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=98.38 E-value=0.00018 Score=72.92 Aligned_cols=190 Identities=18% Similarity=0.264 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 006276 20 EESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQV 99 (652)
Q Consensus 20 E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~ 99 (652)
.+.++.|+..|+++.+.+..++....++..+...|..++..++....+. ..+..|..|+.....+...........
T Consensus 30 ~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~----~l~~~l~~l~~~~~~~~~~~~~~a~~~ 105 (236)
T PF09325_consen 30 KDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEK----SLSEALSQLAEAFEKISELLEEQANQE 105 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc----hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555566666666666555554544444566788888887643331 124589999999999999988888888
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHHHHHHHHHhccccC--CChhh-------HhHHHHHHHHHHH
Q 006276 100 EHMLNDRLLQYVNIDLHEVKEA-------RKCFDKASLLYDQAREKFLSLRKG--TKTDV-------AAILEEELHSARS 163 (652)
Q Consensus 100 ~~~i~~pL~~f~~~di~~~ke~-------Rk~Fek~~~~YD~al~ky~s~~K~--k~~~~-------~~E~~~eL~~~Rk 163 (652)
...+..||..++.. +..+++. ...|+.+...++...+.+..+... ..+++ +.+++..+..++.
T Consensus 106 ~~~l~~~L~ey~~~-~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~ 184 (236)
T PF09325_consen 106 EETLGEPLREYLRY-IESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKD 184 (236)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999988655 4444433 233444455555555555444333 12222 3445556777888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006276 164 AFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (652)
Q Consensus 164 ~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~ 214 (652)
.|...+-..-..+..++..+..+|-..|..|+..|..|.++..+.|+.+-|
T Consensus 185 ~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~ 235 (236)
T PF09325_consen 185 EFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLP 235 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 888888888888999999889999999999999999999999999987643
No 109
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.38 E-value=1.2e-06 Score=76.28 Aligned_cols=97 Identities=25% Similarity=0.346 Sum_probs=57.2
Q ss_pred eeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccccc
Q 006276 295 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 374 (652)
Q Consensus 295 k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 374 (652)
.+|+|+.|.. .+++|||+||+|+..|+.| ..+......... ..+ .. .
T Consensus 2 ~~g~LylK~~-gkKsWKk~~f~LR~SGLYy-~~Kgksk~srdL-------------~cl----~~--------------f 48 (114)
T cd01259 2 MEGPLYLKAD-GKKSWKKYYFVLRSSGLYY-FPKEKTKNTRDL-------------ACL----NL--------------L 48 (114)
T ss_pred ccceEEEccC-CCccceEEEEEEeCCeeEE-ccCCCcCCHHHH-------------HHH----Hh--------------c
Confidence 4899999853 4489999999999888544 433322110000 000 00 0
Q ss_pred ceeec---ccceeeeCCCCCCCcccEEEEeCC-------eeEEEEeCCHHHHHHHHHHHHHHH
Q 006276 375 HTVNL---LTSTIKVDADQSDLRFCFRIISPT-------KNYTLQAESALDQMDWIEKITGVI 427 (652)
Q Consensus 375 ~~i~l---~~~~vk~~~~~~~rrfcF~I~t~~-------r~~~lqA~se~e~~~Wi~ai~~ai 427 (652)
...++ +...-+..+ .-.|||-|..+. -..+|+||+|..+..||.||+-+.
T Consensus 49 ~~~nvY~~~~~kKk~kA---PTd~~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 49 HGHNVYTGLGWRKKYKS---PTDYCFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred ccCcEEEEechhhccCC---CCCceEEEeccccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 00111 111112112 236899887653 136999999999999999998764
No 110
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=98.36 E-value=2.2e-07 Score=105.06 Aligned_cols=100 Identities=25% Similarity=0.403 Sum_probs=71.6
Q ss_pred cCCCceeeeEEEeccCCCCCCCceeEEEEEecC-ceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCC
Q 006276 288 KGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSR-GMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV 366 (652)
Q Consensus 288 ~~~~~~~k~G~L~K~~~~~~~~WkrR~f~L~~~-g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 366 (652)
++....+.+|||+||+ ...+.|+.|||||+.+ ..|+||....+.
T Consensus 1629 ~~teNr~~eG~LyKrG-A~lK~Wk~RwFVLd~~khqlrYYd~~edt---------------------------------- 1673 (1732)
T KOG1090|consen 1629 PPTENRIPEGYLYKRG-AKLKLWKPRWFVLDPDKHQLRYYDDFEDT---------------------------------- 1673 (1732)
T ss_pred CcccccCcccchhhcc-hhhcccccceeEecCCccceeeecccccc----------------------------------
Confidence 3334456699999995 4569999999999875 568888665431
Q ss_pred CCccccccceeeccc--ceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006276 367 HDEKSAARHTVNLLT--STIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (652)
Q Consensus 367 ~~~~~~~~~~i~l~~--~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai 427 (652)
.+.+.|+|.. +..-..+...|++--|++.+..|+|.|.|.+-.+..+|++.|+.++
T Consensus 1674 -----~pkG~IdLaevesv~~~~~k~vdekgffdlktt~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1674 -----KPKGCIDLAEVESVALIGPKTVDEKGFFDLKTTNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred -----cccchhhhhhhhhhcccCccccCccceeeeehhhHHHHHHhccchHHHHHHHHHHHhh
Confidence 1223333321 1001123556777779999999999999999999999999999876
No 111
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.31 E-value=0.00016 Score=71.70 Aligned_cols=180 Identities=17% Similarity=0.240 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYK 92 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~ 92 (652)
+..|..|+..|..+++....++|.-+.+.. ....|..++..++....+ . +..|..|+.....+....
T Consensus 20 ~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~-------~~~efg~~~~~ls~~E~~---L---~~~L~~~~~~~~~~~~~~ 86 (200)
T cd07624 20 NEYLTLFGEKLGTIERISQRIHKERIEYFD-------ELKEYSPIFQLWSASETE---L---APLLEGVSSAVERCTAAL 86 (200)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcchh---H---HHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555544444433 345678888888764321 1 458999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHH
Q 006276 93 EVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSL 172 (652)
Q Consensus 93 ~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDy 172 (652)
..+.......+..||..++.- +..+|..=+.=+..+.+|+.+..-..... .+...++..++..|..+.-++
T Consensus 87 ~~l~~~~~~~f~e~Lkey~~y-~~svk~~l~~R~~~q~~~e~~~e~L~~k~--------~~l~~ev~~a~~~~e~~~~~~ 157 (200)
T cd07624 87 EVLLSDHEFVFLPPLREYLLY-SDAVKDVLKRRDQFQIEYELSVEELNKKR--------LELLKEVEKLQDKLECANADL 157 (200)
T ss_pred HHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 999888888999999998665 55555555555567888877665532211 115667888999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006276 173 VTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (652)
Q Consensus 173 v~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~ 214 (652)
...+..++..|..+|-..|.+|...|..|++++.+.+..+-|
T Consensus 158 ~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~~We~~~p 199 (200)
T cd07624 158 KADLERWKQNKRQDLKKILLDMAEKQIQYYEQCLAAWEEVLP 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999888877644
No 112
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=98.30 E-value=0.00028 Score=67.81 Aligned_cols=190 Identities=15% Similarity=0.163 Sum_probs=140.0
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHH
Q 006276 18 GLEESAEVLRE---RSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (652)
Q Consensus 18 ~~E~~le~l~~---~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~ 94 (652)
.+|.+|+.++. ....+++.+++|...+-.+...+..+...|...+.. |.. ..|..+...+.++-.-+..+..
T Consensus 3 ELdakielfrsvq~t~~~Llk~i~~yq~~l~~lsq~e~~LG~fl~e~~~~--d~t---~ag~~m~~t~KaL~~sg~qrl~ 77 (204)
T cd07661 3 ELDAKLELFRSVQDTCLELLKIIDNYQERLCILSQEENVLGKFLKEQGKI--DKT---TAGKMMAATGKALSFSSQQRLA 77 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--Chh---hhccHHHHHHHHHHHhHHHHHH
Confidence 46777777765 577788888888887777666677888888776542 111 1133555566665444443333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCC------ChhhHhHHHHHHHHHHHHHHHH
Q 006276 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT------KTDVAAILEEELHSARSAFEQA 168 (652)
Q Consensus 95 l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k------~~~~~~E~~~eL~~~Rk~f~~a 168 (652)
+... -..+..-|..|+...|..-...-+.+|.++.+||+++.-.-..+..- ..++.+.+..++...|..|...
T Consensus 78 ~r~p-l~~f~~~v~Tf~~rai~Dtl~Ti~~~E~aR~EY~a~~~~mk~~s~eldP~~~~~l~kfr~aQ~qvr~~K~kfdkL 156 (204)
T cd07661 78 LRVP-LLRLYQEVETFRERAIADTLQTIQRMEKCRTEYRAALLWMKSVSQELDPDTYKQLEKFRKAQAQVRSAKERFDKL 156 (204)
T ss_pred HHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 24567778889998898888999999999999999999885555433 2345677888999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006276 169 RFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQME 213 (652)
Q Consensus 169 slDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~ 213 (652)
..|.+.++..|...+--.+=..|+.|-.+...||.+....|..+.
T Consensus 157 k~Dv~qKvdlL~asR~n~ls~~L~~yqnal~~y~~kt~~~~~~i~ 201 (204)
T cd07661 157 KMDVCQKVDLLGASRCNLLSHALVTYQNTLLQFWEKTSRTMATIH 201 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887656667888999999999998888776653
No 113
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.25 E-value=1.1e-05 Score=70.59 Aligned_cols=92 Identities=23% Similarity=0.370 Sum_probs=62.2
Q ss_pred CCceeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCc
Q 006276 290 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (652)
Q Consensus 290 ~~~~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 369 (652)
...++++|+|.|+.+ . .+++|+|+|.+...|+|.......
T Consensus 10 ge~Il~~g~v~K~kg-l--~~kkR~liLTd~PrL~Yvdp~~~~------------------------------------- 49 (104)
T PF14593_consen 10 GELILKQGYVKKRKG-L--FAKKRQLILTDGPRLFYVDPKKMV------------------------------------- 49 (104)
T ss_dssp T--EEEEEEEEEEET-T--EEEEEEEEEETTTEEEEEETTTTE-------------------------------------
T ss_pred CCeEEEEEEEEEeec-e--EEEEEEEEEccCCEEEEEECCCCe-------------------------------------
Confidence 346899999999954 3 289999999977788887654321
Q ss_pred cccccceeecccc-eeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHHHh
Q 006276 370 KSAARHTVNLLTS-TIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASL 430 (652)
Q Consensus 370 ~~~~~~~i~l~~~-~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~~~ 430 (652)
..+.|.+..+ .+.. .+ .-.|.|.+|+|+|+|.. .+.+...|+++|+.++...
T Consensus 50 ---~KGeI~~~~~l~v~~--k~---~~~F~I~tp~RtY~l~d-~~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 50 ---LKGEIPWSKELSVEV--KS---FKTFFIHTPKRTYYLED-PEGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp ---EEEEE--STT-EEEE--CS---SSEEEEEETTEEEEEE--TTS-HHHHHHHHHHHHHHH
T ss_pred ---ECcEEecCCceEEEE--cc---CCEEEEECCCcEEEEEC-CCCCHHHHHHHHHHHHHHh
Confidence 1233444322 2222 11 24799999999999987 5666888999999998754
No 114
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=98.21 E-value=0.0004 Score=68.48 Aligned_cols=178 Identities=13% Similarity=0.148 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHH-HHHH
Q 006276 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGT-YKEV 94 (652)
Q Consensus 16 v~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~-~~~~ 94 (652)
.+..|.....++..++++.|.++.|.+++.....++..+++++..+........ ......|...+.++.. ....
T Consensus 7 fd~~e~rF~~~e~~~~~l~kd~k~Y~~~~~~~~~~~~~~~~~~~d~y~~~~~~~-----~~~~~~~~~~~~~~~~~~~~e 81 (195)
T cd07589 7 FDELEKKFGSLEKQVQLVVRNVELYLQHVQESVLVKVLALEVVLDLYPSNHPRL-----ESKWERFRRVVRGISSKALPE 81 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhh-----HHHHHHHHHHHHHHHHHHHHH
Confidence 356777888889999999999999999887776556666677766643211111 0134566666666655 3456
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 006276 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVT 174 (652)
Q Consensus 95 l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~ 174 (652)
+...+...++.|+..++.- +.+++..=++=+....+||...++...+ ..++.++..++..|...--.+..
T Consensus 82 ~~~~i~~~V~~Pl~~~~~~-~~~~~k~I~KR~~KllDYdr~~~~~~k~---------~k~e~~l~~a~~~y~~lN~~L~~ 151 (195)
T cd07589 82 FKSRVRKLVIEPLSSLLKL-FSGPQKLIQKRYDKLLDYERYKEKKERG---------GKVDEELEEAANQYEALNAQLKE 151 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHhhhhccHHHHHHHHHhh---------cchHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999876 6666655555566678899888875442 22467889999999999999999
Q ss_pred HHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHH
Q 006276 175 ALSNVEAKKRFEFL-EAVSGTMDAHLRYFKQGYELL 209 (652)
Q Consensus 175 ~l~~l~~~k~~e~l-e~l~~~~~aq~~ff~~g~e~~ 209 (652)
.|..+-.... .++ -++.+|+..|.+||...++.+
T Consensus 152 ELP~l~~~~~-~~l~~~~~s~~~~Q~~~~~~~~~~~ 186 (195)
T cd07589 152 ELPKFNQLTA-QLLETCLKSFVELQRDLYDTLLKRA 186 (195)
T ss_pred HhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999876655 455 456689999999998887765
No 115
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.19 E-value=1.4e-05 Score=69.56 Aligned_cols=105 Identities=24% Similarity=0.446 Sum_probs=63.9
Q ss_pred eeEEEeccCC-CC--CCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccc
Q 006276 295 RQGYLSKRSS-NL--RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (652)
Q Consensus 295 k~G~L~K~~~-~~--~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 371 (652)
.||||..... +. ++.|+|+|.+|.+..++.| ..+.+....+.. + .+ |...
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lY-d~e~~~~~~~p~-----~------------vl---------dl~~ 54 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFY-NDEQDKENSTPS-----M------------IL---------DIDK 54 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEE-ecCccccCCCcE-----E------------EE---------Eccc
Confidence 4899975543 33 3689999999996555554 444332110000 0 00 0000
Q ss_pred cccceeecccceeeeCCCCCCCcccEEEEeCC--eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006276 372 AARHTVNLLTSTIKVDADQSDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIA 428 (652)
Q Consensus 372 ~~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~--r~~~lqA~se~e~~~Wi~ai~~ai~ 428 (652)
....-.+..+.+. .++..|.++-|.|.... ++.+|-|+|+.|++.|+.+|..-|.
T Consensus 55 -~fhv~~V~asDVi-~a~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~~ 111 (112)
T cd01242 55 -LFHVRPVTQGDVY-RADAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKIP 111 (112)
T ss_pred -eeeeecccHHHee-ecCcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhcc
Confidence 0000111222232 35666889999999876 7899999999999999999987764
No 116
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=98.16 E-value=0.0009 Score=67.49 Aligned_cols=188 Identities=14% Similarity=0.153 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (652)
Q Consensus 22 ~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~ 101 (652)
.|+.|+..|+++.+.+..++..-.++-.+...|+.++..++...... . ++..|..+++....+.........+...
T Consensus 20 ~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~-~---Ls~al~~la~~~~ki~~~~~~qa~~d~~ 95 (224)
T cd07623 20 QIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHT-S---LSRALSQLAEVEEKIEQLHGEQADTDFY 95 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-h---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666555544444444567888888887643221 1 2458999999999999988888888888
Q ss_pred HHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHHHHHHhccccCCChhh-------HhHHHHHHHHHHHHHHH
Q 006276 102 MLNDRLLQYVNIDLHEVK-------EARKCFDKASLLYDQAREKFLSLRKGTKTDV-------AAILEEELHSARSAFEQ 167 (652)
Q Consensus 102 ~i~~pL~~f~~~di~~~k-------e~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~-------~~E~~~eL~~~Rk~f~~ 167 (652)
.+..||..++.. |..++ .....+..++..+.....+...+....++++ +.+++..+..+++.|..
T Consensus 96 ~l~e~L~eY~r~-i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~ 174 (224)
T cd07623 96 ILAELLKDYIGL-IGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEE 174 (224)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887654 33333 2222333333444444443333322222233 34556667788999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006276 168 ARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (652)
Q Consensus 168 aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~ 214 (652)
.+--.-..|..++..+-.+|-..|..|+..+..|-++..+++..+-|
T Consensus 175 is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~~p 221 (224)
T cd07623 175 ISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAFLP 221 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99888889999988888899999999999999999999998877654
No 117
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=98.14 E-value=0.0011 Score=66.97 Aligned_cols=188 Identities=15% Similarity=0.178 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (652)
Q Consensus 22 ~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~ 101 (652)
.|+.|+..|+++.+.+..++..=.++-.+...|+.++..++...... . ++..|..+++....+.........+...
T Consensus 30 yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~-~---ls~~l~~laev~~ki~~~~~~qa~~d~~ 105 (234)
T cd07664 30 QFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHT-A---LSRALSQLAEVEEKIDQLHQDQAFADFY 105 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc-h---HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45666677777777777665554444445567888888887642222 1 2458899998888888887777778788
Q ss_pred HHHHHHHHHHHhhhHHHH---HHHHH----HHHHHHHHHHHHHHHhccccCCChhhHh-------HHHHHHHHHHHHHHH
Q 006276 102 MLNDRLLQYVNIDLHEVK---EARKC----FDKASLLYDQAREKFLSLRKGTKTDVAA-------ILEEELHSARSAFEQ 167 (652)
Q Consensus 102 ~i~~pL~~f~~~di~~~k---e~Rk~----Fek~~~~YD~al~ky~s~~K~k~~~~~~-------E~~~eL~~~Rk~f~~ 167 (652)
.+..||..++.- |..+| ..|.+ +..+...+.....+...+....+++++. +.+.....+++.|..
T Consensus 106 ~l~e~L~eYiR~-i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~ 184 (234)
T cd07664 106 LFSELLGDYIRL-IAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQ 184 (234)
T ss_pred HHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888654 44433 33332 2222233332222222222112233433 445556667888888
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006276 168 ARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (652)
Q Consensus 168 aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~ 214 (652)
.+-..=..|..++..+--+|-..+..|+.++..+=++..+++..+-|
T Consensus 185 Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f~p 231 (234)
T cd07664 185 ISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLP 231 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88777778888887777799999999999999988888887766544
No 118
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=98.14 E-value=0.00077 Score=67.62 Aligned_cols=187 Identities=14% Similarity=0.161 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHH
Q 006276 14 KQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKE 93 (652)
Q Consensus 14 asv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~ 93 (652)
..|..+|.++..+.+.++.+++.=+.+.. +...|+.++..++..... ... +.+|.+|++....+.....
T Consensus 11 ~~i~~Le~~Lk~l~~~~~~l~~~r~ela~-------~~~efa~~~~~L~~~E~~-~~l---~~~l~~~a~~~~~~~~~~~ 79 (216)
T cd07627 11 QYLDSLESQLKQLYKSLELVSSQRKELAS-------ATEEFAETLEALSSLELS-KSL---SDLLAALAEVQKRIKESLE 79 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcc-hHh---HHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544444433 345678888888763222 111 3589999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHHHhccccC-C-Chhh-------HhHHHHH
Q 006276 94 VLRSQVEHMLNDRLLQYVNIDLHEVKE-------ARKCFDKASLLYDQAREKFLSLRKG-T-KTDV-------AAILEEE 157 (652)
Q Consensus 94 ~l~~~~~~~i~~pL~~f~~~di~~~ke-------~Rk~Fek~~~~YD~al~ky~s~~K~-k-~~~~-------~~E~~~e 157 (652)
....+....+..||..++.. +..++. ....|+.....++.+..+...+... + .+++ +.+++..
T Consensus 80 ~~a~~e~~~l~~~L~ey~r~-~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~ 158 (216)
T cd07627 80 RQALQDVLTLGVTLDEYIRS-IGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERR 158 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Confidence 88777777888888887655 444442 3333444444444433333222211 1 1222 3456667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006276 158 LHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (652)
Q Consensus 158 L~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l 212 (652)
...+++.|...+-..-..|..++..+-.+|-..|..|+.++..++++..+++..+
T Consensus 159 ~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f 213 (216)
T cd07627 159 ASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETF 213 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999998888999999988889999999999999999999998887654
No 119
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.10 E-value=3.2e-05 Score=68.47 Aligned_cols=108 Identities=17% Similarity=0.321 Sum_probs=61.6
Q ss_pred eeeEEEeccCC-CCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccc
Q 006276 294 IRQGYLSKRSS-NLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (652)
Q Consensus 294 ~k~G~L~K~~~-~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (652)
..||||..... +.++.|+|+|++|.+..++. |..+.....- |.+.. ...++. .|..
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~l-Yd~e~~k~~~----------p~~~~----~~vLdl------rD~~-- 59 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFL-YDIAEDRASQ----------PSVVI----SQVLDM------RDPE-- 59 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEeCCEEEE-EeCCccccCC----------ccCce----eEEEEc------CCCC--
Confidence 46899975543 45679999999998555554 5544321100 00000 000000 0000
Q ss_pred ccceeecccceeeeCCCCCCCcccEEEEe-------CCeeEEEEeCCHHHHHHHHHHHHHH
Q 006276 373 ARHTVNLLTSTIKVDADQSDLRFCFRIIS-------PTKNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 373 ~~~~i~l~~~~vk~~~~~~~rrfcF~I~t-------~~r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
...-.+..+.+. .++..|.++-|.|.+ +..+.+|-|+|+.|++.|+.||+.-
T Consensus 60 -fsV~~VtasDvi-~a~~kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 60 -FSVSSVLESDVI-HASKKDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred -EEEEEecHHHcc-ccCcccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 000011122222 355668899999997 2367899999999999999998754
No 120
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00058 Score=73.54 Aligned_cols=187 Identities=16% Similarity=0.171 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 25 VLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLN 104 (652)
Q Consensus 25 ~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~ 104 (652)
.++.--++|.|.+++|..++.-+..++..|++.+.++-.- +.... ..+....+....++. .+...+...++
T Consensus 41 ~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~p--~~~g~----~~l~~v~~~~d~l~~---d~~~~l~d~vl 111 (460)
T KOG3771|consen 41 KQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYEP--DWPGR----DYLQAVADNDDLLWK---DLDQKLVDQVL 111 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--ccccH----HHHHHHHHHHHHHHH---HHHHHHHHhhh
Confidence 3344456666666777766666655667788888664332 11111 133334344333433 45556778889
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006276 105 DRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRK--GTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAK 182 (652)
Q Consensus 105 ~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K--~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~ 182 (652)
.||+.|+.. +..++.+-.+=.....+||++..+|.++.+ +|+...+.-++.+|..+++.|..---++...|..|=..
T Consensus 112 ~pl~~~~~~-fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~kd~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~s 190 (460)
T KOG3771|consen 112 LPLDTYLGQ-FPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKKKDEAKLAKAEEELEKAQQVFEELNNELLEELPALYSS 190 (460)
T ss_pred hhHHHhhhh-chhHHHHHHhhcchhhhhHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998776 444444434444455689999987766543 33444455688899999999999999999888887544
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 006276 183 KRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLT 221 (652)
Q Consensus 183 k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~el~~ 221 (652)
+=-=|+-.+-.++..|..||..+..+...|..-+..|..
T Consensus 191 Rv~f~vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~kl~d 229 (460)
T KOG3771|consen 191 RVGFFVPTFQSLFNLQLVFHKEMSKLYKNLYDVLDKLFD 229 (460)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 322244566688899999999886666555544444443
No 121
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=98.03 E-value=0.0045 Score=61.00 Aligned_cols=190 Identities=18% Similarity=0.237 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHH
Q 006276 12 FRKQIQGLEESAEVLRERSLKFYKG-------CRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIA 84 (652)
Q Consensus 12 FRasv~~~E~~le~l~~~l~kl~K~-------~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~ 84 (652)
||..++.-|.++..+++.+..+-|. ...|+-.++++-.-...|+..+..|++...-+.. ..|.+|++.
T Consensus 2 ~~~~~~~rd~q~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~~~l~-----~~L~~fae~ 76 (219)
T PF06730_consen 2 FRRELRSRDSQTKFIQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTENPNLK-----LGLKNFAEC 76 (219)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCCccHh-----hHHHHHHHH
Confidence 5555666666665555555444443 3345555555554456788888888764333321 279999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHH
Q 006276 85 LREIGTYKEVLRSQVEHMLNDRLLQYVN------IDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEEL 158 (652)
Q Consensus 85 lkel~~~~~~l~~~~~~~i~~pL~~f~~------~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL 158 (652)
+..+.+|+...+..++..+++||..+-. .+|+....+|++=-+....+|.+..|.-+- ...+..++.+|
T Consensus 77 la~vqDYRqa~v~RlE~KVv~pL~~Y~~~cK~~r~elK~~~~ar~kEikq~~~Leklr~k~psd-----r~~isqae~el 151 (219)
T PF06730_consen 77 LAKVQDYRQAEVERLEAKVVEPLSQYGTICKHARDELKKFNKARNKEIKQLKQLEKLRQKNPSD-----RQIISQAESEL 151 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc-----chhhhHHHHHH
Confidence 9999999999999999999999999853 333333344444444444444443331111 11244566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 159 HSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (652)
Q Consensus 159 ~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~ 211 (652)
..+...-....-.+-..|..++.++=-++-..+.+|+.....|-.++.+++..
T Consensus 152 ~kas~~~~rt~~~Lee~i~~FEkqKl~DlK~i~sdFv~iEM~fHaKALEv~T~ 204 (219)
T PF06730_consen 152 QKASVDATRTTKQLEETIDNFEKQKLKDLKKIFSDFVTIEMVFHAKALEVYTA 204 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777778888887776678888889999999999888888743
No 122
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.02 E-value=1.8e-05 Score=69.33 Aligned_cols=33 Identities=21% Similarity=0.532 Sum_probs=23.9
Q ss_pred eeeEEEeccCCCCCCCceeEEEEEecCceEEEEe
Q 006276 294 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYR 327 (652)
Q Consensus 294 ~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~ 327 (652)
+||||+.--+..- +.|||+|+.|+..++-+|..
T Consensus 1 lkEGWmVHyT~~d-~~rKRhYWrLDsK~Itlf~~ 33 (117)
T cd01239 1 LKEGWMVHYTSSD-NRRKKHYWRLDSKAITLYQE 33 (117)
T ss_pred CccceEEEEecCc-cceeeeEEEecCCeEEEEEc
Confidence 4799997554332 68999999999777665543
No 123
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=98.00 E-value=0.003 Score=63.69 Aligned_cols=188 Identities=14% Similarity=0.111 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVE 100 (652)
Q Consensus 21 ~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~ 100 (652)
..|+.|+..|+++.+.+..++..=.++..+...|+.++..++..-.+.. ++.+|..+++....+.........+..
T Consensus 29 ~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~----Ls~als~laev~~~i~~~~~~qa~qd~ 104 (234)
T cd07665 29 QEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTA----LSRALSQLAEVEEKIEQLHQEQANNDF 104 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777776655444444455678888888876432221 245899999998888888888888888
Q ss_pred HHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHH----HhccccCCChhhHh-------HHHHHHHHHHHHHH
Q 006276 101 HMLNDRLLQYVNIDLHEVK---EARKCFDKASLLYDQAREK----FLSLRKGTKTDVAA-------ILEEELHSARSAFE 166 (652)
Q Consensus 101 ~~i~~pL~~f~~~di~~~k---e~Rk~Fek~~~~YD~al~k----y~s~~K~k~~~~~~-------E~~~eL~~~Rk~f~ 166 (652)
.++..||..++.- |..+| ..|.+-......-++-+.+ ...+....+++++. +++..+..+++.|.
T Consensus 105 ~~f~e~l~eYiRl-i~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe 183 (234)
T cd07665 105 FLLAELLADYIRL-LSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYERDFE 183 (234)
T ss_pred HHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999888655 44333 4443333333322222222 11222122344444 44445566677777
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006276 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQME 213 (652)
Q Consensus 167 ~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~ 213 (652)
+.+--.=..|..++..+--+|=..+..|+.++...=++..++++.+-
T Consensus 184 ~is~~ik~El~rFe~er~~Dfk~~v~~fles~ie~qke~ie~We~fl 230 (234)
T cd07665 184 RISATVRKEVIRFEKEKSKDFKNHIIKYLETLLHSQQQLVKYWEAFL 230 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77655556666676666666777777777777777776666665543
No 124
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.97 E-value=1.2e-05 Score=91.69 Aligned_cols=101 Identities=16% Similarity=0.327 Sum_probs=68.8
Q ss_pred ceeeeEEEeccC-CCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcc
Q 006276 292 QTIRQGYLSKRS-SNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (652)
Q Consensus 292 ~~~k~G~L~K~~-~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 370 (652)
.+.-.|||.+-- +...+.|.||||+|. +|.+.|.+.+.+. ..
T Consensus 989 dVEYrGFLtmfed~sgfGaWhRyWc~L~-gg~I~fWk~PdDE------------------------------------kr 1031 (1116)
T KOG3640|consen 989 DVEYRGFLTMFEDGSGFGAWHRYWCALH-GGEIKFWKYPDDE------------------------------------KR 1031 (1116)
T ss_pred ceeeeeeeeeeeccCCCchhhhhhHHhc-CCeeeeecCcchh------------------------------------cc
Confidence 456789986443 223477999999998 4555555555432 12
Q ss_pred ccccceeecccceeeeCCCC----CCCcccEEEEe---------C----Ce-eEEEEeCCHHHHHHHHHHHHHHHHH
Q 006276 371 SAARHTVNLLTSTIKVDADQ----SDLRFCFRIIS---------P----TK-NYTLQAESALDQMDWIEKITGVIAS 429 (652)
Q Consensus 371 ~~~~~~i~l~~~~vk~~~~~----~~rrfcF~I~t---------~----~r-~~~lqA~se~e~~~Wi~ai~~ai~~ 429 (652)
..+.+.|+|..|+-.-.... -.|++.|.|.+ | .| ..+|.|++.+|++.|+.+|+.+...
T Consensus 1032 K~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1032 KVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred cCcceeeehhhhhccccccchhhhccCCceeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 34557789988875532211 24678899983 1 13 5799999999999999999998653
No 125
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=97.97 E-value=0.0045 Score=61.22 Aligned_cols=177 Identities=11% Similarity=0.122 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (652)
Q Consensus 22 ~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~ 101 (652)
-++.|...|..+.|...++......+...-..|...+..++... + ..+..|...|..+..+....+.+... ..
T Consensus 22 y~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E--~----~l~~~le~~g~~~d~~~~~~~~~~~~-~~ 94 (201)
T cd07622 22 YSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIE--K----EMGDGLQKAGHYMDSYAASIDNGLED-EE 94 (201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--h----hHHHHHHHHHHHHHHHHHHHHHHHHh-hh
Confidence 34444455555454444444333333333355667776666532 1 12346666666666666655554433 46
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 102 MLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEA 181 (652)
Q Consensus 102 ~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~ 181 (652)
.+..||..++.- ...++..-|.=+..|-+|+.+.+..... ..+.+.++..++..|....-+....+..++.
T Consensus 95 ~f~e~LkEy~~y-a~slk~vlk~r~~~q~~~e~~~~~L~~k--------~~~l~~~ve~a~~~~e~f~~~~~~E~~rF~~ 165 (201)
T cd07622 95 LIADQLKEYLFF-ADSLRAVCKKHELLQYDLEKAEDALANK--------KQQGEEAVKEAKDELNEFVKKALEDVERFKK 165 (201)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999887655 4455555555556666666655443222 2347778899999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006276 182 KKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (652)
Q Consensus 182 ~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~ 214 (652)
.|..++-+.|.+|...|..||+++.+.+..++.
T Consensus 166 ~K~~dlk~~l~~~A~~qi~~~~~~~~~W~~~~~ 198 (201)
T cd07622 166 QKVRDLKEILISYAKLQIKLAKKGLQTWTNIKE 198 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998887654
No 126
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=97.87 E-value=0.0056 Score=60.46 Aligned_cols=195 Identities=18% Similarity=0.158 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCC-CCCCCccccCchhHHHHHHHHHHHHHHHHH
Q 006276 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG-HNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (652)
Q Consensus 16 v~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~-~~d~~~~~~~g~~L~~f~~~lkel~~~~~~ 94 (652)
...|-.-++.+.=-+..++...++|..++..+..+...|.++|..++.. .....+ -.+|.+|...+...+++....+.
T Consensus 10 ~~~yk~imeqfnP~lrnlv~~G~~Y~kal~a~~~a~~~y~dAl~Kige~A~~s~gS-keLG~~L~~m~~~hr~i~~~le~ 88 (232)
T cd07646 10 ENVYKTIMEQFNPSLRNFIAMGKNYEKALASVTFAAKGYFDALVKMGELASESQGS-KELGDVLFQMAEVHRQIQNQLEE 88 (232)
T ss_pred HHHHHHHHHccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555678888888888888877777789999999887642 111112 23477999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHhccccCC----ChhhHhHHHHHHHH---HHH
Q 006276 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKAS----LLYDQAREKFLSLRKGT----KTDVAAILEEELHS---ARS 163 (652)
Q Consensus 95 l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~----~~YD~al~ky~s~~K~k----~~~~~~E~~~eL~~---~Rk 163 (652)
+...+-..++.||+.=++-|++-.....|+|.... +.|+.+.+-.-.+.|+. .+..-.+-+.|.-+ .|+
T Consensus 89 ~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kky~~e~k~k~~sleK~qseLKKlRrKsqg~k~~~ky~~ke~q~~~~~~~~q 168 (232)
T cd07646 89 MLKSFHNELLTQLEQKVELDSRYLTAALKKYQTEHRSKGESLEKCQAELKKLRKKSQGSKNPQKYSDKELQYIEAISNKQ 168 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877777774433 44555544444444432 22222221212111 121
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 006276 164 AFEQARFSLVTALSNVEAKKRFEFL-EAVSGTMDAHLRYFKQGYELLHQ 211 (652)
Q Consensus 164 ~f~~aslDyv~~l~~l~~~k~~e~l-e~l~~~~~aq~~ff~~g~e~~~~ 211 (652)
.=.++=..--.+=..+++++++-|| +.=+.+......|..+|.+++.+
T Consensus 169 ~ele~f~~~~~k~Al~EErRRycflvdk~C~~~~~~~~yh~k~~~lL~~ 217 (232)
T cd07646 169 GELENYVSDGYKTALTEERRRYCFLVEKQCAVAKNSIAYHSKGKELLTQ 217 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111111222345666666554 66778888888888898888854
No 127
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.85 E-value=3.9e-05 Score=86.28 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=63.0
Q ss_pred ceeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccc
Q 006276 292 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (652)
Q Consensus 292 ~~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 371 (652)
.+.+.|||+|.+... .|++|||.+.++++...+...... .+. ....
T Consensus 376 Dv~~~G~l~k~~~~~--~wk~ry~~l~~~~l~~~~~~~~~~-~~~-------------------------------~~~~ 421 (478)
T PTZ00267 376 DVTHGGYLYKYSSDM--RWKKRYFYIGNGQLRISLSENPEN-DGV-------------------------------APKS 421 (478)
T ss_pred CcccceEEeccCCCc--chhhheEEecCCceEEEecccccc-CCC-------------------------------CCcc
Confidence 457899999986544 499999999877766655432211 000 0000
Q ss_pred cccceeecccceeeeCCCCCCCcccEEEEeC-CeeEEEEeCCHHHHHHHHHHHHHHH
Q 006276 372 AARHTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVI 427 (652)
Q Consensus 372 ~~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~-~r~~~lqA~se~e~~~Wi~ai~~ai 427 (652)
.... .+..++..+......++|||.|.+. .+.++|+|+|++||++||.+|+.++
T Consensus 422 ~~l~--~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 422 VNLE--TVNDVFPVPEVYSQKHPNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred ccHH--HhcccccccHHhcCCCCceEEEEecCCcEEEEecCChHHHHHHHHHHHHHh
Confidence 0000 1111111111123356899999774 5789999999999999999999885
No 128
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.85 E-value=0.0071 Score=59.18 Aligned_cols=176 Identities=15% Similarity=0.108 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHH
Q 006276 18 GLEESAEVLRERSL-KFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLR 96 (652)
Q Consensus 18 ~~E~~le~l~~~l~-kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~ 96 (652)
.+|+.++.++..|. .+.|..++.+.....+...-..|...++.|+...... .++..|.+||.++.........+.
T Consensus 8 ~~e~~~~~~~~~L~~~l~kv~~Ri~k~~~~l~~dl~elG~~fn~ls~~E~~~----~L~~~le~~g~a~D~~~~~~~~l~ 83 (187)
T cd07629 8 DIEAETKKYEQLLHGGMEKVNRRITKRLGDLAEDMADLGGRFNAFSLEEQKS----ELAEALEKVGQAVDSTYLATEALV 83 (187)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555553 4555555444433333333345666777776532211 124589999999999999889999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHH-HHHHHH
Q 006276 97 SQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQAR-FSLVTA 175 (652)
Q Consensus 97 ~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~as-lDyv~~ 175 (652)
..+...+.+||..++.- +..++..-+.-+..+..|+....- + ...+.++.+.|...+ -..-..
T Consensus 84 ~~l~~~f~EpL~E~~~y-~~s~k~vlk~R~~K~~Q~e~l~~~-L--------------~e~~~~~~~~~~~~~~~~~~~e 147 (187)
T cd07629 84 GSLYYNINEPLSESAQF-AGVVRELLKYRKLKHVQYEMTKDS-L--------------LESALVAASDDLVISSTIKQKD 147 (187)
T ss_pred HHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-H--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999998766 555555555555556666543333 2 122334555666664 666678
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006276 176 LSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQME 213 (652)
Q Consensus 176 l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~ 213 (652)
|..++..+..++=+.+.+|...|..|+.++.+.+.+++
T Consensus 148 l~rF~~ek~~dl~~~l~~~a~~~~~~a~~~~~~W~~~~ 185 (187)
T cd07629 148 LPRFQREREADLREILKNYSKYHKDWAKQNLEAWKEAK 185 (187)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88899888999999999999999999999988887654
No 129
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=97.76 E-value=5.5e-05 Score=81.59 Aligned_cols=39 Identities=33% Similarity=0.639 Sum_probs=30.3
Q ss_pred CCceeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCC
Q 006276 290 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQC 330 (652)
Q Consensus 290 ~~~~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~ 330 (652)
.+.+.++|+|+.|.. .+|.|||.||||+..| |||..+.+
T Consensus 314 ~~~pei~GfL~~K~d-gkKsWKk~yf~LR~SG-LYys~K~t 352 (622)
T KOG3751|consen 314 SSPPEIQGFLYLKED-GKKSWKKHYFVLRRSG-LYYSTKGT 352 (622)
T ss_pred CCCccccceeeeccc-ccccceeEEEEEecCc-ceEccCCC
Confidence 457889999999954 4589999999999777 55555544
No 130
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=2.8e-05 Score=84.21 Aligned_cols=112 Identities=25% Similarity=0.436 Sum_probs=69.9
Q ss_pred cCCCceeeeEEEeccC---------CCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCccccccccccccc
Q 006276 288 KGKVQTIRQGYLSKRS---------SNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWL 358 (652)
Q Consensus 288 ~~~~~~~k~G~L~K~~---------~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (652)
.+...+.|+|+|..+- ...++.||.-|-+|+ |++.|+.++.-.. +..+-
T Consensus 501 dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~Lk--G~vLYlqkDey~p----------------~kals---- 558 (774)
T KOG0932|consen 501 DPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLK--GMVLYLQKDEYKP----------------GKALS---- 558 (774)
T ss_pred CCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHh--hheEEeeccccCc----------------ccchh----
Confidence 3445678999996432 234578999999996 5555554432210 00000
Q ss_pred ccccCCCCCCccccccceeecccceeeeCCCCCCCcccEEEEeCC-eeEEEEeCCHHHHHHHHHHHHHHHHHhhcc
Q 006276 359 SSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLLSS 433 (652)
Q Consensus 359 ~~~~~g~~~~~~~~~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~-r~~~lqA~se~e~~~Wi~ai~~ai~~~l~~ 433 (652)
+. .....|.+--+-..+.++...++|.|.|.+.+ |.|.|||.|.+||+.||..|+-+.+ +++.
T Consensus 559 ---------e~--~lknavsvHHALAt~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA-~fSa 622 (774)
T KOG0932|consen 559 ---------ES--DLKNAVSVHHALATPATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAA-AFSA 622 (774)
T ss_pred ---------hh--hhhhhhhhhhhhcCCCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHH-hccC
Confidence 00 00111222222223346777889999999988 8899999999999999999977644 5544
No 131
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.71 E-value=5e-05 Score=84.54 Aligned_cols=97 Identities=16% Similarity=0.413 Sum_probs=65.7
Q ss_pred ceeeeEEEeccCCC---C-CCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCC
Q 006276 292 QTIRQGYLSKRSSN---L-RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH 367 (652)
Q Consensus 292 ~~~k~G~L~K~~~~---~-~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 367 (652)
.+.|+|.+.|+..+ . ++.+|||||-|. +.-|.|.+++.....++++
T Consensus 564 ~v~k~glm~kr~~gr~~~~~~~FKKryf~LT-~~~Ls~~Ksp~~q~~~~Ip----------------------------- 613 (800)
T KOG2059|consen 564 VVLKEGLMIKRAQGRGRFGKKNFKKRYFRLT-TEELSYAKSPGKQPIYTIP----------------------------- 613 (800)
T ss_pred ceecccceEeccccccchhhhhhhheEEEec-cceeEEecCCccCccccee-----------------------------
Confidence 34555666666532 2 367899999998 5667777776542211111
Q ss_pred CccccccceeecccceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006276 368 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (652)
Q Consensus 368 ~~~~~~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai 427 (652)
+.-+.+.-+++...-+.++||+|+..+|+.+|||.+-.|..+|+.+|..+.
T Consensus 614 ---------l~nI~avEklee~sF~~knv~qVV~~drtly~Q~~n~vEandWldaL~kvs 664 (800)
T KOG2059|consen 614 ---------LSNIRAVEKLEEKSFKMKNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVS 664 (800)
T ss_pred ---------HHHHHHHHHhhhhccCCCceEEEEecCcceeEecCCchHHHHHHHHHHHHh
Confidence 111122223333445678999999999999999999999999999998874
No 132
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.71 E-value=0.013 Score=58.98 Aligned_cols=180 Identities=13% Similarity=0.155 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVE 100 (652)
Q Consensus 21 ~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~ 100 (652)
+.++.|...|..+.|...+++.....+......|+..+..++... .+ .+..|..|+.++..+......+....+
T Consensus 58 ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE-~~-----l~~~L~~~a~~~~~~s~~l~~l~~~~~ 131 (240)
T cd07667 58 DYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLE-GE-----LAEPLEGVSACIGNCSTALEELTEDMT 131 (240)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HH-----HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444444444333222222233444444433311 11 134788888888888888888887777
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006276 101 HMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVE 180 (652)
Q Consensus 101 ~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~ 180 (652)
..++.+|..++-. +..+|..=|.=|..|.+|+.+++-. .+++ +.++..+.++.++...+.-..-+....+..++
T Consensus 132 ~~yl~~Lke~~~Y-~~slk~vlK~RdqkQ~d~E~l~E~l-~~rr----e~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe 205 (240)
T cd07667 132 EDFLPVLREYILY-SESMKNVLKKRDQVQAEYEAKLEAV-ALRK----EERPKVPTDVEKCQDRVECFNADLKADMERWQ 205 (240)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999988766 6777777778888999999877664 3322 33445566677788888777888889999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006276 181 AKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (652)
Q Consensus 181 ~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l 212 (652)
..|..+|-..+.+|...|..||+.+.+.++.+
T Consensus 206 ~~K~~e~k~~l~~~Ad~~i~fy~~~~~~We~~ 237 (240)
T cd07667 206 NNKRQDFRQLLMGMADKNIQYYEKCLTAWESI 237 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887654
No 133
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.69 E-value=0.00042 Score=60.03 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=36.3
Q ss_pred CCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006276 388 ADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (652)
Q Consensus 388 ~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai 427 (652)
+|+..-+++|.|.++.+++.+||+|+++..+||..|+.++
T Consensus 59 ~D~~~~kNafki~t~~~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 59 KDRENAKKVLKLLIFPESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred CCCcCcCceEEEEeCCccEEEEeCCHHHHHHHHHHHHHHh
Confidence 4555668999999999999999999999999999999986
No 134
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=97.67 E-value=0.018 Score=55.92 Aligned_cols=198 Identities=13% Similarity=0.213 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHH
Q 006276 12 FRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTY 91 (652)
Q Consensus 12 FRasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~ 91 (652)
.|.+...|-.-++.+.=-+.+++-..+.|..++..+..+.+.|-++|..+|..-........+|.+|...++..+.|..-
T Consensus 4 ~r~t~~~Yk~imeqFNP~lrnlv~lGk~Y~kA~~a~t~aa~~Yf~Al~KiGe~A~~s~~s~~LG~vLmqisev~r~i~~~ 83 (215)
T cd07644 4 YRSTISIYKSIMEQFNPALENLVYLGNNYLRAFHALSEAAEVYFSAIAKIGEQALQSLTSQSLGEILIQMSETQRKLSAD 83 (215)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888999999999999888877777788999999887642111111122367999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHH
Q 006276 92 KEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKAS----LLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQ 167 (652)
Q Consensus 92 ~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~----~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~ 167 (652)
.+..+...-.-++.||++-++-|.+-+....|+|+... ..|+.+......+.|+.+.. ..|..+-+...+..- +
T Consensus 84 le~~lk~FH~ell~~LEkk~elD~kyi~~s~KkYq~E~r~k~dsleK~~selkk~rrk~qkn-~~e~kE~~~~lq~~~-~ 161 (215)
T cd07644 84 LEVVFQTFHVDLLQHMDKNTKLDMQFIEDSRRVYELEYRHRAANLEKCMSELWRMERQRDRN-VREMKENVNRLRQSM-Q 161 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCC-chhhHHHHHHHHHHH-H
Confidence 89888888899999999999999998888989888765 44666654333344333211 123332223332221 1
Q ss_pred HHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 006276 168 ARFSLVTALSNVEAKKRFEFL-EAVSGTMDAHLRYFKQGYELLHQ 211 (652)
Q Consensus 168 aslDyv~~l~~l~~~k~~e~l-e~l~~~~~aq~~ff~~g~e~~~~ 211 (652)
+-++=-.+=..++.++++-|| +.-+.+......|.++|.+++..
T Consensus 162 ~f~~~~~k~Al~eErRRy~Flvek~c~~~k~~~~yh~ka~~ll~~ 206 (215)
T cd07644 162 AFLKESQRAAELEEKRRYRFLAEKHYLLNNTFLQFQSRARGMLQT 206 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112222344456777777776 45566677777788888888754
No 135
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.67 E-value=0.016 Score=57.11 Aligned_cols=180 Identities=17% Similarity=0.113 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 24 EVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHML 103 (652)
Q Consensus 24 e~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i 103 (652)
+.++..|+++.+.+..++..-.++-.+...|+.++..+++....+.. . .+..|..+++....+.........+....+
T Consensus 14 ~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~-~-l~~~l~~lse~~e~i~~~~~~~a~~d~~~L 91 (198)
T cd07630 14 TKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASVV-A-LNRLCTKLSEALEEAKENIEVVAGNNENTL 91 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444444444444444443222222335567777777664222210 1 134788899888888888888888888888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006276 104 NDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKK 183 (652)
Q Consensus 104 ~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k 183 (652)
..||..++.. |..+|+.=.+=-++-..|+.+-. .+.|.+ +.....++....+++..|...+--.=..|..++.++
T Consensus 92 g~~L~~Y~r~-i~a~K~~l~~R~~~~~~~~~a~k---~l~Kar-~~k~~~ae~~~~~a~~~fe~iS~~~k~EL~rF~~~R 166 (198)
T cd07630 92 GLTLDLYSRY-SESEKDMLFRRTCKLIEFENASK---ALEKAK-PQKKEQAEEAKKKAETEFEEISSLAKKELERFHRQR 166 (198)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHhH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887665 55544332222223333433322 233333 223334666777888899888877777778887777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006276 184 RFEFLEAVSGTMDAHLRYFKQGYELLH 210 (652)
Q Consensus 184 ~~e~le~l~~~~~aq~~ff~~g~e~~~ 210 (652)
-.+|=..|+.|+..+...-+..++++.
T Consensus 167 v~~fk~~l~~~~E~~i~~ak~~~~~~~ 193 (198)
T cd07630 167 VLELQSALVCYAESQIKNAKEAAAVLT 193 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 767777777777777777766666654
No 136
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.66 E-value=0.035 Score=55.90 Aligned_cols=191 Identities=15% Similarity=0.111 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHH
Q 006276 10 PMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIG 89 (652)
Q Consensus 10 P~FRasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~ 89 (652)
-.||..|..|---...+...+++++|.=+.+..+. ..|..++..++.....+ .++.++.++|+....+.
T Consensus 21 ~~~rp~vk~~y~~~~~l~~~~~~lvk~rr~La~~~-------~dfg~~l~~Ls~~E~~~----~L~~a~~kLg~v~~~v~ 89 (230)
T cd07625 21 AEFRPLVKSIYLTAQDLQEKLLRVSKARKQLSLEE-------ADFGQKLIQLSVEETHH----GLGNLYEKFGKVLTAVG 89 (230)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhcccc----hHHHHHHHHHHHHHHHh
Confidence 36999999999888888888888888877665442 45788888876532111 13568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHH----HHHHHHHHHHHHHHHHhccc--cCCChhhHhHHHHHHHH
Q 006276 90 TYKEVLRSQVEHMLNDRLLQYVNIDLHEVK---EARK----CFDKASLLYDQAREKFLSLR--KGTKTDVAAILEEELHS 160 (652)
Q Consensus 90 ~~~~~l~~~~~~~i~~pL~~f~~~di~~~k---e~Rk----~Fek~~~~YD~al~ky~s~~--K~k~~~~~~E~~~eL~~ 160 (652)
..+..-.+....++.+||..++.. +..+| ..|. .+-.++....+-...-..++ .+-.|+++.|+..+|.+
T Consensus 90 dl~~~QA~~d~~tl~d~L~~~~~~-~~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~e 168 (230)
T cd07625 90 DIDSIQATVDMATLYDGLEWISRD-AYVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEE 168 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHH
Confidence 998888888889999999988665 44333 2222 22222222222111111221 11135555555555554
Q ss_pred -------HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006276 161 -------ARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (652)
Q Consensus 161 -------~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l 212 (652)
+...|...+-.....+..+...+.-+|-..+..|+..+..+=++-..+++.+
T Consensus 169 A~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk~l~~lE~~ 227 (230)
T cd07625 169 ATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYERKKLSLLERI 227 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666666666666665555666666666666666665555555443
No 137
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.62 E-value=0.00071 Score=58.71 Aligned_cols=34 Identities=21% Similarity=0.500 Sum_probs=31.0
Q ss_pred cccEEEEeCC---eeEEEEeCCHHHHHHHHHHHHHHH
Q 006276 394 RFCFRIISPT---KNYTLQAESALDQMDWIEKITGVI 427 (652)
Q Consensus 394 rfcF~I~t~~---r~~~lqA~se~e~~~Wi~ai~~ai 427 (652)
+++|.|++.+ +.|.|||.|+++++.||.+|+.+|
T Consensus 59 ~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 59 PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 7999998764 689999999999999999999886
No 138
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.56 E-value=0.001 Score=58.44 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=62.9
Q ss_pred eeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccc
Q 006276 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (652)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (652)
.+.+|=|.+.+... +.=+.|+|+|.++.++++.++-.+ .....
T Consensus 2 li~~Gel~~~s~~~-g~~q~R~~FLFD~~LI~CKkd~~r------------------------------------~~~~~ 44 (109)
T cd01224 2 LFLQGEATRQKQNK-GWNSSRVLFLFDHQMVLCKKDLIR------------------------------------RDHLY 44 (109)
T ss_pred ceEeeeEEEEeccc-CCcccEEEEEecceEEEEeccccc------------------------------------CCcEE
Confidence 35788888775321 122468899985555554332111 01123
Q ss_pred ccceeecccceeeeCCCCCCC------cccEEEEeCC--eeEEEEeCCHHHHHHHHHHHHH
Q 006276 373 ARHTVNLLTSTIKVDADQSDL------RFCFRIISPT--KNYTLQAESALDQMDWIEKITG 425 (652)
Q Consensus 373 ~~~~i~l~~~~vk~~~~~~~r------rfcF~I~t~~--r~~~lqA~se~e~~~Wi~ai~~ 425 (652)
-.+.|++..+.|...+|..+. ++.|.|+..+ ..|.|.|.|+++...||+||..
T Consensus 45 yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 45 YKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 346677777777655444333 6899999876 5699999999999999999854
No 139
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.56 E-value=0.00034 Score=61.59 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=30.5
Q ss_pred CCcccEEEEeCC--eeEEEEeCCHHHHHHHHHHHHH
Q 006276 392 DLRFCFRIISPT--KNYTLQAESALDQMDWIEKITG 425 (652)
Q Consensus 392 ~rrfcF~I~t~~--r~~~lqA~se~e~~~Wi~ai~~ 425 (652)
++.+||-|.+.. .+.+|..|+..|+..|..||+.
T Consensus 72 ~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 72 QRDNCFLIRTGTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence 567999999987 4699999999999999999975
No 140
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=97.55 E-value=0.0092 Score=59.42 Aligned_cols=175 Identities=17% Similarity=0.221 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCC---CCCCCccccCchhHHHHHHHHHHHHHH
Q 006276 18 GLEESAEVLRER---SLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG---HNDPISVAFGGPVMTKFTIALREIGTY 91 (652)
Q Consensus 18 ~~E~~le~l~~~---l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~---~~d~~~~~~~g~~L~~f~~~lkel~~~ 91 (652)
+||.|++.|++. +..+++..+.+..-+-.+..++.++.+++..++.- .-.+.. .-++..+-+...
T Consensus 126 ElEaQie~Lrd~~rkY~~vl~lar~fS~~l~qmv~tq~~L~dsFadLs~K~~elq~eft---------~nseTqr~l~kn 196 (341)
T KOG3876|consen 126 ELEAQIEVLRDTKRKYESVLALARAFSHHLTQMVETQHALGDSFADLSQKSPELQEEFT---------YNSETQRLLGKN 196 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHhC---------cCHHHHHHHhhh
Confidence 567777777664 44455555555444444444556666666555421 011111 113444445443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCC--C--hhhHhHHHHHHHHHHHHHHH
Q 006276 92 KEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT--K--TDVAAILEEELHSARSAFEQ 167 (652)
Q Consensus 92 ~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k--~--~~~~~E~~~eL~~~Rk~f~~ 167 (652)
-+.|+ +.-+.++..+..+++..|..---.-++||.++.+||+...-...+.-.- . ...+..+.....+.|..|.+
T Consensus 197 getLl-~alnfFIsSvnTl~nkTi~DTL~Ti~qyEsARiEyDayR~Dle~~~l~P~~~~t~~~le~aq~~~q~hkekYeK 275 (341)
T KOG3876|consen 197 GETLL-GALNFFISSVNTLVNKTIEDTLMTIKQYESARIEYDAYRTDLEELTLGPRDALTKNLLEGAQEKFQAHKEKYEK 275 (341)
T ss_pred HHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHhcCCccccccccccHHHHHHHHHHHHHHHH
Confidence 33333 4455667777777777777766777788888888888887776553221 1 11234444556677888999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 006276 168 ARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYF 202 (652)
Q Consensus 168 aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff 202 (652)
..-|...+|.-++..+--.+-.+|..|..|...||
T Consensus 276 lrnDvaiKmkfLeENrIkVmh~QL~llhnAiaAYf 310 (341)
T KOG3876|consen 276 LRNDVAIKMKFLEENRIKVMHKQLELLHNAIAAYF 310 (341)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999988876543333344444444444444
No 141
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=97.53 E-value=0.038 Score=54.65 Aligned_cols=195 Identities=15% Similarity=0.141 Sum_probs=116.7
Q ss_pred CccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHH
Q 006276 4 NKLDDS-PMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFT 82 (652)
Q Consensus 4 ~~~~DS-P~FRasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~ 82 (652)
.++.|+ |+|-.-..+ ++.+...|+++...+.+++..-.++-.+...|+.++..++.. +.... ...|.+++
T Consensus 16 ~~~kd~D~wFe~ek~~----l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl~~L~~~--e~t~L---~~~l~~la 86 (218)
T cd07662 16 SGVKDVDDFFEHERTF----LLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSLYTLGTQ--DSTDI---CKFFLKVS 86 (218)
T ss_pred hcccchhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cchhH---HHHHHHHH
Confidence 345553 555444433 344556667777777777666555544556778888777764 22222 34677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-hhhHhHHHHHHHHH
Q 006276 83 IALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTK-TDVAAILEEELHSA 161 (652)
Q Consensus 83 ~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~-~~~~~E~~~eL~~~ 161 (652)
+....+...+..+...-...+..-|.-++.. +..+|+.=-+=-++-..|+.|-.. +.|.+. ...+.+++..+.++
T Consensus 87 ev~eki~~l~~~~A~~e~l~L~e~L~~Y~r~-~~A~Kdll~rR~r~l~~~enA~k~---L~KaR~~~kev~~aE~~~~~a 162 (218)
T cd07662 87 ELFDKTRKIEARVAADEDLKLSDLLKYYLRE-SQAAKDLLYRRSRSLVDYENANKA---LDKARAKNKDVLQAETTQQLC 162 (218)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHcCChHHHHHHHHHHH
Confidence 7776666666666555445555554444333 444333221112222333333222 222211 13356678889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 162 RSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (652)
Q Consensus 162 Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~ 211 (652)
+..|.+.|--.=..|..++.++-.+|=..|+.|++.+....+..++++.+
T Consensus 163 ~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~~ 212 (218)
T cd07662 163 CQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQS 212 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999777788888888877788888888888777777777776654
No 142
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=97.53 E-value=0.046 Score=54.56 Aligned_cols=180 Identities=16% Similarity=0.130 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHM 102 (652)
Q Consensus 23 le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~ 102 (652)
++.++..|+++.+.+.+++..-.++-.+...|+.++..+++.. +. ..+..|.++++....+.........+..-.
T Consensus 33 l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~E--~t---~L~~~ls~lae~~ek~~~l~~r~A~~d~l~ 107 (219)
T cd07621 33 LVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLATSE--PT---PLDKFLLKVAETFEKLRKLEGRVASDEDLK 107 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cc---hHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 3444455555555555555443333334466788888887742 21 123467777777766666655555555555
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-ChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 103 LNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT-KTDVAAILEEELHSARSAFEQARFSLVTALSNVEA 181 (652)
Q Consensus 103 i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k-~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~ 181 (652)
+..+|.-++.. ..-.|..|......|-..-+-...+.|++ .+..+.+++....++++.|.+.+--.=..|..++.
T Consensus 108 L~e~L~~Y~r~----~~A~K~~l~rR~ral~~~q~A~k~L~KaR~k~~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~ 183 (219)
T cd07621 108 LSDTLRYYMRD----TQAAKDLLYRRLRCLANYENANKNLEKARAKNKDVHAAEAAQQEACEKFESMSESAKQELLDFKT 183 (219)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55665555443 44444455544443332222222233332 24556778888999999999999777788888888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 182 KKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (652)
Q Consensus 182 ~k~~e~le~l~~~~~aq~~ff~~g~e~~~~ 211 (652)
++-.+|=..++.|...+...-+..++++.+
T Consensus 184 ~Rv~~fk~~lve~aE~~ik~Ak~~~~~l~~ 213 (219)
T cd07621 184 RRVAAFRKNLVELAELEIKHAKAQIQLLKN 213 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887788888888888887777776666643
No 143
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=97.49 E-value=0.059 Score=53.64 Aligned_cols=196 Identities=15% Similarity=0.159 Sum_probs=112.6
Q ss_pred CCccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHH
Q 006276 3 FNKLDDS-PMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKF 81 (652)
Q Consensus 3 ~~~~~DS-P~FRasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f 81 (652)
+.+..|+ |+|-.... .|+.++..|+++.+.+.+++..-.++-.+...|+.+|..++ ..++.. .+..|.++
T Consensus 15 ~~~~ke~D~~Fe~~k~----~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l~--~ee~t~---L~kals~l 85 (218)
T cd07663 15 FSGVKEVDEFFEQEKT----FLVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSVA--AEEPTV---IKKYLLKV 85 (218)
T ss_pred HhccccchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccch---HHHHHHHH
Confidence 4566664 55543322 23444455555555555555443333323345666666552 222211 13467777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-ChhhHhHHHHHHHH
Q 006276 82 TIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT-KTDVAAILEEELHS 160 (652)
Q Consensus 82 ~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k-~~~~~~E~~~eL~~ 160 (652)
++....+...+.....+....+.++|..++.. +..+|+.=-+=-++-..|+.+-.. +.|.+ +...+.+++..+.+
T Consensus 86 ae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r~-~~A~K~ll~rR~ral~~~e~A~~~---L~KaR~k~kev~~aE~~~~e 161 (218)
T cd07663 86 AELFEKLRKVEDRVASDQDLKLTELLRYYMLN-IEAAKDLLYRRARALADYENSNKA---LDKARLKSKDVKQAEAHQQE 161 (218)
T ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHH
Confidence 77777777766666666666666666666543 443332211111222333333221 11111 23335667888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 161 ARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (652)
Q Consensus 161 ~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~ 211 (652)
+.+.|.+.|--.=..|..++.++-.+|=..++.|+..+...-+..++++..
T Consensus 162 a~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~~lve~~E~~ik~ak~~~~~~~~ 212 (218)
T cd07663 162 CCQKFEKLSESAKQELISFKRRRVAAFRKNLIEMTELEIKHAKNNVSLLQS 212 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999777788888888877788888888888777777776666643
No 144
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=97.47 E-value=0.081 Score=54.22 Aligned_cols=160 Identities=13% Similarity=0.119 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCC------CCCccccCchhHHHHHHHHHHHHHHHHH
Q 006276 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHN------DPISVAFGGPVMTKFTIALREIGTYKEV 94 (652)
Q Consensus 21 ~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~------d~~~~~~~g~~L~~f~~~lkel~~~~~~ 94 (652)
++++.|..+++.=++.|+.+..-+.+--..+..++..|..+...+. +....+. ..++..+-.....++..+..
T Consensus 5 d~~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~-~~aw~~i~~e~~~~a~~H~~ 83 (251)
T cd07653 5 DQFDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSS-VKAFRSILNEVNDIAGQHEL 83 (251)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccH-HHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544444333445677888866543211 1111111 13566666667777788999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH---------------------HHHHHHHHHHHHHHHHHHHHHHHhccccCC--ChhhH
Q 006276 95 LRSQVEHMLNDRLLQYVNIDLH---------------------EVKEARKCFDKASLLYDQAREKFLSLRKGT--KTDVA 151 (652)
Q Consensus 95 l~~~~~~~i~~pL~~f~~~di~---------------------~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k--~~~~~ 151 (652)
+...+...+..||..|+++.-+ .+..+|+.|++...+.+.+..++....... .+..+
T Consensus 84 ~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~ 163 (251)
T cd07653 84 IAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADV 163 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhH
Confidence 9999999999999888764333 344555555555555555555554432211 11112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 152 AILEEELHSARSAFEQARFSLVTALSNVEA 181 (652)
Q Consensus 152 ~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~ 181 (652)
+-+...+......+..+-=+|...|..+..
T Consensus 164 eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~ 193 (251)
T cd07653 164 EKAKANANLKTQAAEEAKNEYAAQLQKFNK 193 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334444444445555555555555543
No 145
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=97.38 E-value=0.11 Score=50.97 Aligned_cols=198 Identities=13% Similarity=0.128 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCC-CCCCCccccCchhHHHHHHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG-HNDPISVAFGGPVMTKFTIALREIGTY 91 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~-~~d~~~~~~~g~~L~~f~~~lkel~~~ 91 (652)
|-+..-|-.-++.+.=-|.+|+-..+.|..++..+..+.+.|.++|..+|.. .....+ -.+|.+|..+++..+++...
T Consensus 5 ~lt~~~ykni~eqfnP~lrnLv~lGk~Y~KA~~a~~~A~~~y~dal~Kige~A~~s~~S-keLG~~L~qi~ev~r~i~~~ 83 (226)
T cd07645 5 KLTESTYKNVMEQFNPGLRNLINLGKNYEKAVNAMVLAGKAYYDGVAKIGEIAAVSPVS-KELGHVLMEISDVHKKLNDS 83 (226)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666777788899999988888887777788999999887642 122222 22467899999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHhccccCC----Chhh--HhHHHH-HHHH
Q 006276 92 KEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASL----LYDQAREKFLSLRKGT----KTDV--AAILEE-ELHS 160 (652)
Q Consensus 92 ~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~----~YD~al~ky~s~~K~k----~~~~--~~E~~~-eL~~ 160 (652)
.+.++...-.-++.||++-++-|++-+....|+|..... .+|.+.+-.-.+.|+. .+.+ ..|.+. +...
T Consensus 84 le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kkyq~E~k~k~dsLeK~~seLKK~RRKsqg~kn~~kye~Ke~~~~e~~~ 163 (226)
T cd07645 84 LEENFKKFHREIIAELERKTDLDVKYMTATLKRYQTEHKNKLDSLEKSQADLKKIRRKSQGRRNASKYEHKENEYLETVT 163 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence 888888888999999999999999988888888876653 4555544443444432 2221 111100 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 161 ARSAFEQARFSLVTALSNVEAKKRFEF-LEAVSGTMDAHLRYFKQGYELLHQ 211 (652)
Q Consensus 161 ~Rk~f~~aslDyv~~l~~l~~~k~~e~-le~l~~~~~aq~~ff~~g~e~~~~ 211 (652)
.|+.=.++=..--.+=..+++++++-| ++-=+.+......|+.++.+++.+
T Consensus 164 ~~q~el~~f~~~~~k~AL~EErRRycFlvdkhC~~~~~~~~yh~k~~~lL~~ 215 (226)
T cd07645 164 SRQSDIQKFIADGCREALLEEKRRFCFLVDKHCSFSNHIHYFHQQAAELLNS 215 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111111111122233556666655 467788888999999999999864
No 146
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=97.35 E-value=0.00019 Score=62.03 Aligned_cols=96 Identities=18% Similarity=0.376 Sum_probs=61.8
Q ss_pred eeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccc
Q 006276 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (652)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (652)
++.+||+.|-++++...|++|||-|..|.+=+|..+.... ..| .
T Consensus 3 cIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~------------------~eL------------------i 46 (116)
T cd01240 3 CIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANK------------------PEL------------------I 46 (116)
T ss_pred eEEeeehhhhCCHHHHHHHHHHheeCcceeeecccccccC------------------CcE------------------E
Confidence 5789999999988889999999999866554432111100 000 0
Q ss_pred ccceeecccceeeeCCCCCCCcccEEEEeCC-eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006276 373 ARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA 428 (652)
Q Consensus 373 ~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~-r~~~lqA~se~e~~~Wi~ai~~ai~ 428 (652)
....|. .|.++-....-..|..|...+ +.++|+++++.+..+|...|+++-.
T Consensus 47 ~M~~i~----~V~~e~~~iK~~~CI~ik~k~~~k~vlt~~d~i~l~qW~~elr~a~r 99 (116)
T cd01240 47 TMDQIE----DVSVEFQQIKEENCILLKIRDEKKIVLTNSDEIELKQWKKELRDAHR 99 (116)
T ss_pred Eeehhh----hcchhheeeccCceEEEEEcCCceEEEecCCcHHHHHHHHHHHHHHH
Confidence 000000 011111111235899999865 6699999999999999999988854
No 147
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.27 E-value=0.0015 Score=55.10 Aligned_cols=86 Identities=19% Similarity=0.297 Sum_probs=58.2
Q ss_pred eeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccccc
Q 006276 294 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (652)
Q Consensus 294 ~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 373 (652)
++.|.+.|+.+ + .++||-++|.+...|+|......+..
T Consensus 2 l~~g~v~Kr~g-l--f~kkR~LiLTd~PrL~yvdp~~~~~K--------------------------------------- 39 (89)
T cd01262 2 LKIGAVKKRKG-L--FAKKRQLILTNGPRLIYVDPVKKVVK--------------------------------------- 39 (89)
T ss_pred ceeeeeeehhc-c--ccceeeEEEecCceEEEEcCCcCeEE---------------------------------------
Confidence 57899999965 3 57999999998888888754433211
Q ss_pred cceeecccceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006276 374 RHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 374 ~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
+.|.+.....++... ....|.|.||+|+|+|. +.+.....|+.+|+.+
T Consensus 40 -geIp~s~~~l~v~~~---~~~~F~I~Tp~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 40 -GEIPWSDVELRVEVK---NSSHFFVHTPNKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred -eEecccccceEEEEe---cCccEEEECCCceEEEE-CCCCCHHHHHHHHHHH
Confidence 222222211122111 13569999999999995 6678899999999875
No 148
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=97.26 E-value=0.0037 Score=70.74 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=32.9
Q ss_pred CCcccEEEEeC-CeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006276 392 DLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIA 428 (652)
Q Consensus 392 ~rrfcF~I~t~-~r~~~lqA~se~e~~~Wi~ai~~ai~ 428 (652)
+..|.|-|... +|.+.|||.+++||+.||.+||.++.
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 453 NAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 46899999875 58999999999999999999998863
No 149
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=97.25 E-value=0.1 Score=51.78 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCC-CCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 29 RSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG-HNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRL 107 (652)
Q Consensus 29 ~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~-~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL 107 (652)
-++.++..+++|...+.....+...|.+++..++.. .......-..|.+|.++..-++.|+.....+.+.+.+.++.||
T Consensus 23 ~~~d~v~ka~K~~saL~a~~~A~~~f~Da~qKvad~A~~s~GaSkElG~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pL 102 (231)
T cd07643 23 LWEDFVSKATKLHSQLRATIVATSAFLDAFQKIADAATNTRGATKEIGSALTRMCMRHKSIETKLKQFTSALMDCLVNPL 102 (231)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 366777777777777777777788999999877641 1112222234779999999999999999999999999999999
Q ss_pred HHHHHhhhHHH----HHHHHHHHHHHHHHHHHHH
Q 006276 108 LQYVNIDLHEV----KEARKCFDKASLLYDQARE 137 (652)
Q Consensus 108 ~~f~~~di~~~----ke~Rk~Fek~~~~YD~al~ 137 (652)
++=++++.+.+ |+..|.|.+++.+.-.+..
T Consensus 103 e~k~E~wkk~~~~ldKd~~k~~kk~R~elKk~~~ 136 (231)
T cd07643 103 QEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSS 136 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999988877 6777778888877664444
No 150
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.14 E-value=0.26 Score=50.07 Aligned_cols=180 Identities=11% Similarity=0.139 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVE 100 (652)
Q Consensus 21 ~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~ 100 (652)
+.++.|...|..+-|...+++....++......|.-.+...++...+ . +..|..|+..+..+.........++.
T Consensus 61 ey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~---L---~~~L~~~a~~~d~~~~~~~~~~~~l~ 134 (243)
T cd07666 61 EYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEE---L---ADSLKGMASCIDRCCKATDKRMKGLS 134 (243)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchh---h---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444433333322223344444444432212 1 34788888888877777777666777
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006276 101 HMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVE 180 (652)
Q Consensus 101 ~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~ 180 (652)
..+..||..++-- +..+|..=+.=+..|.+|+....-....+ ++. .++..++...-..=..++-++=..+..++
T Consensus 135 ~~f~~~Lkeyv~y-~~slK~vlk~R~~~Q~~le~k~e~l~k~~----~dr-~~~~~ev~~~e~kve~a~~~~k~e~~Rf~ 208 (243)
T cd07666 135 EQLLPVIHEYVLY-SETLMGVIKRRDQIQAELDSKVEALANKK----ADR-DLLKEEIEKLEDKVECANNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888887544 33333222222688888887766655432 222 23333444444444444555557778888
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006276 181 AKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (652)
Q Consensus 181 ~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l 212 (652)
..+.-+|-..+++|+..|..+++++...++.+
T Consensus 209 ~~k~~D~k~~~~~yae~~i~~~~~~~~~We~f 240 (243)
T cd07666 209 QNMQTDLRSAFTDMAENNISYYEECLATWESF 240 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999998876553
No 151
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.13 E-value=0.0053 Score=55.89 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=32.4
Q ss_pred CcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006276 393 LRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (652)
Q Consensus 393 rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~ 428 (652)
..++|.|.+++|++-|-|+|.++.+-|+.+|+--++
T Consensus 87 ~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 87 HNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred cceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 468999999999999999999999999999987653
No 152
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=97.10 E-value=0.00047 Score=76.47 Aligned_cols=98 Identities=23% Similarity=0.506 Sum_probs=67.9
Q ss_pred CceeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcc
Q 006276 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (652)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 370 (652)
.-..|.||+.+.++.. +.|+||||+++ +|...||+++..+ +..
T Consensus 247 e~~ekSgy~~~~~s~~-k~lkrr~~v~k-~gqi~~y~~~~~~-----------------------------------~~~ 289 (936)
T KOG0248|consen 247 ETMEKSGYWTQLTSRI-KSLKRRYVVFK-NGQISFYRKHNNR-----------------------------------DEE 289 (936)
T ss_pred chhhcccchhcchHHH-HHHHhHheeec-cceEEEEEcCCCc-----------------------------------ccc
Confidence 4567899999886444 89999999999 5666666665432 011
Q ss_pred ccccceeecccceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHHHh
Q 006276 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASL 430 (652)
Q Consensus 371 ~~~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~~~ 430 (652)
+...+++..-+.- ....-.+.|++++...+|+|.++|+--..+|+..|+.+|.-.
T Consensus 290 --p~s~~d~~s~~~~---~~~~~s~~fqli~~t~~~~~~~~s~~lt~dw~~iL~~~iKv~ 344 (936)
T KOG0248|consen 290 --PASKIDIRSVTKL---EQQGAAYAFQLITSTDKMNFMTESERTTHDWVTILSAAIKAT 344 (936)
T ss_pred --ccCccccccccee---eccchhHHhhhhhhceeEEEeccChhhhhhhHHHHHHHHHHH
Confidence 1122333222221 122335789999999999999999999999999999998633
No 153
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.04 E-value=0.005 Score=55.70 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=26.7
Q ss_pred CCcccEEEEe------CCeeEEEEeCCHHHHHHHHHHH
Q 006276 392 DLRFCFRIIS------PTKNYTLQAESALDQMDWIEKI 423 (652)
Q Consensus 392 ~rrfcF~I~t------~~r~~~lqA~se~e~~~Wi~ai 423 (652)
..++.|.|+. ..+.+.|+|+|+.|+..||+||
T Consensus 81 ~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al 118 (125)
T cd01221 81 GRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSAL 118 (125)
T ss_pred CCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhc
Confidence 3478999973 2356999999999999999987
No 154
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=97.03 E-value=0.38 Score=49.66 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 24 EVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHML 103 (652)
Q Consensus 24 e~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i 103 (652)
+.|..+++.-++.|+.+..-+.+-...++.++..|..++....+...+....+++..+-.....+...+..+..++. .+
T Consensus 8 ~~L~~r~k~g~~~~~el~~f~keRa~IEe~Yak~L~kLakk~~~~~~~gt~~~~w~~i~~~~e~~a~~H~~l~~~L~-~~ 86 (261)
T cd07648 8 DVLYHNMKHGQIAVKELADFLRERATIEETYSKALNKLAKQASNSSQLGTFAPLWLVLRVSTEKLSELHLQLVQKLQ-EL 86 (261)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 45556666666666665554444444567788888776642222111111123566666667777778888888886 46
Q ss_pred HHHHHHHHHhhhHHHHHHH-----------------HHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHH
Q 006276 104 NDRLLQYVNIDLHEVKEAR-----------------KCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFE 166 (652)
Q Consensus 104 ~~pL~~f~~~di~~~ke~R-----------------k~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~ 166 (652)
+.+|..|+.+.-+.-|..+ ...+++..+|+++-..+-.+.+... ...++..++....
T Consensus 87 ~~~l~~~~~~~~k~rK~~k~~~~~~~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~~------s~k~~eK~~~K~~ 160 (261)
T cd07648 87 IKDVQKYGEEQHKKHKKVKEEESGTAEAVQAIQTTTAALQKAKEAYHARCLELERLRRENA------SPKEIEKAEAKLK 160 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CHHHHHHHHHHHH
Confidence 7888888766444433332 2224555555555444433322211 1223344444445
Q ss_pred HHHHHHHHHHHHHhh
Q 006276 167 QARFSLVTALSNVEA 181 (652)
Q Consensus 167 ~aslDyv~~l~~l~~ 181 (652)
.+.-||-..+..++.
T Consensus 161 ka~~~Y~~~v~~~~~ 175 (261)
T cd07648 161 KAQDEYKALVEKYNN 175 (261)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555556555555543
No 155
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=97.01 E-value=0.13 Score=53.16 Aligned_cols=92 Identities=9% Similarity=0.108 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 24 EVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHML 103 (652)
Q Consensus 24 e~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i 103 (652)
+.|-..++.=...|+.+..-+.+-...++.++..|..++....+...+....+++..+-.....+...+..|...+.. +
T Consensus 8 ~~l~~r~k~g~~~~kel~~flkeRa~IEe~Yak~L~klak~~~~~~e~Gtl~~~w~~~~~~~E~~a~~H~~l~~~L~~-~ 86 (261)
T cd07674 8 DVLYHNMKHGQISTKELADFVRERAAIEETYSKSMSKLSKMASNGSPLGTFAPMWEVFRVSSDKLALCHLELMRKLND-L 86 (261)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 345556666666666665555554455688888888887544333333222446777777888888888888888874 4
Q ss_pred HHHHHHHHHhhhH
Q 006276 104 NDRLLQYVNIDLH 116 (652)
Q Consensus 104 ~~pL~~f~~~di~ 116 (652)
+.+|..|.++.++
T Consensus 87 ~~~i~~~~~~~~k 99 (261)
T cd07674 87 IKDINRYGDEQVK 99 (261)
T ss_pred HHHHHHHHHHHHH
Confidence 4788888766443
No 156
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=97.01 E-value=0.24 Score=47.23 Aligned_cols=181 Identities=12% Similarity=0.175 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCC-CCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 30 SLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG-HNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLL 108 (652)
Q Consensus 30 l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~-~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~ 108 (652)
=..+++.+.-++..-.+.......|++--..+|.. ...+.. ++..-..||.+.+.++.-++.|+.-+...+.+||.
T Consensus 17 QrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~en~~~~~~---LsrAa~~yG~a~~~mEkEre~l~r~l~~QV~ePLR 93 (209)
T cd07607 17 QRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENPSVNTA---LSRASLHYGSARNQMEKERENLHRVLSEQVAEPLR 93 (209)
T ss_pred HHHHHHHhhhhheechhHHHHHHHHHHHHHHhccCCCCcccH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544433222222334455555566653 222221 13356889999999999999999999999999999
Q ss_pred HHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHhc-cccCCC----hh---hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 109 QYVNID-LHEVKEARKCFDKASLLYDQAREKFLS-LRKGTK----TD---VAAILEEELHSARSAFEQARFSLVTALSNV 179 (652)
Q Consensus 109 ~f~~~d-i~~~ke~Rk~Fek~~~~YD~al~ky~s-~~K~k~----~~---~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l 179 (652)
..+... |...+....+|++.+.+-++.-.-.+. ..|.++ ++ +++.++..|.+.+..---..-+....|..+
T Consensus 94 aMv~GaPLEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~M~~LGKEA~aAm~aV 173 (209)
T cd07607 94 AMVYGAPLEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSMNTLGKEATSAMLAV 173 (209)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 987653 456677778899999888865555432 334332 22 356677788888888777777888999998
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006276 180 EAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQME 213 (652)
Q Consensus 180 ~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~ 213 (652)
+.+.----++.|+..+++.-+|+.+..+++++++
T Consensus 174 EaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~ 207 (209)
T cd07607 174 EDQQQQVTLQRLLAMVEAERAYHQRAADILDKLH 207 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8766667789999999999999999999988764
No 157
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=97.00 E-value=0.46 Score=48.28 Aligned_cols=96 Identities=10% Similarity=0.079 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 24 EVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHML 103 (652)
Q Consensus 24 e~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i 103 (652)
+.|.++++.-++.|+.+..=+.+-...+..++..|..++........+....+++..+-.....+...|..+..++...+
T Consensus 8 ~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~gsl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v 87 (236)
T cd07651 8 DVIQTRIKDSLRTLEELRSFYKERASIEEEYAKRLEKLSRKSLGGSEEGGLKNSLDTLRLETESMAKSHLKFAKQIRQDL 87 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666655544443334467888888877653322111111234677777778888889999999999999
Q ss_pred HHHHHHHHHhhhHHHH
Q 006276 104 NDRLLQYVNIDLHEVK 119 (652)
Q Consensus 104 ~~pL~~f~~~di~~~k 119 (652)
..||..|.+..-+..+
T Consensus 88 ~~~l~~~~~~~~~~rK 103 (236)
T cd07651 88 EEKLAAFASSYTQKRK 103 (236)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999776444333
No 158
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=97.00 E-value=0.00048 Score=75.01 Aligned_cols=41 Identities=22% Similarity=0.427 Sum_probs=36.2
Q ss_pred CcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHHHhhcc
Q 006276 393 LRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (652)
Q Consensus 393 rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~~~l~~ 433 (652)
-+-.|+|.|.++||+|.|.+++..++|++.|+-|++.+-..
T Consensus 802 lpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~IavAHa~~r 842 (851)
T KOG3723|consen 802 LPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAVAHAKER 842 (851)
T ss_pred cchhhheeecCceEEeecccccCHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999988766443
No 159
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.95 E-value=0.0063 Score=54.10 Aligned_cols=37 Identities=8% Similarity=0.331 Sum_probs=32.4
Q ss_pred CcccEEEEeCC--eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006276 393 LRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIAS 429 (652)
Q Consensus 393 rrfcF~I~t~~--r~~~lqA~se~e~~~Wi~ai~~ai~~ 429 (652)
.+++|.|+..+ ..|+|.|.|+++++.||++|.-|++.
T Consensus 75 ~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 75 WKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred eEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 46889999876 45999999999999999999988764
No 160
>PLN02866 phospholipase D
Probab=96.84 E-value=0.0068 Score=71.84 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=33.7
Q ss_pred CCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006276 392 DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (652)
Q Consensus 392 ~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~ 428 (652)
..+|.|.|.+.+|++.|.|.|...+..|+.+|+.+..
T Consensus 272 ~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~~ 308 (1068)
T PLN02866 272 PLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAGL 308 (1068)
T ss_pred CCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999999999988853
No 161
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=96.84 E-value=0.1 Score=61.68 Aligned_cols=74 Identities=20% Similarity=0.218 Sum_probs=60.4
Q ss_pred HccCCCCccccCCCC-CCCceeeccceeeeccchhhhcccCCCccceeEeecCCCCCCHHHHHHHHHhchHHHHHHHHh
Q 006276 507 RRVCGNDRCADCGAP-EPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEE 584 (652)
Q Consensus 507 ~~~~~N~~C~dC~~~-~p~w~s~~~gv~~C~~Cs~~Hr~lg~~is~vks~~ld~~~w~~~~i~~~~~~GN~~~n~~~e~ 584 (652)
.....+..|++|++. ...|+++|+.+.+|+.|+++|+.++.|++..+++.|| ...+ |......||..++..|..
T Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~--~ga~--vn~~d~~g~~plh~~~~~ 699 (785)
T KOG0521|consen 625 VKASSDGECLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQ--NGAD--VNALDSKGRTPLHHATAS 699 (785)
T ss_pred HHhccCccchhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHh--cCCc--chhhhccCCCcchhhhhh
Confidence 344568899999995 5789999999999999999999999999999999998 3444 777777777766655543
No 162
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=96.77 E-value=0.39 Score=46.78 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCC--CCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 25 VLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHND--PISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHM 102 (652)
Q Consensus 25 ~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d--~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~ 102 (652)
.|.++++.-+..|+.+.+-+.+-...+..++..|..++....+ .........+...+......+...+..+...+...
T Consensus 4 ~l~~~~~~g~~~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~~~~~~t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~ 83 (191)
T cd07610 4 LLEKRTELGLDLLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKPESGKTSLGTSWNSLREETESAATVHEELSEKLSQL 83 (191)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333456778888666532211 11101113467777777888888889999899999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 103 LNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNV 179 (652)
Q Consensus 103 i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l 179 (652)
+..|+..|....=..-+......++....|..+.....+ +..+.-......+...+..|...-+.-+..++++
T Consensus 84 i~~~~~~~~~~~~~~rk~~~~~~~~~~k~~~~~~~~~~k----k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 156 (191)
T cd07610 84 IREPLEKVKEDKEQARKKELAEGEKLKKKLQELWAKLAK----KADEEYREQVEKLNPAQSEYEEEKLNKIQAEQER 156 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999987753222444445555555555554444333 1222234445566667777766555555554444
No 163
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=96.72 E-value=0.7 Score=47.09 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCC----CCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 25 VLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG----HNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVE 100 (652)
Q Consensus 25 ~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~----~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~ 100 (652)
.|...++.=.+.|+.+..-+.+--..+..++..|..++.- ..+.. .....++..|......+...|..+..++.
T Consensus 9 ~l~~~~~~G~~~ckel~~f~kERa~IE~~YAK~L~kLa~k~~k~~~~~~--Gtl~~aw~~~~~e~e~~a~~H~~la~~L~ 86 (239)
T cd07658 9 ELRRYVKQGGDFCKELATVLQERAELELNYAKGLSKLSGKLSKASKSVS--GTLSSAWTCVAEEMESEADIHRNLGSALT 86 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444444334456777777665421 11111 11234778888888888999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 006276 101 HMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQ 134 (652)
Q Consensus 101 ~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~ 134 (652)
..+..||..|+++..+.-++....|++++...-.
T Consensus 87 ~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~ 120 (239)
T cd07658 87 EEAIKPLRQVLDEQHKTRKPVENEVDKAAKLLTD 120 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998666655555555555554433
No 164
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=96.70 E-value=0.0069 Score=69.12 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=30.8
Q ss_pred ccEEEEeC---CeeEEEEeCCHHHHHHHHHHHHHHHHHhh
Q 006276 395 FCFRIISP---TKNYTLQAESALDQMDWIEKITGVIASLL 431 (652)
Q Consensus 395 fcF~I~t~---~r~~~lqA~se~e~~~Wi~ai~~ai~~~l 431 (652)
|.|.|-.. ++...|-|-|.+|...||+||+.||....
T Consensus 74 yvl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~ 113 (719)
T PLN00188 74 YVLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQHQ 113 (719)
T ss_pred EEEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhhc
Confidence 66666653 46799999999999999999999999653
No 165
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.60 E-value=0.99 Score=45.78 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 26 LRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLND 105 (652)
Q Consensus 26 l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~~ 105 (652)
|-..++.=.+.|+.+.+-+.+-...++.++..|..++.-......+.....++..|-.....+...|..|...+...+..
T Consensus 10 l~~~~k~g~~~~~el~~fl~ERa~IEe~Yak~L~klak~~~~~~e~Gtl~~sw~~~~~e~E~~a~~H~~la~~L~~ev~~ 89 (233)
T cd07649 10 LLQKQLKGKQMQKEMAEFIRERIKIEEEYAKNLSKLSQSSLAAQEEGTLGEAWAQVKKSLADEAEVHLKFSSKLQSEVEK 89 (233)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444554444443333445677777766654222211122223578888888999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006276 106 RLLQYVNIDLHEVKEARKCFDKASLLY 132 (652)
Q Consensus 106 pL~~f~~~di~~~ke~Rk~Fek~~~~Y 132 (652)
||..|.+...+..++.-..|++++...
T Consensus 90 ~l~~f~~~~~k~~k~~e~~~~k~~K~~ 116 (233)
T cd07649 90 PLLNFRENFKKDMKKLDHHIADLRKQL 116 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987776666666666666654
No 166
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=96.58 E-value=0.85 Score=45.01 Aligned_cols=182 Identities=12% Similarity=0.124 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhcccchHHHHHHHHHHhhCCC-CCCC-ccccCchhHHHHHHHHHHH
Q 006276 12 FRKQIQGLEESAEVLRERSLKFYKGCR-KYTEGLGEGYDGDIAFASALETFGGGH-NDPI-SVAFGGPVMTKFTIALREI 88 (652)
Q Consensus 12 FRasv~~~E~~le~l~~~l~kl~K~~k-k~~~~~~~~~~~~~~f~~~L~~f~~~~-~d~~-~~~~~g~~L~~f~~~lkel 88 (652)
|..-+..+++.|..|...++...|-+. -+.. ....+..++..++..+ .|+. ..+.+..+|...++....|
T Consensus 9 f~~f~~~md~svk~l~~~~~~~~kk~~~~~kk-------eyqk~G~af~~L~~af~~d~~~~~t~Ls~Al~~~g~~~e~I 81 (199)
T cd07626 9 FKKFVKSMDDSVKNLINIAQEQAKKHQGPYKK-------EYQKIGQAFTSLGTAFELDETPTSVPLTQAIKHTGQAYEEI 81 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-------HHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHH
Confidence 444455555555555555544444432 1111 1133445555544321 1111 1112235788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHH
Q 006276 89 GTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQA 168 (652)
Q Consensus 89 ~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~a 168 (652)
+..+..--...- .||...++..++.+-..+.-|.- +-.++.|.....+.-...++ ...++.+.++.+...
T Consensus 82 g~l~~eQa~~D~----~~l~E~L~eY~gll~~~pdi~~~----~k~al~K~kE~~r~~~egk~--~~~e~~ev~~r~d~I 151 (199)
T cd07626 82 GELFAEQPKHDL----IPLLDGLHEYKGLLSTFPDIIGV----HKGAVQKVKECERLVDEGKM--SSAELEEVKRRTDVI 151 (199)
T ss_pred HHHHHHhhHhhH----HHHHHHHHHHHhHHHhhhHHHHH----HHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHH
Confidence 887655543322 33333333333322222222211 11112221111110000001 234677799999999
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006276 169 RFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLH 210 (652)
Q Consensus 169 slDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~ 210 (652)
+.-....|+.++..+..+|-..+..|+..|..||++-.+-++
T Consensus 152 S~~~~aE~~~F~~eRv~Dfk~~m~~yLe~qI~fyqqI~~kl~ 193 (199)
T cd07626 152 SYALLAEINHFHRERVRDFKSMMRNYLQQQIEFYQKIAAKLE 193 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 989999999998888889999999999999999988766554
No 167
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.54 E-value=1.2 Score=45.87 Aligned_cols=160 Identities=13% Similarity=0.186 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhC-------CCC-CCCccccCchhHHHHHHHHHH---H
Q 006276 20 EESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG-------GHN-DPISVAFGGPVMTKFTIALRE---I 88 (652)
Q Consensus 20 E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~-------~~~-d~~~~~~~g~~L~~f~~~lke---l 88 (652)
-++.+.+.+|...=++.|+.+..-+.+-...+..++..|..+.. ... +...++ ....|...+.| +
T Consensus 4 ~D~~~~l~k~~~~Gi~~~~~i~~f~kERa~IEkeYakkL~~L~kKy~~kk~~~~~~~~~~t----~~~aw~~~l~e~~~~ 79 (253)
T cd07676 4 WDQFDNLEKHTQWGIEVLEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYT----SCRAFLMTLNEMNDY 79 (253)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccch----HHHHHHHHHHHHHHH
Confidence 46677888888888888887766555544556788888866542 111 111122 34555555555 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 006276 89 GTYKEVLRSQVEHMLNDRLLQYVN---------------------IDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTK 147 (652)
Q Consensus 89 ~~~~~~l~~~~~~~i~~pL~~f~~---------------------~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~ 147 (652)
...|+.+..++...++.||..++. ..++.+..+|+.|+++-.+-++|..++......-.
T Consensus 80 A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~ 159 (253)
T cd07676 80 AGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADIN 159 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 577888888888888888766554 22344555677777777777777777655443211
Q ss_pred --hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006276 148 --TDVAAILEEELHSARSAFEQARFSLVTALSNVEAKK 183 (652)
Q Consensus 148 --~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k 183 (652)
...++-+...+.........+--+|...|+.+...+
T Consensus 160 ~sk~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q 197 (253)
T cd07676 160 VTKADVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQ 197 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111222333444444444555556666666654333
No 168
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.50 E-value=1.1 Score=45.81 Aligned_cols=135 Identities=15% Similarity=0.130 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCC-------CCccccCchhHHHH
Q 006276 9 SPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHND-------PISVAFGGPVMTKF 81 (652)
Q Consensus 9 SP~FRasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d-------~~~~~~~g~~L~~f 81 (652)
.|.|....+...+.|..+...+.++...+..+..-....-.....|+..|..|+....+ ......+...|...
T Consensus 17 p~~~~~~~~~~r~~I~~l~~~~~~l~~l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 96 (246)
T cd07597 17 PPDFQEQWANSRERIRRLLESWTKLRVLAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWAGDSDTWGDINEGLSSL 96 (246)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHHHH
Confidence 36666666666666666666666666666655544333222346678888887753322 11111112234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--------HHHHHHHHHHHHHhcccc
Q 006276 82 TIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFD--------KASLLYDQAREKFLSLRK 144 (652)
Q Consensus 82 ~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fe--------k~~~~YD~al~ky~s~~K 144 (652)
+.-+..+......-.......++++|..|++- |..++++-.+.+ ....+++..-.|+.+++-
T Consensus 97 s~~~~~~s~~~~~~a~~~~~~vlE~Lk~~~d~-l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~ 166 (246)
T cd07597 97 SKHFQLLSDLSEDEARAEEDGVLEKLKLQLDL-LVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRA 166 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444444557778899999999888 666776555444 555666666666666543
No 169
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=96.40 E-value=0.0035 Score=67.37 Aligned_cols=94 Identities=23% Similarity=0.396 Sum_probs=67.0
Q ss_pred eeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcccc
Q 006276 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (652)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (652)
+...|+|-|.. +....|+-|||+|++++ |.||++.....- -
T Consensus 24 ~e~~G~lskwt-nyi~gwqdRyv~lk~g~-Lsyykse~E~~h-------------------------------------G 64 (611)
T KOG1739|consen 24 VERCGVLSKWT-NYIHGWQDRYVVLKNGA-LSYYKSEDETEH-------------------------------------G 64 (611)
T ss_pred hhhcceeeeee-cccccccceEEEEcccc-hhhhhhhhhhhc-------------------------------------c
Confidence 45678888884 34478999999999544 556666654211 1
Q ss_pred ccceeecccceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006276 373 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (652)
Q Consensus 373 ~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~ 428 (652)
.++.|.|..+.+.....+ -..|.|.+....++|-|....+++.|+.+|+--..
T Consensus 65 cRgsi~l~ka~i~ahEfD---e~rfdIsvn~nv~~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 65 CRGSICLSKAVITAHEFD---ECRFDISVNDNVWYLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred cceeeEeccCCcccccch---hheeeeEeccceeeehhcCcHHHHHHHHHHHHHhh
Confidence 245566666666543222 34599999999999999999999999999976643
No 170
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=96.40 E-value=0.23 Score=50.78 Aligned_cols=190 Identities=12% Similarity=0.088 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 006276 20 EESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQV 99 (652)
Q Consensus 20 E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~ 99 (652)
+++++.....++.++...+.|..+.-++...+..|-+.+..++. -+++..+ ..++..|++..+-|+..-..+...+
T Consensus 138 leeLE~tae~Ykglveh~~~ml~a~y~lsqt~k~FGd~F~~i~v--hEpQq~A--sEAF~~Fgd~HR~ieK~g~~~~k~i 213 (429)
T KOG3651|consen 138 LEELEETAEFYKGLVEHFGDMLQAQYKLSQTQKEFGDIFCDIAV--HEPQQTA--SEAFSSFGDKHRMIEKKGSESAKPI 213 (429)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc--cCcchhH--HHHHHHHHHHHHHHHHhccchhhhh
Confidence 45566666677777777776665544433333444444433322 2233333 3479999999999999877777777
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChh--hHhH--------------HHHHHHHHHH
Q 006276 100 EHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTD--VAAI--------------LEEELHSARS 163 (652)
Q Consensus 100 ~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~--~~~E--------------~~~eL~~~Rk 163 (652)
..+ +.-|+.+++..|..-+-.-|+|-...-.|=+.--|...+.-.. -+ .++| .-..-+++|.
T Consensus 214 kpm-lsDL~tYlnkaiPDTrLTikkYlDvKfeYLSYCLKvKEMDDEE-~~f~AlqEPLYRVeTGNYEYRliLRCRQeaRa 291 (429)
T KOG3651|consen 214 KPM-LSDLQTYLNKAIPDTRLTIKKYLDVKFEYLSYCLKVKEMDDEE-VEFVALQEPLYRVETGNYEYRLILRCRQEARA 291 (429)
T ss_pred hHH-HHHHHHHHhccCCcchhhhHHhhhhhHHHHHHHHhhhhccchh-hceeeecCceeEeecCCeeeehhHHHHHHHHH
Confidence 666 4557888888776666555555555555544444432222110 00 0011 1224568999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006276 164 AFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPY 215 (652)
Q Consensus 164 ~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~ 215 (652)
.|.+..-|.+.+|..+..++-.++..+|..++..+..+++.+.+.+.+...|
T Consensus 292 rF~kmR~DVleKmELLdqKHv~Di~~qL~~l~~tmak~~~~c~~~L~~~~~f 343 (429)
T KOG3651|consen 292 RFMKMRDDVLEKMELLDQKHVRDIAQQLAILAKTMAKCQQECAEILKERIDF 343 (429)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999988888999999999999999999999988765433
No 171
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.38 E-value=0.74 Score=46.55 Aligned_cols=165 Identities=13% Similarity=0.166 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCC--CCCccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 006276 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHN--DPISVAFGGPVMTKFTIALREIGTYKEVLRSQ 98 (652)
Q Consensus 21 ~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~--d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~ 98 (652)
+.++.|..+|....+.|+.+..-+.+-...++.++..|..+..... ....+....+++..+-.....+...|..|..+
T Consensus 5 ~a~~~l~~Rl~~~~~~~~el~~~~kERa~IE~~Yak~L~kLakk~~~~~~~e~g~~~~~w~~i~~e~e~~a~~H~~la~~ 84 (228)
T cd07650 5 EATEILRIRLSQIKLVNTELADWLQERRRLERQYVQGLRKLARRNEPLNKSLLGVFQNPWLTIESETEFIAASHGELAQR 84 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778888888877766666655567889999988764211 11111111135677777788888899999999
Q ss_pred HHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHH
Q 006276 99 VEHMLNDRLLQYVNID--------LHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARF 170 (652)
Q Consensus 99 ~~~~i~~pL~~f~~~d--------i~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~asl 170 (652)
+...+..||..|.... +..+...-+.|+.++...+....+..+... .....+...|..+|..+...+-
T Consensus 85 l~~~ve~~l~~~~~~~~~~~~l~~~q~l~~~~k~~~e~~k~~~Kl~kk~~k~~~----~~~~~~~~~l~~~~~~We~~~~ 160 (228)
T cd07650 85 IETDVEEPLRDFATSTEFMNTLDDDQNLSNLAKELDESQKKWDKLKKKHSKASS----KAVSAAVSDLEEARQQWDSQAP 160 (228)
T ss_pred HHHHHHHHHHHHHhcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999999996552 112344445555555544444444222211 1122235678999999999998
Q ss_pred HHHHHHHHHhhhhhhhHHHH
Q 006276 171 SLVTALSNVEAKKRFEFLEA 190 (652)
Q Consensus 171 Dyv~~l~~l~~~k~~e~le~ 190 (652)
.++..++.+...+ +.+|..
T Consensus 161 ~~~e~fQ~leeeR-l~~lk~ 179 (228)
T cd07650 161 FLFELLQAIDEER-LNHLKD 179 (228)
T ss_pred HHHHHHHHHHHHH-HHHHHH
Confidence 8888888886542 344443
No 172
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.36 E-value=0.44 Score=47.13 Aligned_cols=181 Identities=17% Similarity=0.194 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (652)
Q Consensus 22 ~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~ 101 (652)
+|+.+|.-++.|-..+.+++..-..++.+...+..+...|++++.|....+.++++ ++++++.+......+.+. ..
T Consensus 3 ~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~---i~~~L~kF~~~l~ei~~~-~~ 78 (200)
T cd07637 3 TIDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEM---ISECLDKFGDSLQEMVNY-HM 78 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH---HHHHHHHHHHHHHHHHHH-HH
Confidence 57888899999999998888877778888899999999999988886655655543 556777777766555433 34
Q ss_pred HHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHH-hccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 102 MLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKF-LSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNV 179 (652)
Q Consensus 102 ~i~~pL~~f~~~di~~~k-e~Rk~Fek~~~~YD~al~ky-~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l 179 (652)
.+...++..+..-|..+. +--+.|...+..||.+..+| .++.|.......+ ..++.++-.....+
T Consensus 79 ~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k~kk--~~~l~Ea~~~L~~~----------- 145 (200)
T cd07637 79 ILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAPRHK--PHEVEEATSTLTIT----------- 145 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHH-----------
Confidence 556666766766676663 55567888889999988888 5666532222112 12333332222111
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHH
Q 006276 180 EAKKRFEFLEAVSGTMDAHLRY-FKQGYELLHQMEPYINQVLTYA 223 (652)
Q Consensus 180 ~~~k~~e~le~l~~~~~aq~~f-f~~g~e~~~~l~~~l~el~~~l 223 (652)
+-.|....++|+.+.... .++.++.++.+-.|+....++.
T Consensus 146 ----Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff 186 (200)
T cd07637 146 ----RKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFF 186 (200)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124555556655443333 3566666666655555555444
No 173
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.12 E-value=0.9 Score=44.84 Aligned_cols=46 Identities=20% Similarity=0.083 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCC
Q 006276 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHND 67 (652)
Q Consensus 22 ~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d 67 (652)
+|+.+|.-...|-..+.+++.....++.+...|+.+...|+.++.|
T Consensus 3 ~i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d 48 (200)
T cd07638 3 ALEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRD 48 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888877777766666666666666554433
No 174
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.10 E-value=1.9 Score=43.86 Aligned_cols=155 Identities=12% Similarity=0.161 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 24 EVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHML 103 (652)
Q Consensus 24 e~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i 103 (652)
+.|-++++.=++.|+.+..=+.+-...+..++..|..+.....+...+....+++..+-.....+...+..+..++...+
T Consensus 8 ~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLak~~~~~~e~gsl~~aw~~i~~e~e~~a~~H~~la~~L~~~v 87 (239)
T cd07647 8 DTLLQRLKEGKKMCKELEDFLKQRAKAEEDYGKALLKLSKSAGPGDEIGTLKSSWDSLRKETENVANAHIQLAQSLREEA 87 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666655544444334567788888777653322111111134567777777777788888888887754
Q ss_pred HHHHHHHHHhhh---------------------HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHH
Q 006276 104 NDRLLQYVNIDL---------------------HEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSAR 162 (652)
Q Consensus 104 ~~pL~~f~~~di---------------------~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~R 162 (652)
..|..|.+... +.+..+|+.|+..-.+.+.+...|...+..-.+..+.-+...+..++
T Consensus 88 -~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~ 166 (239)
T cd07647 88 -EKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCK 166 (239)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 55666654422 23344555555555566666666644443222222222333333333
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006276 163 SAFEQARFSLVTALSNV 179 (652)
Q Consensus 163 k~f~~aslDyv~~l~~l 179 (652)
..=..+.=+|-..+..+
T Consensus 167 ~~~~~a~~~Y~~~v~~l 183 (239)
T cd07647 167 TSAEEADSAYKSSIGCL 183 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444454444444
No 175
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.07 E-value=0.087 Score=47.17 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=28.4
Q ss_pred cccEEEEe--CC---eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006276 394 RFCFRIIS--PT---KNYTLQAESALDQMDWIEKITGVIA 428 (652)
Q Consensus 394 rfcF~I~t--~~---r~~~lqA~se~e~~~Wi~ai~~ai~ 428 (652)
+.+|+|.+ +. .+|+|||.|.++.++|+..|+.+.+
T Consensus 74 ~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 74 PCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred CceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 45677765 43 6899999999999999999987753
No 176
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.90 E-value=0.044 Score=48.14 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=39.1
Q ss_pred ceeecccceeeeCCCCCCCcccEEEEeCC-eeEEEEeCCHHHHHHHHHHHHHHH
Q 006276 375 HTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI 427 (652)
Q Consensus 375 ~~i~l~~~~vk~~~~~~~rrfcF~I~t~~-r~~~lqA~se~e~~~Wi~ai~~ai 427 (652)
+.+.|....|....+....++.|+|..+. .++.+.+.+.+|..+||..|+.-+
T Consensus 56 GkLPL~~i~v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~~~ 109 (111)
T cd01225 56 GKLPLTGIIVTRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNANN 109 (111)
T ss_pred eeecccccEEechHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHhhc
Confidence 33445555555333455668999999886 678899999999999999998743
No 177
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=95.88 E-value=2.6 Score=43.47 Aligned_cols=38 Identities=3% Similarity=0.059 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006276 76 PVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNI 113 (652)
Q Consensus 76 ~~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~ 113 (652)
.++..+-.....++..|..+...+...+..||..|.++
T Consensus 64 ~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e 101 (258)
T cd07655 64 TAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKE 101 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777788889999999999999999888753
No 178
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.81 E-value=2.9 Score=43.43 Aligned_cols=96 Identities=11% Similarity=0.133 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 25 VLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLN 104 (652)
Q Consensus 25 ~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~ 104 (652)
.|-..++.=...|+.+..-+.+-...++.++..|..++....+...+....+++..+-.....+...+..+..++.. ++
T Consensus 16 ~L~~r~k~g~~~~kel~~f~keRa~iEe~Yak~L~kLak~~~~~~~~Gt~~~~~~~~~~e~e~~a~~H~~la~~L~~-~~ 94 (269)
T cd07673 16 VLYHNMKHGQISTKELSDFIRERATIEEAYSRSMTKLAKSASNYSQLGTFAPVWDVFKTSTEKLANCHLELVRKLQE-LI 94 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34444555555555554444443344677788887776433222222112335777777788888888899888885 66
Q ss_pred HHHHHHHHhhhHHHHHH
Q 006276 105 DRLLQYVNIDLHEVKEA 121 (652)
Q Consensus 105 ~pL~~f~~~di~~~ke~ 121 (652)
.+|..|.++..+..|..
T Consensus 95 ~~l~~~~~~~~k~rK~~ 111 (269)
T cd07673 95 KEVQKYGEEQVKSHKKT 111 (269)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 88999987765544443
No 179
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.66 E-value=1.4 Score=43.56 Aligned_cols=153 Identities=15% Similarity=0.203 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (652)
Q Consensus 22 ~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~ 101 (652)
+|+.+|.-+++|-..+++++..-..++.+...+..+-..| +.++.++.... .-+.
T Consensus 3 ~i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F--------------------~~~L~~f~~~~-----~~D~ 57 (200)
T cd07639 3 AIEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAF--------------------VDGLCDLAHHG-----PKDP 57 (200)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhccC-----CCCc
Confidence 6788899999999999988776444444444444444444 44444443200 1112
Q ss_pred HHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006276 102 MLNDRLLQYVNIDLHEVKEA-RKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVE 180 (652)
Q Consensus 102 ~i~~pL~~f~~~di~~~ke~-Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~ 180 (652)
.+..+|..|..- |+++.+. +.-++.++...-.-|.++.. ++-..+.++||.|.+++-+|...+...-
T Consensus 58 ~i~~~l~kFs~~-l~ei~~~~~~Ll~~~~~~l~~~L~~F~k-----------~dl~~vKe~kK~FdK~s~~~d~al~K~~ 125 (200)
T cd07639 58 MMAECLEKFSDG-LNHILDSHAELLEATQFSFKQQLQLLVK-----------EDLRGFRDARKEFERGAESLEAALQHNA 125 (200)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHhhhHhhcchhHHHHHHHHh
Confidence 344555555444 4444322 33344444444444444332 1222455677777777777776665532
Q ss_pred h--hhhh-hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 181 A--KKRF-EFLEAVSGTMDAHLRYFKQGYELLHQ 211 (652)
Q Consensus 181 ~--~k~~-e~le~l~~~~~aq~~ff~~g~e~~~~ 211 (652)
. |++- ++-+.-.....+...|.+...+++..
T Consensus 126 ~~~k~k~~e~~Ea~~~l~~~R~~F~~~~ldYV~~ 159 (200)
T cd07639 126 ETPRRKAQEVEEAAAALLGARATFRDRALDYALQ 159 (200)
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2222 33333333334444455566665543
No 180
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=95.58 E-value=1.3 Score=43.83 Aligned_cols=45 Identities=7% Similarity=-0.026 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCC
Q 006276 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGH 65 (652)
Q Consensus 21 ~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~ 65 (652)
+.+...|..|+++.|.+++++..-..+..+...+..+-..|..+.
T Consensus 2 ~~~~~~e~~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L 46 (207)
T cd07635 2 ERIRAHEAELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHSL 46 (207)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999988753333333344444444444443
No 181
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=95.42 E-value=3.6 Score=41.88 Aligned_cols=107 Identities=17% Similarity=0.107 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhh----CCCCCCCccccCchhHHHHHHHHHHHHHH---HHHHHHHHHH
Q 006276 29 RSLKFYKGCRKYTEGLGEGYDGDIAFASALETFG----GGHNDPISVAFGGPVMTKFTIALREIGTY---KEVLRSQVEH 101 (652)
Q Consensus 29 ~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~----~~~~d~~~~~~~g~~L~~f~~~lkel~~~---~~~l~~~~~~ 101 (652)
||+.+.+.++.=.. .+..++..|..+. .+..++.. ++.+....|...+.++... +..+..++..
T Consensus 20 lLe~i~~F~reRa~-------iE~EYA~~L~~L~kq~~k~~~~~~~--~~s~~~~sW~~iL~ete~~A~~~~~~ae~l~~ 90 (237)
T cd07657 20 LLETMKKYMAKRAK-------SDREYASTLGSLANQGLKIEAGDDL--QGSPISKSWKEIMDSTDQLSKLIKQHAEALES 90 (237)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhCcCCCcccC--CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666663222 1244556664443 22212211 1222345566666665553 4455555555
Q ss_pred HHHHHH---------------------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 006276 102 MLNDRL---------------------LQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRK 144 (652)
Q Consensus 102 ~i~~pL---------------------~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K 144 (652)
.++.+| ++-+..-+..+..+|+.|++...+.+.|..||-....
T Consensus 91 ~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~ 154 (237)
T cd07657 91 GTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVV 154 (237)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555554 3344445567778899999999999999999866544
No 182
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.32 E-value=4 Score=41.83 Aligned_cols=159 Identities=12% Similarity=0.189 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhC-------CCCCCCccccCchhHHHHHHHHHHHHHHHH
Q 006276 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG-------GHNDPISVAFGGPVMTKFTIALREIGTYKE 93 (652)
Q Consensus 21 ~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~-------~~~d~~~~~~~g~~L~~f~~~lkel~~~~~ 93 (652)
++.+.+..|++.=++.++.+..=+.+-...+..|+..|..+.. ...+.-.+++ ..++..+-..+.++...++
T Consensus 5 Dqf~~~~k~~~~Gi~~l~~~~~F~keRa~IE~eYakkL~~L~Kky~~KK~~~~e~p~~t~-~~s~~~~L~~~~~~a~q~e 83 (252)
T cd07675 5 DQFDNLDKHTQWGIDFLERYAKFVKERLEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTS-CLSFYNILNELNDYAGQRE 83 (252)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccH-HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655554433222222335667777755432 1112112222 1234444455556666777
Q ss_pred HHHHHHHHHHHHHHHHHH---------------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChh--h
Q 006276 94 VLRSQVEHMLNDRLLQYV---------------------NIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTD--V 150 (652)
Q Consensus 94 ~l~~~~~~~i~~pL~~f~---------------------~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~--~ 150 (652)
.+..++...++.||.++. +..++.+..+|++|+++-.+=+.|..+|..+....... .
T Consensus 84 ~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~ 163 (252)
T cd07675 84 VVAEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSD 163 (252)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHH
Confidence 787777777776665543 33344566677777777777777777777665543211 1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006276 151 AAILEEELHSARSAFEQARFSLVTALSNVE 180 (652)
Q Consensus 151 ~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~ 180 (652)
..-+..++.........+--+|...|+.+.
T Consensus 164 ~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N 193 (252)
T cd07675 164 VEKAKQQLNLRTHMADESKNEYAAQLQNFN 193 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333444444444455555665565554
No 183
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=95.32 E-value=3.9 Score=41.74 Aligned_cols=101 Identities=12% Similarity=0.146 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 28 ERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRL 107 (652)
Q Consensus 28 ~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL 107 (652)
..++.=...|+.+.+-+.+-...+..++..|..++........+.....++..|-..+..++..|..+..++... +.||
T Consensus 12 ~r~~~g~~~c~el~~f~keRa~iE~~Yak~L~kl~kk~~~~~e~gTl~~a~~~~~~e~e~~a~~H~~ia~~L~~~-~~~l 90 (242)
T cd07671 12 QRLLDGRKMCKDVEELLKQRAQAEERYGKELVQIARKAGGQTEINTLKASFDQLKQQIENIGNSHIQLAGMLREE-LKSL 90 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 333333444444433333333345777888877765322211111112356666666777777888888877776 4668
Q ss_pred HHHHHhhhHHHHHHHHHHHHHH
Q 006276 108 LQYVNIDLHEVKEARKCFDKAS 129 (652)
Q Consensus 108 ~~f~~~di~~~ke~Rk~Fek~~ 129 (652)
..|....-..-+..-..|++.+
T Consensus 91 ~~f~~~qke~rK~~e~~~eK~q 112 (242)
T cd07671 91 EEFRERQKEQRKKYEAVMERVQ 112 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8887665444333333333333
No 184
>KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=4.5 Score=42.37 Aligned_cols=142 Identities=11% Similarity=0.142 Sum_probs=102.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChh-----
Q 006276 75 GPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTD----- 149 (652)
Q Consensus 75 g~~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~----- 149 (652)
|-+|...|.++---...+.-+...+ ..+-+-+.-|+...|..-...-.+.++++.+|..+|.=....+-.-+|+
T Consensus 106 gkmm~atgkal~fssqqrla~r~pl-~r~~~ev~vF~~RAI~Dt~qTi~~meq~RTEYRgaLlWMK~~SqELDPdt~k~m 184 (436)
T KOG3891|consen 106 GKMMIATGKALCFSSQQRLALRIPL-SRFYQEVSVFRERAISDTSQTINRMEQCRTEYRGALLWMKDVSQELDPDTDKQM 184 (436)
T ss_pred hhHHHHHhHHhhhhHHHHHHHhhhH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCcchhhHH
Confidence 4467777777744444333333333 3446678888999998888888899999999999998776666655554
Q ss_pred -hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006276 150 -VAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEA-VSGTMDAHLRYFKQGYELLHQMEPYINQ 218 (652)
Q Consensus 150 -~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~-l~~~~~aq~~ff~~g~e~~~~l~~~l~e 218 (652)
+-+++..++..+++.|....+|.+.++..+-..+. -++.+ |..|......||++....+..+...+.-
T Consensus 185 eKFRkaQt~Vr~aK~nfDklkmD~~QKVDLL~AsRc-NllSh~Lt~YqteL~~f~~Kta~tf~ti~ea~~~ 254 (436)
T KOG3891|consen 185 EKFRKAQTQVRSAKENFDKLKMDVCQKVDLLGASRC-NLLSHVLTTYQTELLEFWSKTARTFETIHEACIG 254 (436)
T ss_pred HHHHHHHHHHHHHHhccchhhhHHHHHHhHhhHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34678889999999999999999999999887765 45544 4466667777777777777666544433
No 185
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=2.6 Score=47.90 Aligned_cols=193 Identities=18% Similarity=0.202 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHH-H
Q 006276 18 GLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVL-R 96 (652)
Q Consensus 18 ~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l-~ 96 (652)
...++++.++..+.++.+.+...+.....+......|...+..++.-. .... .....+..+......+....... .
T Consensus 278 e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~-~~~~--~l~~~~~~~~~~~~~~~~~~e~~~~ 354 (503)
T KOG2273|consen 278 EKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAELGKALAQLSALE-GETD--ELSEALSGLAKVIESLSKLLEKLTA 354 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hchH--HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455666666666666666666544433333333344555555444311 1110 11246777777777777777777 6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHHHHHHHhccccCCC----hhhHh-------------
Q 006276 97 SQVEHMLNDRLLQYVNIDLHEVKEARKCF-------DKASLLYDQAREKFLSLRKGTK----TDVAA------------- 152 (652)
Q Consensus 97 ~~~~~~i~~pL~~f~~~di~~~ke~Rk~F-------ek~~~~YD~al~ky~s~~K~k~----~~~~~------------- 152 (652)
.+....+..++..|+.- +..++..-+.. ..++.++.........+.+... .++..
T Consensus 355 ~~~~~~~~~~l~~~i~~-~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~ 433 (503)
T KOG2273|consen 355 EKDSKKLAEQLREYIRY-LESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKV 433 (503)
T ss_pred hhhHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHH
Confidence 66666777777777665 33333222222 3333333332222222222110 01111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006276 153 -ILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (652)
Q Consensus 153 -E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~ 214 (652)
+.+.++...+......+-++-..+..++..+..++...+..|...+..++.+..+.+..+.+
T Consensus 434 ~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~~~~~d~~~~~~~~~d~~i~~~~~~l~~W~~~~~ 496 (503)
T KOG2273|consen 434 NELEELLALKELELDEISERIRAELERFEESRRQDFKESLKKYADLHVEYAEQILKAWEKFLP 496 (503)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11112222222222444444455566666666677777777777777777777666655544
No 186
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=95.28 E-value=2.1 Score=42.46 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHH-HHHHHHH
Q 006276 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYK-EVLRSQV 99 (652)
Q Consensus 21 ~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~-~~l~~~~ 99 (652)
++|...|.-|+++.|.|++++..- ..+.+++..++. +-..|+.+++++.-.- -.-.+..
T Consensus 2 ~~l~~~E~~le~~~k~ik~liK~~-------k~~i~A~k~~~~-------------a~~~Fa~sL~~f~~~~~gd~~~dD 61 (207)
T cd07636 2 ERLKSHEAELDKTNKFIKELIKDG-------KSLIAALKNLSS-------------AKRKFADSLNEFKFQCIGDAETDD 61 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------------HHHHHHHHHHHHHhhcCCCccccc
Confidence 467888999999999999887752 345566554432 4456666666666210 0001222
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 100 EHMLNDRLLQYVNIDLHEVKEAR-KCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSN 178 (652)
Q Consensus 100 ~~~i~~pL~~f~~~di~~~ke~R-k~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~ 178 (652)
+..+..+|..|... |.++.+.| .-++.++...-..|.++.. +.-....++||.|.+.+-+|...+..
T Consensus 62 e~~I~~~L~kF~~~-L~ei~~~r~~L~~qa~~~l~~~L~~F~k-----------edi~~~Ke~kK~FdK~se~~~~al~k 129 (207)
T cd07636 62 EICIARSLQEFAAV-LRNLEDERTRMIENASEVLITPLEKFRK-----------EQIGAAKEAKKKYDKETEKYCAVLEK 129 (207)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhHhhhhhHHHHHHHH
Confidence 33455777777666 55555444 3456666666666666533 22335677899999999999887776
Q ss_pred H-h--hhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006276 179 V-E--AKKRF-EFLEAVSGTMDAHLRYFKQGYELLHQM 212 (652)
Q Consensus 179 l-~--~~k~~-e~le~l~~~~~aq~~ff~~g~e~~~~l 212 (652)
. + .+++- ++-+.-...-.....|.+-..++.-+|
T Consensus 130 ~~~ls~k~K~~~~eEA~~~L~~~r~~F~~~sLdYV~qi 167 (207)
T cd07636 130 HLNLSSKKKESQLHEADSQVDLVRQHFYEVSLEYVFKV 167 (207)
T ss_pred HhcCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 2 23333 444443444445555667777776543
No 187
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=95.22 E-value=1.7 Score=44.02 Aligned_cols=188 Identities=12% Similarity=0.110 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--------hHHHHHHHHHHhhCCC-CCC-CccccCchhHHHHHH
Q 006276 14 KQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYD--------GDIAFASALETFGGGH-NDP-ISVAFGGPVMTKFTI 83 (652)
Q Consensus 14 asv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~--------~~~~f~~~L~~f~~~~-~d~-~~~~~~g~~L~~f~~ 83 (652)
..+...|.+++.+...++.+-+.++.+.+...++.. .-..+..++..++..+ .|+ .....+..+|...|+
T Consensus 34 ld~~~ve~~~e~f~~F~k~Md~sv~~l~~~~~~~~kk~~~~~kkE~qkiG~af~~Ls~afe~d~~~~~~~L~~Al~~tg~ 113 (237)
T PF10456_consen 34 LDPQDVESQVESFKKFTKSMDDSVKQLSSVANEFAKKHQGPFKKEYQKIGQAFQSLSQAFELDQQQASMPLTNALKHTGD 113 (237)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS--SSHCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHhcCCchhhhHHHHHHHHHHH
Confidence 446677788888777666666666554443332221 1133444444444311 222 111222346777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHH
Q 006276 84 ALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARS 163 (652)
Q Consensus 84 ~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk 163 (652)
.+.+|+.....--. .. ..||... |..|+-.-..|--+-..+..++.|+-...|-....+ -...++...++
T Consensus 114 ~y~~Ig~l~~~Qpk---~D-~~pl~d~----L~~Y~GlL~~~pdii~~hk~A~~k~ke~~kl~~e~K--~~~~~~~~v~~ 183 (237)
T PF10456_consen 114 TYEEIGDLFAEQPK---ND-LIPLLDC----LKEYRGLLSNFPDIISVHKGALQKVKECEKLSDEGK--MSQQEAEEVQR 183 (237)
T ss_dssp HHHHHHHHHHTSGG---GT-HHHHHHH----HHHHHHHHHTHHHHHHHHHHHHHHCTCHHHHHHTTS--S-HHHHHHHHH
T ss_pred HHHHHHHHHHhccc---cc-hHHHHHH----HHHHhhhHhhCccHHHHHHHHHHHHHHHHHHHhccC--CCHHHHHHHHH
Confidence 87777775322111 11 2233332 445666666777777777777777544332111111 12456778888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 164 AFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (652)
Q Consensus 164 ~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~ 211 (652)
.-.-.+.-....|+-++..+..+|-..|-.|+..|..||++..+.+++
T Consensus 184 R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL~~Qi~Fyq~i~~kLe~ 231 (237)
T PF10456_consen 184 RCDVISYAVLAEMNHFHQERVEDFKSMMKTYLQQQIAFYQQIAEKLEQ 231 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888889999998888999999999999999999987777654
No 188
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=95.22 E-value=4.1 Score=41.38 Aligned_cols=155 Identities=10% Similarity=0.035 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCC------CCCCccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 006276 25 VLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGH------NDPISVAFGGPVMTKFTIALREIGTYKEVLRSQ 98 (652)
Q Consensus 25 ~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~------~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~ 98 (652)
.|-.+++.-++.|+.+..-+.+-...+..++..|..+...+ .++...+ ...++..+-.....+...+..+...
T Consensus 9 ~Ll~rlK~~~~~~ke~~~FlkkRa~iEeeYak~L~KLak~~~~~~~~~~~~~gs-~~~a~~~il~~~e~lA~~h~~~a~~ 87 (234)
T cd07652 9 TLLDRLKQSIASAKEFATFLKKRAAIEEEHARGLKKLARTTLDTYKRPDHKQGS-FSNAYHSSLEFHEKLADNGLRFAKA 87 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333333455666665543211 1111111 1223444444444555555566555
Q ss_pred HHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHHHHHHHH--Hhcc-ccCCChhhHhHH
Q 006276 99 VEHMLNDRLLQYVNI---------------------DLHEVKEARKCFDKASLLYDQAREK--FLSL-RKGTKTDVAAIL 154 (652)
Q Consensus 99 ~~~~i~~pL~~f~~~---------------------di~~~ke~Rk~Fek~~~~YD~al~k--y~s~-~K~k~~~~~~E~ 154 (652)
+. .+..||..+.++ .+..+..+|++|+..-.+||.+..- +... -..+.+......
T Consensus 88 L~-~~~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK~~Y~~~c~e~Ekar~~~~~~~~~~~~k~~~~~~~~ 166 (234)
T cd07652 88 LN-EMSDELSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAKARYDSLADDLERVKTGDPGKKLKFGLKGNKSAAQH 166 (234)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccchhhHHHh
Confidence 54 455665555332 2334555666666666666655443 2110 001111222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006276 155 EEELHSARSAFEQARFSLVTALSNVEAKKR 184 (652)
Q Consensus 155 ~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~ 184 (652)
+. ++.+.-+.+-.||...++..+..+.
T Consensus 167 Ee---~~~~K~~~A~~~Y~~~v~~~n~~q~ 193 (234)
T cd07652 167 ED---ELLRKVQAADQDYASKVNAAQALRQ 193 (234)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 4455556667788777777766544
No 189
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=94.97 E-value=0.0084 Score=68.41 Aligned_cols=92 Identities=22% Similarity=0.457 Sum_probs=64.4
Q ss_pred eeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccccc
Q 006276 294 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (652)
Q Consensus 294 ~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 373 (652)
...|||+.+-++. ..|+|-|.|..+ -.|++|++..+.. +
T Consensus 925 qLsg~Llrkfkns-sgwqkLwvvft~-fcl~fyKS~qD~~---------------------------------------~ 963 (1036)
T KOG3531|consen 925 QLSGYLLRKFKNS-SGWQKLWVVFTN-FCLFFYKSHQDSE---------------------------------------P 963 (1036)
T ss_pred hhhHHHHHHhhcc-ccceeeeeeecc-eeeEeeccccccc---------------------------------------c
Confidence 4579998664443 589999999984 5556666554311 0
Q ss_pred cceeecccceeee--CCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006276 374 RHTVNLLTSTIKV--DADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 374 ~~~i~l~~~~vk~--~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
...+.|++-++.+ +++.+.+.|.|.|...+..|+|.|+++--.+.||++|+.+
T Consensus 964 laslPlLgysvs~P~~~d~i~K~~vfkl~fk~hvyffraes~yt~~rw~evi~~a 1018 (1036)
T KOG3531|consen 964 LASLPLLGYSVSIPAEPDPIQKDYVFKLKFKSHVYFFRAESYYTFERWMEVITDA 1018 (1036)
T ss_pred cccccccccccCCCCCCCCcchhheeeeehhhhHHHHhhhhhhhhhhHHHHhhcC
Confidence 0112233333322 3456678899999999999999999999999999999766
No 190
>PF15406 PH_6: Pleckstrin homology domain
Probab=94.91 E-value=0.066 Score=46.69 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=25.5
Q ss_pred ccEEEEeCCeeEEEEeCCHHHHHHHHHHHH
Q 006276 395 FCFRIISPTKNYTLQAESALDQMDWIEKIT 424 (652)
Q Consensus 395 fcF~I~t~~r~~~lqA~se~e~~~Wi~ai~ 424 (652)
+-|.+...+...+|||.|..||+.||.+|.
T Consensus 81 ~kF~f~~~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 81 NKFHFKIKGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred ceEEEEeCCceeeeecCCHHHhccHHHHhh
Confidence 346666688899999999999999999885
No 191
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=94.89 E-value=5.4 Score=41.06 Aligned_cols=85 Identities=6% Similarity=0.015 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhC---CCCC-CCccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 26 LRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG---GHND-PISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (652)
Q Consensus 26 l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~---~~~d-~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~ 101 (652)
+.+|++.=.+.|+.+..-+.+--..+..++..|..++. ...+ ...+...-.++..+-..+..++..|..|..++..
T Consensus 10 ~~kr~~~g~~~~~dl~~f~kERA~IE~~Yak~L~~Lakk~~~~~~~~~~~Gtl~~aw~~i~~etE~ia~~H~~la~~L~~ 89 (258)
T cd07680 10 TVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLN 89 (258)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544433333345778888877654 1121 1111111224556666666677778888887877
Q ss_pred HHHHHHHHH
Q 006276 102 MLNDRLLQY 110 (652)
Q Consensus 102 ~i~~pL~~f 110 (652)
.++.++.++
T Consensus 90 e~~e~~r~~ 98 (258)
T cd07680 90 EDLEKVKNW 98 (258)
T ss_pred hHHHHHHHH
Confidence 788888433
No 192
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.86 E-value=0.15 Score=43.55 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.8
Q ss_pred EeCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006276 400 ISPTKNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 400 ~t~~r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
.++.++|+|.|.|..|+.+||++|+.-
T Consensus 67 ~~~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 67 NKNGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred ccCCceEEEEecCHHHHHHHHHHHHHH
Confidence 357899999999999999999999653
No 193
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=94.65 E-value=0.028 Score=64.45 Aligned_cols=94 Identities=14% Similarity=0.327 Sum_probs=63.1
Q ss_pred CceeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcc
Q 006276 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (652)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 370 (652)
.++++.|||.|-+........|||.-+....+.| +.++...
T Consensus 85 sp~~~~gwldk~~pqg~~~~qkr~vkf~~~s~~y-f~~~k~p-------------------------------------- 125 (1186)
T KOG1117|consen 85 SPVIKSGWLDKLSPQGEYPFQKRWVKFDGSSLEY-FLSPKDP-------------------------------------- 125 (1186)
T ss_pred CchhhcchhhccCcCcccccCccceecCCCCccc-cCCCCCC--------------------------------------
Confidence 4579999999997666667889998887544444 4333221
Q ss_pred ccccceeecccc-eeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006276 371 SAARHTVNLLTS-TIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS 429 (652)
Q Consensus 371 ~~~~~~i~l~~~-~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~~ 429 (652)
...+.+.+... .|+. . ...-|+|++..|+++|.++++.++..|++.++++...
T Consensus 126 -y~k~~i~va~is~v~~---~--gd~kfevitn~r~fvfr~e~~~~r~~w~s~l~s~~~~ 179 (1186)
T KOG1117|consen 126 -YSKGPIPVAAISAVRN---F--GDNKFEVITNQRTFVFRQESEGERFIWVSPLQSALKE 179 (1186)
T ss_pred -CCCCceeeehhhhhhh---c--cCceEEEEecceEEEEecCCcccceeeechhhhcchh
Confidence 11111222111 1111 1 1345999999999999999999999999999988643
No 194
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=94.57 E-value=6.4 Score=40.47 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhC---CCCC-CCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 29 RSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG---GHND-PISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLN 104 (652)
Q Consensus 29 ~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~---~~~d-~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~ 104 (652)
.++.=.+.|+.+..-+.+--..+..++..|..++. +..+ ...+..+..++.-|-.....++..|..+..++..-+.
T Consensus 13 R~~dG~~~C~el~~f~~eRA~IE~~YAk~L~~lakk~~~~~e~g~eyGTL~~sw~~~~~e~E~ia~~H~~l~~~L~~E~~ 92 (258)
T cd07681 13 RIEDGYRLCNDLVSCFQERAKIEKGYAQQLSDWARKWRGIVEKGPQYGTLEKAWHAFLTAAERLSEIHLELRENLVGEDS 92 (258)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445554444333332345677777766653 1111 1112222346777888888888889999988888888
Q ss_pred HHHHHHHHh
Q 006276 105 DRLLQYVNI 113 (652)
Q Consensus 105 ~pL~~f~~~ 113 (652)
+|+..+-++
T Consensus 93 e~ir~~QKe 101 (258)
T cd07681 93 EKVRAWQKE 101 (258)
T ss_pred HHHHHHHHH
Confidence 999774444
No 195
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=94.50 E-value=5.9 Score=39.78 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006276 116 HEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKR 184 (652)
Q Consensus 116 ~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~ 184 (652)
.++..+|+.|+..-.++++|..||...++.+..+.+. +....+++|-+... =+|+..|+..+..++
T Consensus 131 ~eveK~Kk~Y~~~c~~~e~AR~K~ekas~~K~~~K~~--EKy~~m~~KL~~~h-N~YlL~I~~An~~kd 196 (237)
T cd07685 131 QDIEKLKSQYRSLAKDSAQAKRKYQEASKDKDRDKAK--EKYVKSLWKLYALH-NEYVLAVRAAQLHHQ 196 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHH--HHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 3677889999999999999999998877665544443 23444555544333 488888888876554
No 196
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.42 E-value=5.7 Score=39.28 Aligned_cols=115 Identities=13% Similarity=0.086 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVE 100 (652)
Q Consensus 21 ~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~ 100 (652)
.+|+..|.-++.|-..+++++..-..++.+...+..+-..|..+..+-.......+ ..+.+++.+......+.+ .-
T Consensus 2 ~~l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~---~i~~~l~kF~~~l~el~~-~~ 77 (200)
T cd07603 2 ASLEQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDS---LVQNCLNKFIQALQEMNN-FH 77 (200)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcH---HHHHHHHHHHHHHHHHHH-HH
Confidence 36788899999999999988876555555555555555555554333111111111 234444444444333332 22
Q ss_pred HHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHH
Q 006276 101 HMLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKF 139 (652)
Q Consensus 101 ~~i~~pL~~f~~~di~~~k-e~Rk~Fek~~~~YD~al~ky 139 (652)
..+.+.++..+..-|..+. +--+.|...+..||.+..+|
T Consensus 78 ~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~y 117 (200)
T cd07603 78 TILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDL 117 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2334444444444444332 33334555555555555555
No 197
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=94.25 E-value=5.3 Score=39.28 Aligned_cols=185 Identities=12% Similarity=0.129 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--------chHHHHHHHHHHhhCCC-CCCCcc-ccCchhHHHHHHHH
Q 006276 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGY--------DGDIAFASALETFGGGH-NDPISV-AFGGPVMTKFTIAL 85 (652)
Q Consensus 16 v~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~--------~~~~~f~~~L~~f~~~~-~d~~~~-~~~g~~L~~f~~~l 85 (652)
+...|++|+.+...++++-..++.+.+-.+++. ..-...-.++..++..+ .|+... +.+..++...|+++
T Consensus 7 ~~~Ve~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~kkEyqkiG~af~~LsqaFe~d~~~~s~~L~~Av~~tG~~y 86 (207)
T cd07669 7 LQDVEERVDVFKAFSKKMDDSVLQLSNVASELVRKHLGGFRKEFQKLGNAFQAISHSFQLDPPYSSEALNNAISHTGRTY 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHH
Confidence 456788888888877777777765544333322 11122333444443321 222111 11234677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHH
Q 006276 86 REIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAF 165 (652)
Q Consensus 86 kel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f 165 (652)
.+|+.....--.+.- .||... |..|+-.=-.|=-+..-+-.|+.|.-...|-....++ ...+....++.-
T Consensus 87 ~~IG~~faeQpk~D~----~pl~d~----L~~Y~GlL~~fPDii~v~K~A~~KvkE~~k~~~e~Km--~~~~~~~v~~R~ 156 (207)
T cd07669 87 EAVGEMFAEQPKNDL----FQMLDT----LSLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRM--DQDEADGIRKRC 156 (207)
T ss_pred HHHHHHHHhcchhhh----hHHHHH----HHHHhCcccCCccHHHHHHHHHHHHHHHHHhhHHhhh--hhhHHHHHHhhh
Confidence 888876544322211 222221 1122211112222222333333332111111011110 122344556656
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006276 166 EQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLH 210 (652)
Q Consensus 166 ~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~ 210 (652)
.-.+.-....|+-+...+..+|-..|-.|++.|..||++-.+-++
T Consensus 157 ~~isya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kle 201 (207)
T cd07669 157 RVVGFALQAEMNHFHQRRELDFKQMMQHYLRQQIIFYQRVSQQLE 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777788887788889999999999999999988666554
No 198
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=93.73 E-value=5.6 Score=39.18 Aligned_cols=186 Identities=13% Similarity=0.137 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--------hHHHHHHHHHHhhCCC-CCCC-ccccCchhHHHHHHHH
Q 006276 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYD--------GDIAFASALETFGGGH-NDPI-SVAFGGPVMTKFTIAL 85 (652)
Q Consensus 16 v~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~--------~~~~f~~~L~~f~~~~-~d~~-~~~~~g~~L~~f~~~l 85 (652)
+...|.+|+.+...++++-..++.+.+-.+++.. .-...-.++..++..+ .|+. ..+.+..++...|..+
T Consensus 7 ~~~VE~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaFe~d~~~~~~~L~~Ai~~tg~~y 86 (210)
T cd07668 7 LVEIEQKCEAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSTSGYQGETDLNDAITEAGKTY 86 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHH
Confidence 4567777777777777777766655443333221 1122233343333221 2221 1112234677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHH
Q 006276 86 REIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAF 165 (652)
Q Consensus 86 kel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f 165 (652)
.+|+.+...--.+.-.-+.+-|..+ +=.=-.|=-+-.-+-.|+.|.-...|.....++ ...+....++.-
T Consensus 87 ~~IG~~faeQpk~Dl~pl~d~L~~Y--------~G~L~~fPDIi~v~KgA~~KvkE~~k~~~egkm--~~~~~~~v~~R~ 156 (210)
T cd07668 87 EEIASLVAEQPKKDLHFLMETNHEY--------KGFLGCFPDIIGAHKGAIEKVKESDKLVATSKI--TLQDKQNMVKRV 156 (210)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHH--------hCccccCccHHHHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHhhh
Confidence 8888865543322222222222211 111111222222222222222111111100111 123455566666
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 166 EQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (652)
Q Consensus 166 ~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~ 211 (652)
.-.++-....|+=+...+..+|-..|-.|+..|..||++-.+.+++
T Consensus 157 dviSya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kl~~ 202 (210)
T cd07668 157 STMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQ 202 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777788888888888899999999999999999887666543
No 199
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=93.39 E-value=8.2 Score=38.01 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHH
Q 006276 19 LEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALE 59 (652)
Q Consensus 19 ~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~ 59 (652)
++.+.+.++..++.+-+.++++...+..+..+...+.....
T Consensus 24 ~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 64 (229)
T PF03114_consen 24 IDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQK 64 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 45566667777777777777776666555444444444443
No 200
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=93.31 E-value=11 Score=38.54 Aligned_cols=67 Identities=6% Similarity=0.061 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHhhCC-CCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006276 50 GDIAFASALETFGGG-HNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHE 117 (652)
Q Consensus 50 ~~~~f~~~L~~f~~~-~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~ 117 (652)
.+..++..|..++.- ......+.....++..|-.-+..+...|..+..++...+ .||..|....-..
T Consensus 34 IE~~YaK~L~kLskk~~~g~~E~GTl~~sw~~~~~E~e~~a~~H~~la~~L~~~~-~~~~~f~~~qk~~ 101 (240)
T cd07672 34 IEEKYGKELLNLSKKKPCGQTEINTLKRSLDVFKQQIDNVGQSHIQLAQTLRDEA-KKMEDFRERQKLA 101 (240)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 456778888776531 111111111134677777777888888888888888754 4888886554433
No 201
>PF15404 PH_4: Pleckstrin homology domain
Probab=93.08 E-value=0.47 Score=46.09 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.3
Q ss_pred CCeeEEEEeCCHHHHHHHHHHHHHH
Q 006276 402 PTKNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 402 ~~r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
+.|+++|-|-|..||+.|+-+|..-
T Consensus 160 ~gks~VF~ARSRqERD~WV~~I~~E 184 (185)
T PF15404_consen 160 SGKSMVFMARSRQERDLWVLAINTE 184 (185)
T ss_pred CCcEEEEEeccHHHHHHHHHHHHhc
Confidence 5688999999999999999998754
No 202
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=92.86 E-value=0.037 Score=61.24 Aligned_cols=99 Identities=19% Similarity=0.349 Sum_probs=62.7
Q ss_pred eeeEEEeccCCCCCCCceeEEEEEecCc-----eEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCC
Q 006276 294 IRQGYLSKRSSNLRGDWKRRFFVLDSRG-----MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD 368 (652)
Q Consensus 294 ~k~G~L~K~~~~~~~~WkrR~f~L~~~g-----~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 368 (652)
-..|||+--+.+.-+.||+|||+|-.-. +..|..++
T Consensus 465 khsgylyaig~nvwkrwkkrffvlvqvsqytfamcsyrekk--------------------------------------- 505 (1218)
T KOG3543|consen 465 KHSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSYREKK--------------------------------------- 505 (1218)
T ss_pred ccceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhhhhcc---------------------------------------
Confidence 3579999887777789999999986321 12221111
Q ss_pred ccccccceeecccceeeeCCCC---CCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHHHhhcc
Q 006276 369 EKSAARHTVNLLTSTIKVDADQ---SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (652)
Q Consensus 369 ~~~~~~~~i~l~~~~vk~~~~~---~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~~~l~~ 433 (652)
..+.+.+.|-+-+|...+.. ..-++-|.-+-.+.+..|..++|.|+--|++||-.|...++..
T Consensus 506 --aepqel~qldgytvdytdp~pglqgg~~ffnavkegdtvifasddeqdr~lwvqamyratgqsykp 571 (1218)
T KOG3543|consen 506 --AEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKEGDTVIFASDDEQDRHLWVQAMYRATGQSYKP 571 (1218)
T ss_pred --cChHHHhhccCeeeccCCCCCccccchHHHHHhccCceEEeccCchhhhhHHHHHHHHhhCCcCCC
Confidence 11122233333343332111 1224557777777889999999999999999998887655543
No 203
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.79 E-value=0.98 Score=41.55 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=31.2
Q ss_pred cccEEEEeCC--eeEEEEeCCHHHHHHHHHHHHHHHHHh
Q 006276 394 RFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIASL 430 (652)
Q Consensus 394 rfcF~I~t~~--r~~~lqA~se~e~~~Wi~ai~~ai~~~ 430 (652)
..+|+|-+.+ .+|+|||.|++..+.|+..|...+..-
T Consensus 80 ~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q 118 (133)
T cd01227 80 TKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQ 118 (133)
T ss_pred ccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 5679988765 579999999999999999998887533
No 204
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.71 E-value=11 Score=37.08 Aligned_cols=184 Identities=11% Similarity=0.054 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--------hHHHHHHHHHHhhCCC-CCC-CccccCchhHHHHHHHH
Q 006276 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYD--------GDIAFASALETFGGGH-NDP-ISVAFGGPVMTKFTIAL 85 (652)
Q Consensus 16 v~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~--------~~~~f~~~L~~f~~~~-~d~-~~~~~~g~~L~~f~~~l 85 (652)
+...|.+|+.+...++++-..++.+.+-.+++.. .-...-.++..++..+ .|+ .....+..++...|..+
T Consensus 7 ~~~VE~kid~f~~F~k~Md~sv~~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaF~~d~~~~s~~L~~Av~~tg~~y 86 (207)
T cd07670 7 LQDVESRIDGFKAFTKKMDESVLQLNHTANEFARKQVTGFKKEYQKVGQSFKGLSQAFELDQQAFSAGLNQAIAFTGEAY 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHccCCcccchHHHHHHHHHHHHH
Confidence 3456777777777766666666654443333211 1122223343333221 222 22222234677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHH
Q 006276 86 REIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAF 165 (652)
Q Consensus 86 kel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f 165 (652)
.+|+.+...--.+.-.-+.+-| ..|+=.=-+|=-+-..+-.|+.|.-.-.|.....++ ...+....++.-
T Consensus 87 ~~IG~~faeQpk~Dl~Pl~d~L--------~~Y~G~L~~fPDii~v~KgA~~KvKE~~k~~~egkm--~~~~~~~v~~R~ 156 (207)
T cd07670 87 EAIGELFAEQPRQDLDPVMDLL--------ALYQGHLANFPDIIHVQKGALTKVKESKKHVEEGKM--ELQKADGIQDRC 156 (207)
T ss_pred HHHHHHHHhcchhhhHHHHHHH--------HHHhCccccCCchHHHhHHHHHHHHHHHHHHHhhcc--chhhHHHHHHHH
Confidence 8888765443222222222211 111111111222222222333331111111000000 012334455555
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 166 EQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELL 209 (652)
Q Consensus 166 ~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~ 209 (652)
.-.++-....|+=.+..+..+|-..|-.|+..|..||+....-+
T Consensus 157 dviSya~~AEm~HFh~~r~~d~k~~M~~yL~~QI~Fyq~v~~kl 200 (207)
T cd07670 157 NIISFATLAEIHHFHKIRVRDFKSQMQHFLQQQIRFFQKVTQKL 200 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777777777778888999999999999998765544
No 205
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=92.58 E-value=18 Score=39.94 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=35.2
Q ss_pred ecccceeeeCCCCCCCcccEEEEeCC-eeEEEEeCCHHHHHHHHHHHHH
Q 006276 378 NLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITG 425 (652)
Q Consensus 378 ~l~~~~vk~~~~~~~rrfcF~I~t~~-r~~~lqA~se~e~~~Wi~ai~~ 425 (652)
.+.+..|....+.+..+..|+|..+. ..+..-++++.|..+|+++++.
T Consensus 356 p~tG~iV~klEdte~~~nafeis~~ti~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 356 PTTGMIVTKLEDTENHRNAFEISGSTIERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred ccceeEEeehhhhhcccccccccccchhheeeccCChHHHHHHHHHhhh
Confidence 34444555444555567789998876 3467889999999999999985
No 206
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=92.26 E-value=23 Score=39.86 Aligned_cols=40 Identities=10% Similarity=0.271 Sum_probs=32.7
Q ss_pred CCCcccEEEEeC-Ce-eEEEEeCCHHHHHHHHHHHHHHHHHh
Q 006276 391 SDLRFCFRIISP-TK-NYTLQAESALDQMDWIEKITGVIASL 430 (652)
Q Consensus 391 ~~rrfcF~I~t~-~r-~~~lqA~se~e~~~Wi~ai~~ai~~~ 430 (652)
+.+++.|-||.. ++ -|.|.+.+++-++.||+++.-|+...
T Consensus 473 ~~ws~~f~lI~tqg~ngl~fy~Kte~~kkkWmeqfema~SNi 514 (865)
T KOG2996|consen 473 ITWSYGFYLIHTQGRNGLEFYCKTEDLKKKWMEQFEMAKSNI 514 (865)
T ss_pred eeeeeeEEEEEEcCCcceEEEEecHHHHHHHHHHHHHHHhcC
Confidence 346889999864 33 59999999999999999998887644
No 207
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=92.02 E-value=25 Score=39.70 Aligned_cols=186 Identities=18% Similarity=0.240 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--------c-hHHHHHHHHHHhhC---CCCCCCccccCchhHHHHH
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGY--------D-GDIAFASALETFGG---GHNDPISVAFGGPVMTKFT 82 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~--------~-~~~~f~~~L~~f~~---~~~d~~~~~~~g~~L~~f~ 82 (652)
-|+.++.+-..|=..+++|..+.+++.+.+.++. . .+...+.+|.+|+. ...|+.
T Consensus 35 fik~~ikdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~~tdde~~ia~slkefa~ll~~ve~er------------- 101 (812)
T KOG1451|consen 35 FIKELIKDGKELISALKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFIATSLKEFASLLNQVEDER------------- 101 (812)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhheeeeccccccchHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 3666777777777778888888888877776654 1 12445677888864 222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------------------------HHHHHHHHHHHHHHHHHH
Q 006276 83 IALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVK-------------------------EARKCFDKASLLYDQARE 137 (652)
Q Consensus 83 ~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~k-------------------------e~Rk~Fek~~~~YD~al~ 137 (652)
++-+....+.|+.-++..-.+.|- ++++.-+.|- ++--+.|+.+..|..+.-
T Consensus 102 --~~~v~~Ase~li~PlekFRkEqIG-~~KE~KkKydKe~ekfy~~LekHLhLSskkesqlqeAD~Qvd~~r~nFfe~SL 178 (812)
T KOG1451|consen 102 --MRMVGNASESLIEPLEKFRKEQIG-TLKEEKKKYDKESEKFYQTLEKHLHLSSKKESQLQEADAQVDTQRKNFFEASL 178 (812)
T ss_pred --HHHHhhhHHHHHhHHHHHHHHHhh-hhHHHHhhhhhhhHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111112222233333333333333 3333333333 333333333333333333
Q ss_pred HHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006276 138 KFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYIN 217 (652)
Q Consensus 138 ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~ 217 (652)
.|.. +...--..-.|++|.-+- .||..+..|.+--...-+.-.....+++-.++
T Consensus 179 ~YV~------------------~vQeVQErk~FefVEpll--------afl~slf~f~h~g~el~qDF~pfk~qlq~s~Q 232 (812)
T KOG1451|consen 179 QYVA------------------EVQEVQERKRFEFVEPLL--------AFLYSLFSFFHVGSELHQDFKPFKDQLQTSVQ 232 (812)
T ss_pred HHHH------------------HHHHHHHHhhhhhHHHHH--------HHHHHHHHHhhhhHHHHhhhhhHHHHHHHHHH
Confidence 3322 111112223346655443 45666667766666555555555667777888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 006276 218 QVLTYAQQSRERSNYEQAALNERMQEYKR 246 (652)
Q Consensus 218 el~~~lq~~r~~~~~~~~~l~~~~~~~~~ 246 (652)
..+.....+|++.+ +|+++|++.-.
T Consensus 233 nTrn~f~~Tr~E~E----eLkKkmke~p~ 257 (812)
T KOG1451|consen 233 NTRNNFNATRAEAE----ELKKKMKESPT 257 (812)
T ss_pred HhhhcccchHHHHH----HHHHHHhhCcc
Confidence 88887778887777 67777765444
No 208
>smart00721 BAR BAR domain.
Probab=91.84 E-value=15 Score=36.77 Aligned_cols=122 Identities=14% Similarity=0.001 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccc---chHHHHHHHHHHhhCCCCCCCc---cccCchhHHHHHHHHHHHHHHHH
Q 006276 20 EESAEVLRERSLKFYKGCRKYTEGLGEGY---DGDIAFASALETFGGGHNDPIS---VAFGGPVMTKFTIALREIGTYKE 93 (652)
Q Consensus 20 E~~le~l~~~l~kl~K~~kk~~~~~~~~~---~~~~~f~~~L~~f~~~~~d~~~---~~~~g~~L~~f~~~lkel~~~~~ 93 (652)
+.+.+.++..++.+-+.+++++..+..+. .+..........|.....+-.. ..........++.++..++....
T Consensus 26 D~~f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (239)
T smart00721 26 DEDFEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEALK 105 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHHHHHHHHH
Confidence 56777888888888888887777655554 3334444443444433222111 01111134446666666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006276 94 VLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSL 142 (652)
Q Consensus 94 ~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~ 142 (652)
.+..-.... ..-...|+..-+.-+...=+.+.+...+++..+--|-+.
T Consensus 106 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~ 153 (239)
T smart00721 106 KLLQVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSA 153 (239)
T ss_pred HHHhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHH
Confidence 544322222 333444444433344444455555666666666665443
No 209
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=91.76 E-value=17 Score=37.12 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCC---------CCCCccccCchhHHHHHHHHH
Q 006276 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGH---------NDPISVAFGGPVMTKFTIALR 86 (652)
Q Consensus 16 v~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~---------~d~~~~~~~g~~L~~f~~~lk 86 (652)
+..++...+.=-+||+.+.+.+++-.+ .+..++..|..+...+ .++.... .+.+.-|...+.
T Consensus 7 ~~~L~~~te~~i~lLed~~~F~r~Rae-------IE~EYs~~L~kL~k~~~~K~~~~~~~~~~~~~--~s~~~~W~~lL~ 77 (241)
T cd07656 7 LKCLDLRTEAQVQLLADLQDYFRRRAE-------IELEYSRSLEKLADRFSSKHKNEKSKREDWSL--LSPVNCWNTLLV 77 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhccccccccccccccCc--CCHHHHHHHHHH
Confidence 334444444444566666666654322 2355667775554211 0111110 123444444444
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHH---------------------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006276 87 E---IGTYKEVLRSQVEHMLNDRLLQY---------------------VNIDLHEVKEARKCFDKASLLYDQAREKFLS 141 (652)
Q Consensus 87 e---l~~~~~~l~~~~~~~i~~pL~~f---------------------~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s 141 (652)
+ +..-+..+...+...++.+|..+ +..-+.++..++|.|+++..+...|..+|..
T Consensus 78 qt~~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ 156 (241)
T cd07656 78 QTKQESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKE 156 (241)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 44445555555555555544333 2233456677888888888777777777643
No 210
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=91.57 E-value=0.25 Score=42.52 Aligned_cols=36 Identities=8% Similarity=0.238 Sum_probs=30.9
Q ss_pred CCCCcccEEEEeCCe-eEEEEeCCHHHHHHHHHHHHH
Q 006276 390 QSDLRFCFRIISPTK-NYTLQAESALDQMDWIEKITG 425 (652)
Q Consensus 390 ~~~rrfcF~I~t~~r-~~~lqA~se~e~~~Wi~ai~~ 425 (652)
-.|+.+.|-|...+. -|+|.|.++.+++.|++.|+.
T Consensus 70 mPD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 70 MPDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred ccCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 346789999998765 599999999999999999874
No 211
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=91.37 E-value=16 Score=36.24 Aligned_cols=158 Identities=13% Similarity=0.138 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHH-HHHHHH
Q 006276 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKE-VLRSQV 99 (652)
Q Consensus 21 ~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~-~l~~~~ 99 (652)
+.|...|.-++++-+.+++++..- ..+++++..++. +-..|+.+++++.-.-. .-.+..
T Consensus 2 ~~l~~~E~ele~l~~~ikkLiK~c-------k~~i~a~k~~~~-------------a~~~F~~~L~~f~~~~~g~~~tDD 61 (207)
T cd07602 2 ENLHEHEAELERTNKAIKELIKEC-------KNLISATKNLSK-------------AQRSFAQTLQNFKFECIGETQTDD 61 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------------HHHHHHHHHHHHHhhccCCcCccc
Confidence 357888899999999999887653 334555544422 34556666655552100 000112
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 100 EHMLNDRLLQYVNIDLHEVKEARK-CFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSN 178 (652)
Q Consensus 100 ~~~i~~pL~~f~~~di~~~ke~Rk-~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~ 178 (652)
+..|..+|..|.+. |.++.+.|. -++.++...-.-|.++.. +.-.++.+.|+.|..++-+|...+..
T Consensus 62 e~~i~~~L~kF~~~-l~ei~~~r~~L~~q~~~~l~~pL~~F~k-----------~dl~~~ke~kk~FdK~se~~~~al~k 129 (207)
T cd07602 62 EIEIAESLKEFGRL-IETVEDERDRMLENAEEQLIEPLEKFRK-----------EQIGGAKEEKKKFDKETEKFCSSLEK 129 (207)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22456777777666 555554443 344555544444444322 22345677888999999888888877
Q ss_pred H---hhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006276 179 V---EAKK-RFEFLEAVSGTMDAHLRYFKQGYELLH 210 (652)
Q Consensus 179 l---~~~k-~~e~le~l~~~~~aq~~ff~~g~e~~~ 210 (652)
. ..++ ..++.+.=.....+...|.+...+++-
T Consensus 130 ~~~lsk~kk~~~~~ea~~~l~~~r~~f~~~~l~Yv~ 165 (207)
T cd07602 130 HLNLSTKKKENQLQEADAQLDMERRNFHQASLEYVF 165 (207)
T ss_pred HhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2333 334444433444444555555556553
No 212
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=91.24 E-value=0.14 Score=59.73 Aligned_cols=96 Identities=21% Similarity=0.340 Sum_probs=61.6
Q ss_pred eeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCccccc
Q 006276 294 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (652)
Q Consensus 294 ~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 373 (652)
-.+|||+|.. +..+.|.+|||+|. +|.+.||...... ....
T Consensus 78 ~~~g~l~k~~-n~~~~~~~r~f~l~-~g~ls~~~~~~~~-------------------------------------~~~~ 118 (799)
T KOG1737|consen 78 SLEGILLKWR-NYSKGPSSRWFVLS-GGLLSYYFDNSFS-------------------------------------KTTC 118 (799)
T ss_pred cccceeeccc-cccCCcccceEEec-CcceeeeccCCcc-------------------------------------ccCC
Confidence 4689999994 55689999999999 8999998765431 1112
Q ss_pred cceeecccceeeeCCCCCCCcccEEEEe-CCeeEEEEeCCHHHHHHHHHHHHHHHHHhhcc
Q 006276 374 RHTVNLLTSTIKVDADQSDLRFCFRIIS-PTKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (652)
Q Consensus 374 ~~~i~l~~~~vk~~~~~~~rrfcF~I~t-~~r~~~lqA~se~e~~~Wi~ai~~ai~~~l~~ 433 (652)
.+.+.+....+. +..... +.+.. ...+++..+.++.++..|+.+++.+-..+...
T Consensus 119 ~~~~~~~~a~i~---~~~~~~--~~~~~~~~q~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (799)
T KOG1737|consen 119 GGGINLVTAWIQ---NGERMD--ICSVDGSCQIYLVELSKKLQRQGWLHALELAPLIAVEQ 174 (799)
T ss_pred CCcccccccccc---cCCCcc--cchhhcccchhhhhhhHHHhhcchhhhhhhccchhhhc
Confidence 223344333332 111112 22221 24678999999999999999998885444443
No 213
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=90.02 E-value=29 Score=36.93 Aligned_cols=140 Identities=12% Similarity=0.201 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHH-------HHHHHHHhcc
Q 006276 78 MTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNID--------LHEVKEARKCFDKASLLY-------DQAREKFLSL 142 (652)
Q Consensus 78 L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~d--------i~~~ke~Rk~Fek~~~~Y-------D~al~ky~s~ 142 (652)
-.-|-.....|...+..+-+++.+...+.+..+.++. +++.+++-..|+|+|.-+ +++...|.+.
T Consensus 75 W~~~~teaerlS~lH~evKd~L~nd~~e~iktwqK~a~H~~vm~G~KE~ke~ED~FrKAQKPWaK~l~evE~ak~~yh~a 154 (472)
T KOG2856|consen 75 WNAFMTEAERLSELHLEVKDNLINDDVEKIKTWQKEAYHKQVMGGFKETKEAEDGFRKAQKPWAKLLKEVEAAKKAYHAA 154 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 3444444455666666666666666666666665544 346667777888887544 3444444333
Q ss_pred ccCC----------------ChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006276 143 RKGT----------------KTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGY 206 (652)
Q Consensus 143 ~K~k----------------~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~ 206 (652)
-|.- .|+.+.-....+...+..-++.--+|-..|.+|..-.. -||.++..-|.+|-
T Consensus 155 ck~EksA~~re~n~kaDsSvspeq~kKlqdrveK~k~evqktkekYektl~el~~yt~--------~YmE~MeqvFe~CQ 226 (472)
T KOG2856|consen 155 CKEEKSALTREQNAKADSSVSPEQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTP--------VYMEDMEQVFEQCQ 226 (472)
T ss_pred HHHHHHHHHHHhccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------HHHHHHHHHHHHHH
Confidence 2211 23333223333444444444455555555665543222 24444555555554
Q ss_pred HHHhhhHHHHHHHHHHHHH
Q 006276 207 ELLHQMEPYINQVLTYAQQ 225 (652)
Q Consensus 207 e~~~~l~~~l~el~~~lq~ 225 (652)
+.-.+=-.|++++...+++
T Consensus 227 ~fE~~Rl~Ffkeil~~v~~ 245 (472)
T KOG2856|consen 227 QFEEKRLQFFKEILLKVQR 245 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4443334455555544443
No 214
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=89.78 E-value=23 Score=35.42 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (652)
Q Consensus 22 ~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~ 101 (652)
+|..|+..++.+-..+.++......+..+...+..+...|+.+..+--.... +..-...+.++..+......+.+ .-.
T Consensus 3 ~v~~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~-~~~~~~i~~~l~kF~~~l~El~~-~~~ 80 (215)
T cd07604 3 TVGALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKAL-SREEEDLGAAFLKFSVFTKELAA-LFK 80 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4667778887777777777665555554555666666666554332111110 00111344555555554444432 223
Q ss_pred HHHHHHHHHHHhhhHHHH-HHHHHH-HHHHHHHHHHHHHH
Q 006276 102 MLNDRLLQYVNIDLHEVK-EARKCF-DKASLLYDQAREKF 139 (652)
Q Consensus 102 ~i~~pL~~f~~~di~~~k-e~Rk~F-ek~~~~YD~al~ky 139 (652)
.+...+++-+..-|..+. +-=+.+ ......||.+...|
T Consensus 81 ~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~y 120 (215)
T cd07604 81 NLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDY 120 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334444444444343332 112223 25555566555544
No 215
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=89.65 E-value=0.5 Score=54.62 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=39.6
Q ss_pred CCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHHHhhccCCC
Q 006276 392 DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAP 436 (652)
Q Consensus 392 ~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~~~l~~~~~ 436 (652)
.-++||.|.+..+.++..|.+..+.+.|+..++.+|..+..+.++
T Consensus 809 s~p~~~ti~~~qk~i~vsast~~~sk~~~~~r~~~i~~~~k~~~~ 853 (1036)
T KOG3531|consen 809 SVPHCFTISGAQKQIYVSASTRRESKKWEFDRRKAIDLAPKKSSP 853 (1036)
T ss_pred cCCceEEEeccceEEEEeccchhhhhhhhhccchhhhhccccCCC
Confidence 457999999999999999999999999999999999877766544
No 216
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=88.94 E-value=49 Score=40.45 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCC------C---CCCCccccCchhHHHHHHH
Q 006276 14 KQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG------H---NDPISVAFGGPVMTKFTIA 84 (652)
Q Consensus 14 asv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~------~---~d~~~~~~~g~~L~~f~~~ 84 (652)
+.++.++++.+.-++|-+++.+.++.++++|.+.-.++..-..+++..... . .++.+.+ ....+..-+.-
T Consensus 1542 ~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~-aE~~~~~a~q~ 1620 (1758)
T KOG0994|consen 1542 ARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAA-AEKLATSATQQ 1620 (1758)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 345667788888888888888888888888877766665555555332110 0 0111100 01234445555
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 006276 85 LREIGTYKEVLRSQVE--HMLNDRLLQYVNIDLHEVKEARKCFDKASLLYD 133 (652)
Q Consensus 85 lkel~~~~~~l~~~~~--~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD 133 (652)
+.+|+...+.|..... +.-...+++.+......+.++++.++..+..|+
T Consensus 1621 ~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~ 1671 (1758)
T KOG0994|consen 1621 LGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYE 1671 (1758)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444422111 111233444444445556677777775555554
No 217
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=88.83 E-value=27 Score=34.79 Aligned_cols=120 Identities=10% Similarity=0.085 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHhccccCCChhhHhHHH
Q 006276 77 VMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARK-CFDKASLLYDQAREKFLSLRKGTKTDVAAILE 155 (652)
Q Consensus 77 ~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk-~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~ 155 (652)
+-..|+..+.++...+-.+.. -+..+.++|+.|.+. |.++.+.|. -++.++...-..+.++.. ++-
T Consensus 38 a~~~~~~~l~~~~~~~f~~~~-dDe~i~~~L~kFs~~-L~El~~~~~~L~~q~~~sl~~pL~~F~k-----------edL 104 (215)
T cd07631 38 ATHLTSKLLKEYEKQRFPLGG-DDEVMSSTLQQFSKV-IDELSSCHAVLSTQLADAMMFPITQFKE-----------RDL 104 (215)
T ss_pred HHHHHHHHHHHHHHhcCCcCC-CcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Confidence 456677777777765444443 344578888888877 666654443 455666666555555432 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhHH-H-HHHHHHHHHHHHHHHHHHHH
Q 006276 156 EELHSARSAFEQARFSLVTALSNV---EAKKRFEFL-E-AVSGTMDAHLRYFKQGYELL 209 (652)
Q Consensus 156 ~eL~~~Rk~f~~aslDyv~~l~~l---~~~k~~e~l-e-~l~~~~~aq~~ff~~g~e~~ 209 (652)
.+..++|+.|..++-+|...+... ..++..+.+ + ..-....+...|.+-..+++
T Consensus 105 ~~~Ke~KK~FdK~Se~~d~Al~K~a~lsk~K~~E~~~eea~~~v~~tR~~F~~~aLdYv 163 (215)
T cd07631 105 KEILTLKEVFQIASNDHDAAINRYSRLSKRRENEKVKYEVTEDVYTSRKKQHQTMMHYF 163 (215)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999998887763 344445544 1 22222234555555555554
No 218
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.15 E-value=2.7 Score=37.50 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=28.3
Q ss_pred CCcccEEEEeCC----eeEEEEeCCHHHHHHHHHHHHH
Q 006276 392 DLRFCFRIISPT----KNYTLQAESALDQMDWIEKITG 425 (652)
Q Consensus 392 ~rrfcF~I~t~~----r~~~lqA~se~e~~~Wi~ai~~ 425 (652)
....||.|+... +++.|-|.|+++++.|+..|+.
T Consensus 77 ~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 77 LEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 335799999754 4799999999999999998863
No 219
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.31 E-value=38 Score=33.87 Aligned_cols=125 Identities=14% Similarity=0.137 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (652)
Q Consensus 22 ~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~ 101 (652)
-|+.+|.-...|-+.+++++..... +.++...++. +-..|+.+++++....-.+. .-+.
T Consensus 3 ~l~~~E~d~~~L~~~~~kL~K~c~~-------~~~a~~~~~~-------------A~~~F~~~L~ef~~~~f~~~-~dDe 61 (215)
T cd07601 3 LLNVFEEDALQLSSYMNQLLQACKR-------VYDAQNELKS-------------ATQALSKKLGEYEKQKFELG-RDDE 61 (215)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-------------HHHHHHHHHHHHHhhccCCC-CCcH
Confidence 4677888888888888887775444 4444444322 34556666666654311111 2233
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 102 MLNDRLLQYVNIDLHEVKEARKCF-DKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNV 179 (652)
Q Consensus 102 ~i~~pL~~f~~~di~~~ke~Rk~F-ek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l 179 (652)
.++.+|.+|... |.++-+.|..+ +.++...-.-|.++. .++-.+..+.|+.|..++-+|...+...
T Consensus 62 ~~~~~l~kFs~~-l~El~~~~~~L~~q~~~~l~~pL~~F~-----------k~Dl~~vKe~kK~FdK~s~~~d~al~K~ 128 (215)
T cd07601 62 ILVSTLKQFSKV-VDELSTMHSTLSSQLADTVLHPISQFM-----------ESDLAEIMTLKELFKAASNDHDGVLSKY 128 (215)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444566776655 55555444433 222232323333322 2233356678888888888888766553
No 220
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.20 E-value=40 Score=33.99 Aligned_cols=172 Identities=13% Similarity=0.170 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHM 102 (652)
Q Consensus 23 le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~ 102 (652)
.+.-+..+..+-+.++++...+.++..+...+..+-..++..+.+-. ...+.+.+...++.+ ..+...++.+
T Consensus 13 fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~~~-~~~~~~~~~~~~e~y-------~~~~~~l~~~ 84 (225)
T cd07590 13 LEREVQKLQQLESTTKKLYKDMKKYIEAVLALSKAEQRLSQDLASGP-LCEDNDELRNLVEAL-------DSVTTQLDKT 84 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-cCCCChHHHHHHHHH-------HHHHHHHHHH
Confidence 34444577778888888877766665555666666555555444422 122222222222222 3333344433
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHHHHHhccccC----CChhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 103 LNDRLLQYVNIDLHEVKEARKCFDKAS---LLYDQAREKFLSLRKG----TKTDVAAILEEELHSARSAFEQARFSLVTA 175 (652)
Q Consensus 103 i~~pL~~f~~~di~~~ke~Rk~Fek~~---~~YD~al~ky~s~~K~----k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~ 175 (652)
+..-+..+-+.-|.|+++....|-.+. .+-+..+.-|-+...+ .+-..-......|..+...+..+.-+|- .
T Consensus 85 ~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye-~ 163 (225)
T cd07590 85 VQELVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKALAAARADFE-K 163 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccCChhHHHHHHHHHHHHHHHHHHH-H
Confidence 322233333444556665555555533 3334444444332211 1111111113678888888877775553 2
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006276 176 LSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLH 210 (652)
Q Consensus 176 l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~ 210 (652)
+|. ++++.|=.++..-..||.-..+.+-
T Consensus 164 ~N~-------~L~~ELP~l~~~r~~f~~p~Fqsl~ 191 (225)
T cd07590 164 QNI-------KLLEELPKFYNGRTDYFQPCFEALI 191 (225)
T ss_pred HHH-------HHHHHhHHHHHHccHHHHHHHHHHH
Confidence 333 5667777777777888876666553
No 221
>PF15408 PH_7: Pleckstrin homology domain
Probab=85.77 E-value=0.34 Score=40.31 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=25.4
Q ss_pred ccEEEEeCCe-eEEEEeCCHHHHHHHHHHHHHH
Q 006276 395 FCFRIISPTK-NYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 395 fcF~I~t~~r-~~~lqA~se~e~~~Wi~ai~~a 426 (652)
|.|-..++++ ..-+-|+|.+-++.||++|+.-
T Consensus 64 ~G~L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~~ 96 (104)
T PF15408_consen 64 FGFLMYSPSRRHVQCFASSKKVCQSWIQVMNSP 96 (104)
T ss_pred EEEEEecCCcchhhhhhhHHHHHHHHHHHhcCh
Confidence 5666667764 4778899999999999998654
No 222
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=85.57 E-value=7.7 Score=34.36 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=33.6
Q ss_pred CCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006276 391 SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (652)
Q Consensus 391 ~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~ 428 (652)
.+.++.|.|.|..+.+.|.++|..+.+.|.+.|+.-..
T Consensus 67 ~~~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~ 104 (110)
T PF08458_consen 67 GEERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLS 104 (110)
T ss_pred CceEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHH
Confidence 35678999999999999999999999999998876654
No 223
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=85.56 E-value=47 Score=34.17 Aligned_cols=83 Identities=7% Similarity=0.033 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhC---CCCC-CCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 28 ERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG---GHND-PISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHML 103 (652)
Q Consensus 28 ~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~---~~~d-~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i 103 (652)
++++.=.+.|+.+..-+.+--..++.++..|..++. +..+ .-.+..+-.++.-|-.-...+...|..|...+..-.
T Consensus 12 kR~~DG~~~C~dl~~~~~ERA~IE~~Yak~L~~~akkw~~~ie~gpeyGTl~~aw~~~~~Eae~~s~~H~~l~~~L~~e~ 91 (258)
T cd07679 12 KRIDDGHRLCNDLMNCLHERARIEKVYAQQLTEWAKRWRQLVEKGPQYGTVEKAWCALMSEAEKVSELHLEVKASLMNED 91 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555655544443333345778888877653 2222 111211122344444444555555555555444444
Q ss_pred HHHHHHH
Q 006276 104 NDRLLQY 110 (652)
Q Consensus 104 ~~pL~~f 110 (652)
..++.++
T Consensus 92 ~e~ir~w 98 (258)
T cd07679 92 FEKIKNW 98 (258)
T ss_pred HHHHHHH
Confidence 4555443
No 224
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=85.26 E-value=42 Score=33.35 Aligned_cols=157 Identities=15% Similarity=0.163 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHH-HHHHHHHH
Q 006276 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKE-VLRSQVEH 101 (652)
Q Consensus 23 le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~-~l~~~~~~ 101 (652)
+..=|.-|+++.|..++++..- ..+++++..++. +-..|+.+++++..... .-.+..+.
T Consensus 4 l~~~e~~l~~t~~~ik~liK~c-------~~li~A~k~~~~-------------a~~~Fa~sL~~f~~~~igd~~tDde~ 63 (207)
T cd07634 4 LQCHEIELERTNKFIKELIKDG-------SLLIGALRNLSM-------------AVQKFSQSLQDFQFECIGDAETDDEI 63 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------------HHHHHHHHHHHHHhhccCCcccccHH
Confidence 4445667888888888776542 335555544422 33455555555542100 00001111
Q ss_pred HHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 006276 102 MLNDRLLQYVNIDLHEVKEA-RKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSN-V 179 (652)
Q Consensus 102 ~i~~pL~~f~~~di~~~ke~-Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~-l 179 (652)
.+...+..|-.- |..+.+. ..-++.++...-..|.++.. +.-....++||.|.+++-+|...+.. +
T Consensus 64 ~i~~~l~~Fs~~-l~el~~~~~~L~~~~~~~l~~pL~~f~k-----------~dl~~vKe~kK~FDK~se~y~~aleK~l 131 (207)
T cd07634 64 SIAQSLKEFARL-LIAVEEERRRLIQNANDVLIAPLEKFRK-----------EQIGAAKDGKKKFDKESEKYYSILEKHL 131 (207)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHccchhHHHhHHHHHHHHHH
Confidence 344444444333 3333322 23345555544444444432 22234567888888888888877766 2
Q ss_pred h--hhh-hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 180 E--AKK-RFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (652)
Q Consensus 180 ~--~~k-~~e~le~l~~~~~aq~~ff~~g~e~~~~ 211 (652)
+ .++ ..++-+.-...-.+...|.+...+++-.
T Consensus 132 ~l~~~kk~~~~~ea~~~l~~~R~~F~~~~ldYv~~ 166 (207)
T cd07634 132 NLSAKKKESHLQRADTQIDREHQNFYEASLEYVFK 166 (207)
T ss_pred hccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222 2233333334444444555666666543
No 225
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=83.93 E-value=56 Score=37.28 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=26.3
Q ss_pred CCCcccEEEEeC----Ce--eEEEEeCCHHHHHHHHHHH
Q 006276 391 SDLRFCFRIISP----TK--NYTLQAESALDQMDWIEKI 423 (652)
Q Consensus 391 ~~rrfcF~I~t~----~r--~~~lqA~se~e~~~Wi~ai 423 (652)
..+++.|.+... ++ .+.|+|+|+.||..||.|+
T Consensus 552 ~~~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al 590 (695)
T KOG3523|consen 552 SSRPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISAL 590 (695)
T ss_pred ccccceEEEehhhccCCCceeeeecCCchHHHHHHHHhc
Confidence 345788887742 22 4999999999999999987
No 226
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.84 E-value=47 Score=32.83 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHH-HHHHHHHHHH
Q 006276 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTY-KEVLRSQVEH 101 (652)
Q Consensus 23 le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~-~~~l~~~~~~ 101 (652)
+..=|.-|+++.+.+++++..-..+..+...+..+-..|.. +++++.-. .-.-.+..+.
T Consensus 4 l~~hE~ele~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~--------------------~L~df~f~~igd~~tdde~ 63 (207)
T cd07633 4 LKCYEQELERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQ--------------------TLQSFQFDFIGDTLTDDEI 63 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHhhcCCCcccchHH
Confidence 44456678888888887766433333334444444444444 44433321 1111222334
Q ss_pred HHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 006276 102 MLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNV- 179 (652)
Q Consensus 102 ~i~~pL~~f~~~di~~~k-e~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l- 179 (652)
.+.+.|..|-.. |..+. +...-++.++..+-.-|.++.. |.--...+.||.|.+.+-+|...|..-
T Consensus 64 ~I~~sL~~F~~~-L~~ie~~r~~l~d~aq~s~~~~L~~F~K-----------edi~~~Ke~KK~FdK~se~~~~aL~k~a 131 (207)
T cd07633 64 NIAESFKEFAEL-LQEVEEERMMMVQNASDLLIKPLENFRK-----------EQIGFTKERKKKFEKDSEKFYSLLDRHV 131 (207)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhhhhhhhHHHHHHHHHh
Confidence 455555555544 33333 2234456666655555555432 222345667777777777777766552
Q ss_pred h--hh-hhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006276 180 E--AK-KRFEFLEAVSGTMDAHLRYFKQGYELLH 210 (652)
Q Consensus 180 ~--~~-k~~e~le~l~~~~~aq~~ff~~g~e~~~ 210 (652)
+ .+ +..++-+.-...-.....|++.+.++.-
T Consensus 132 ~~s~k~K~~e~eEA~~~L~~~r~~F~~~aLdYV~ 165 (207)
T cd07633 132 NLSSKKKESQLQEADLQVDKERQNFYESSLEYVY 165 (207)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22 3445555555555556666677777654
No 227
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=83.43 E-value=41 Score=31.74 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHH
Q 006276 104 NDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKF 139 (652)
Q Consensus 104 ~~pL~~f~~~di~~~k-e~Rk~Fek~~~~YD~al~ky 139 (652)
...+...+-.-|..+. ..-+.+.....+|+.+...|
T Consensus 74 ~~~~~~~v~~pL~~~~~~~~~~~~~~~k~~~~~~~~y 110 (194)
T cd07307 74 EQKLENKVIEPLKEYLKKDLKEIKKRRKKLDKARLDY 110 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344443 33344444445555444444
No 228
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=82.15 E-value=44 Score=32.75 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 006276 23 AEVLRERSLKFYKGCRKYTEGLG 45 (652)
Q Consensus 23 le~l~~~l~kl~K~~kk~~~~~~ 45 (652)
+..+....+.+.+.++.+.+.+.
T Consensus 5 ~~el~~~~~~~~~~~~~~~~~l~ 27 (204)
T PF04740_consen 5 VSELHSQAESTNSSLKELKEQLE 27 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555433
No 229
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=79.29 E-value=2.7 Score=38.83 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=23.6
Q ss_pred cccEEEEeCC---eeEEEEeCCHHHHHHHHHHHHHH
Q 006276 394 RFCFRIISPT---KNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 394 rfcF~I~t~~---r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
-|-|.|...+ ..|+|.|+|+.+|+.|++.|..+
T Consensus 99 ~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 99 LYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp EEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred ccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 3666666554 35899999999999999999765
No 230
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=78.38 E-value=88 Score=32.39 Aligned_cols=93 Identities=9% Similarity=-0.005 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCC-------CC---CCccccCchhHHHHHHHHHHH
Q 006276 19 LEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGH-------ND---PISVAFGGPVMTKFTIALREI 88 (652)
Q Consensus 19 ~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~-------~d---~~~~~~~g~~L~~f~~~lkel 88 (652)
|-+|+..|..|.+.=++....+..=..+--..+..++..|..+...+ .+ +..+...-.+...|-..+..+
T Consensus 3 ~~Eq~~~L~~~~~~~i~lLedi~~F~reRa~IE~EYa~~L~kLakky~~Kk~~~~~~~~~~~~~s~~~~W~~~L~qt~~~ 82 (264)
T cd07654 3 HLEQLSKLQAKHQTECDLLEDIRTYSQKKAAIEREYGQALQKLASQFLKREWPGSGELKPEDDRSGYTVWGAWLEGLDAV 82 (264)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccccchHHHHHHHHHHHHHHH
Confidence 34666777777555554444433222222223466777776553211 11 111100011334444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006276 89 GTYKEVLRSQVEHMLNDRLLQYV 111 (652)
Q Consensus 89 ~~~~~~l~~~~~~~i~~pL~~f~ 111 (652)
..-+..+..++...+..+|..+.
T Consensus 83 A~~~~~~ae~l~~~i~~~l~~l~ 105 (264)
T cd07654 83 AQSRQNRCEAYRRYISEPAKTGR 105 (264)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH
Confidence 55666777777777777765544
No 231
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=78.10 E-value=1.3e+02 Score=34.24 Aligned_cols=193 Identities=12% Similarity=0.169 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYK 92 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~ 92 (652)
+++|..+..+.+.+.+.-..+ +.|+...+.+++. -..|...|..++..+.+-+. --...+.-++.--...
T Consensus 3 ~~si~dy~~e~~~~~~Lh~~i-~~cd~~L~~le~~---L~~Fq~~L~~iS~eI~~LQ~------~S~~l~~~L~Nrk~~~ 72 (508)
T PF04129_consen 3 RESIQDYLKESENFADLHNQI-QECDSILESLEEM---LSNFQNDLGSISSEIRSLQE------RSSSLNVKLKNRKAVE 72 (508)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHH
Confidence 467888888888887766666 6677666654443 24555555555443221110 0011111111111112
Q ss_pred HHHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHH
Q 006276 93 EVLRSQVEHMLNDR--LLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARF 170 (652)
Q Consensus 93 ~~l~~~~~~~i~~p--L~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~asl 170 (652)
..|..-++..++.| +...+++++.+ .|-........-+..+..-.+.++.....+....|...|..=....-
T Consensus 73 ~~L~~~i~~i~ipP~lI~~I~~~~v~e------~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir 146 (508)
T PF04129_consen 73 EKLSPFIDDIVIPPDLIRSICEGPVNE------QYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIR 146 (508)
T ss_pred HHHHHHHHHHcCCHHHHHhHhcCCCCH------HHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHH
Confidence 22222222333322 44445555544 22222221111111111111122333345555666666655555555
Q ss_pred HH-HHHHHHHhhh-hhhhHHHH-HHHHHHHHHHHH-HHHHHHHhhh-HHHHHHHHHH
Q 006276 171 SL-VTALSNVEAK-KRFEFLEA-VSGTMDAHLRYF-KQGYELLHQM-EPYINQVLTY 222 (652)
Q Consensus 171 Dy-v~~l~~l~~~-k~~e~le~-l~~~~~aq~~ff-~~g~e~~~~l-~~~l~el~~~ 222 (652)
|| +.+|..+... -...+++. |+.+ ...+.|- +...++..++ ..|++.|...
T Consensus 147 ~fl~~kI~~lr~~~tn~q~iQ~~LLk~-~~~~~FL~~~~~~~a~El~~~Yv~tM~~~ 202 (508)
T PF04129_consen 147 DFLLKKIKSLRKPKTNSQIIQQVLLKY-KELFQFLKKHSPELAKELRQAYVETMSWY 202 (508)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHhh-HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 65 4567777653 35566664 3332 3333443 3333444554 4555555443
No 232
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=76.46 E-value=85 Score=31.23 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCC
Q 006276 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGH 65 (652)
Q Consensus 23 le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~ 65 (652)
|..++.-|+-+-....++......+..+...++++-..|..+.
T Consensus 4 v~~~ee~l~~~e~~L~Kl~K~~kam~~SG~~yv~n~~~f~~~l 46 (215)
T cd07641 4 VNVLEEALDQDRTALQKVKKSVKAIYNSGQDHVQNEENYAQAL 46 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444444443332223333444444444444443
No 233
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=75.69 E-value=1.6e+02 Score=34.03 Aligned_cols=206 Identities=10% Similarity=0.104 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCC-CCccccCchhHHHHHHHHHHHHHH
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHND-PISVAFGGPVMTKFTIALREIGTY 91 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d-~~~~~~~g~~L~~f~~~lkel~~~ 91 (652)
|..++..++.|+.++..++.+.+....+...-.+.......+-.....+.....+ ...+ |+++..+-.-+.+++..
T Consensus 104 ~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~---G~a~~~le~~l~~~e~~ 180 (569)
T PRK04778 104 KHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSF---GPALDELEKQLENLEEE 180 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc---cchHHHHHHHHHHHHHH
Confidence 3456667777777777777777666665554222211112222222222221111 2222 45666666666666665
Q ss_pred HHHHHHHH-----------HHHH---HHHHHHHHHhhhH-HHHH----HHHHHHHHHHHHHHHHHHHhccccCCChhhHh
Q 006276 92 KEVLRSQV-----------EHML---NDRLLQYVNIDLH-EVKE----ARKCFDKASLLYDQAREKFLSLRKGTKTDVAA 152 (652)
Q Consensus 92 ~~~l~~~~-----------~~~i---~~pL~~f~~~di~-~~ke----~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~ 152 (652)
...+..-. -..+ +.-|...+.. |. -+++ .-.+++..+.-|..+....-.+....-+..+.
T Consensus 181 f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~-iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~ 259 (569)
T PRK04778 181 FSQFVELTESGDYVEAREILDQLEEELAALEQIMEE-IPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQ 259 (569)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHH
Confidence 55542210 0111 1223333333 31 2223 34566777788888777766666554445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006276 153 ILEEELHSARSAFEQARFSLVTA-LSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSR 227 (652)
Q Consensus 153 E~~~eL~~~Rk~f~~aslDyv~~-l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~el~~~lq~~r 227 (652)
....++..+...-...-++-+.. +..++ +-++.|.+-+..-..-.+........+..++..+....+.+.
T Consensus 260 ~l~~~i~~~~~~l~~l~l~~~~~~~~~i~-----~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~ 330 (569)
T PRK04778 260 DLKEQIDENLALLEELDLDEAEEKNEEIQ-----ERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELK 330 (569)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 55555555544443333333322 22222 224555555555555555555555666666665555444433
No 234
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=75.58 E-value=1e+02 Score=31.65 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhH-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 113 IDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVA-----------AILEEELHSARSAFEQARFSLVTALSNVEA 181 (652)
Q Consensus 113 ~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~-----------~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~ 181 (652)
..+..+..+|++|+..-.+++.+..... ..++.+++ +..-..+...|..|....-..+..+++++.
T Consensus 120 ~~~~~l~KaK~~Y~~~c~e~e~~~~~~~---s~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe 196 (261)
T cd07648 120 TTTAALQKAKEAYHARCLELERLRRENA---SPKEIEKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEE 196 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677899999999988887743321 12222211 112223556666666666666666666654
Q ss_pred h
Q 006276 182 K 182 (652)
Q Consensus 182 ~ 182 (652)
.
T Consensus 197 ~ 197 (261)
T cd07648 197 S 197 (261)
T ss_pred H
Confidence 4
No 235
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=74.37 E-value=1e+02 Score=31.21 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=22.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 108 LQYVNIDLHEVKEARKCFDKASLLYDQAREKF 139 (652)
Q Consensus 108 ~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky 139 (652)
+.-...-.+.+..+|+.|...-.+.|.+....
T Consensus 113 ~K~~~~~~~~~~kaKk~y~~~cke~e~~~~~~ 144 (233)
T cd07649 113 RKQLASRYAAVEKARKALLERQKDLEGKTQQL 144 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333446677889999999999998875554
No 236
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=74.32 E-value=1.7e+02 Score=33.73 Aligned_cols=103 Identities=14% Similarity=0.153 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHH
Q 006276 120 EARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSN-VEAKKRFEFLEAVSGTMDAH 198 (652)
Q Consensus 120 e~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~-l~~~k~~e~le~l~~~~~aq 198 (652)
+.-.+++..+..|..+...--.+....-++.+.....++..+...-...-++=+....+ +. +-++.|.+.|...
T Consensus 223 ~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~-----~~Id~lYd~le~E 297 (560)
T PF06160_consen 223 EFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIE-----ERIDQLYDILEKE 297 (560)
T ss_pred HhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 44556677777777777766666654445555666666666666554444444433222 22 2356667777777
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006276 199 LRYFKQGYELLHQMEPYINQVLTYAQQSR 227 (652)
Q Consensus 199 ~~ff~~g~e~~~~l~~~l~el~~~lq~~r 227 (652)
..-.+...+.++.+..++..+......+.
T Consensus 298 ~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~ 326 (560)
T PF06160_consen 298 VEAKKYVEKNLKELYEYLEHAKEQNKELK 326 (560)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666655444443
No 237
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.54 E-value=1e+02 Score=30.63 Aligned_cols=151 Identities=15% Similarity=0.212 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (652)
Q Consensus 22 ~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~ 101 (652)
+|+.+|.-+..+-..+.+++..... +.+++..+.. .-..|+.++.++... .-+.
T Consensus 2 ~i~~~E~~~~~l~~~~~Kl~K~~~~-------~~~a~~~~~~-------------a~~~Fa~~L~~f~~~------~dD~ 55 (202)
T cd07606 2 QLQELEGSADELRDRSLKLYKGCRK-------YRDALGEAYD-------------GDSAFAESLEEFGGG------HDDP 55 (202)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-------------HHHHHHHHHHHhcCC------CCCh
Confidence 5788888888888888887776444 3455443322 224455555555421 1112
Q ss_pred HHH----HHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 102 MLN----DRLLQYVNIDLHEVKEARKC-FDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTAL 176 (652)
Q Consensus 102 ~i~----~pL~~f~~~di~~~ke~Rk~-Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l 176 (652)
.++ .+|..|... |+++...|.. ++.++...-.-|.++. .++=.++.++|+.|.+++-+|...+
T Consensus 56 ~~~a~gg~~l~kF~~~-l~ei~~~~~~L~~q~~~~l~~pL~~F~-----------k~Dl~~vKe~kK~FdK~s~~yd~al 123 (202)
T cd07606 56 ISVAVGGPVMTKFTSA-LREIGSYKEVLRSQVEHMLNDRLAQFA-----------DTDLQEVKDARRRFDKASLDYEQAR 123 (202)
T ss_pred HHHhccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 356666555 5555444433 2333333333333322 2333356688899999998888766
Q ss_pred HHH---hhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHh
Q 006276 177 SNV---EAKKRFEFLEAVSGTMD-AHLRYFKQGYELLH 210 (652)
Q Consensus 177 ~~l---~~~k~~e~le~l~~~~~-aq~~ff~~g~e~~~ 210 (652)
... ..+++-+.++..-.-+. +-..|.+...+++-
T Consensus 124 ~K~~~l~k~~k~~~~~ea~~~l~~~R~~F~~~~ldyv~ 161 (202)
T cd07606 124 SKFLSLTKDAKPEILAAAEEDLGTTRSAFETARFDLMN 161 (202)
T ss_pred HHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 553 22233344554443333 33344455555543
No 238
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=73.13 E-value=1.2e+02 Score=31.38 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=25.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006276 107 LLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLS 141 (652)
Q Consensus 107 L~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s 141 (652)
|+.=+..-++++...||.|.+...+=..|..||..
T Consensus 121 lQ~eL~~~~keL~ksKK~Y~~~~~ea~~A~~K~~e 155 (263)
T cd07678 121 AQAELLETVKELSKSKKLYGQLERVSEVAKEKAAD 155 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444567778888888888888888888863
No 239
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.31 E-value=1.6e+02 Score=32.61 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 186 EFLEAVSGTMDAHLRYFKQGYELL 209 (652)
Q Consensus 186 e~le~l~~~~~aq~~ff~~g~e~~ 209 (652)
++++.|=.++.....||.-.++.+
T Consensus 179 ~L~eELP~L~~sRv~f~vp~Fqsl 202 (460)
T KOG3771|consen 179 ELLEELPALYSSRVGFFVPTFQSL 202 (460)
T ss_pred HHHHHHHHHHHhhhhhhcchHHHH
Confidence 444455555555555554444433
No 240
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=71.54 E-value=3 Score=29.83 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=28.1
Q ss_pred CCccccCCCCCCCceeeccceeeeccchhh-hcc
Q 006276 512 NDRCADCGAPEPDWASLNLGVLVCIECSGV-HRN 544 (652)
Q Consensus 512 N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~-Hr~ 544 (652)
+..|..|+.....+-+.+-++++|..|... |+.
T Consensus 3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~ 36 (42)
T PF00643_consen 3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG 36 (42)
T ss_dssp SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT
T ss_pred CccCccCCccceEEEecCCCCccCccCCCCCCCC
Confidence 568999998778899999999999999987 876
No 241
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=70.17 E-value=2.8e+02 Score=34.43 Aligned_cols=11 Identities=9% Similarity=0.102 Sum_probs=4.8
Q ss_pred HHHHHHHHHhh
Q 006276 52 IAFASALETFG 62 (652)
Q Consensus 52 ~~f~~~L~~f~ 62 (652)
+.++..+.+|-
T Consensus 1474 ~~Li~~v~~Fl 1484 (1758)
T KOG0994|consen 1474 RNLIQQVRDFL 1484 (1758)
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 242
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=69.79 E-value=2.9e+02 Score=34.41 Aligned_cols=43 Identities=28% Similarity=0.395 Sum_probs=34.0
Q ss_pred CCcccEEEEeCC---eeEEEEeCCHHHHHHHHHHHHHHHHHhhccC
Q 006276 392 DLRFCFRIISPT---KNYTLQAESALDQMDWIEKITGVIASLLSSQ 434 (652)
Q Consensus 392 ~rrfcF~I~t~~---r~~~lqA~se~e~~~Wi~ai~~ai~~~l~~~ 434 (652)
|.+--|-|.+.. ..|.|-|.|..|++.||..|+.+|..+-.+.
T Consensus 683 d~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~~ 728 (1167)
T KOG3520|consen 683 DEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRNE 728 (1167)
T ss_pred cccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCccc
Confidence 345456666642 5799999999999999999999998776554
No 243
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.73 E-value=1.2e+02 Score=30.16 Aligned_cols=44 Identities=7% Similarity=0.084 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhC
Q 006276 20 EESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG 63 (652)
Q Consensus 20 E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~ 63 (652)
|.++..+.+++..+-+...++...+..+..-...+.++...|+.
T Consensus 3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak 46 (211)
T cd07598 3 DNQTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAK 46 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56677777777777777766665544443333444444444443
No 244
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=69.57 E-value=1.2e+02 Score=30.07 Aligned_cols=112 Identities=9% Similarity=0.095 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCC---CC-CCCccccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 006276 24 EVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG---HN-DPISVAFGGPVMTKFTIALREIGTYKEVLRSQV 99 (652)
Q Consensus 24 e~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~---~~-d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~ 99 (652)
..++.--..+...++.+.+++..+|.+++.+..+-..++.- +. -+...+ .-=...+..++++......+. ..
T Consensus 5 ~v~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~s~~l~~~~~~~~~~~---~~D~~v~~sL~kFs~~L~el~-~~ 80 (215)
T cd07632 5 SVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALG---KGDEEVISTLQYFAKVVDELN-VL 80 (215)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCC---CCcHHHHHHHHHHHHHHHHHH-HH
Confidence 44555566677777788888888887777776666555432 11 122221 122334455555555444432 23
Q ss_pred HHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHH
Q 006276 100 EHMLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKF 139 (652)
Q Consensus 100 ~~~i~~pL~~f~~~di~~~k-e~Rk~Fek~~~~YD~al~ky 139 (652)
-..+++.++.-+..-|..++ +.=+.|....++||...++|
T Consensus 81 h~~L~dqaq~sl~~pL~~F~KeDl~~vKe~KK~FdK~Se~~ 121 (215)
T cd07632 81 HSELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGIASNEH 121 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444444444444444432 33334555555555555444
No 245
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=68.42 E-value=1.4e+02 Score=30.16 Aligned_cols=29 Identities=21% Similarity=0.068 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006276 14 KQIQGLEESAEVLRERSLKFYKGCRKYTE 42 (652)
Q Consensus 14 asv~~~E~~le~l~~~l~kl~K~~kk~~~ 42 (652)
..+.+|-+....=+.+-++|.+.++++..
T Consensus 23 el~~f~keRa~iE~eYak~L~kLakk~~~ 51 (236)
T cd07651 23 ELRSFYKERASIEEEYAKRLEKLSRKSLG 51 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 34455666666667778888888887654
No 246
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=66.59 E-value=16 Score=38.48 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=34.2
Q ss_pred CCcccEEEEeCC-eeEEEEeCCHHHHHHHHHHHHHHHHHhh
Q 006276 392 DLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLL 431 (652)
Q Consensus 392 ~rrfcF~I~t~~-r~~~lqA~se~e~~~Wi~ai~~ai~~~l 431 (652)
.|++||.|.+.. ...+|..|.+.|.-.|=.+++.|+-.-.
T Consensus 350 ~R~~CF~~qs~~ge~~yfsVEl~seLa~wE~sfq~Atf~eV 390 (505)
T KOG3549|consen 350 SRQHCFLLQSSGGEPRYFSVELRSELARWENSFQAATFTEV 390 (505)
T ss_pred cccceEEEEcCCCCceEEEEehhhHHHHHHHHHhhHHhHHH
Confidence 456999999875 6799999999999999999999985433
No 247
>KOG4240 consensus Multidomain protein, contains SPEC repeats, PH, SH3, and separate rac-specific and rho-specific guanine nucleotide exchange factor domains [Signal transduction mechanisms]
Probab=64.01 E-value=2.7e+02 Score=34.19 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=28.6
Q ss_pred cEEEEeCC--eeEEEEeCCHHHHHHHHHHHHHHHHHh
Q 006276 396 CFRIISPT--KNYTLQAESALDQMDWIEKITGVIASL 430 (652)
Q Consensus 396 cF~I~t~~--r~~~lqA~se~e~~~Wi~ai~~ai~~~ 430 (652)
-|+|.... -.|.++|.|-+-...|+.-|+.+++.-
T Consensus 895 kf~~~~g~~~~~~~~~a~~~~~K~~W~~~ir~~~~~~ 931 (1025)
T KOG4240|consen 895 KFELWVGRTESVIDLKASNHETKQKWVKEIREVLQER 931 (1025)
T ss_pred EEEEeccCCCcceeeecCCcchhhhhccchHHHHHHH
Confidence 37776532 479999999999999999999998744
No 248
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.05 E-value=3.2e+02 Score=31.87 Aligned_cols=178 Identities=11% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHH
Q 006276 11 MFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGT 90 (652)
Q Consensus 11 ~FRasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~ 90 (652)
.|.+.+..+-...+.+-.--..|.....+++....+++..+..--.....-+....+... .+.+ .+....
T Consensus 44 s~~~~~~~~r~~~~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k~~~~~~v~~~~~~q------~~~~----~~~~~~ 113 (611)
T KOG2398|consen 44 SFAESWLVMRTSTEAMAKSHLELSRELQDLIKDVAKYYAEQLKTRKKSKEEGVEKLKQDQ------SKKK----AKDTYE 113 (611)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh------hHHH----HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHH
Q 006276 91 YKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARF 170 (652)
Q Consensus 91 ~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~asl 170 (652)
+.....+.+......+...+..+.-++....+-+-.++...|....++ |..+|+.|.+-.-
T Consensus 114 ~~~~~~~~~~~~~e~e~~~~~~k~~~~~~k~~~~i~~~~~~y~~~~~~-------------------~~~vr~~w~~~~~ 174 (611)
T KOG2398|consen 114 VLCAKSNYLHRCQEKESLKEKEKRKKELAKAELKIKEAREEYRSLVAK-------------------LEKVRKDWEQEMT 174 (611)
T ss_pred HHHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006276 171 SLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYIN 217 (652)
Q Consensus 171 Dyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~ 217 (652)
+.+.+++.++..+.-.+=+.|..|.+.-..-.-.-.+.++.++..+.
T Consensus 175 ~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is~~~~~~~q~~E~~k~~le 221 (611)
T KOG2398|consen 175 DLCLKFQEIEESRLSFLKEELWLFANQISESCVKIDQVMEEFKLTLE 221 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhc
No 249
>PRK12495 hypothetical protein; Provisional
Probab=59.79 E-value=4 Score=40.35 Aligned_cols=29 Identities=28% Similarity=0.562 Sum_probs=24.0
Q ss_pred cCCCCccccCCCCCCCceeeccceeeeccchhh
Q 006276 509 VCGNDRCADCGAPEPDWASLNLGVLVCIECSGV 541 (652)
Q Consensus 509 ~~~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~ 541 (652)
.+.+..|.+||.+-|. + -|+.+|..|..+
T Consensus 39 tmsa~hC~~CG~PIpa---~-pG~~~Cp~CQ~~ 67 (226)
T PRK12495 39 TMTNAHCDECGDPIFR---H-DGQEFCPTCQQP 67 (226)
T ss_pred ccchhhcccccCcccC---C-CCeeECCCCCCc
Confidence 3579999999999883 2 599999999754
No 250
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=59.60 E-value=3.3 Score=47.16 Aligned_cols=101 Identities=16% Similarity=-0.023 Sum_probs=58.3
Q ss_pred cCCCceeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCC
Q 006276 288 KGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH 367 (652)
Q Consensus 288 ~~~~~~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 367 (652)
.+...+.+-|+|.++.. ..+.|+++||++.++.++ |++.+.+...+-..
T Consensus 254 y~~~~~s~~k~lkrr~~-v~k~gqi~~y~~~~~~~~-~p~s~~d~~s~~~~----------------------------- 302 (936)
T KOG0248|consen 254 YWTQLTSRIKSLKRRYV-VFKNGQISFYRKHNNRDE-EPASKIDIRSVTKL----------------------------- 302 (936)
T ss_pred chhcchHHHHHHHhHhe-eeccceEEEEEcCCCccc-cccCccccccccee-----------------------------
Confidence 34455678899998854 458999999999855444 45554432111000
Q ss_pred CccccccceeecccceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHHHhhcc
Q 006276 368 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (652)
Q Consensus 368 ~~~~~~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~~~l~~ 433 (652)
....+....++...++ .+.| ...++.+-++...-.++||.+.+..-.....+
T Consensus 303 -~~~~~s~~fqli~~t~---------~~~~----~~~s~~lt~dw~~iL~~~iKv~~~~~~a~~~~ 354 (936)
T KOG0248|consen 303 -EQQGAAYAFQLITSTD---------KMNF----MTESERTTHDWVTILSAAIKATTLREMASRVT 354 (936)
T ss_pred -eccchhHHhhhhhhce---------eEEE----eccChhhhhhhHHHHHHHHHHHhccchhhhcC
Confidence 0000001112222222 2223 33567888999999999999998886544433
No 251
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=58.63 E-value=0.16 Score=53.53 Aligned_cols=52 Identities=21% Similarity=0.311 Sum_probs=39.8
Q ss_pred ceeecccceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006276 375 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (652)
Q Consensus 375 ~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai 427 (652)
+.++|..|+--. .-...+.|.|.|-+.+-.|.|.|-+..-+..||.|+...+
T Consensus 63 ~~~~LR~C~~v~-e~a~q~nY~~~i~~~~~~~tL~~~~s~Ir~~~~~A~~kT~ 114 (593)
T KOG4807|consen 63 GEIDLRSCTDVT-EYAVQRNYGFQIHTKDAVYTLSAMTSGIRRNWIEALRKTV 114 (593)
T ss_pred ccccHHHHHHHH-HHHHHhccceeecccchhhhhHHHHHHHHHHHHHHHHhcc
Confidence 456676665221 1223568999999999999999999999999999998553
No 252
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=57.90 E-value=2.1e+02 Score=28.72 Aligned_cols=34 Identities=3% Similarity=-0.004 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGE 46 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~ 46 (652)
+..|..+|.++..+....+++++.=+.+...+++
T Consensus 29 k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~ 62 (218)
T cd07663 29 KTFLVNYYNRIKDSCAKADKMTRSHKNVADDYIH 62 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888877776655554444
No 253
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=57.86 E-value=2.4e+02 Score=29.30 Aligned_cols=95 Identities=17% Similarity=0.260 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 25 VLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLN 104 (652)
Q Consensus 25 ~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~ 104 (652)
.+...|.+|+|.-|.++.++..+-.....-+.+|...|.+.+|.. .-+.++.+..+.|++.....+.+..+.. =
T Consensus 54 e~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl-----~DIsDklgvLl~e~ge~e~~~a~~~d~y-R 127 (271)
T PF13805_consen 54 ELSRKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDL-----SDISDKLGVLLYEIGELEDQYADRLDQY-R 127 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 445789999999988887766554444666777777776643332 2378899999999999877777665433 2
Q ss_pred HHHHHH--HHhhhHHHHHHHHHH
Q 006276 105 DRLLQY--VNIDLHEVKEARKCF 125 (652)
Q Consensus 105 ~pL~~f--~~~di~~~ke~Rk~F 125 (652)
..|..+ ..+.|.+.++.|+..
T Consensus 128 ~~LK~IR~~E~sl~p~R~~r~~l 150 (271)
T PF13805_consen 128 IHLKSIRNREESLQPSRDRRRKL 150 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhHHH
Confidence 334443 344456666555544
No 254
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=56.32 E-value=3.7 Score=28.37 Aligned_cols=27 Identities=30% Similarity=0.789 Sum_probs=16.7
Q ss_pred CccccCCCCC-CCceeeccceeeeccch
Q 006276 513 DRCADCGAPE-PDWASLNLGVLVCIECS 539 (652)
Q Consensus 513 ~~C~dC~~~~-p~w~s~~~gv~~C~~Cs 539 (652)
..|.+||..- -+|..-+|+.-||..|.
T Consensus 4 ~~C~eC~~~f~dSyL~~~F~~~VCD~CR 31 (34)
T PF01286_consen 4 PKCDECGKPFMDSYLLNNFDLPVCDKCR 31 (34)
T ss_dssp EE-TTT--EES-SSCCCCTS-S--TTT-
T ss_pred chHhHhCCHHHHHHHHHhCCcccccccc
Confidence 4799999974 47999999999999994
No 255
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=54.19 E-value=39 Score=31.28 Aligned_cols=41 Identities=17% Similarity=0.401 Sum_probs=34.9
Q ss_pred CCCcccEEEEe--------CCeeEEEEeCCHHHHHHHHHHHHHHHHHhh
Q 006276 391 SDLRFCFRIIS--------PTKNYTLQAESALDQMDWIEKITGVIASLL 431 (652)
Q Consensus 391 ~~rrfcF~I~t--------~~r~~~lqA~se~e~~~Wi~ai~~ai~~~l 431 (652)
.+-.+.|+|++ |.++|.|++.+.+-++..|.+|++.+....
T Consensus 110 ~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilre~~ 158 (160)
T cd01255 110 MESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRESV 158 (160)
T ss_pred cccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 34578999996 567899999999999999999999886543
No 256
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=53.76 E-value=9 Score=26.82 Aligned_cols=26 Identities=31% Similarity=0.806 Sum_probs=21.5
Q ss_pred CCCccccCCCCCCCceeeccceeeeccch
Q 006276 511 GNDRCADCGAPEPDWASLNLGVLVCIECS 539 (652)
Q Consensus 511 ~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs 539 (652)
.|..|..|++. |...+=|-+.|..|-
T Consensus 7 ~~~~C~~C~~~---~~~~~dG~~yC~~cG 32 (36)
T PF11781_consen 7 PNEPCPVCGSR---WFYSDDGFYYCDRCG 32 (36)
T ss_pred CCCcCCCCCCe---EeEccCCEEEhhhCc
Confidence 35679999998 777788999999993
No 257
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=53.41 E-value=2.6e+02 Score=28.41 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 006276 118 VKEARKCFDKASLLYDQAREKFLSL 142 (652)
Q Consensus 118 ~ke~Rk~Fek~~~~YD~al~ky~s~ 142 (652)
+..+|+.|+......+.+..|+...
T Consensus 129 l~K~K~~Y~~~~~~~e~ar~K~~~a 153 (234)
T cd07686 129 LEKLKCSYRQLTKEVNSAKEKYKDA 153 (234)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555443
No 258
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=52.09 E-value=9.4 Score=39.87 Aligned_cols=45 Identities=31% Similarity=0.541 Sum_probs=38.9
Q ss_pred CCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHHHhhcc
Q 006276 389 DQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (652)
Q Consensus 389 ~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~~~l~~ 433 (652)
++..-+.+..|.+..+.+.+-|.+..|+.+|+..|..+....++.
T Consensus 102 ~~~~~~~~~~~~S~~ks~~~~~as~~ek~e~~~~i~~~~~~~l~~ 146 (288)
T KOG1729|consen 102 DNERVRNGWQILSALKSFTVLAASQTEKNEWQNHITECVEDLLSK 146 (288)
T ss_pred cccccccchhhhcccchhhhhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 344446689999999999999999999999999999999888876
No 259
>PRK00085 recO DNA repair protein RecO; Reviewed
Probab=51.66 E-value=9.5 Score=38.75 Aligned_cols=32 Identities=41% Similarity=0.662 Sum_probs=27.3
Q ss_pred ccCCCCccccCCCCCC-Cceeeccceeeeccch
Q 006276 508 RVCGNDRCADCGAPEP-DWASLNLGVLVCIECS 539 (652)
Q Consensus 508 ~~~~N~~C~dC~~~~p-~w~s~~~gv~~C~~Cs 539 (652)
-.|.-..|+-||.+.. .|.+..-|.++|..|.
T Consensus 145 ~~p~l~~C~~Cg~~~~~~~f~~~~gg~~c~~c~ 177 (247)
T PRK00085 145 YGLDLDHCAVCGAPGDHRYFSPKEGGAVCSECG 177 (247)
T ss_pred CccchhhHhcCCCCCCceEEecccCCccccccc
Confidence 3567789999998755 7889999999999996
No 260
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=51.55 E-value=21 Score=38.22 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=33.0
Q ss_pred cccEEEEeCC--eeEEEEeCCHHHHHHHHHHHHHHHHHhh
Q 006276 394 RFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIASLL 431 (652)
Q Consensus 394 rfcF~I~t~~--r~~~lqA~se~e~~~Wi~ai~~ai~~~l 431 (652)
.-||+|.+|+ .+++|.|.+.++.+.|..||...+..++
T Consensus 236 nR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~ll 275 (506)
T KOG3551|consen 236 NRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNTLL 275 (506)
T ss_pred cceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhhHH
Confidence 3589999998 5799999999999999999998876544
No 261
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=50.47 E-value=19 Score=38.55 Aligned_cols=26 Identities=42% Similarity=0.754 Sum_probs=19.7
Q ss_pred ceeeeEEEeccCC----C-CCCCceeEEEEE
Q 006276 292 QTIRQGYLSKRSS----N-LRGDWKRRFFVL 317 (652)
Q Consensus 292 ~~~k~G~L~K~~~----~-~~~~WkrR~f~L 317 (652)
.++|+|++.||.. . .+..||+|||.|
T Consensus 302 ~~~~eg~~~~r~~~~~~~~~~~~fkk~~f~l 332 (333)
T cd05135 302 VTVKEGYLHKRKTEGPQLLTRFAFKKRYFWL 332 (333)
T ss_pred chhhhhHhhhccccCCCCcccccccceeeec
Confidence 4689999999873 1 223599999986
No 262
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=50.18 E-value=2.7e+02 Score=27.61 Aligned_cols=150 Identities=17% Similarity=0.111 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhC---CCCCCCccccCchhHHHH---HHHHHHHHHHHHH
Q 006276 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG---GHNDPISVAFGGPVMTKF---TIALREIGTYKEV 94 (652)
Q Consensus 21 ~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~---~~~d~~~~~~~g~~L~~f---~~~lkel~~~~~~ 94 (652)
.+++.+++.++.+.+.+++++..+..+..+-..+.++...|+. ++-++.... ......+ -.....+..+ ..
T Consensus 2 ~~f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~--~~~~~~~~~~~~~~~~~~~y-~~ 78 (216)
T cd07599 2 EQFEELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIVGP--KESVGSHPAPESTLARLSRY-VK 78 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCC--CcCcCCCCCcHHHHHHHHHH-HH
Confidence 4677788888888888888888766655544444444444443 233333211 0111111 1122333443 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHhccc----c-CCChhhH-hHHHHHHHHHHHHH
Q 006276 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYD---QAREKFLSLR----K-GTKTDVA-AILEEELHSARSAF 165 (652)
Q Consensus 95 l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD---~al~ky~s~~----K-~k~~~~~-~E~~~eL~~~Rk~f 165 (652)
.+..+...+..-+..+.+.-+.|+.+....|...+..-. ..+--|-+.. + ..+.... ...+..|..+.+.+
T Consensus 79 ~~~~l~~~~~~~l~~i~~~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l 158 (216)
T cd07599 79 ALEELKKELLEELEFFEERVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKL 158 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHH
Confidence 333445556666676777777788877777766665433 2223332222 1 1111111 23456788888888
Q ss_pred HHHHHHHH
Q 006276 166 EQARFSLV 173 (652)
Q Consensus 166 ~~aslDyv 173 (652)
..+.-+|.
T Consensus 159 ~~a~~~y~ 166 (216)
T cd07599 159 EEAKEEYE 166 (216)
T ss_pred HHHHHHHH
Confidence 77765554
No 263
>TIGR00613 reco DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair.
Probab=49.17 E-value=11 Score=38.08 Aligned_cols=35 Identities=29% Similarity=0.576 Sum_probs=28.1
Q ss_pred HccCCCCccccCCCCCC-Cceeeccceeeeccchhh
Q 006276 507 RRVCGNDRCADCGAPEP-DWASLNLGVLVCIECSGV 541 (652)
Q Consensus 507 ~~~~~N~~C~dC~~~~p-~w~s~~~gv~~C~~Cs~~ 541 (652)
--.|.-..|+.||..++ .+.+...|.++|..|...
T Consensus 142 G~~p~l~~C~~cg~~~~~~~fs~~~gg~~C~~c~~~ 177 (241)
T TIGR00613 142 GYALDLDKCAVCGSKEDLIYFSMTYGGALCRQCGEK 177 (241)
T ss_pred CCCcccCccCCCCCcCCCceEchhcCeEEChhhCcc
Confidence 34567789999998654 677889999999999763
No 264
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=49.10 E-value=0.99 Score=52.06 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=31.8
Q ss_pred CCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006276 392 DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (652)
Q Consensus 392 ~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~ 428 (652)
.-+..|.|++|-++..++|++-.||..||.+++..-.
T Consensus 59 n~~~sf~vi~~~rk~r~~adn~ke~e~wi~~~kt~q~ 95 (1099)
T KOG1170|consen 59 NPRPSFCVITPVRKHRLCADNRKEMEKWINQSKTPQH 95 (1099)
T ss_pred CCCCCeeEecccHHhhhhccchhHHHHhhccccchhh
Confidence 4456688999999999999999999999998876643
No 265
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=48.61 E-value=11 Score=27.34 Aligned_cols=25 Identities=36% Similarity=0.812 Sum_probs=18.4
Q ss_pred ccccCCCCCCCceeeccceeeeccch
Q 006276 514 RCADCGAPEPDWASLNLGVLVCIECS 539 (652)
Q Consensus 514 ~C~dC~~~~p~w~s~~~gv~~C~~Cs 539 (652)
.|..||+.. .-..-.-|-++|..|-
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g~~vC~~CG 26 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERGELVCPNCG 26 (43)
T ss_dssp SBTTTSSSE-EEEETTTTEEEETTT-
T ss_pred CCcCCcCCc-eEEcCCCCeEECCCCC
Confidence 689999975 3334457999999994
No 266
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=47.84 E-value=4.8 Score=42.50 Aligned_cols=27 Identities=26% Similarity=0.593 Sum_probs=21.2
Q ss_pred ceeeeEEEeccCCC----CCCCceeEEEEEe
Q 006276 292 QTIRQGYLSKRSSN----LRGDWKRRFFVLD 318 (652)
Q Consensus 292 ~~~k~G~L~K~~~~----~~~~WkrR~f~L~ 318 (652)
.++|+|+|.||..+ .++.||||||.|.
T Consensus 282 ~~~~e~~~~~r~~~~~~~~~~~~kkr~~~l~ 312 (313)
T cd05394 282 VHLKEGEMYKRAQGRTRIGKKNFKKRWFCLT 312 (313)
T ss_pred hhhHHHHHHhhccCCCccccccchhheeecC
Confidence 46899999998733 2467999999885
No 267
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=47.82 E-value=3.2e+02 Score=27.87 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 006276 19 LEESAEVLRERSLKFYKGCRKYTEGLGEG 47 (652)
Q Consensus 19 ~E~~le~l~~~l~kl~K~~kk~~~~~~~~ 47 (652)
+.++...++..++.+.+.+.+++..+..+
T Consensus 13 l~d~~~~lE~~~d~~k~~~~~~~k~~~~~ 41 (244)
T cd07595 13 LSDELLQIEKRVEAVKDACQNIHKKLISC 41 (244)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 45677888899999888888877654433
No 268
>TIGR02419 C4_traR_proteo phage/conjugal plasmid C-4 type zinc finger protein, TraR family. Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA.
Probab=47.25 E-value=7.1 Score=31.03 Aligned_cols=33 Identities=30% Similarity=0.661 Sum_probs=23.6
Q ss_pred cCCCCccccCCCCCC--Cceeeccceeeeccchhhh
Q 006276 509 VCGNDRCADCGAPEP--DWASLNLGVLVCIECSGVH 542 (652)
Q Consensus 509 ~~~N~~C~dC~~~~p--~w~s~~~gv~~C~~Cs~~H 542 (652)
.++...|.|||.+=| .+.- ..|+..|+.|...+
T Consensus 28 ~~s~g~C~~Cg~~Ip~~Rl~a-~p~~~~Cv~Cq~~~ 62 (63)
T TIGR02419 28 GPSLRECEDCGEPIPEARREA-LPGVTRCVSCQEIL 62 (63)
T ss_pred CCCCCeeccCCCcChHHHHhh-cCCcCCcHHHHhhc
Confidence 456789999999755 3332 34888999997653
No 269
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.24 E-value=4.1e+02 Score=30.29 Aligned_cols=78 Identities=10% Similarity=0.120 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 006276 117 EVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMD 196 (652)
Q Consensus 117 ~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~ 196 (652)
.++-.|.+|-+.+..--..+.++...-+.++.+.+++.+ ++.+.|+...+.+--+..++.++.++.+ .+++.+...++
T Consensus 567 a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~-~~~eer~~i~e~a~~La~R~eea~e~qe-~L~~~~~~L~~ 644 (741)
T KOG4460|consen 567 ATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLS-YCREERKSLREMAERLADRYEEAKEKQE-DLMNRMKKLLH 644 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHh
Confidence 344566777777777777788887665555555555432 3455555555555566667777777765 55555555544
No 270
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=47.04 E-value=3.8e+02 Score=28.52 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006276 159 HSARSAFEQARFSLVTALSN 178 (652)
Q Consensus 159 ~~~Rk~f~~aslDyv~~l~~ 178 (652)
..+--.|..++.+|...+.+
T Consensus 185 ~~a~~~yq~a~~ey~~~~~~ 204 (320)
T TIGR01834 185 FRDWMEYQQAMADYQLLEAD 204 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 271
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=46.63 E-value=3.5e+02 Score=27.93 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=49.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-----hhhHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Q 006276 111 VNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTK-----TDVAAILEEELHSARSAFE----QARFSLVTALSNVEA 181 (652)
Q Consensus 111 ~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~-----~~~~~E~~~eL~~~Rk~f~----~aslDyv~~l~~l~~ 181 (652)
+..-+.++...||.|+..-.....+..|--...|++. -..++-....+.+-+..+. .+.=||+..|+....
T Consensus 126 l~~~~~EL~KaKK~Y~~~cq~~e~~ReK~~~e~K~~~s~~qs~~slqK~~~K~~~k~~e~n~k~~~ARNeYLl~L~aaNa 205 (260)
T cd07677 126 LQETVKDLAKGKKKYFETEQMAHAVREKADIEAKSKLSLFQSRISLQKASVKLKARRSECNSKATHARNDYLLTLAAANA 205 (260)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444456667777777766666666666532223210 0011112223444444444 888899999999887
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 006276 182 KKRFEFLEAVSGTMDAHL 199 (652)
Q Consensus 182 ~k~~e~le~l~~~~~aq~ 199 (652)
.++.=|.+.|-+.|...-
T Consensus 206 ~~~kYY~~DLp~l~~~~d 223 (260)
T cd07677 206 HQDRYYQTDLVNIMKALD 223 (260)
T ss_pred HHHHhhhccHHHHHHHhc
Confidence 776545555555554443
No 272
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=46.33 E-value=2.1 Score=51.91 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=31.8
Q ss_pred CCCCcccEEEEeCC-eeEEEEeCCHHHHHHHHHHHHHHH
Q 006276 390 QSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI 427 (652)
Q Consensus 390 ~~~rrfcF~I~t~~-r~~~lqA~se~e~~~Wi~ai~~ai 427 (652)
+..|+..|.+.+.+ -.+.|||++-++|-.|++.++...
T Consensus 1003 etkrn~vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~St 1041 (1973)
T KOG4407|consen 1003 ETKRNQVFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSST 1041 (1973)
T ss_pred hhhhhhHHHhHHHHHHhHhhccCccccccchhhhhhhcc
Confidence 34678899999988 569999999999999999886553
No 273
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=46.16 E-value=3.8e+02 Score=28.19 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006276 128 ASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKK 183 (652)
Q Consensus 128 ~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k 183 (652)
....|+..+.+.++.+.-......++--.+|..+--.|..++.+|...+.++..+-
T Consensus 137 ~~~~~~~~~~~~l~~P~lG~~Re~q~~~~~l~~a~~~~~~a~~ey~~~l~~~~~~a 192 (293)
T PF09712_consen 137 WKEQYRETLGRWLQMPALGPSREHQEQLQALFDAWMEYQRASQEYQAQLSEAWMKA 192 (293)
T ss_pred HHHHHHHHHHHHHcCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999998887666555566666788899999999999999999886443
No 274
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=45.66 E-value=26 Score=37.59 Aligned_cols=106 Identities=18% Similarity=0.294 Sum_probs=59.1
Q ss_pred ceeeeEEEeccCCC-CCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcc
Q 006276 292 QTIRQGYLSKRSSN-LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (652)
Q Consensus 292 ~~~k~G~L~K~~~~-~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 370 (652)
.+.+=|||-++-+. ....|+.-+.+|....++.|-.-+..+. ..
T Consensus 291 evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~ke-----------------------------------aw 335 (506)
T KOG3551|consen 291 EVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKE-----------------------------------AW 335 (506)
T ss_pred chhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHH-----------------------------------Hh
Confidence 34455999877543 3467999999999888887754332210 00
Q ss_pred ccccceeecccceeeeC-----CCCCCCcccEEEEeCC----eeEEEEeCCHHHHHHHHHHHHHHHHHhhc
Q 006276 371 SAARHTVNLLTSTIKVD-----ADQSDLRFCFRIISPT----KNYTLQAESALDQMDWIEKITGVIASLLS 432 (652)
Q Consensus 371 ~~~~~~i~l~~~~vk~~-----~~~~~rrfcF~I~t~~----r~~~lqA~se~e~~~Wi~ai~~ai~~~l~ 432 (652)
+.+..+..|+...+... +...+-.-.|-+-+.. .++.|.+|+..|+-.|...|-+....+.+
T Consensus 336 s~P~~~ypLvaTRLvhsg~~~~s~~~g~~lsFa~RtGTrqGV~thlfrvEThrdLa~WtRslVqGch~Aae 406 (506)
T KOG3551|consen 336 SRPRHTYPLVATRLVHSGSGKGSVIKGLTLSFATRTGTRQGVETHLFRVETHRELAAWTRSLVQGCHEAAE 406 (506)
T ss_pred cChhhhhhhhhhhheecCCCCCCCcCCceEEEEEecccccceEEEEEEeccHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111111000 0001112345555543 57999999999999999888766554443
No 275
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=45.25 E-value=37 Score=38.41 Aligned_cols=88 Identities=23% Similarity=0.340 Sum_probs=56.1
Q ss_pred CceeeeEEEeccCCCCCCCceeEEEEEecCceEEEEecCCCCCCCCCCCcccccCcccccccccccccccccCCCCCCcc
Q 006276 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (652)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrR~f~L~~~g~l~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 370 (652)
..+.|+|+|.|+.+-+ =+||.|.|.+.+.+.|+.....+..| .
T Consensus 449 ~~i~k~~~l~k~~~lf---~rkr~lllTn~~rll~~~~~~~~lk~-----------------------------e----- 491 (604)
T KOG0592|consen 449 SLILKEGALEKRQGLF---ARKRMLLLTNGPRLLYVDPQNLVLKG-----------------------------E----- 491 (604)
T ss_pred hhHHhHHHHHhhhhhh---hceeEEEecCCCeEEEEecccceecc-----------------------------c-----
Confidence 3466788888885433 35799999999998888644432211 1
Q ss_pred ccccceeecccceeeeCCCCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006276 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (652)
Q Consensus 371 ~~~~~~i~l~~~~vk~~~~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~a 426 (652)
|.+..+ .+++. .....|-|.||.++|+|-- =+.....|-.+|...
T Consensus 492 ------ip~~~~-~~~e~---~n~~~~~i~TP~k~~~l~d-~~~~as~w~~ai~~~ 536 (604)
T KOG0592|consen 492 ------IPWSPD-LRVEL---KNSSTFFIHTPNKVYYLED-PEQRASVWCKAIETV 536 (604)
T ss_pred ------cccCcc-cceee---ccCcceEEECCccceeccC-cccchhHHHHhhhhh
Confidence 111111 11111 2245699999999988865 455667899999888
No 276
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=45.20 E-value=8.7 Score=35.37 Aligned_cols=34 Identities=26% Similarity=0.570 Sum_probs=27.1
Q ss_pred CCCCccccCCCCCCCceeeccceeeec-cchhhhcc
Q 006276 510 CGNDRCADCGAPEPDWASLNLGVLVCI-ECSGVHRN 544 (652)
Q Consensus 510 ~~N~~C~dC~~~~p~w~s~~~gv~~C~-~Cs~~Hr~ 544 (652)
|--+.|+-|| -...|+|+|.|.-.|. .|-++|..
T Consensus 116 P~r~fCaVCG-~~S~ysC~~CG~kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 116 PLRKFCAVCG-YDSKYSCVNCGTKYCSVRCLKTHNE 150 (156)
T ss_pred CcchhhhhcC-CCchhHHHhcCCceeechhhhhccc
Confidence 4457999999 5667999999998875 68888854
No 277
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=45.10 E-value=3.3e+02 Score=27.24 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=10.4
Q ss_pred ccchHHHHHHHHHHhhCCCCC
Q 006276 47 GYDGDIAFASALETFGGGHND 67 (652)
Q Consensus 47 ~~~~~~~f~~~L~~f~~~~~d 67 (652)
+..+...++++-..|..+..+
T Consensus 28 ~~~sG~~yv~~~~~f~~~L~~ 48 (215)
T cd07642 28 IHTSGLAHVENEEQYTQALEK 48 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554433
No 278
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=45.00 E-value=6e+02 Score=30.18 Aligned_cols=53 Identities=21% Similarity=0.161 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHh
Q 006276 9 SPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETF 61 (652)
Q Consensus 9 SP~FRasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f 61 (652)
-|.+-..++.+...++.+..|+.+=......+.+++.++-.+-..|..-++..
T Consensus 24 i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lIe~~ 76 (683)
T PF08580_consen 24 IPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREGLEEIDSAISRFLDLIEVY 76 (683)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 57788888898999999999999999988888888877765556666666554
No 279
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=43.59 E-value=30 Score=39.12 Aligned_cols=55 Identities=18% Similarity=0.366 Sum_probs=39.4
Q ss_pred ceeecccceeeeCC--CCCCCcccEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006276 375 HTVNLLTSTIKVDA--DQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS 429 (652)
Q Consensus 375 ~~i~l~~~~vk~~~--~~~~rrfcF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~~ 429 (652)
.+|.+..|.+.++. ...|..+.|.++-....++|.|++++-.+.|++.+..|...
T Consensus 541 ~~iPl~~~~v~~pe~~~~~D~~~~~k~~~s~~~~~~~a~~~q~qq~wl~~l~~A~~~ 597 (623)
T KOG4424|consen 541 ATIPLPGVEVTIPEFVRREDLFHVFKLVQSHLSWHLAADDEQLQQRWLEVLLLAVSG 597 (623)
T ss_pred cccccCccccCCCcccccchhcchhhhhhhcceeeeccCCHHHHHHHHHHHHhhhcc
Confidence 44566666666421 23355566776666678999999999999999999888543
No 280
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=43.40 E-value=1.7e+02 Score=23.30 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=34.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHH
Q 006276 112 NIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQAR 169 (652)
Q Consensus 112 ~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~as 169 (652)
...|..+-..|++..-.+.-|+ |...+. |.|..+++.+..|.+.|..|+.-+
T Consensus 7 ~~QLd~I~~~K~~l~ik~~H~E----kl~kit--K~p~El~~i~~kl~~~R~~FLn~~ 58 (62)
T PF06034_consen 7 TQQLDEINQMKRQLTIKSQHWE----KLKKIT--KNPKELQEIEKKLQELRQNFLNFG 58 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHhcc--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666665555553 333344 357788899999999999996654
No 281
>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....
Probab=43.22 E-value=19 Score=25.04 Aligned_cols=32 Identities=28% Similarity=0.772 Sum_probs=22.7
Q ss_pred cccCCCC-CCCceeecccee-eeccchhhhcccC
Q 006276 515 CADCGAP-EPDWASLNLGVL-VCIECSGVHRNLG 546 (652)
Q Consensus 515 C~dC~~~-~p~w~s~~~gv~-~C~~Cs~~Hr~lg 546 (652)
|..|+.. .|.|-....|.. ||..|---+|..|
T Consensus 1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~ 34 (36)
T PF00320_consen 1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYG 34 (36)
T ss_dssp -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHS
T ss_pred CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhC
Confidence 8899997 589998888888 9999976666544
No 282
>PRK11019 hypothetical protein; Provisional
Probab=42.42 E-value=8 Score=32.89 Aligned_cols=38 Identities=24% Similarity=0.626 Sum_probs=27.1
Q ss_pred CCCccccCCCCCC--CceeeccceeeeccchhhhcccCCCc
Q 006276 511 GNDRCADCGAPEP--DWASLNLGVLVCIECSGVHRNLGVHI 549 (652)
Q Consensus 511 ~N~~C~dC~~~~p--~w~s~~~gv~~C~~Cs~~Hr~lg~~i 549 (652)
.-..|.+||.+=| .+.-+. ++..|++|...+-..+.|.
T Consensus 35 syg~C~~CG~~Ip~~Rl~A~P-~a~~Cv~Cq~~~E~~~k~~ 74 (88)
T PRK11019 35 SLTECEECGEPIPEARRKAIP-GVRLCVACQQEKDLQQAAF 74 (88)
T ss_pred cCCeeCcCCCcCcHHHHhhcC-CccccHHHHHHHHHHHhHh
Confidence 3579999999755 344333 7899999998876554443
No 283
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=41.07 E-value=8.6 Score=40.66 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=20.5
Q ss_pred ceeeeEEEeccCCC----CCCCceeEEEEEe
Q 006276 292 QTIRQGYLSKRSSN----LRGDWKRRFFVLD 318 (652)
Q Consensus 292 ~~~k~G~L~K~~~~----~~~~WkrR~f~L~ 318 (652)
.++|+|+|.||..+ .++.||||||.|.
T Consensus 279 ~~~~~~~~~~r~~~~~~~~~~~~k~r~~~lt 309 (310)
T cd05134 279 ILLKEGFMIKRAQGRKRFGMKNFKKRWFRLT 309 (310)
T ss_pred chhhhhhHHHhcccCCcccccchhheeeecC
Confidence 46899999986522 2357999999985
No 284
>PF01258 zf-dskA_traR: Prokaryotic dksA/traR C4-type zinc finger; InterPro: IPR000962 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents domains identified in zinc finger-containing members of the DksA/TraR family. DksA is a critical component of the rRNA transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. In delta-dksA mutants, rRNA promoters are unresponsive to changes in amino acid availability, growth rate, or growth phase. In vitro, DksA binds to RNAP, reduces open complex lifetime, inhibits rRNA promoter activity, and amplifies effects of ppGpp and the initiating NTP on rRNA transcription [, ]. The dksA gene product suppresses the temperature-sensitive growth and filamentation of a dnaK deletion mutant of Escherichia coli. Gene knockout [] and deletion [] experiments have shown the gene to be non-essential, mutations causing a mild sensitivity to UV light, but not affecting DNA recombination []. In Pseudomonas aeruginosa, dksA is a novel regulator involved in the post-transcriptional control of extracellular virulence factor production []. The proteins contain a C-terminal region thought to fold into a 4-cysteine zinc finger. Other proteins found to contain a similar zinc finger domain include: the traR gene products encoded on the E. coli F and R100 plasmids [, ] the traR gene products encoded on Salmonella spp. plasmids pED208 and pSLT the dnaK suppressor hypothetical proteins from bacteria and bacteriophage FHL4, LIM proteins from Homo sapiens (Human) and Mus musculus (Mouse) [] More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2GVI_A 2KQ9_A 2KGO_A 1TJL_I.
Probab=40.84 E-value=4 Score=28.39 Aligned_cols=29 Identities=34% Similarity=0.833 Sum_probs=17.2
Q ss_pred ccccCCCCCC-Cceeeccceeeeccchhhh
Q 006276 514 RCADCGAPEP-DWASLNLGVLVCIECSGVH 542 (652)
Q Consensus 514 ~C~dC~~~~p-~w~s~~~gv~~C~~Cs~~H 542 (652)
.|.+||..=| .-.-+.-|..+|+.|+..|
T Consensus 5 ~C~~CGe~I~~~Rl~~~p~~~~C~~C~~~~ 34 (36)
T PF01258_consen 5 ICEDCGEPIPEERLVAVPGATLCVECQERR 34 (36)
T ss_dssp B-TTTSSBEEHHHHHHCTTECS-HHHHHHH
T ss_pred CccccCChHHHHHHHhCCCcEECHHHhCcc
Confidence 4999998633 1122224788999998765
No 285
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=39.36 E-value=5.3 Score=45.29 Aligned_cols=37 Identities=30% Similarity=0.599 Sum_probs=25.3
Q ss_pred eeeeEEEeccCCC--CCCCceeEEEEEecCceEEEEecCC
Q 006276 293 TIRQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQC 330 (652)
Q Consensus 293 ~~k~G~L~K~~~~--~~~~WkrR~f~L~~~g~l~y~~~~~ 330 (652)
-..+|||+++..+ ....|+|.||+|.++- ||.|.+..
T Consensus 562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~-l~~y~n~~ 600 (638)
T KOG1738|consen 562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDP-LLNYRNHR 600 (638)
T ss_pred chhhccchhhccchHHHHHhhhheeeecCch-hhhhhhhh
Confidence 3568999877543 2357999999998554 44555543
No 286
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.33 E-value=7e+02 Score=29.36 Aligned_cols=111 Identities=15% Similarity=0.272 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhh---CCCCCCCccccCchhHHHHHHHHHH
Q 006276 11 MFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFG---GGHNDPISVAFGGPVMTKFTIALRE 87 (652)
Q Consensus 11 ~FRasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~---~~~~d~~~~~~~g~~L~~f~~~lke 87 (652)
.||+.|+.++++-..--..+..+...++.+.+.||-- |......|- ..+++.+........|.++...+++
T Consensus 164 elr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~------~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~ 237 (660)
T KOG4302|consen 164 ELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLD------FSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKK 237 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------cccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHH
Confidence 5677777776666544444555555555555555433 332222221 1122211122223468888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006276 88 IGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKAS 129 (652)
Q Consensus 88 l~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~ 129 (652)
|........+.++.. ...+..+=+. +.--.|.+..|....
T Consensus 238 l~~~k~qr~~kl~~l-~~~~~~LWn~-l~ts~Ee~~~f~~~t 277 (660)
T KOG4302|consen 238 LKEEKKQRLQKLQDL-RTKLLELWNL-LDTSDEERQRFVHVT 277 (660)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHh-ccCCHHHHHHHcccc
Confidence 877666665554433 3333333333 333346666775444
No 287
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=39.12 E-value=8.7 Score=40.79 Aligned_cols=27 Identities=30% Similarity=0.690 Sum_probs=20.9
Q ss_pred CceeeeEEEeccCCC----CCCCceeEEEEE
Q 006276 291 VQTIRQGYLSKRSSN----LRGDWKRRFFVL 317 (652)
Q Consensus 291 ~~~~k~G~L~K~~~~----~~~~WkrR~f~L 317 (652)
..++|+|++.||..+ .++.||||||.|
T Consensus 284 ~~~~k~g~~~~~~~~~~~~~~~~~k~r~~~l 314 (315)
T cd05128 284 PVVLKEGFMIKRAQGRGRLGRKNFKKRYFRL 314 (315)
T ss_pred chhhhhhhhHhhcccCCCccccchhheeeec
Confidence 457899999887633 346899999987
No 288
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=38.94 E-value=1e+02 Score=26.32 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=22.8
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 6 LDDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKY 40 (652)
Q Consensus 6 ~~DSP~FRasv~~~E~~le~l~~~l~kl~K~~kk~ 40 (652)
..|+|.+|..|+..-..+..+-+-+...++....+
T Consensus 25 ~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 25 PRDSQELREKIHQLIQKTNQLIKEISELLKKLNSL 59 (102)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999877776666666666655555544
No 289
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.83 E-value=3.9e+02 Score=26.30 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccch
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDG 50 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~ 50 (652)
|..|..+|.++..+.+.++++++.=+.+..+++++..+
T Consensus 10 k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~a 47 (198)
T cd07630 10 RDMNTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSS 47 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777766666666655433
No 290
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=38.03 E-value=33 Score=26.04 Aligned_cols=37 Identities=27% Similarity=0.629 Sum_probs=29.0
Q ss_pred CCCccccCCCCC-CCceeeccce-eeeccchhhhcccCC
Q 006276 511 GNDRCADCGAPE-PDWASLNLGV-LVCIECSGVHRNLGV 547 (652)
Q Consensus 511 ~N~~C~dC~~~~-p~w~s~~~gv-~~C~~Cs~~Hr~lg~ 547 (652)
....|..|+... |.|=.-..|. ++|-.|.--.+..|.
T Consensus 2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~ 40 (52)
T smart00401 2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGG 40 (52)
T ss_pred CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCC
Confidence 357899999964 7898888886 999999776666553
No 291
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=37.81 E-value=29 Score=39.13 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=25.9
Q ss_pred CCcccEEEEeCCeeEEEEeCC------------HHHHHHHHHHHHHHH
Q 006276 392 DLRFCFRIISPTKNYTLQAES------------ALDQMDWIEKITGVI 427 (652)
Q Consensus 392 ~rrfcF~I~t~~r~~~lqA~s------------e~e~~~Wi~ai~~ai 427 (652)
..++||+|.|.. +.+|-.++ .+-.+.|-.||+.+.
T Consensus 477 ~~phcFEI~T~~-~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~al 523 (888)
T KOG4236|consen 477 TNPHCFEIRTAT-TVYFVGENPSSTPGGESGVGLDAAQGWETAIQQAL 523 (888)
T ss_pred CCCceEEEEeee-EEEEecCCCCCCccccccccchhhccCchhhhhcc
Confidence 458999999988 55555666 444888998887764
No 292
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=37.45 E-value=4.3e+02 Score=26.35 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 155 EEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELL 209 (652)
Q Consensus 155 ~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~ 209 (652)
+..|..+...+..+.-+|- .||. ++++.|=.++..-..||.-..+.+
T Consensus 138 e~KL~kae~el~~Ak~~Ye-~lN~-------~L~~ELP~L~~~ri~f~~p~F~sl 184 (211)
T cd07588 138 DQKLTKAEEELQQAKKVYE-ELNT-------ELHEELPALYDSRIAFYVDTLQSI 184 (211)
T ss_pred HhhHHHHHHHHHHHHHHHH-HHHH-------HHHHHhHHHHHHhhHHHHHHHHHH
Confidence 4456666666655553332 2222 445555555555566665555544
No 293
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=36.38 E-value=3.9e+02 Score=25.55 Aligned_cols=139 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHH
Q 006276 12 FRKQIQGLEESAEVLRERSLKFYKGCR-KYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGT 90 (652)
Q Consensus 12 FRasv~~~E~~le~l~~~l~kl~K~~k-k~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~ 90 (652)
|+.++..+.+--..++.+..+.+|.-+ .++....++......|...+...-..+.....-+ .....++.++|..+
T Consensus 17 ~~~sls~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~----~~~~l~d~inE~t~ 92 (165)
T PF09602_consen 17 WSQSLSLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKA----TGNSLNDSINEWTD 92 (165)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHH
Q 006276 91 YKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARF 170 (652)
Q Consensus 91 ~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~asl 170 (652)
-...+...+......|+..+.+- ...+...|+..+.+|....+. .|-.++++.=
T Consensus 93 k~~El~~~i~el~~~~~Ks~~~~-----------l~q~~~~~eEtv~~~ieqqk~---------------~r~e~qk~~~ 146 (165)
T PF09602_consen 93 KLNELSAKIQELLLSPSKSSFSL-----------LSQISKQYEETVKQLIEQQKL---------------TREEWQKVLD 146 (165)
T ss_pred HHHHHHHHHHHHHcchHHHHHHH-----------HHHHHhhHHHHHHHHHHHHHH---------------HHHHHHHHHH
Q ss_pred HHHHHHHHHh
Q 006276 171 SLVTALSNVE 180 (652)
Q Consensus 171 Dyv~~l~~l~ 180 (652)
.|+..+...+
T Consensus 147 ~yv~~~k~~q 156 (165)
T PF09602_consen 147 AYVEQAKSSQ 156 (165)
T ss_pred HHHHHHHHHH
No 294
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=36.02 E-value=7.3e+02 Score=29.65 Aligned_cols=26 Identities=15% Similarity=0.288 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006276 158 LHSARSAFEQARFSLVTALSNVEAKK 183 (652)
Q Consensus 158 L~~~Rk~f~~aslDyv~~l~~l~~~k 183 (652)
+.+.|+.....+-.+..++.++..+.
T Consensus 584 l~e~~~~l~~~ae~LaeR~e~a~d~Q 609 (717)
T PF10168_consen 584 LQEERKSLRESAEKLAERYEEAKDKQ 609 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455545555555555443
No 295
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=35.98 E-value=8.4e+02 Score=29.26 Aligned_cols=26 Identities=8% Similarity=0.268 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006276 18 GLEESAEVLRERSLKFYKGCRKYTEG 43 (652)
Q Consensus 18 ~~E~~le~l~~~l~kl~K~~kk~~~~ 43 (652)
.|+++|.+++--+-....+|..+..+
T Consensus 789 ~fse~vnniKP~i~avt~ACEE~rkS 814 (1102)
T KOG1924|consen 789 TFSEQVNNIKPDIVAVTAACEELRKS 814 (1102)
T ss_pred hHHHHHhhcChHHHHHHHHHHHHHhh
Confidence 47788888888888888888866554
No 296
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=35.62 E-value=4.7e+02 Score=26.25 Aligned_cols=43 Identities=16% Similarity=0.046 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhC
Q 006276 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG 63 (652)
Q Consensus 21 ~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~ 63 (652)
.+-+..+.....+-+.+++++..+..+..+...+..+-..++.
T Consensus 11 ~~F~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~~q~~i~~ 53 (224)
T cd07591 11 REFEFEERRYRTMEKASTKLQKEAKGYLDSLRALTSSQARIAE 53 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777887777665555455555555555544
No 297
>COG1381 RecO Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=35.58 E-value=19 Score=36.95 Aligned_cols=31 Identities=29% Similarity=0.605 Sum_probs=27.1
Q ss_pred cCCCCccccCCCCCC-Cceeeccceeeeccch
Q 006276 509 VCGNDRCADCGAPEP-DWASLNLGVLVCIECS 539 (652)
Q Consensus 509 ~~~N~~C~dC~~~~p-~w~s~~~gv~~C~~Cs 539 (652)
.|.=..|+.||.+.+ ...+.-.|-++|.+|+
T Consensus 151 ~~~l~~Ca~cg~~~~~~~~s~~~~~~~C~~~~ 182 (251)
T COG1381 151 GPNLTSCARCGTPVDPVYFSPKSGGFLCSKCA 182 (251)
T ss_pred ccchHHHhCcCCcCCCcceeeccCcccchhcc
Confidence 456788999999865 7999999999999998
No 298
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=34.97 E-value=4.6e+02 Score=25.92 Aligned_cols=171 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhcccchHHHHHHHHHHhhC--CCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 33 FYKGCRKYTEGLGEGYDGDIAFASALETFGG--GHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQY 110 (652)
Q Consensus 33 l~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~--~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f 110 (652)
++..++.-.+++.+. +++|.++|+.|.. .+++.. |......|....+..
T Consensus 26 lvdrVe~Ardsq~ea---qeQF~sALe~f~sl~~~~ggd------------------Le~~Y~~ln~~ye~s-------- 76 (201)
T PF11172_consen 26 LVDRVEDARDSQQEA---QEQFKSALEQFKSLVNFDGGD------------------LEDKYNALNDEYESS-------- 76 (201)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhCCCCCc------------------HHHHHHHHHHHHHHH--------
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHH-hccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 006276 111 VNIDLHEVKEARKCFDKASLLYDQAREKF-LSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLE 189 (652)
Q Consensus 111 ~~~di~~~ke~Rk~Fek~~~~YD~al~ky-~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le 189 (652)
-....+.+.+.++...-=+++..-. ..+..=..++--+..+.+|..+|+.| -.++..|...+.+ ++
T Consensus 77 ----~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~sLR~~S~~kL~~tr~~Y----~~L~~aM~~Ae~k-----m~ 143 (201)
T PF11172_consen 77 ----EDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNASLRRASEQKLAETRRRY----AQLIKAMRRAESK-----MQ 143 (201)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh-----cC
Q ss_pred HHHHHHHHHHHHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006276 190 AVSGTMDAHLRYF--KQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYK 245 (652)
Q Consensus 190 ~l~~~~~aq~~ff--~~g~e~~~~l~~~l~el~~~lq~~r~~~~~~~~~l~~~~~~~~ 245 (652)
+++.-++.+..|. .--..-+..|++.+..+...+..+....+...++...=|...+
T Consensus 144 PVL~~~~D~vL~LKHNLNA~AI~sL~~e~~~~~~di~~Li~~m~~sI~ead~FI~~l~ 201 (201)
T PF11172_consen 144 PVLAAFRDQVLYLKHNLNAQAIASLQGEFSSIESDISQLIKEMERSIAEADAFIASLE 201 (201)
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 299
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=34.73 E-value=12 Score=25.84 Aligned_cols=29 Identities=31% Similarity=0.660 Sum_probs=14.8
Q ss_pred CccccCCCCCCCcee---eccceeeeccchhhh
Q 006276 513 DRCADCGAPEPDWAS---LNLGVLVCIECSGVH 542 (652)
Q Consensus 513 ~~C~dC~~~~p~w~s---~~~gv~~C~~Cs~~H 542 (652)
+.|..||.+- .+.. -+.-=.+|..|.-||
T Consensus 1 kfC~~CG~~l-~~~ip~gd~r~R~vC~~Cg~Ih 32 (34)
T PF14803_consen 1 KFCPQCGGPL-ERRIPEGDDRERLVCPACGFIH 32 (34)
T ss_dssp -B-TTT--B--EEE--TT-SS-EEEETTTTEEE
T ss_pred CccccccChh-hhhcCCCCCccceECCCCCCEE
Confidence 4788999862 2221 244567899998887
No 300
>PHA00080 DksA-like zinc finger domain containing protein
Probab=34.45 E-value=16 Score=29.86 Aligned_cols=33 Identities=24% Similarity=0.732 Sum_probs=23.5
Q ss_pred CCCCccccCCCCCC--Cceeeccceeeeccchhhhc
Q 006276 510 CGNDRCADCGAPEP--DWASLNLGVLVCIECSGVHR 543 (652)
Q Consensus 510 ~~N~~C~dC~~~~p--~w~s~~~gv~~C~~Cs~~Hr 543 (652)
++...|.+||.+=| .|.-+ .|+..|+.|...+-
T Consensus 29 ~~~~~C~~Cg~~Ip~~Rl~a~-P~~~~Cv~Cq~~~E 63 (72)
T PHA00080 29 PSATHCEECGDPIPEARREAV-PGCRTCVSCQEILE 63 (72)
T ss_pred CCCCEecCCCCcCcHHHHHhC-CCccCcHHHHHHHH
Confidence 45668999999754 34333 37888999988653
No 301
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=33.28 E-value=5.5e+02 Score=26.31 Aligned_cols=27 Identities=15% Similarity=0.003 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006276 19 LEESAEVLRERSLKFYKGCRKYTEGLG 45 (652)
Q Consensus 19 ~E~~le~l~~~l~kl~K~~kk~~~~~~ 45 (652)
+.+++..++..++.+.+.+.++...+.
T Consensus 13 ~~~~~~~le~r~D~~k~~~~~i~k~~~ 39 (246)
T cd07618 13 LSEDLLQIERRLDTVRSVSHNVHKRLI 39 (246)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777888777777776655443
No 302
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=33.24 E-value=7.9e+02 Score=28.17 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-cccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 104 NDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLS-LRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNV 179 (652)
Q Consensus 104 ~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s-~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l 179 (652)
...+.+.++. ..+.-+.=.+.|.+-+.|+..+-+|+. ++++.=.++..+...++..+-..+++.+ |++.+|-+.
T Consensus 351 l~~~~~~~~~-~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~lE~Ig-Diie~l~~~ 425 (533)
T COG1283 351 LERLYEYIEG-DAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLEHIG-DIIERLLEL 425 (533)
T ss_pred HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHH
Confidence 4455555555 444445556677788888888888864 5555433322233344555555566665 555554443
No 303
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=32.80 E-value=8.1e+02 Score=28.15 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 11 MFRKQIQGLEESAEVLRERSLKFYKGCR 38 (652)
Q Consensus 11 ~FRasv~~~E~~le~l~~~l~kl~K~~k 38 (652)
.|..-|..+..+++.++..+.+..+.+.
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~ 137 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERR 137 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 3555667777777777777777766654
No 304
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=32.01 E-value=1.2e+02 Score=33.98 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=22.9
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHhhc
Q 006276 406 YTLQAESALDQMDWIEKITGVIASLLS 432 (652)
Q Consensus 406 ~~lqA~se~e~~~Wi~ai~~ai~~~l~ 432 (652)
+++.|+|++-.+.=|.+|++.|+.+..
T Consensus 207 ~~Isadt~eki~~Ai~vienli~~av~ 233 (554)
T KOG0119|consen 207 CLISADTQEKIKKAIAVIENLIQSAVS 233 (554)
T ss_pred EEEecchHHHHHHHHHHHHHHHHhhcc
Confidence 577899999999999999999886643
No 305
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=31.79 E-value=46 Score=28.13 Aligned_cols=32 Identities=19% Similarity=0.520 Sum_probs=24.7
Q ss_pred HccCCCCccccCCCCCCCceeeccceeeeccchh
Q 006276 507 RRVCGNDRCADCGAPEPDWASLNLGVLVCIECSG 540 (652)
Q Consensus 507 ~~~~~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~ 540 (652)
...-.-..|..|+.. .---+..||..|..|-.
T Consensus 30 ~~~~~~~~Cp~C~~~--~VkR~a~GIW~C~kCg~ 61 (89)
T COG1997 30 AQQRAKHVCPFCGRT--TVKRIATGIWKCRKCGA 61 (89)
T ss_pred HHHhcCCcCCCCCCc--ceeeeccCeEEcCCCCC
Confidence 344567899999998 44567889999999943
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=31.20 E-value=1.2e+03 Score=29.50 Aligned_cols=56 Identities=23% Similarity=0.186 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006276 171 SLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRE 228 (652)
Q Consensus 171 Dyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~el~~~lq~~r~ 228 (652)
.|-.++..+...++-++++..+. .+-...|.+..+.+++....+..+...+..+|+
T Consensus 1041 ~~~eAlrva~~~~~~d~iee~l~--~al~e~~~~~~~~L~~~k~~f~~yk~RLl~vRe 1096 (1265)
T KOG1920|consen 1041 EWEEALRVASKAKRDDIIEEVLK--PALLEAFGEVLEFLEDVKEQFVKYKKRLLVVRE 1096 (1265)
T ss_pred HHHHHHHHHHhcccchHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555443 444556666666666655555555555554544
No 307
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=30.69 E-value=7e+02 Score=26.76 Aligned_cols=79 Identities=11% Similarity=0.062 Sum_probs=46.1
Q ss_pred HHHHHHhhhHHH--------HHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 107 LLQYVNIDLHEV--------KEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSN 178 (652)
Q Consensus 107 L~~f~~~di~~~--------ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~ 178 (652)
+...++..++.+ ....+-|+++..+.|.++.|.......++-=+.--.++++.+.-+.-...+-||..+...
T Consensus 141 v~q~i~~~~~~L~~~k~p~Nin~~~lfe~i~~kl~~ai~kv~p~~~~~PLlKkpl~~a~w~~iE~~~~~~~~ey~~Rr~l 220 (465)
T KOG3973|consen 141 VTQLIDSALRTLNFPKQPGNINEWKLFETIRQKLDGAIKKVSPSQRSHPLLKKPLDEATWPEIEKQCESFSREYYNRRLL 220 (465)
T ss_pred HHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHhHHhcCCHhhcCCchhcCcCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544422 278899999999999999987433322211000011233444444445556677777777
Q ss_pred Hhhhhhh
Q 006276 179 VEAKKRF 185 (652)
Q Consensus 179 l~~~k~~ 185 (652)
+..+.++
T Consensus 221 l~sRL~v 227 (465)
T KOG3973|consen 221 LNSRLKV 227 (465)
T ss_pred HHHHHHH
Confidence 7777663
No 308
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=30.68 E-value=5.6e+02 Score=25.61 Aligned_cols=34 Identities=6% Similarity=0.014 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 006276 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGY 48 (652)
Q Consensus 15 sv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~ 48 (652)
..+.+|.+...|.+-+++++.+++.|.++...+.
T Consensus 20 rf~~le~~~~kL~Ke~K~Y~~av~~M~~~q~~~s 53 (211)
T cd07612 20 NLNMQQSDGNRLYKDLKAYLNAVKVMHESSKRLS 53 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888899999999999988888877665554
No 309
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=29.60 E-value=84 Score=37.17 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=37.4
Q ss_pred eeecccceeeeCC-CCCCCcccEEEEeCC---eeEEEEeCCHHHHHHHHHHHHHHHHHh
Q 006276 376 TVNLLTSTIKVDA-DQSDLRFCFRIISPT---KNYTLQAESALDQMDWIEKITGVIASL 430 (652)
Q Consensus 376 ~i~l~~~~vk~~~-~~~~rrfcF~I~t~~---r~~~lqA~se~e~~~Wi~ai~~ai~~~ 430 (652)
..++-.+.|...+ ...++-|.|.|.... ..|.|.|++.+|..+|+.+|+.+...+
T Consensus 855 i~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a 913 (1267)
T KOG1264|consen 855 ILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA 913 (1267)
T ss_pred cccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence 3344444443323 234667888877532 469999999999999999999875433
No 310
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=28.39 E-value=8.5e+02 Score=26.99 Aligned_cols=120 Identities=15% Similarity=0.166 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---
Q 006276 77 VMTKFTIALREIGTYKEVLRSQVE--H----MLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTK--- 147 (652)
Q Consensus 77 ~L~~f~~~lkel~~~~~~l~~~~~--~----~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~--- 147 (652)
.+..++..++........+..+.+ . .-.+-|.+.++..+.-+.+ ..+.|.+.+++.-+..+.-.
T Consensus 108 ~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~-------e~~~Y~~~l~~Le~~~~~~~~~~ 180 (447)
T KOG2751|consen 108 NTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAED-------EVDTYKACLQRLEQQNQDVSEED 180 (447)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhcCcccchHH
Confidence 455666655555555444433222 1 1122333344444443333 34445455555444444321
Q ss_pred ----hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 006276 148 ----TDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQ 204 (652)
Q Consensus 148 ----~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~ 204 (652)
.+.+.+.+.+|....+.-...--|+-..+.+++.++. ++.+....|...+..|-.+
T Consensus 181 ~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~-~~~e~~~~~~~ey~~~~~q 240 (447)
T KOG2751|consen 181 LLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAE-RLNEEEDQYWREYNNFQRQ 240 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 1223344555666666666666677777777776654 6666666665555544433
No 311
>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]
Probab=27.62 E-value=34 Score=29.09 Aligned_cols=35 Identities=26% Similarity=0.608 Sum_probs=25.1
Q ss_pred HHccCCCCccccCCCC-------CC-C---------ceeeccceeeeccchh
Q 006276 506 LRRVCGNDRCADCGAP-------EP-D---------WASLNLGVLVCIECSG 540 (652)
Q Consensus 506 l~~~~~N~~C~dC~~~-------~p-~---------w~s~~~gv~~C~~Cs~ 540 (652)
.++.|+-..|++||.+ .| + -++-.||-.+|..|..
T Consensus 28 ~kK~~~~p~C~~cg~pL~Gi~r~RP~e~~r~skt~krp~RpYGG~lc~~c~~ 79 (93)
T COG2174 28 EKKKPTIPKCAICGRPLGGIPRGRPREFRRLSKTKKRPERPYGGYLCANCVR 79 (93)
T ss_pred eeccCCCCcccccCCccCCccCCCcHHHHhccccccCcCCCcCceecHHHHH
Confidence 3667888999999995 11 1 1234589999999964
No 312
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=27.28 E-value=6.7e+02 Score=25.45 Aligned_cols=80 Identities=10% Similarity=0.145 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhCC----CCCCCccccCchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006276 51 DIAFASALETFGGG----HNDPISVAFGGPVMTKFTIALREIGTYKE---VLRSQVEHMLNDRLLQYVNIDLHEVKEARK 123 (652)
Q Consensus 51 ~~~f~~~L~~f~~~----~~d~~~~~~~g~~L~~f~~~lkel~~~~~---~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk 123 (652)
+..++..|..+... ..++... .+.+..-|...+.++..... .+..+++..+...|..+ +...+..||
T Consensus 35 EkEYA~~L~~L~kq~~kk~~~~~~~--~s~v~~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l----~~~~~~~~k 108 (234)
T cd07686 35 DKEYASTLQNLCNQVDKESTSQLDY--VSNVSKSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMM----IKDKQQVKK 108 (234)
T ss_pred HHHHHHHHHHHHHHhcccCcccccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHH
Confidence 45667777554421 1111111 12233667777766666443 44444444444444333 334466666
Q ss_pred HHHHHHHHHHHHH
Q 006276 124 CFDKASLLYDQAR 136 (652)
Q Consensus 124 ~Fek~~~~YD~al 136 (652)
.+.....+...-+
T Consensus 109 ~~~~~~~kl~~e~ 121 (234)
T cd07686 109 SYIGVHQQIEAEM 121 (234)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655554443
No 313
>PRK13715 conjugal transfer protein TraR; Provisional
Probab=27.15 E-value=20 Score=29.37 Aligned_cols=33 Identities=30% Similarity=0.747 Sum_probs=22.8
Q ss_pred CCccccCCCCCCC-ceeeccceeeeccchhhhcc
Q 006276 512 NDRCADCGAPEPD-WASLNLGVLVCIECSGVHRN 544 (652)
Q Consensus 512 N~~C~dC~~~~p~-w~s~~~gv~~C~~Cs~~Hr~ 544 (652)
...|.|||.+=|. -.-.--|+..|+.|...+-.
T Consensus 34 ~~~C~~Cg~~Ip~~Rl~a~p~~~~Cv~Cq~~~E~ 67 (73)
T PRK13715 34 VYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 (73)
T ss_pred cccHhhcCCcCCHHHHhcCCCcCCCHHHHHHHHH
Confidence 4589999997552 22223488999999876543
No 314
>COG1734 DksA DnaK suppressor protein [Signal transduction mechanisms]
Probab=25.84 E-value=18 Score=32.65 Aligned_cols=31 Identities=29% Similarity=0.673 Sum_probs=21.8
Q ss_pred CccccCCCCCC-Cceeeccceeeeccchhhhc
Q 006276 513 DRCADCGAPEP-DWASLNLGVLVCIECSGVHR 543 (652)
Q Consensus 513 ~~C~dC~~~~p-~w~s~~~gv~~C~~Cs~~Hr 543 (652)
..|.+||.+=| .=--...++.+|+.|.-.|-
T Consensus 81 G~Ce~cG~~Ip~~RL~A~P~A~~Ci~cQ~~~E 112 (120)
T COG1734 81 GICEECGEPIPEARLEARPTARLCIECQERAE 112 (120)
T ss_pred cchhccCCcCCHHHHhhCcchHHHHHHHHHHH
Confidence 48999999744 22223347889999987663
No 315
>cd07171 NR_DBD_ER DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers. DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ER interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Estrogen receptor is a transcription regulator that mediates the biological effects of hormone estrogen. The binding of estrogen to the receptor triggers the dimerization and the binding of the receptor dimer to estrogen response element, which is a palindromic inverted repeat: 5'GGTCAnnnTGACC-3', of target genes. Through ER, estrogen regulates development, reproduction and homeostasis. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, ER has a central well-conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserv
Probab=25.83 E-value=42 Score=28.12 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=25.3
Q ss_pred CCCccccCCCCCCCceeeccceeeeccchhhhcc
Q 006276 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (652)
Q Consensus 511 ~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~ 544 (652)
.|..|.-||.+.. ...||+..|..|.+..|-
T Consensus 2 ~~~~C~VCg~~~~---g~hyGv~sC~aC~~FFRR 32 (82)
T cd07171 2 DTHFCAVCSDYAS---GYHYGVWSCEGCKAFFKR 32 (82)
T ss_pred CCCCCeecCCcCc---ceEECceeehhhHHhHHH
Confidence 3667999997553 568999999999998865
No 316
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=25.65 E-value=1.2e+03 Score=27.98 Aligned_cols=31 Identities=13% Similarity=0.316 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 10 PMFRKQIQGLEESAEVLRERSLKFYKGCRKY 40 (652)
Q Consensus 10 P~FRasv~~~E~~le~l~~~l~kl~K~~kk~ 40 (652)
--+|.-++.+|+++..++..+.-|--.|...
T Consensus 88 riyRrdv~llEddlk~~~sQiriLQn~c~~l 118 (1265)
T KOG0976|consen 88 RIYRRDVNLLEDDLKHHESQIRILQNKCLRL 118 (1265)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999999988888887777766643
No 317
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=25.59 E-value=1.6e+02 Score=25.49 Aligned_cols=41 Identities=34% Similarity=0.443 Sum_probs=35.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 006276 7 DDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEG 47 (652)
Q Consensus 7 ~DSP~FRasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~ 47 (652)
+|+-..|..+.+.|++.+.|+..|.++-+.-+.++..++++
T Consensus 1 E~~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~ky 41 (96)
T PF11365_consen 1 EDSAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKY 41 (96)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999888776654
No 318
>smart00030 CLb CLUSTERIN Beta chain.
Probab=25.13 E-value=5.5e+02 Score=25.37 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=44.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChh--hHhHHHHHHHHHHHHHHHHHHHHH
Q 006276 107 LLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTD--VAAILEEELHSARSAFEQARFSLV 173 (652)
Q Consensus 107 L~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~--~~~E~~~eL~~~Rk~f~~aslDyv 173 (652)
|..=|++.|..+|+.|-.-|+..+++-.++...-..+++|+.. .+.|.+..|.+...--....+++.
T Consensus 20 vd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vCnetm~alW 88 (206)
T smart00030 20 INKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVCNETMMALW 88 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344677788899999999999999988887766555554322 235566666666655545444443
No 319
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=25.10 E-value=40 Score=37.14 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=21.7
Q ss_pred ceeeeEEEeccCCCC-CCCceeEEEEEecC
Q 006276 292 QTIRQGYLSKRSSNL-RGDWKRRFFVLDSR 320 (652)
Q Consensus 292 ~~~k~G~L~K~~~~~-~~~WkrR~f~L~~~ 320 (652)
-.+|+|+++.+...+ .+.|.++|++|..+
T Consensus 7 ~~~k~g~~~~~~~r~~~k~~~~~~~~L~~g 36 (429)
T KOG4047|consen 7 CLVKDGVPDNHRNKFKVKNVRDDGAELGSG 36 (429)
T ss_pred cccccCccchhhhhhccccccccceeeecc
Confidence 357899998665433 46899999999754
No 320
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=24.96 E-value=35 Score=24.24 Aligned_cols=14 Identities=43% Similarity=1.030 Sum_probs=11.5
Q ss_pred eeeccchhhhcccC
Q 006276 533 LVCIECSGVHRNLG 546 (652)
Q Consensus 533 ~~C~~Cs~~Hr~lg 546 (652)
+-|+.||.+|-.-|
T Consensus 2 yYCi~Cs~~h~e~~ 15 (41)
T PF13119_consen 2 YYCINCSEIHHEKG 15 (41)
T ss_pred EEEEEhHHhHHhhc
Confidence 57999999997644
No 321
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=24.95 E-value=44 Score=26.61 Aligned_cols=25 Identities=24% Similarity=0.668 Sum_probs=21.4
Q ss_pred CCccccCCCCCCCceeeccceeeeccc
Q 006276 512 NDRCADCGAPEPDWASLNLGVLVCIEC 538 (652)
Q Consensus 512 N~~C~dC~~~~p~w~s~~~gv~~C~~C 538 (652)
.+.|..||..... ..+-.+|.|..|
T Consensus 28 Sq~C~~CG~~~~~--~~~~r~~~C~~C 52 (69)
T PF07282_consen 28 SQTCPRCGHRNKK--RRSGRVFTCPNC 52 (69)
T ss_pred ccCccCccccccc--ccccceEEcCCC
Confidence 4789999998777 677789999999
No 322
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=24.89 E-value=7.7e+02 Score=25.35 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006276 121 ARKCFDKASLLYDQAREK 138 (652)
Q Consensus 121 ~Rk~Fek~~~~YD~al~k 138 (652)
.-.-|+....+|+.....
T Consensus 191 ~~~lf~~eL~k~~~~~~~ 208 (296)
T PF13949_consen 191 FEALFEEELKKFDPLQNR 208 (296)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666666665554
No 323
>PF15518 L_protein_N: L protein N-terminus; PDB: 2XI5_D 2XI7_D.
Probab=24.74 E-value=2e+02 Score=27.51 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 006276 130 LLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTM 195 (652)
Q Consensus 130 ~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~ 195 (652)
..|+..++|-.+ .++++...+...+|..+|..|-.. ++|..|+- +.|.++=+.+.+++++
T Consensus 4 ~~~~q~~~RI~~---~rda~vaKDI~~DLl~~RHnYFgr--elC~~l~I-EYRNDVp~~DIlLd~~ 63 (183)
T PF15518_consen 4 QKYNQFRARINA---ARDAEVAKDIDVDLLMARHNYFGR--ELCKALNI-EYRNDVPLDDILLDVL 63 (183)
T ss_dssp HHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHHHHHH--HHHHHHT-----SS--HHHHHHHHS
T ss_pred HHHHHHHHHHHh---cCChHHhhhhhHHHHHHHhHHHHH--HHHHHhCc-hhhcCCcHHHHHHHHc
Confidence 467777777443 457888888899999999999666 55555553 8888887777777644
No 324
>cd07173 NR_DBD_AR DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers. DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. To regulate gene expression, AR interacts with a palindrome of the core sequence 5'-TGTTCT-3' with a 3-bp spacer. It also binds to the direct repeat 5'-TGTTCT-3' hexamer in some androgen controlled genes. AR is activated by the androgenic hormones, testosterone or dihydrotestosterone, which are responsible for primary and for secondary male characteristics, respectively. The primary mechanism of action of ARs is by direct regulation of gene transcription. The binding of androgen results in a conformational change in the androgen receptor which causes its transport from the cytosol into the cell nucleus, and dimerization. The receptor dimer binds to a hormone response element of AR regulated genes and modul
Probab=24.73 E-value=41 Score=28.22 Aligned_cols=31 Identities=23% Similarity=0.569 Sum_probs=25.0
Q ss_pred CCCccccCCCCCCCceeeccceeeeccchhhhcc
Q 006276 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (652)
Q Consensus 511 ~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~ 544 (652)
..+.|.-||.+.. ...||+..|..|.+..|-
T Consensus 2 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (82)
T cd07173 2 PQKTCLICGDEAS---GCHYGALTCGSCKVFFKR 32 (82)
T ss_pred CCCCCeecCCcCc---ceEECcchhhhHHHHHHH
Confidence 3467999997654 568999999999998875
No 325
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=24.67 E-value=3.2e+02 Score=25.25 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006276 77 VMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLL 131 (652)
Q Consensus 77 ~L~~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~ 131 (652)
.+..+..++.+...-.+.+....-.. -.++..| |+.|++.|+.|-..+.+
T Consensus 97 l~~~L~~~~~e~eeeSe~lae~fl~g-~~d~~~F----l~~f~~~R~~yH~R~~K 146 (150)
T PF07200_consen 97 LLARLQAAASEAEEESEELAEEFLDG-EIDVDDF----LKQFKEKRKLYHLRRAK 146 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-S-SSS-HHHHHHH----HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHH----HHHHHHHHHHHHHHHhh
Confidence 56677777777776555554332222 1345555 55588888888777644
No 326
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=24.61 E-value=4.9e+02 Score=24.58 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHH
Q 006276 154 LEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYE 233 (652)
Q Consensus 154 ~~~eL~~~Rk~f~~aslDyv~~l~~l~~~k~~e~le~l~~~~~aq~~ff~~g~e~~~~l~~~l~el~~~lq~~r~~~~~~ 233 (652)
.-..|...-.......-|+=.-...++.++.|++|-. .+.-..-..+.++++|.++.+...+.+.-+..+..
T Consensus 12 S~~lL~~Si~~L~~~~~D~pRL~kvL~t~R~FeLvpe--------~dl~~Aq~~l~~EI~P~I~~Ll~k~e~~l~kL~Rr 83 (153)
T PF08287_consen 12 SVQLLQSSIETLDSGTSDFPRLTKVLQTTRHFELVPE--------PDLQAAQQSLRDEIEPQINHLLDKAEKHLEKLQRR 83 (153)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHcccCcccccCH--------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666677667778899999988743 23334445566889999988887776665555544
Q ss_pred HHHHHHHHH
Q 006276 234 QAALNERMQ 242 (652)
Q Consensus 234 ~~~l~~~~~ 242 (652)
...|..+.+
T Consensus 84 ~~tL~ak~E 92 (153)
T PF08287_consen 84 EETLKAKCE 92 (153)
T ss_pred HHHHHHHHH
Confidence 444544443
No 327
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=24.33 E-value=8.9e+02 Score=25.84 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhccccCC
Q 006276 129 SLLYDQAREKFLSLRKGT 146 (652)
Q Consensus 129 ~~~YD~al~ky~s~~K~k 146 (652)
.+.|+.-++++++++--.
T Consensus 155 ~~~~~~~~~~~L~~P~lG 172 (320)
T TIGR01834 155 DQLYRKNLSSFLSMPALG 172 (320)
T ss_pred HHHHHHHHHHHHcCCccC
Confidence 356666677777766443
No 328
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=24.25 E-value=1.1e+03 Score=26.93 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 006276 115 LHEVKEARKCFDKASLLYDQAREKFLSLRK 144 (652)
Q Consensus 115 i~~~ke~Rk~Fek~~~~YD~al~ky~s~~K 144 (652)
+..+.+.....++-+..++.++..|..+.+
T Consensus 124 l~~l~~Lv~sEekN~~~i~~~~ely~elr~ 153 (570)
T COG4477 124 LEDLNELVESEEKNSEEIDHVLELYEELRR 153 (570)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345556666666777777777777766654
No 329
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=23.72 E-value=41 Score=26.14 Aligned_cols=29 Identities=34% Similarity=0.511 Sum_probs=19.2
Q ss_pred CCccccCCCCCCCceeeccceeeeccchhhhccc
Q 006276 512 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNL 545 (652)
Q Consensus 512 N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~l 545 (652)
--.|+|||+.+.-- .--++-|.+| -||.|
T Consensus 20 iYiCgdC~~en~lk---~~D~irCReC--G~RIl 48 (62)
T KOG3507|consen 20 IYICGDCGQENTLK---RGDVIRCREC--GYRIL 48 (62)
T ss_pred EEEecccccccccc---CCCcEehhhc--chHHH
Confidence 45899999976411 1257889999 35543
No 330
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=23.45 E-value=43 Score=24.86 Aligned_cols=26 Identities=23% Similarity=0.676 Sum_probs=18.9
Q ss_pred ccccCCCCCCCceeeccceeeeccchh
Q 006276 514 RCADCGAPEPDWASLNLGVLVCIECSG 540 (652)
Q Consensus 514 ~C~dC~~~~p~w~s~~~gv~~C~~Cs~ 540 (652)
.|.=|+...+.= -.=+|.|+|.+|-.
T Consensus 1 ~CiiC~~~~~~G-I~I~~~fIC~~CE~ 26 (46)
T PF10764_consen 1 KCIICGKEKEEG-IHIYGKFICSDCEK 26 (46)
T ss_pred CeEeCCCcCCCC-EEEECeEehHHHHH
Confidence 478899887762 23359999999954
No 331
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.36 E-value=1.3e+03 Score=27.83 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHH
Q 006276 91 YKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARF 170 (652)
Q Consensus 91 ~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~asl 170 (652)
+.+.+..+.++....|...|-+.-+. .|.--..++..+.|+..+-| +.+.---.+++++|-.|+..+-
T Consensus 767 w~eEm~~~~s~LrtGp~~~FaDrvf~--nemN~~i~~t~~aye~~~fk----------~aLK~Gfyd~qaArD~Yrel~g 834 (1080)
T KOG0437|consen 767 WIEEMCENRSSLRTGPASTFADRVFE--NEMNALIAKTERAYEDTLFK----------DALKYGFYDLQAARDMYRELCG 834 (1080)
T ss_pred HHHHHHhhHHhhccCchhhHHHHHHH--HHHHHHHHHHHHHHHHhHHH----------HHHHhhhHHHHHHHHHHHHHhc
Confidence 34444444444445555555444322 24445566677777777666 2233334678889988888765
Q ss_pred -----HHHHHHHHHhhh
Q 006276 171 -----SLVTALSNVEAK 182 (652)
Q Consensus 171 -----Dyv~~l~~l~~~ 182 (652)
|++.+.-+.|..
T Consensus 835 ~~mh~dLv~r~ietqtl 851 (1080)
T KOG0437|consen 835 EGMHRDLVFRFIETQTL 851 (1080)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 566665555543
No 332
>cd07170 NR_DBD_ERR DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers. DNA-binding domain of estrogen related receptors (ERRs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ERR interacts with the palindromic inverted repeat, 5'GGTCAnnnTGACC-3', upstream of the target gene and modulates the rate of transcriptional initiation. The estrogen receptor-related receptors (ERRs) are transcriptional regulators, which are closely related to the estrogen receptor (ER) family. Although ERRs lack the ability to bind to estrogen and are so-called orphan receptors, they share target genes, co-regulators and promoters with the estrogen receptor (ER) family. By targeting the same set of genes, ERRs seem to interfere with the classic ER-mediated estrogen response in various ways. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription
Probab=23.33 E-value=47 Score=28.83 Aligned_cols=29 Identities=24% Similarity=0.619 Sum_probs=23.9
Q ss_pred CccccCCCCCCCceeeccceeeeccchhhhcc
Q 006276 513 DRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (652)
Q Consensus 513 ~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~ 544 (652)
..|.-||.+.. ...||+..|..|.+..|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (97)
T cd07170 5 RLCLVCGDIAS---GYHYGVASCEACKAFFKR 33 (97)
T ss_pred CCCeecCCcCc---ceEECceeehhhhHHHHH
Confidence 46999997654 458999999999998875
No 333
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=23.31 E-value=49 Score=24.40 Aligned_cols=25 Identities=36% Similarity=0.744 Sum_probs=19.3
Q ss_pred ccccCCCCCCCceeeccceeeeccc
Q 006276 514 RCADCGAPEPDWASLNLGVLVCIEC 538 (652)
Q Consensus 514 ~C~dC~~~~p~w~s~~~gv~~C~~C 538 (652)
.|.+|+....-|+++..|-..|...
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~~ 25 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGRY 25 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCCC
Confidence 5999998887888888777777443
No 334
>cd07160 NR_DBD_LXR DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers. DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. LXR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. LXR operates as cholesterol sensor which protects cells from cholesterol overload by stimulating reverse cholesterol transport from peripheral tissues to the liver and its excretion in the bile. Oxidized cholesterol derivatives or oxysterols were identified as specific ligands for LXRs. LXR functions as a heterodimer with the retinoid X receptor (RXR) which may be activated by either LXR agonist or 9-cis retinoic acid, a specific RXR ligand. The LXR/RXR complex binds to a liver X receptor response element (LXRE) in the promoter region of target genes. The ideal LXRE seq
Probab=23.09 E-value=50 Score=28.89 Aligned_cols=31 Identities=35% Similarity=0.860 Sum_probs=25.5
Q ss_pred CCCccccCCCCCCCceeeccceeeeccchhhhcc
Q 006276 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (652)
Q Consensus 511 ~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~ 544 (652)
.+..|.-||.... ...||+..|..|.+..|-
T Consensus 17 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 47 (101)
T cd07160 17 GNEVCSVCGDKAS---GFHYNVLSCEGCKGFFRR 47 (101)
T ss_pred CCCCCeecCCcCc---ceEECcceehhhhhhhhh
Confidence 4677999998654 468999999999998875
No 335
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.05 E-value=9.9e+02 Score=25.93 Aligned_cols=106 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHh
Q 006276 79 TKFTIALREIGTYKEVLRSQVEHMLN------DRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAA 152 (652)
Q Consensus 79 ~~f~~~lkel~~~~~~l~~~~~~~i~------~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~ 152 (652)
..+...+.+.......+...+...+- ..|.+=+...+.+|+..+..+...+++|..+.+....+.+. +.
T Consensus 230 ~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~-----L~ 304 (359)
T PF10498_consen 230 KSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRE-----LA 304 (359)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----HH
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhhhhhHHH
Q 006276 153 ILEEELHSARSAFEQARFSL-----VTALSNVEAKKRFEFLE 189 (652)
Q Consensus 153 E~~~eL~~~Rk~f~~aslDy-----v~~l~~l~~~k~~e~le 189 (652)
+...+|...+..-....--. +.+|...-.+.+-|+.+
T Consensus 305 ~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 305 EISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
No 336
>cd06968 NR_DBD_ROR DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers. DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ROR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. RORS are key regulators of many physiological processes during embryonic development. RORs bind as monomers to specific ROR response elements (ROREs) consisting of the consensus core motif AGGTCA preceded by a 5-bp A/T-rich sequence. There are three subtypes of retinoid-related orphan receptors (RORs), alpha, beta, and gamma, which differ only in N-terminal sequence and are distributed in distinct tissues. RORalpha plays a key role in the development of the cerebellum particularly in the regulation of the maturation and survival of Purkinje cells. RORbe
Probab=23.01 E-value=52 Score=28.44 Aligned_cols=31 Identities=29% Similarity=0.708 Sum_probs=25.3
Q ss_pred CCCccccCCCCCCCceeeccceeeeccchhhhcc
Q 006276 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (652)
Q Consensus 511 ~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~ 544 (652)
.+..|.-||.+.. ...||+..|..|.+..|-
T Consensus 4 ~~~~C~VCg~~~~---g~hyGv~sC~aC~~FFRR 34 (95)
T cd06968 4 EVIPCKICGDKSS---GIHYGVITCEGCKGFFRR 34 (95)
T ss_pred cccCCcccCCcCc---ceEECceeehhhHHhhHH
Confidence 4567999998654 457999999999998875
No 337
>KOG4305 consensus RhoGEF GTPase [Signal transduction mechanisms]
Probab=22.40 E-value=6.6e+02 Score=31.15 Aligned_cols=39 Identities=26% Similarity=0.282 Sum_probs=31.7
Q ss_pred cEEEEeCCeeEEEEeCCHHHHHHHHHHHHHHHHHhhccC
Q 006276 396 CFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 434 (652)
Q Consensus 396 cF~I~t~~r~~~lqA~se~e~~~Wi~ai~~ai~~~l~~~ 434 (652)
.|-+...+..|+|.|++..+++.|++.|..+-...++..
T Consensus 655 ~~~~ga~~~~ftly~~s~~~r~~w~ekI~~aq~~~le~~ 693 (1029)
T KOG4305|consen 655 LYLGGARGASFTLYAESLNGRDQWVEKIKQAQKRSLERN 693 (1029)
T ss_pred heeccccceEEEeeccchHHhhhHHhhhhHHHHhhhhhh
Confidence 344445567899999999999999999999987777653
No 338
>KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.78 E-value=1e+03 Score=25.60 Aligned_cols=58 Identities=9% Similarity=0.153 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh
Q 006276 120 EARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSA---RSAFEQARFSLVTALSNVEAKKR 184 (652)
Q Consensus 120 e~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~---Rk~f~~aslDyv~~l~~l~~~k~ 184 (652)
+.-++|+....-+-.+++| |+.+++...+++|.+. -+.-+..++|++..|...+.+..
T Consensus 21 ~mQ~kyW~tkqv~~k~~Gk-------KEDeHlvaSDaeLDaklelf~Si~~T~l~L~kiId~Yq~rl~ 81 (436)
T KOG3891|consen 21 KMQQKYWETKQVFIKATGK-------KEDEHLVASDAELDAKLELFHSIQRTCLDLLKIIDLYQKRLC 81 (436)
T ss_pred HHHHHHHHHHHHHHHHhcC-------ccchhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544443333 4455554444444433 33344566777776666665544
No 339
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=21.57 E-value=3.4e+02 Score=22.74 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYT 41 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~ 41 (652)
+..++..+..++.++..++.+.+....+.
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll 53 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLL 53 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34445555555555555555554444443
No 340
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=21.54 E-value=70 Score=34.33 Aligned_cols=26 Identities=23% Similarity=0.677 Sum_probs=17.9
Q ss_pred eeeeEEEe-ccCCC----CCCCceeEEEEEe
Q 006276 293 TIRQGYLS-KRSSN----LRGDWKRRFFVLD 318 (652)
Q Consensus 293 ~~k~G~L~-K~~~~----~~~~WkrR~f~L~ 318 (652)
..|+|.++ ||..+ ..+.||+|||.|.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 331 (337)
T cd05395 301 MVKEGFLFLHRTKGKGPLMTSPFKKLYFTLT 331 (337)
T ss_pred HHHHHHHHHHhccCCCCccccchhhheeeee
Confidence 34677666 66532 2368999999986
No 341
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=21.19 E-value=9.8e+02 Score=25.97 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 118 VKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTAL 176 (652)
Q Consensus 118 ~ke~Rk~Fek~~~~YD~al~ky~s~~K~k~~~~~~E~~~eL~~~Rk~f~~aslDyv~~l 176 (652)
+...|+...+.+.+|+..|+.. .+-+ ..-+|+-.++++.=..|....|.|+..|
T Consensus 186 veK~k~evqktkekYektl~el---~~yt--~~YmE~MeqvFe~CQ~fE~~Rl~Ffkei 239 (472)
T KOG2856|consen 186 VEKCKQEVQKTKEKYEKTLAEL---NKYT--PVYMEDMEQVFEQCQQFEEKRLQFFKEI 239 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hccC--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777887777663 2221 1234555667777777766666665433
No 342
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=20.96 E-value=8.1e+02 Score=24.17 Aligned_cols=43 Identities=23% Similarity=0.381 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 006276 98 QVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRK 144 (652)
Q Consensus 98 ~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K 144 (652)
..+..+...-.++..+-|.+.+..++-|+. |+.+..||..+++
T Consensus 37 ~~e~~~~~KY~~lR~ElI~ELkqsKklydn----YYkL~~KY~~LK~ 79 (196)
T PF15272_consen 37 LQETSYKEKYQQLRQELINELKQSKKLYDN----YYKLYSKYQELKK 79 (196)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 445666777888888888999988888874 7788899999887
No 343
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=20.89 E-value=8.3e+02 Score=24.22 Aligned_cols=86 Identities=8% Similarity=0.013 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCC--CCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006276 28 ERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHND--PISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLND 105 (652)
Q Consensus 28 ~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d--~~~~~~~g~~L~~f~~~lkel~~~~~~l~~~~~~~i~~ 105 (652)
..++++.-..+.++..-.++..+..+++.+...|.+.+.. +..... ..-..+|.++-++...+..+-.+. -.
T Consensus 3 ~i~~~~~P~~e~lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~~s--~~s~~lG~~L~~~s~~~r~i~~~~----~~ 76 (219)
T PF08397_consen 3 NIMEDFNPAWENLVSLGKKYQKALRAMSQAAAAFFDALQKIGDMASNS--RGSKELGDALMQISEVHRRIENEL----EE 76 (219)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SSHHHHHHHHHHHHHHHHHHHHHH----HH
T ss_pred hHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CccccHHHHHHHHHHHHHHHHHHH----HH
Confidence 3455555555555554333333334444444445443211 111111 124566777777776665554433 33
Q ss_pred HHHHHHHhhhHHHH
Q 006276 106 RLLQYVNIDLHEVK 119 (652)
Q Consensus 106 pL~~f~~~di~~~k 119 (652)
-...|..+-|.|..
T Consensus 77 ~~~~~~~~li~pLe 90 (219)
T PF08397_consen 77 VFKAFHSELIQPLE 90 (219)
T ss_dssp HHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555544
No 344
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=20.69 E-value=1.6e+03 Score=27.57 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Q 006276 193 GTMDAHLRYFKQGYELLH-QMEPYINQVLTYAQQS 226 (652)
Q Consensus 193 ~~~~aq~~ff~~g~e~~~-~l~~~l~el~~~lq~~ 226 (652)
.|=.+..+-|+|-++.|. .+..|+.++.++++.+
T Consensus 1059 afEKScqaMF~Qi~daF~~Gi~e~~~q~~s~~~s~ 1093 (1283)
T KOG1916|consen 1059 AFEKSCQAMFQQIDDAFQKGIQEHTQQLISSASSV 1093 (1283)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 555777788888888885 5777887777776554
No 345
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.67 E-value=8.9e+02 Score=24.50 Aligned_cols=120 Identities=9% Similarity=-0.002 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHH---HHHHHH
Q 006276 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTY---KEVLRS 97 (652)
Q Consensus 21 ~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~---~~~l~~ 97 (652)
.++.+++=.++.+.-.++++...+..+......++.+...||..+..-.... ..+ ..+.++..++.. ...+..
T Consensus 18 ~el~~~rp~vk~~y~~~~~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E-~~~---~L~~a~~kLg~v~~~v~dl~~ 93 (230)
T cd07625 18 TELAEFRPLVKSIYLTAQDLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEE-THH---GLGNLYEKFGKVLTAVGDIDS 93 (230)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccc---hHHHHHHHHHHHHHHHhhHHH
Confidence 4566677778888888888888777777778889999999987644332222 122 333455555543 333444
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 006276 98 QVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRK 144 (652)
Q Consensus 98 ~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K 144 (652)
--......-|..-++..+.-+...|..|.....-|.....--..+.+
T Consensus 94 ~QA~~d~~tl~d~L~~~~~~~~~vKealtnR~~~~re~~qAq~~~~~ 140 (230)
T cd07625 94 IQATVDMATLYDGLEWISRDAYVVKEALTNRHLLMRELIQAQQNTKS 140 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556677788888889999999999988888766655444443
No 346
>cd06966 NR_DBD_CAR DNA-binding domain of constitutive androstane receptor (CAR) is composed of two C4-type zinc fingers. DNA-binding domain (DBD) of constitutive androstane receptor (CAR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. CAR DBD interacts with CAR response element, a perfect repeat of two AGTTCA motifs with a 4 bp spacer upstream of the target gene, and modulates the rate of transcriptional initiation. The constitutive androstane receptor (CAR) is a ligand-regulated transcription factor that responds to a diverse array of chemically distinct ligands, including many endogenous compounds and clinical drugs. It functions as a heterodimer with RXR. The CAR/RXR heterodimer binds many common response elements in the promoter regions of a diverse set of target genes involved in the metabolism, transport, and ultimately, elimination of these molecules from the body. CAR is a closest mammalian
Probab=20.60 E-value=48 Score=28.56 Aligned_cols=29 Identities=24% Similarity=0.663 Sum_probs=23.1
Q ss_pred CccccCCCCCCCceeeccceeeeccchhhhcc
Q 006276 513 DRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (652)
Q Consensus 513 ~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~ 544 (652)
+.|.-||.+.. ...||+..|..|.+..|-
T Consensus 1 ~~C~VCg~~a~---g~hyGv~sC~aC~~FFRR 29 (94)
T cd06966 1 KICGVCGDKAL---GYNFNAITCESCKAFFRR 29 (94)
T ss_pred CCCeeCCCcCc---ceEECcceeeeehheehh
Confidence 35888987644 458999999999998875
No 347
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=20.49 E-value=9e+02 Score=24.48 Aligned_cols=118 Identities=9% Similarity=0.050 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhhCCCCCCCccccCchhHHHHHHHHHHHHHHHHHH---HHHHH
Q 006276 24 EVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVL---RSQVE 100 (652)
Q Consensus 24 e~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f~~~~~d~~~~~~~g~~L~~f~~~lkel~~~~~~l---~~~~~ 100 (652)
+..+.+++.|-...+++...+..+...-..++.++..|+.....--.. .... ..+.++..+......+ .....
T Consensus 25 ~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~-E~~~---~ls~~l~~laev~~ki~~~~~~qa 100 (234)
T cd07664 25 EEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNS-EDHT---ALSRALSQLAEVEEKIDQLHQDQA 100 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cccc---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666665555555444577888888887654322211 1122 3444455555443333 33333
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 006276 101 HMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKG 145 (652)
Q Consensus 101 ~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~K~ 145 (652)
..-...+...+++.|+-+.-.|..|.....-|.....--..+.|+
T Consensus 101 ~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kk 145 (234)
T cd07664 101 FADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKK 145 (234)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666788888888999999999998887766655555544
No 348
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=20.38 E-value=41 Score=37.05 Aligned_cols=30 Identities=33% Similarity=0.665 Sum_probs=25.7
Q ss_pred CCCCccccCCCCCCCceeeccceeeeccchhhh
Q 006276 510 CGNDRCADCGAPEPDWASLNLGVLVCIECSGVH 542 (652)
Q Consensus 510 ~~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~H 542 (652)
++.+.||-||.. =+|.-|||-.|..|.|.-
T Consensus 267 ~~e~~CAVCgDn---AaCqHYGvRTCEGCKGFF 296 (605)
T KOG4217|consen 267 SAEGLCAVCGDN---AACQHYGVRTCEGCKGFF 296 (605)
T ss_pred CccceeeecCCh---HHhhhcCccccccchHHH
Confidence 457899999987 368899999999999964
No 349
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=20.22 E-value=9.6e+02 Score=24.70 Aligned_cols=51 Identities=10% Similarity=0.147 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006276 80 KFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLL 131 (652)
Q Consensus 80 ~f~~~lkel~~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~ 131 (652)
.|.....-|......+..++...-++.+--+... +...+.+|++|.|...+
T Consensus 151 e~e~m~~~i~~kF~~iq~~lkqstce~vmiLr~r-~ldarRKRRNFsK~aTe 201 (334)
T KOG0774|consen 151 EIERMVQIISKKFSHIQMQLKQSTCEAVMILRSR-FLDARRKRRNFSKQATE 201 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcccchhHHH
Confidence 3433333344433333334444445555555555 55567788888887653
No 350
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=20.18 E-value=9e+02 Score=27.89 Aligned_cols=53 Identities=8% Similarity=0.255 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006276 90 TYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLR 143 (652)
Q Consensus 90 ~~~~~l~~~~~~~i~~pL~~f~~~di~~~ke~Rk~Fek~~~~YD~al~ky~s~~ 143 (652)
.+++.+.+++..++-+.+++..++ |...|+.++.|++.-.+.+..|.++..-.
T Consensus 355 ~~r~~v~nsI~kcLe~qIn~qf~t-Ie~Lk~~n~~~~~kl~~~e~~L~r~~~~~ 407 (557)
T PF01763_consen 355 AFRDSVSNSINKCLEGQINNQFDT-IEDLKEENQDLEKKLRELESELSRYREEA 407 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346666678888888888888888 89999999999999999999999987654
No 351
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=20.04 E-value=59 Score=30.50 Aligned_cols=38 Identities=26% Similarity=0.630 Sum_probs=26.4
Q ss_pred cccHHHHHHccCCCCccccCCCCCCCceeeccceeeeccchhhhccc
Q 006276 499 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNL 545 (652)
Q Consensus 499 ~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~gv~~C~~Cs~~Hr~l 545 (652)
..+.++.+....+...|.-||.. +-++|..|.|-|+.+
T Consensus 86 L~~lL~~~~~~~~~~~C~~Cgg~---------rfv~C~~C~Gs~k~~ 123 (147)
T cd03031 86 LRKLLKGIRARAGGGVCEGCGGA---------RFVPCSECNGSCKVF 123 (147)
T ss_pred HHHHHhhcccccCCCCCCCCCCc---------CeEECCCCCCcceEE
Confidence 33444444444466779999964 567899999998875
No 352
>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-cha
Probab=20.04 E-value=9.6e+02 Score=24.64 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHh
Q 006276 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETF 61 (652)
Q Consensus 13 Rasv~~~E~~le~l~~~l~kl~K~~kk~~~~~~~~~~~~~~f~~~L~~f 61 (652)
=..++.+|.+++.-.+||..+-...++-.+- +..++.+|+.+
T Consensus 4 ~eQlkcld~~~e~~~~lLqDlqdF~RrRAeI-------E~EYS~~L~KL 45 (253)
T cd07683 4 VEQQKCLEQQTEMRVQLLQDLQDFFRKKAEI-------ESEYSRNLEKL 45 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 3567889999999999999999888853321 24456666443
Done!