Query 006278
Match_columns 652
No_of_seqs 392 out of 1545
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 20:57:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1079 Transcriptional repres 100.0 1.2E-91 2.7E-96 768.9 24.8 470 8-650 268-739 (739)
2 KOG4442 Clathrin coat binding 100.0 1.6E-44 3.5E-49 399.9 13.3 189 415-639 67-261 (729)
3 KOG1080 Histone H3 (Lys4) meth 100.0 3.3E-32 7.1E-37 318.0 10.9 135 503-637 866-1004(1005)
4 KOG1082 Histone H3 (Lys9) meth 100.0 2.9E-29 6.2E-34 269.9 13.1 161 470-641 154-357 (364)
5 smart00317 SET SET (Su(var)3-9 99.9 9.2E-25 2E-29 192.5 11.8 113 505-617 2-116 (116)
6 KOG1083 Putative transcription 99.9 9.4E-25 2E-29 249.5 5.0 133 491-623 1165-1299(1306)
7 KOG1085 Predicted methyltransf 99.8 1.5E-19 3.2E-24 185.0 8.4 125 497-621 250-380 (392)
8 KOG1141 Predicted histone meth 99.7 9.6E-18 2.1E-22 188.5 9.2 73 564-636 1179-1260(1262)
9 COG2940 Proteins containing SE 99.6 5.1E-17 1.1E-21 180.9 3.0 144 493-636 322-478 (480)
10 PF00856 SET: SET domain; Int 99.5 6.6E-15 1.4E-19 134.7 5.3 105 514-618 1-162 (162)
11 KOG1081 Transcription factor N 99.1 4.9E-11 1.1E-15 132.7 2.1 134 491-640 302-439 (463)
12 KOG2589 Histone tail methylase 98.8 4.1E-09 8.8E-14 112.1 4.1 118 513-636 137-258 (453)
13 KOG2461 Transcription factor B 98.4 2.5E-07 5.4E-12 101.5 5.2 111 501-622 26-147 (396)
14 KOG1141 Predicted histone meth 97.3 0.00013 2.9E-09 84.4 2.7 75 461-545 767-841 (1262)
15 smart00717 SANT SANT SWI3, AD 92.8 0.27 5.9E-06 36.5 5.1 43 282-326 2-45 (49)
16 cd00167 SANT 'SWI3, ADA2, N-Co 92.6 0.29 6.2E-06 35.9 5.0 41 283-325 1-42 (45)
17 smart00570 AWS associated with 92.3 0.05 1.1E-06 43.8 0.6 11 491-501 40-50 (51)
18 PF05033 Pre-SET: Pre-SET moti 90.9 0.15 3.3E-06 45.5 2.2 38 401-438 44-103 (103)
19 smart00570 AWS associated with 84.2 0.42 9.1E-06 38.5 0.8 28 411-438 17-44 (51)
20 KOG1337 N-methyltransferase [G 82.7 0.88 1.9E-05 51.5 2.8 40 577-619 239-278 (472)
21 PF03638 TCR: Tesmin/TSO1-like 81.8 0.81 1.8E-05 35.5 1.4 29 438-466 2-30 (42)
22 KOG1171 Metallothionein-like p 79.6 0.65 1.4E-05 51.7 0.4 62 403-465 131-243 (406)
23 PF00249 Myb_DNA-binding: Myb- 79.0 5.3 0.00011 30.9 5.2 43 282-325 2-45 (48)
24 PF03638 TCR: Tesmin/TSO1-like 74.8 2.1 4.5E-05 33.3 1.8 37 402-439 2-40 (42)
25 KOG2084 Predicted histone tail 72.9 4.4 9.5E-05 44.5 4.6 39 577-619 208-247 (482)
26 KOG4442 Clathrin coat binding 72.0 1.9 4.1E-05 50.8 1.5 35 411-445 83-120 (729)
27 PF13921 Myb_DNA-bind_6: Myb-l 69.1 10 0.00023 30.3 4.9 40 284-325 1-40 (60)
28 PF05033 Pre-SET: Pre-SET moti 66.2 3.5 7.6E-05 36.7 1.7 39 440-479 47-98 (103)
29 TIGR01557 myb_SHAQKYF myb-like 60.5 21 0.00047 29.3 5.1 45 282-327 4-53 (57)
30 KOG1082 Histone H3 (Lys9) meth 57.7 7.9 0.00017 42.6 2.8 42 399-440 103-170 (364)
31 smart00508 PostSET Cysteine-ri 51.8 6.9 0.00015 27.5 0.7 15 623-637 2-16 (26)
32 KOG4167 Predicted DNA-binding 47.0 24 0.00053 42.2 4.6 42 278-321 616-660 (907)
33 PF14100 PmoA: Methane oxygena 41.3 36 0.00079 36.0 4.6 102 503-619 143-252 (271)
34 PF08666 SAF: SAF domain; Int 40.0 17 0.00036 29.1 1.4 15 600-614 3-17 (63)
35 PF00856 SET: SET domain; Int 38.7 18 0.00039 32.7 1.6 17 599-615 2-18 (162)
36 COG5259 RSC8 RSC chromatin rem 32.0 41 0.0009 38.5 3.3 44 280-325 278-322 (531)
37 COG5118 BDP1 Transcription ini 25.5 1.1E+02 0.0024 34.3 5.0 45 281-327 365-410 (507)
38 KOG1081 Transcription factor N 25.4 20 0.00044 40.9 -0.5 100 513-612 123-230 (463)
39 smart00317 SET SET (Su(var)3-9 23.0 67 0.0015 27.7 2.5 21 596-617 9-29 (116)
40 smart00468 PreSET N-terminal t 22.3 94 0.002 27.5 3.3 23 399-421 45-69 (98)
No 1
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=100.00 E-value=1.2e-91 Score=768.87 Aligned_cols=470 Identities=41% Similarity=0.703 Sum_probs=371.2
Q ss_pred HHhcchhhhccceeecccccCCCCcccccCCCCCCCCCCCCCCCCcccchhhhhhccccccccCCCCCcccccccccCCC
Q 006278 8 AQLSPLLFSLNLQVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSD 87 (652)
Q Consensus 8 ~~~f~~lfcrrclvfdcrlhgcsq~li~~~ekq~~w~~~~~d~~pcg~~cy~~~~~~~~~~~~~~~~~~~~e~~~~~s~~ 87 (652)
++-||||||||||+||||||| ||.++||+++.-.|-++-.+++|||+.||.++.+....+. +.
T Consensus 268 l~sF~tlfCrrCl~ydC~lHg-~~~~~~pn~~~r~e~~~a~~~~pc~p~~~~~l~~~~~~~m----------------~~ 330 (739)
T KOG1079|consen 268 LHSFHTLFCRRCLKYDCFLHG-SQFHAFPNTKKRKEDEPALENEPCGPGCYGLLEGAKEKTM----------------SA 330 (739)
T ss_pred hcccccceeeeeeeeeccccC-ccccccccccccCCCCccccccCCCCchhhhhhccchhhh----------------hc
Confidence 456999999999999999999 9999999999999999999999999999999965443200 00
Q ss_pred CCCCccCCCccCCCCCccccCccCccccccccccCCCCccccccccCCCccccCCCCcccccCccccccccchHHHHHHH
Q 006278 88 GAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAERAL 167 (652)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~s~~~~~sessds~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~a~~~~ 167 (652)
+.+ .. ++..|.
T Consensus 331 ~~~-~~-------------------------------------------------------~p~~g~------------- 341 (739)
T KOG1079|consen 331 VVS-KC-------------------------------------------------------PPIRGD------------- 341 (739)
T ss_pred ccc-cC-------------------------------------------------------CCCcch-------------
Confidence 000 00 011111
Q ss_pred HHHHhhhhhhhcccccccccCCCCCccccccccccccccccCCcccccCCCCCCccccccchhhhccccccccccCCCCc
Q 006278 168 VCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGSS 247 (652)
Q Consensus 168 ~~~~k~q~~~~~~d~~s~~~~~~~~~d~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (652)
++||--.+++.||. +.+...||....++..+..+..+...-... ++++ .++...
T Consensus 342 ----~~qk~~~~~~~~s~--------------~~~~~~e~~g~~~d~~v~~~~~~~~~~v~~----~~~~----~~s~~~ 395 (739)
T KOG1079|consen 342 ----IRQKLVKASSMDSD--------------DEHVEEEDKGHDDDDGVPRGFGGSVNFVGE----DDTS----THSSTN 395 (739)
T ss_pred ----hhhhhcccccCCcc--------------hhhccccccCcccccccccccccccccccC----Cccc----cccccc
Confidence 34443333444442 224456666777777666553322221110 1111 111111
Q ss_pred ccccCCCCCCCCCccchhhhhhhcccccccccCCCCCchhhhHHHHHHHHhhCCccHHHHHhhhCCCccHHHHHHHHHhc
Q 006278 248 QEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCS 327 (652)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~E~~L~~k~~~ifg~n~C~iA~~Ll~g~KtC~eV~~ym~~~ 327 (652)
..+.+ |.-.++ ....+|+++|+.||++++.+||.|+|+|||+|+ +|||++||+||..+
T Consensus 396 ~~c~~--~~~~~~------------------~~~~ew~~~ek~~fr~~~~~~~~n~c~Iar~l~--~ktC~~v~~~~~~e 453 (739)
T KOG1079|consen 396 SICQN--PVHGKK------------------DTNVEWNGAEKVLFRVGSTLYGTNRCSIARNLL--TKTCRQVYEYEQKE 453 (739)
T ss_pred ccccC--cccccC------------------CcccccchhhhHHHHhccccccchhhHHHHHhc--chHHHHHHHHhhcc
Confidence 11111 000000 125689999999999999999999999999995 59999999999976
Q ss_pred ccccccccCCccchhcccCCCCCCCCCCCCcchhhhhHHHHhhhchhcccccccCcccchhhhhcccCCCCCCCCCCCCC
Q 006278 328 ENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCG 407 (652)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~rrr~k~~~l~~~wk~~~~~~i~~~i~~~k~~~~~~~~pC~ 407 (652)
....... ... . ....+.++|++.+|++++.+++.+.|++..+++++ .|+||+
T Consensus 454 ~~~~~~~---------~~~--~-----~~~~~~~~r~~~~r~~g~~r~k~q~kk~~~~~~v~------------~~qpC~ 505 (739)
T KOG1079|consen 454 VLQGLYF---------DGR--F-----RVELPGPKRARKLRLWGRHRRKIQNKKDSRHTVVW------------NYQPCD 505 (739)
T ss_pred hhhceec---------ccc--c-----ccccCcchhhHHHHhhhhHHHhhhcccccCCceee------------ecCccc
Confidence 5332211 111 1 12357778899999999999999999988777543 355555
Q ss_pred CCCC--CCCCCcccCCCcccCCCCCCCCcccCCCcCcccCCCCccCCCCccccccccCCcccCcCcccccCCCCCCCCCC
Q 006278 408 CQTA--CGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQ 485 (652)
Q Consensus 408 c~~~--C~~~C~C~~~g~~Ce~~C~C~~~C~nRf~GC~C~~~~C~t~~CpC~~~~rECdPd~C~~C~~~Cg~~~~~~p~~ 485 (652)
|+++ |+.+|+|+.++++||+||+|+++|.|||+||+| ++||++++||||++.|||||++|..||. .+..
T Consensus 506 hp~~c~c~~~C~C~~n~~~CEk~C~C~~dC~nrF~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~cg~--------~~~~ 576 (739)
T KOG1079|consen 506 HPGPCNCGVGCPCIDNETFCEKFCYCSPDCRNRFPGCRC-KAQCNTKQCPCYLAVRECDPDVCLMCGN--------VDHF 576 (739)
T ss_pred CCCCCCCCCCCcccccCcchhhcccCCHHHHhcCCCCCc-ccccccCcCchhhhccccCchHHhccCc--------cccc
Confidence 5544 468999999999999999999999999999999 9999999999999999999999999985 2344
Q ss_pred CCCcccccchHhhhcccceEEEEEcCCCccEEEeccccCCCceEEEecceecCHHHHhhhhccccccCCcccccCCccEE
Q 006278 486 KGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFV 565 (652)
Q Consensus 486 ~~~~~~C~N~~lq~g~~k~v~V~~S~~kG~GLfA~edI~kGefI~EY~GEiIs~~Ea~~R~~~yd~~~~sYlf~l~~~~v 565 (652)
++..+.|+|+.+|++++++|.|++|.+.|||||+++.+.|++||.||+||+|+++||++|+++|+..+.+|+|+|+++++
T Consensus 577 d~~~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnln~dyv 656 (739)
T KOG1079|consen 577 DSSKISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNLNNDYV 656 (739)
T ss_pred ccCccccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeeccccce
Confidence 66778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccCCccccccCCCCCCcceEEEEEcCeeEEEEEEccCCCCCCeEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCc
Q 006278 566 LDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEASGSKKEEGGPSS 645 (652)
Q Consensus 566 IDA~~~GN~aRFINHSC~PNc~~~~v~v~G~~rI~~fA~RDI~aGEELTfDYg~~~d~~pC~Cgsp~CrG~kk~~~~~~~ 645 (652)
|||+++||.+||+|||-+|||++.+++|+|+|||+|||+|+|.+||||||||+|+.++++-|-+.+. +.+|.+....+
T Consensus 657 iDs~rkGnk~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs~~~~~k~~~~~~--~s~k~e~~~~q 734 (739)
T KOG1079|consen 657 IDSTRKGNKIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYSPEHALKFVGIER--ESYKVELKIFQ 734 (739)
T ss_pred EeeeeecchhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccCccccccccccCc--cccccchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999988887 77888877776
Q ss_pred cchhc
Q 006278 646 GRAKK 650 (652)
Q Consensus 646 ~raKk 650 (652)
..++|
T Consensus 735 ~~~~~ 739 (739)
T KOG1079|consen 735 ATQQK 739 (739)
T ss_pred hhcCC
Confidence 66654
No 2
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-44 Score=399.88 Aligned_cols=189 Identities=31% Similarity=0.593 Sum_probs=169.6
Q ss_pred CCcccC-CCcccCCCCCCCCcccCCCcCcccCCCCccCCCCccccccccCCcccCcCcccccCCCCCCCCCCCCCccccc
Q 006278 415 QCPCLL-NGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECR 493 (652)
Q Consensus 415 ~C~C~~-~g~~Ce~~C~C~~~C~nRf~GC~C~~~~C~t~~CpC~~~~rECdPd~C~~C~~~Cg~~~~~~p~~~~~~~~C~ 493 (652)
.|.|.. .+.-=...|.|+.+|.||+. ..||.++.|..||. .|+
T Consensus 67 ~Cdc~~~~~d~~n~~~~cg~~CiNr~t-------------------~iECs~~~C~~cg~-----------------~C~ 110 (729)
T KOG4442|consen 67 ICDCKPKTGDGANGACACGEDCINRMT-------------------SIECSDRECPRCGV-----------------YCK 110 (729)
T ss_pred eeecccccccccccccccCccccchhh-------------------hcccCCccCCCccc-----------------ccc
Confidence 344433 33333578999999999995 56888888887653 799
Q ss_pred chHhhhcccceEEEEEcCCCccEEEeccccCCCceEEEecceecCHHHHhhhhccccccC--CcccccCCccEEEecccc
Q 006278 494 NMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN--SSFLFNLNDQFVLDAYRK 571 (652)
Q Consensus 494 N~~lq~g~~k~v~V~~S~~kG~GLfA~edI~kGefI~EY~GEiIs~~Ea~~R~~~yd~~~--~sYlf~l~~~~vIDA~~~ 571 (652)
|++||+.+..+|+||.+..+||||+|.++|++|+||+||.||||+..|+++|...|+..+ ++|+|.|....+||||.+
T Consensus 111 NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm~L~~~e~IDAT~K 190 (729)
T KOG4442|consen 111 NQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIKHYYFMALQGGEYIDATKK 190 (729)
T ss_pred chhhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCceEEEEEecCCceeccccc
Confidence 999999999999999999999999999999999999999999999999999999998875 588999999999999999
Q ss_pred CCccccccCCCCCCcceEEEEEcCeeEEEEEEccCCCCCCeEEEecCCC---CCCCCcccCCCCCCCCCCC
Q 006278 572 GDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYE---PDRAPAWARKPEASGSKKE 639 (652)
Q Consensus 572 GN~aRFINHSC~PNc~~~~v~v~G~~rI~~fA~RDI~aGEELTfDYg~~---~d~~pC~Cgsp~CrG~kk~ 639 (652)
||++|||||||+|||++++|.|+|..||||||.|.|.+||||||||+++ .+.++|+||+++|+|.--.
T Consensus 191 GnlaRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyCgeanC~G~IGg 261 (729)
T KOG4442|consen 191 GNLARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYCGEANCRGWIGG 261 (729)
T ss_pred CcHHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecccccccccccccccCCcccccccCC
Confidence 9999999999999999999999999999999999999999999999854 5788999999999997433
No 3
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=3.3e-32 Score=317.96 Aligned_cols=135 Identities=43% Similarity=0.794 Sum_probs=128.3
Q ss_pred ceEEEEEcCCCccEEEeccccCCCceEEEecceecCHHHHhhhhccccccC--CcccccCCccEEEeccccCCccccccC
Q 006278 503 QRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN--SSFLFNLNDQFVLDAYRKGDKLKFANH 580 (652)
Q Consensus 503 k~v~V~~S~~kG~GLfA~edI~kGefI~EY~GEiIs~~Ea~~R~~~yd~~~--~sYlf~l~~~~vIDA~~~GN~aRFINH 580 (652)
+.|..+++.+|||||||++.|.+|++|+||+||+|...-++.|+..|...+ .+|||.+++..||||+.+||+||||||
T Consensus 866 k~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~~~ViDAtk~gniAr~InH 945 (1005)
T KOG1080|consen 866 KYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDDEVVVDATKKGNIARFINH 945 (1005)
T ss_pred hhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecccceEEeccccCchhheeec
Confidence 458899999999999999999999999999999999999999999998875 699999999999999999999999999
Q ss_pred CCCCCcceEEEEEcCeeEEEEEEccCCCCCCeEEEecCCCC--CCCCcccCCCCCCCCC
Q 006278 581 SPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEP--DRAPAWARKPEASGSK 637 (652)
Q Consensus 581 SC~PNc~~~~v~v~G~~rI~~fA~RDI~aGEELTfDYg~~~--d~~pC~Cgsp~CrG~k 637 (652)
||+|||+++++.|+|+.+|+|||.|+|.+||||||||.|.. +..||+||+|+|||.-
T Consensus 946 sC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e~~kipClCgap~Crg~~ 1004 (1005)
T KOG1080|consen 946 SCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTEDDKIPCLCGAPNCRGFL 1004 (1005)
T ss_pred ccCCCceeeEEEecCeeEEEEEEecccccCceeeeeccccccccccccccCCCcccccc
Confidence 99999999999999999999999999999999999999865 4679999999999973
No 4
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=2.9e-29 Score=269.88 Aligned_cols=161 Identities=25% Similarity=0.403 Sum_probs=133.1
Q ss_pred CcccccCCCCCCCCCCCCCcccccchHhhhcccceEEEEEcCCCccEEEeccccCCCceEEEecceecCHHHHhhhhccc
Q 006278 470 NCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIY 549 (652)
Q Consensus 470 ~C~~~Cg~~~~~~p~~~~~~~~C~N~~lq~g~~k~v~V~~S~~kG~GLfA~edI~kGefI~EY~GEiIs~~Ea~~R~~~y 549 (652)
+|+..|+++. .|.|+.+|.+...+|+|++++.+||||++.+.|++|+||+||+||+++..|+++|...+
T Consensus 154 EC~~~C~C~~-----------~C~nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~ 222 (364)
T KOG1082|consen 154 ECSVACGCHP-----------DCANRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLR 222 (364)
T ss_pred ccccCCCCCC-----------cCcchhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhccccc
Confidence 5666777753 79999999999999999999999999999999999999999999999999999874322
Q ss_pred ccc----CCcccc---------------------cCCccEEEeccccCCccccccCCCCCCcceEEEEEcCe----eEEE
Q 006278 550 DRE----NSSFLF---------------------NLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGD----HRVG 600 (652)
Q Consensus 550 d~~----~~sYlf---------------------~l~~~~vIDA~~~GN~aRFINHSC~PNc~~~~v~v~G~----~rI~ 600 (652)
+.. +..+.+ .....++|||...||++|||||||.||+.+..++.++. ++|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ 302 (364)
T KOG1082|consen 223 EYLDDDCDAYSIADREWVDESPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIG 302 (364)
T ss_pred cccccccccchhhhccccccccccccccccccccCCCcceEEchhhcccccccccCCCCccceeeeeeecCCccchheee
Confidence 221 111122 11357899999999999999999999999988887743 6999
Q ss_pred EEEccCCCCCCeEEEecCCCC--------------CCCCcccCCCCCCCCCCCCC
Q 006278 601 IFAKERISAGEELFYDYRYEP--------------DRAPAWARKPEASGSKKEEG 641 (652)
Q Consensus 601 ~fA~RDI~aGEELTfDYg~~~--------------d~~pC~Cgsp~CrG~kk~~~ 641 (652)
|||+++|.||||||||||... ....|.|+...|++......
T Consensus 303 ffa~~~I~p~~ELT~dYg~~~~~~~~~~~~~~~~~~~~~c~c~~~~cr~~~~~~~ 357 (364)
T KOG1082|consen 303 FFALRDISPGEELTLDYGKAYKLLVQDGANIYTPVMKKNCNCGLEKCRGLLGSAP 357 (364)
T ss_pred eeeccccCCCcccchhhcccccccccccccccccccchhhcCCCHHhCcccCCCc
Confidence 999999999999999999552 34468999999998755544
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.92 E-value=9.2e-25 Score=192.51 Aligned_cols=113 Identities=42% Similarity=0.744 Sum_probs=101.9
Q ss_pred EEEEEcCCCccEEEeccccCCCceEEEecceecCHHHHhhhhccccccC--CcccccCCccEEEeccccCCccccccCCC
Q 006278 505 VLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN--SSFLFNLNDQFVLDAYRKGDKLKFANHSP 582 (652)
Q Consensus 505 v~V~~S~~kG~GLfA~edI~kGefI~EY~GEiIs~~Ea~~R~~~yd~~~--~sYlf~l~~~~vIDA~~~GN~aRFINHSC 582 (652)
+++..++.+|+||||+++|++|++|++|.|.++...++..+...+.... ..|+|.+...++||+...||++|||||||
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~iNHsc 81 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDSDLCIDARRKGNIARFINHSC 81 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCCCEEEeCCccCcHHHeeCCCC
Confidence 5677888999999999999999999999999999999887654444444 48899988889999999999999999999
Q ss_pred CCCcceEEEEEcCeeEEEEEEccCCCCCCeEEEec
Q 006278 583 DPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDY 617 (652)
Q Consensus 583 ~PNc~~~~v~v~G~~rI~~fA~RDI~aGEELTfDY 617 (652)
.||+.+..+..++..+|.|+|+|||++|||||+||
T Consensus 82 ~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 82 EPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 99999998888888899999999999999999999
No 6
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.90 E-value=9.4e-25 Score=249.46 Aligned_cols=133 Identities=29% Similarity=0.582 Sum_probs=123.1
Q ss_pred cccchHhhh-cccceEEEEEcCCCccEEEeccccCCCceEEEecceecCHHHHhhh-hccccccCCcccccCCccEEEec
Q 006278 491 ECRNMKLLL-KQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKR-GKIYDRENSSFLFNLNDQFVLDA 568 (652)
Q Consensus 491 ~C~N~~lq~-g~~k~v~V~~S~~kG~GLfA~edI~kGefI~EY~GEiIs~~Ea~~R-~~~yd~~~~sYlf~l~~~~vIDA 568 (652)
.|.|+.+++ +.-.+|+|++.+..||||.|.++|++|+||+||+||||+..+.+.| ..+|.....+|+..+..+.+||+
T Consensus 1165 ~c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~d~~~~cL~I~p~l~id~ 1244 (1306)
T KOG1083|consen 1165 SCSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHNDDDHYCLVIDPGLFIDI 1244 (1306)
T ss_pred hhhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCCCCCcccccccCccccCCh
Confidence 377777776 4567899999999999999999999999999999999999999888 67788888899999999999999
Q ss_pred cccCCccccccCCCCCCcceEEEEEcCeeEEEEEEccCCCCCCeEEEecCCCCCC
Q 006278 569 YRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDR 623 (652)
Q Consensus 569 ~~~GN~aRFINHSC~PNc~~~~v~v~G~~rI~~fA~RDI~aGEELTfDYg~~~d~ 623 (652)
.++||.+|||||+|.|||.++.|.|+|..||++||+|||.+||||||||++..+.
T Consensus 1245 ~R~~n~~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks~~ 1299 (1306)
T KOG1083|consen 1245 PRMGNGARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKSFN 1299 (1306)
T ss_pred hhccccccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEeccccccC
Confidence 9999999999999999999999999999999999999999999999999865543
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.79 E-value=1.5e-19 Score=184.97 Aligned_cols=125 Identities=27% Similarity=0.437 Sum_probs=108.4
Q ss_pred hhhcccceEEEEEcCCCccEEEeccccCCCceEEEecceecCHHHHhhhhccccccCC--ccc--c-cCCccEEEecccc
Q 006278 497 LLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENS--SFL--F-NLNDQFVLDAYRK 571 (652)
Q Consensus 497 lq~g~~k~v~V~~S~~kG~GLfA~edI~kGefI~EY~GEiIs~~Ea~~R~~~yd~~~~--sYl--f-~l~~~~vIDA~~~ 571 (652)
++.+....+.+..-.++|.||+|+..+.+|+||.||.|.+|...|+..|+..|..... .|| | .++..|+|||+.-
T Consensus 250 vl~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~sk~yCiDAT~e 329 (392)
T KOG1085|consen 250 VLKGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHNSKKYCIDATKE 329 (392)
T ss_pred HHhccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeeccCeeeeeecccc
Confidence 4455566777777788999999999999999999999999999999999998876643 344 4 3467899999975
Q ss_pred C-CccccccCCCCCCcceEEEEEcCeeEEEEEEccCCCCCCeEEEecCCCC
Q 006278 572 G-DKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEP 621 (652)
Q Consensus 572 G-N~aRFINHSC~PNc~~~~v~v~G~~rI~~fA~RDI~aGEELTfDYg~~~ 621 (652)
- -++|.||||-.+||.++++.++|.+++.++|.|||.+||||+||||...
T Consensus 330 t~~lGRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRS 380 (392)
T KOG1085|consen 330 TPWLGRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRS 380 (392)
T ss_pred cccchhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccc
Confidence 5 4679999999999999999999999999999999999999999999543
No 8
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.72 E-value=9.6e-18 Score=188.54 Aligned_cols=73 Identities=32% Similarity=0.567 Sum_probs=67.9
Q ss_pred EEEeccccCCccccccCCCCCCcceEEEEEcCe----eEEEEEEccCCCCCCeEEEecCCCCCCC-----CcccCCCCCC
Q 006278 564 FVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGD----HRVGIFAKERISAGEELFYDYRYEPDRA-----PAWARKPEAS 634 (652)
Q Consensus 564 ~vIDA~~~GN~aRFINHSC~PNc~~~~v~v~G~----~rI~~fA~RDI~aGEELTfDYg~~~d~~-----pC~Cgsp~Cr 634 (652)
|+|||...||++||+||||.||+.++.|+|+-. +.|+|||.+-|+||+||||||+|+.... .|.||..+||
T Consensus 1179 yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~Cr 1258 (1262)
T KOG1141|consen 1179 YVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCR 1258 (1262)
T ss_pred EEEecccccchhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecChhhhh
Confidence 799999999999999999999999999999854 6899999999999999999999988755 4999999999
Q ss_pred CC
Q 006278 635 GS 636 (652)
Q Consensus 635 G~ 636 (652)
|.
T Consensus 1259 gr 1260 (1262)
T KOG1141|consen 1259 GR 1260 (1262)
T ss_pred cc
Confidence 84
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.64 E-value=5.1e-17 Score=180.91 Aligned_cols=144 Identities=35% Similarity=0.513 Sum_probs=119.1
Q ss_pred cchHhhhcccceEEEEEcCCCccEEEeccccCCCceEEEecceecCHHHHhhhhccccccCCcccc-cCCc-cEEEeccc
Q 006278 493 RNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLF-NLND-QFVLDAYR 570 (652)
Q Consensus 493 ~N~~lq~g~~k~v~V~~S~~kG~GLfA~edI~kGefI~EY~GEiIs~~Ea~~R~~~yd~~~~sYlf-~l~~-~~vIDA~~ 570 (652)
.|............+..+...|||+||.+.|++|++|.+|.|+++...++..+...+...+..+.| .+.+ ..++|+..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 401 (480)
T COG2940 322 LNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEFSFGLLEDKDKVRDSQK 401 (480)
T ss_pred hhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccccchhhccccchhhhhhh
Confidence 333333444556677788889999999999999999999999999999999988777555544444 3333 78999999
Q ss_pred cCCccccccCCCCCCcceEEEEEcCeeEEEEEEccCCCCCCeEEEecCCCCCC-----------CCcccCCCCCCCC
Q 006278 571 KGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDR-----------APAWARKPEASGS 636 (652)
Q Consensus 571 ~GN~aRFINHSC~PNc~~~~v~v~G~~rI~~fA~RDI~aGEELTfDYg~~~d~-----------~pC~Cgsp~CrG~ 636 (652)
.|+.+|||||||.||+.+....++|..++.++|+|||.+||||++||+...+. ..|.|+.+.|++.
T Consensus 402 ~g~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (480)
T COG2940 402 AGDVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHT 478 (480)
T ss_pred cccccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCC
Confidence 99999999999999999988888887899999999999999999999865533 3588999999875
No 10
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.53 E-value=6.6e-15 Score=134.69 Aligned_cols=105 Identities=20% Similarity=0.156 Sum_probs=73.7
Q ss_pred ccEEEeccccCCCceEEEecceecCHHHHhhh---hccccc---------------------------------------
Q 006278 514 GWGAFLKNSVGKHEYLGEYTGELISHREADKR---GKIYDR--------------------------------------- 551 (652)
Q Consensus 514 G~GLfA~edI~kGefI~EY~GEiIs~~Ea~~R---~~~yd~--------------------------------------- 551 (652)
|+||||+++|++|++|+++.+.+|+..+.... ...+..
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSPQPELLRLQLSKALEEQSRSDFSIQKKQKAEKSERSPQLESLHSISLRSE 80 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHCHHHHSHHTTCSSSCSHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHTTT
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhhcccchhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999998877541 000000
Q ss_pred cCCcc---------------cccCCccEEEeccccCCccccccCCCCCCcceEEEEEcCeeEEEEEEccCCCCCCeEEEe
Q 006278 552 ENSSF---------------LFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYD 616 (652)
Q Consensus 552 ~~~sY---------------lf~l~~~~vIDA~~~GN~aRFINHSC~PNc~~~~v~v~G~~rI~~fA~RDI~aGEELTfD 616 (652)
....+ ..........++.....++.|+||||.|||.+..........+.|+|.|||++|||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~is 160 (162)
T PF00856_consen 81 LQFSQAFQWSWFISWTRSDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFIS 160 (162)
T ss_dssp CCTCCHHHHHHHHHHHHHEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEE
T ss_pred ccccccccchhhccccceeeeccccccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEE
Confidence 00000 000011234556667789999999999999887776667889999999999999999999
Q ss_pred cC
Q 006278 617 YR 618 (652)
Q Consensus 617 Yg 618 (652)
||
T Consensus 161 YG 162 (162)
T PF00856_consen 161 YG 162 (162)
T ss_dssp ST
T ss_pred EC
Confidence 98
No 11
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=99.05 E-value=4.9e-11 Score=132.69 Aligned_cols=134 Identities=26% Similarity=0.408 Sum_probs=105.6
Q ss_pred cccchHhhhcccceEEEEEcCCCccEEEeccccCCCceEEEecceecCHHHHhhhhcccccc--CCcccccCCccEEEec
Q 006278 491 ECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRE--NSSFLFNLNDQFVLDA 568 (652)
Q Consensus 491 ~C~N~~lq~g~~k~v~V~~S~~kG~GLfA~edI~kGefI~EY~GEiIs~~Ea~~R~~~yd~~--~~sYlf~l~~~~vIDA 568 (652)
.|.|+.+....... . .+ +|..+|.+| +|++|+..+...|...-... ...|+..+..+..||+
T Consensus 302 ~~~~~~~sk~~~~e------~-~~---~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~id~ 365 (463)
T KOG1081|consen 302 RCHNQQFSKESYPE------P-QK---TAKADIRKG------VGEVIDDKECKARLQRVKESDLVDFYMVFIQKDRIIDA 365 (463)
T ss_pred ccccchhhhhcccc------c-ch---hhHHhhhcc------cCcccchhhheeehhhhhccchhhhhhhhhhccccccc
Confidence 78888776655443 1 12 889999999 89999999988775332222 2344444444449999
Q ss_pred cccCCccccccCCCCCCcceEEEEEcCeeEEEEEEccCCCCCCeEEEecCCCC--CCCCcccCCCCCCCCCCCC
Q 006278 569 YRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEP--DRAPAWARKPEASGSKKEE 640 (652)
Q Consensus 569 ~~~GN~aRFINHSC~PNc~~~~v~v~G~~rI~~fA~RDI~aGEELTfDYg~~~--d~~pC~Cgsp~CrG~kk~~ 640 (652)
.++||.+||+||||+||+....|.+.++.++++||.+.|++||||||+|.+.. ....|.|+...|.+++...
T Consensus 366 ~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~~~~~~~~~~~~~e~~~~~~~k~ 439 (463)
T KOG1081|consen 366 GPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGNCEGNEKRCCCGSENCTETKGKK 439 (463)
T ss_pred ccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeeccccCCcceEeecccccccCCccc
Confidence 99999999999999999999999999999999999999999999999998764 3446888888888875443
No 12
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.77 E-value=4.1e-09 Score=112.07 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=85.1
Q ss_pred CccEEEeccccCCCceEEEecceecCHHHHhhhhccccccCC-cccccCCccEEEeccccCCccccccCCCCCCcceEEE
Q 006278 513 SGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENS-SFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVI 591 (652)
Q Consensus 513 kG~GLfA~edI~kGefI~EY~GEiIs~~Ea~~R~~~yd~~~~-sYlf~l~~~~vIDA~~~GN~aRFINHSC~PNc~~~~v 591 (652)
.|--|.+++.+.+|+-|-..+|-|+...|++++.-.....++ +-||.-... -|...-..++||||-|.|||.+.
T Consensus 137 ~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDFSvmyStRk~---caqLwLGPaafINHDCrpnCkFv-- 211 (453)
T KOG2589|consen 137 NGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDFSVMYSTRKR---CAQLWLGPAAFINHDCRPNCKFV-- 211 (453)
T ss_pred CCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCceeeeeecccc---hhhheeccHHhhcCCCCCCceee--
Confidence 477899999999999999999999988888887433222222 223322111 12223367899999999999653
Q ss_pred EEcCeeEEEEEEccCCCCCCeEEEecCCCC---CCCCcccCCCCCCCC
Q 006278 592 MVAGDHRVGIFAKERISAGEELFYDYRYEP---DRAPAWARKPEASGS 636 (652)
Q Consensus 592 ~v~G~~rI~~fA~RDI~aGEELTfDYg~~~---d~~pC~Cgsp~CrG~ 636 (652)
..|..++.|-++|||+||||||--||.+. ...-|.|-+-+-+|.
T Consensus 212 -s~g~~tacvkvlRDIePGeEITcFYgs~fFG~~N~~CeC~TCER~g~ 258 (453)
T KOG2589|consen 212 -STGRDTACVKVLRDIEPGEEITCFYGSGFFGENNEECECVTCERRGT 258 (453)
T ss_pred -cCCCceeeeehhhcCCCCceeEEeecccccCCCCceeEEeecccccc
Confidence 35778899999999999999999998443 455677766555553
No 13
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=98.40 E-value=2.5e-07 Score=101.50 Aligned_cols=111 Identities=18% Similarity=0.268 Sum_probs=83.9
Q ss_pred ccceEEEEEcCC--CccEEEeccccCCCceEEEecceecCHHHHhhhhccccccCCcccccC---C-ccEEEecc--ccC
Q 006278 501 QQQRVLLGRSDV--SGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNL---N-DQFVLDAY--RKG 572 (652)
Q Consensus 501 ~~k~v~V~~S~~--kG~GLfA~edI~kGefI~EY~GEiIs~~Ea~~R~~~yd~~~~sYlf~l---~-~~~vIDA~--~~G 572 (652)
....|.|..|.+ .|.||++...|.+|+-.+-|.|+++... .. ...+..|+|.+ + ..++||++ ...
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~-~~------~~~n~~y~W~I~~~d~~~~~iDg~d~~~s 98 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASI-DS------KSANNRYMWEIFSSDNGYEYIDGTDEEHS 98 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCcccccc-cc------ccccCcceEEEEeCCCceEEeccCChhhc
Confidence 567889988877 6899999999999999999999981111 11 12345566654 2 34899987 568
Q ss_pred CccccccCCCC---CCcceEEEEEcCeeEEEEEEccCCCCCCeEEEecCCCCC
Q 006278 573 DKLKFANHSPD---PNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPD 622 (652)
Q Consensus 573 N~aRFINHSC~---PNc~~~~v~v~G~~rI~~fA~RDI~aGEELTfDYg~~~d 622 (652)
||+||+|=+++ -|+.+-. ....|.++|+|+|.+||||.++|+-+..
T Consensus 99 NWmRYV~~Ar~~eeQNL~A~Q----~~~~Ifyrt~r~I~p~eELlVWY~~e~~ 147 (396)
T KOG2461|consen 99 NWMRYVNSARSEEEQNLLAFQ----IGENIFYRTIRDIRPNEELLVWYGSEYA 147 (396)
T ss_pred ceeeeecccCChhhhhHHHHh----ccCceEEEecccCCCCCeEEEEeccchH
Confidence 99999998884 5765532 2345889999999999999999986553
No 14
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=97.27 E-value=0.00013 Score=84.44 Aligned_cols=75 Identities=21% Similarity=0.312 Sum_probs=60.9
Q ss_pred ccCCcccCcCcccccCCCCCCCCCCCCCcccccchHhhhcccceEEEEEcCCCccEEEeccccCCCceEEEecceecCHH
Q 006278 461 RECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHR 540 (652)
Q Consensus 461 rECdPd~C~~C~~~Cg~~~~~~p~~~~~~~~C~N~~lq~g~~k~v~V~~S~~kG~GLfA~edI~kGefI~EY~GEiIs~~ 540 (652)
.||-|.-=.+|...|.+. ...|.|+.+|.|.+.++.++++..+|||++...+|.+|.||+-|.|.++++.
T Consensus 767 ~e~~ptg~yEc~k~ckc~----------~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~~ 836 (1262)
T KOG1141|consen 767 IEIRPTGPYECLKACKCC----------GPDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLHQ 836 (1262)
T ss_pred HHhcCCCHHHHHHhhccC----------cHHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhhhh
Confidence 345554444555555432 2379999999999999999999999999999999999999999999999888
Q ss_pred HHhhh
Q 006278 541 EADKR 545 (652)
Q Consensus 541 Ea~~R 545 (652)
-++.-
T Consensus 837 ~sdks 841 (1262)
T KOG1141|consen 837 ISDKS 841 (1262)
T ss_pred hchhh
Confidence 77654
No 15
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=92.76 E-value=0.27 Score=36.53 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=38.0
Q ss_pred CCCchhhhHHHHHHHHhhC-CccHHHHHhhhCCCccHHHHHHHHHh
Q 006278 282 KSWKTIEKGLFDKGVEIFG-RNSCLIARNLLNGLKTCWEVFQYMTC 326 (652)
Q Consensus 282 ~~W~~~E~~L~~k~~~ifg-~n~C~iA~~Ll~g~KtC~eV~~ym~~ 326 (652)
..|++.|..+|..++..|| .+.-.||..| +.+|-.+|..+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~--~~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKEL--PGRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHc--CCCCHHHHHHHHHH
Confidence 4699999999999999999 9999999987 57999999877653
No 16
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=92.59 E-value=0.29 Score=35.91 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=36.6
Q ss_pred CCchhhhHHHHHHHHhhC-CccHHHHHhhhCCCccHHHHHHHHH
Q 006278 283 SWKTIEKGLFDKGVEIFG-RNSCLIARNLLNGLKTCWEVFQYMT 325 (652)
Q Consensus 283 ~W~~~E~~L~~k~~~ifg-~n~C~iA~~Ll~g~KtC~eV~~ym~ 325 (652)
.||..|..+|..++..|| .+...||+.+ +.||-.+|-.+..
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~--~~rs~~~~~~~~~ 42 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL--PGRTPKQCRERWR 42 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc--CCCCHHHHHHHHH
Confidence 599999999999999999 8999999987 5699999987764
No 17
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=92.29 E-value=0.05 Score=43.77 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=9.4
Q ss_pred cccchHhhhcc
Q 006278 491 ECRNMKLLLKQ 501 (652)
Q Consensus 491 ~C~N~~lq~g~ 501 (652)
.|+|+.||+++
T Consensus 40 ~C~NqrFqk~~ 50 (51)
T smart00570 40 YCSNQRFQKRQ 50 (51)
T ss_pred CccCcccccCc
Confidence 79999998875
No 18
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=90.91 E-value=0.15 Score=45.46 Aligned_cols=38 Identities=37% Similarity=1.024 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCC--CCCCcccCCCc--------------------ccCCCCCCCCcccCC
Q 006278 401 RQYNPCGCQTAC--GKQCPCLLNGT--------------------CCEKYCGCPKSCKNR 438 (652)
Q Consensus 401 ~~~~pC~c~~~C--~~~C~C~~~g~--------------------~Ce~~C~C~~~C~nR 438 (652)
.....|+|.+.| ...|.|..... +|...|+|+..|.||
T Consensus 44 ~~~~~C~C~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 44 EFLQGCDCSGDCSNPSNCECLQRNGGIFAYDSNGRLRIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp GGTS----SSSSTCTTTSHHHCCTSSS-SB-TTSSBSSSSTSEEE---TTSSS-TTSTT-
T ss_pred ccCccCccCCCCCCCCCCcCccccCccccccCCCcCccCCCCeEEeCCCCCCCCCCCCCC
Confidence 345689999889 47899986441 799999999999987
No 19
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=84.25 E-value=0.42 Score=38.54 Aligned_cols=28 Identities=32% Similarity=0.743 Sum_probs=18.5
Q ss_pred CCCCCCcccCCCcccCCCCCCCCcccCC
Q 006278 411 ACGKQCPCLLNGTCCEKYCGCPKSCKNR 438 (652)
Q Consensus 411 ~C~~~C~C~~~g~~Ce~~C~C~~~C~nR 438 (652)
+|+++|.....-++|...|.|+..|.|+
T Consensus 17 ~CgsdClNR~l~~EC~~~C~~G~~C~Nq 44 (51)
T smart00570 17 ACGSDCLNRMLLIECSSDCPCGSYCSNQ 44 (51)
T ss_pred CcchHHHHHHHhhhcCCCCCCCcCccCc
Confidence 5666666666666666677777777664
No 20
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=82.71 E-value=0.88 Score=51.52 Aligned_cols=40 Identities=38% Similarity=0.527 Sum_probs=31.1
Q ss_pred cccCCCCCCcceEEEEEcCeeEEEEEEccCCCCCCeEEEecCC
Q 006278 577 FANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRY 619 (652)
Q Consensus 577 FINHSC~PNc~~~~v~v~G~~rI~~fA~RDI~aGEELTfDYg~ 619 (652)
+.||++++. ...+..-+..+-+++.++|.+||||+++||.
T Consensus 239 ~~NH~~~~~---~~~~~~~d~~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 239 LLNHSPEVI---KAGYNQEDEAVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred hhccCchhc---cccccCCCCcEEEEEeeeecCCCeEEEecCC
Confidence 579999882 2223333458999999999999999999985
No 21
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=81.75 E-value=0.81 Score=35.53 Aligned_cols=29 Identities=45% Similarity=1.134 Sum_probs=26.3
Q ss_pred CCcCcccCCCCccCCCCccccccccCCcc
Q 006278 438 RFRGCHCAKSQCRSRQCPCFAADRECDPD 466 (652)
Q Consensus 438 Rf~GC~C~~~~C~t~~CpC~~~~rECdPd 466 (652)
...||.|.++.|...-|.||++++.|.+.
T Consensus 2 ~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~ 30 (42)
T PF03638_consen 2 KKKGCNCKKSKCLKLYCECFQAGRFCTPN 30 (42)
T ss_pred CCCCCcccCcChhhhhCHHHHCcCcCCCC
Confidence 35799999999999999999999999985
No 22
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=79.56 E-value=0.65 Score=51.69 Aligned_cols=62 Identities=34% Similarity=0.974 Sum_probs=50.3
Q ss_pred CCCCCCC-CCCC-CCCcccCCCcccCCCCCCCCcccCCC-----------------------------------------
Q 006278 403 YNPCGCQ-TACG-KQCPCLLNGTCCEKYCGCPKSCKNRF----------------------------------------- 439 (652)
Q Consensus 403 ~~pC~c~-~~C~-~~C~C~~~g~~Ce~~C~C~~~C~nRf----------------------------------------- 439 (652)
-.+|.|+ ..|- -.|.|...|.+|..+|.|- +|.|..
T Consensus 131 k~~~~ck~SkclklYCeCFAsG~yC~~~CnCv-nC~N~~~~e~~r~~a~k~~l~RNP~AFkPKia~s~~~~~da~~~~~~ 209 (406)
T KOG1171|consen 131 KKKCNCKKSKCLKLYCECFASGVYCTGPCNCV-NCFNNPEHESVRLKARKQILERNPNAFKPKIAASSSGIADASEEASK 209 (406)
T ss_pred ccCCCchHHHHHHHhHHHHhhcccccCCccee-eccCCCcchHHHHHHHHHHhhcCccccccccccCCcccchhhhhhhc
Confidence 3445554 3444 4699999999999999998 777763
Q ss_pred --------cCcccCCCCccCCCCccccccccCCc
Q 006278 440 --------RGCHCAKSQCRSRQCPCFAADRECDP 465 (652)
Q Consensus 440 --------~GC~C~~~~C~t~~CpC~~~~rECdP 465 (652)
.||+|.+..|..+-|.||+++.-|-.
T Consensus 210 ~~~sa~hkkGC~CkkSgClKkYCECyQa~vlCS~ 243 (406)
T KOG1171|consen 210 TPASARHKKGCNCKKSGCLKKYCECYQAGVLCSS 243 (406)
T ss_pred cchhhhhcCCCCCccccchHHHHHHHhcCCCccc
Confidence 68999999999999999999988854
No 23
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=78.97 E-value=5.3 Score=30.88 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=33.8
Q ss_pred CCCchhhhHHHHHHHHhhCCc-cHHHHHhhhCCCccHHHHHHHHH
Q 006278 282 KSWKTIEKGLFDKGVEIFGRN-SCLIARNLLNGLKTCWEVFQYMT 325 (652)
Q Consensus 282 ~~W~~~E~~L~~k~~~ifg~n-~C~iA~~Ll~g~KtC~eV~~ym~ 325 (652)
..||+-|..+|..++..||.+ .=.||..+. +.||=.++-.+.+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~-~~Rt~~qc~~~~~ 45 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP-GGRTAKQCRSRYQ 45 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS-SSSTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC-CCCCHHHHHHHHH
Confidence 469999999999999999998 889998772 3788777765543
No 24
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=74.81 E-value=2.1 Score=33.33 Aligned_cols=37 Identities=32% Similarity=0.923 Sum_probs=31.1
Q ss_pred CCCCCCCC-CCCC-CCCcccCCCcccCCCCCCCCcccCCC
Q 006278 402 QYNPCGCQ-TACG-KQCPCLLNGTCCEKYCGCPKSCKNRF 439 (652)
Q Consensus 402 ~~~pC~c~-~~C~-~~C~C~~~g~~Ce~~C~C~~~C~nRf 439 (652)
+..+|.|. ..|- .-|.|...|.+|...|.|. +|.|..
T Consensus 2 ~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~C~C~-~C~N~~ 40 (42)
T PF03638_consen 2 KKKGCNCKKSKCLKLYCECFQAGRFCTPNCKCQ-NCKNTE 40 (42)
T ss_pred CCCCCcccCcChhhhhCHHHHCcCcCCCCcccC-CCCCcC
Confidence 45689995 7887 5799999999999999994 888864
No 25
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=72.90 E-value=4.4 Score=44.50 Aligned_cols=39 Identities=33% Similarity=0.475 Sum_probs=28.3
Q ss_pred cccCCCCCCcceEEEEEcCeeEEEEEEccCCCCCC-eEEEecCC
Q 006278 577 FANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGE-ELFYDYRY 619 (652)
Q Consensus 577 FINHSC~PNc~~~~v~v~G~~rI~~fA~RDI~aGE-ELTfDYg~ 619 (652)
++||||.||+. +..++.. +.+++..++.+++ ||+..|-.
T Consensus 208 ~~~hsC~pn~~---~~~~~~~-~~~~~~~~~~~~~~~l~~~y~~ 247 (482)
T KOG2084|consen 208 LFNHSCFPNIS---VIFDGRG-LALLVPAGIDAGEEELTISYTD 247 (482)
T ss_pred hcccCCCCCeE---EEECCce-eEEEeecccCCCCCEEEEeecc
Confidence 78999999986 3445554 4455667777776 99999953
No 26
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.03 E-value=1.9 Score=50.76 Aligned_cols=35 Identities=37% Similarity=0.802 Sum_probs=30.5
Q ss_pred CCCCCCcccCCCcccCC-CCC-CCCcccC-CCcCcccC
Q 006278 411 ACGKQCPCLLNGTCCEK-YCG-CPKSCKN-RFRGCHCA 445 (652)
Q Consensus 411 ~C~~~C~C~~~g~~Ce~-~C~-C~~~C~n-Rf~GC~C~ 445 (652)
.|+.+|.|.+.+++|.. .|. |+..|.| ||+-+.++
T Consensus 83 ~cg~~CiNr~t~iECs~~~C~~cg~~C~NQRFQkkqyA 120 (729)
T KOG4442|consen 83 ACGEDCINRMTSIECSDRECPRCGVYCKNQRFQKKQYA 120 (729)
T ss_pred ccCccccchhhhcccCCccCCCccccccchhhhhhccC
Confidence 56789999999999998 999 9999999 79866664
No 27
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=69.14 E-value=10 Score=30.28 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=31.2
Q ss_pred CchhhhHHHHHHHHhhCCccHHHHHhhhCCCccHHHHHHHHH
Q 006278 284 WKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMT 325 (652)
Q Consensus 284 W~~~E~~L~~k~~~ifg~n~C~iA~~Ll~g~KtC~eV~~ym~ 325 (652)
||..|..++..++..||.+.-.||..| |.+|=.+|.....
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l--~~Rt~~~~~~r~~ 40 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHL--GNRTPKQCRNRWR 40 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHS--TTS-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHH--CcCCHHHHHHHHH
Confidence 999999999999999999999999987 6677667765444
No 28
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=66.22 E-value=3.5 Score=36.68 Aligned_cols=39 Identities=26% Similarity=0.731 Sum_probs=15.5
Q ss_pred cCcccCCCCc-cCCCCcccccccc------------CCcccCcCcccccCCCC
Q 006278 440 RGCHCAKSQC-RSRQCPCFAADRE------------CDPDVCRNCWISCGDGS 479 (652)
Q Consensus 440 ~GC~C~~~~C-~t~~CpC~~~~rE------------CdPd~C~~C~~~Cg~~~ 479 (652)
.||.| .+.| ....|.|.....+ -.+..=.+|+..|+++.
T Consensus 47 ~~C~C-~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~ 98 (103)
T PF05033_consen 47 QGCDC-SGDCSNPSNCECLQRNGGIFAYDSNGRLRIPDKPPIFECNDNCGCSP 98 (103)
T ss_dssp S-----SSSSTCTTTSHHHCCTSSS-SB-TTSSBSSSSTSEEE---TTSSS-T
T ss_pred ccCcc-CCCCCCCCCCcCccccCccccccCCCcCccCCCCeEEeCCCCCCCCC
Confidence 35555 2335 4455666544432 23334457888887753
No 29
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=60.52 E-value=21 Score=29.29 Aligned_cols=45 Identities=16% Similarity=0.027 Sum_probs=36.0
Q ss_pred CCCchhhhHHHHHHHHhhCC-cc---HHHHHhhhCCCc-cHHHHHHHHHhc
Q 006278 282 KSWKTIEKGLFDKGVEIFGR-NS---CLIARNLLNGLK-TCWEVFQYMTCS 327 (652)
Q Consensus 282 ~~W~~~E~~L~~k~~~ifg~-n~---C~iA~~Ll~g~K-tC~eV~~ym~~~ 327 (652)
..||+.|-.+|+.+++.||. +. =.|+.++. ..+ |-.+|-.+++..
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~-~~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELMV-VDGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcC-CCCCCHHHHHHHHHHH
Confidence 46999999999999999998 65 67776653 355 888998888753
No 30
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=57.66 E-value=7.9 Score=42.58 Aligned_cols=42 Identities=33% Similarity=0.903 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCCCCCCC----CcccCC-C---------------------cccCCCCCCCCcccCCCc
Q 006278 399 PCRQYNPCGCQTACGKQ----CPCLLN-G---------------------TCCEKYCGCPKSCKNRFR 440 (652)
Q Consensus 399 ~~~~~~pC~c~~~C~~~----C~C~~~-g---------------------~~Ce~~C~C~~~C~nRf~ 440 (652)
.+..-..|.|...|... |.|... + ..|...|+|+.+|.||+.
T Consensus 103 ~~~~~~~c~C~~~~~~~~~~~C~C~~~n~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~ 170 (364)
T KOG1082|consen 103 DCENSTGCRCCSSCSSVLPLTCLCERHNGGLVAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVV 170 (364)
T ss_pred cCccccCCCccCCCCCCCCccccChHhhCCccccccCCccccccccCccccccccCCCCCCcCcchhh
Confidence 44566778887666532 788761 1 189999999999999986
No 31
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=51.79 E-value=6.9 Score=27.54 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=13.0
Q ss_pred CCCcccCCCCCCCCC
Q 006278 623 RAPAWARKPEASGSK 637 (652)
Q Consensus 623 ~~pC~Cgsp~CrG~k 637 (652)
..+|+||++.|+|..
T Consensus 2 ~~~C~CGs~~CRG~l 16 (26)
T smart00508 2 KQPCLCGAPNCRGFL 16 (26)
T ss_pred CeeeeCCCcccccee
Confidence 358999999999975
No 32
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=46.95 E-value=24 Score=42.19 Aligned_cols=42 Identities=21% Similarity=0.576 Sum_probs=34.4
Q ss_pred ccCCCCCchhhhHHHHHHHHhhCCccHHHHHhhhCCCcc---HHHHH
Q 006278 278 LSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKT---CWEVF 321 (652)
Q Consensus 278 ~~~~~~W~~~E~~L~~k~~~ifg~n~C~iA~~Ll~g~Kt---C~eV~ 321 (652)
+++..-||++|+-||.+++..+-++|-+|+..| -.|| |.|.|
T Consensus 616 Y~gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~--~~KtVaqCVeyY 660 (907)
T KOG4167|consen 616 YAGSDKWTPLERKLFNKALYTYSKDFIFVQKMV--KSKTVAQCVEYY 660 (907)
T ss_pred ecCcccccHHHHHHHHHHHHHhcccHHHHHHHh--ccccHHHHHHHH
Confidence 455677999999999999999999999999877 4566 55544
No 33
>PF14100 PmoA: Methane oxygenase PmoA
Probab=41.29 E-value=36 Score=36.02 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCccEEEeccccCCCceEEEecceecCHHHHhhhhccccccCC--cccccCCccEEEeccccCCccccccC
Q 006278 503 QRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENS--SFLFNLNDQFVLDAYRKGDKLKFANH 580 (652)
Q Consensus 503 k~v~V~~S~~kG~GLfA~edI~kGefI~EY~GEiIs~~Ea~~R~~~yd~~~~--sYlf~l~~~~vIDA~~~GN~aRFINH 580 (652)
..|.|....-.|+++++.+.+..|+++. .+-............. .|-..+++. ..... .-|++|
T Consensus 143 ~~v~l~~~~yGGl~~R~~~~~~~g~v~~--------s~G~~g~~~~~g~~a~Wv~~~g~~~~~-----~~~~~-i~~~dh 208 (271)
T PF14100_consen 143 DPVTLGDPGYGGLFWRAARSWDGGTVLT--------SEGKTGEEAAWGKRAPWVDYSGPIDGE-----DGTSG-IAILDH 208 (271)
T ss_pred cceEecCCCcceEEEEccCcccCCeEEC--------CCCCcCcccccCCccCceEEEeeeCCC-----cceEE-EEEEeC
Confidence 3677776655789999998885555543 2111110001111100 111111111 00111 247899
Q ss_pred CCCCCcceEEEEEcCeeEEEE------EEccCCCCCCeEEEecCC
Q 006278 581 SPDPNCYAKVIMVAGDHRVGI------FAKERISAGEELFYDYRY 619 (652)
Q Consensus 581 SC~PNc~~~~v~v~G~~rI~~------fA~RDI~aGEELTfDYg~ 619 (652)
--+||- ...|.+.+...+++ ..--.|++||.|++.|+.
T Consensus 209 P~N~~~-P~~W~vR~~g~~~~~p~~~~~~~~~l~~G~~l~~rYr~ 252 (271)
T PF14100_consen 209 PSNPNY-PTPWHVRGYGLFGANPAPAFDGPLTLPPGETLTLRYRV 252 (271)
T ss_pred CCCCCC-CcceEEeccCcceecccccccCceecCCCCeEEEEEEE
Confidence 988874 46788876554444 344679999999999973
No 34
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=40.00 E-value=17 Score=29.11 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=11.4
Q ss_pred EEEEccCCCCCCeEE
Q 006278 600 GIFAKERISAGEELF 614 (652)
Q Consensus 600 ~~fA~RDI~aGEELT 614 (652)
.++|.|||++|+.|+
T Consensus 3 vvVA~~di~~G~~i~ 17 (63)
T PF08666_consen 3 VVVAARDIPAGTVIT 17 (63)
T ss_dssp EEEESSTB-TT-BEC
T ss_pred EEEEeCccCCCCEEc
Confidence 478999999999995
No 35
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=38.66 E-value=18 Score=32.68 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=12.9
Q ss_pred EEEEEccCCCCCCeEEE
Q 006278 599 VGIFAKERISAGEELFY 615 (652)
Q Consensus 599 I~~fA~RDI~aGEELTf 615 (652)
.||||+|||++||-|.+
T Consensus 2 rGl~At~dI~~Ge~I~~ 18 (162)
T PF00856_consen 2 RGLFATRDIKAGEVILI 18 (162)
T ss_dssp EEEEESS-B-TTEEEEE
T ss_pred EEEEECccCCCCCEEEE
Confidence 47999999999998874
No 36
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=31.99 E-value=41 Score=38.46 Aligned_cols=44 Identities=27% Similarity=0.552 Sum_probs=35.7
Q ss_pred CCCCCchhhhHHHHHHHHhhCCccHHHHHhhhCCCccHHH-HHHHHH
Q 006278 280 DEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWE-VFQYMT 325 (652)
Q Consensus 280 ~~~~W~~~E~~L~~k~~~ifg~n~C~iA~~Ll~g~KtC~e-V~~ym~ 325 (652)
.+.+|+.-|.-|++.++++||..-=-||+.+ |+||=-| ++.|++
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HV--gtKt~EqCIl~FL~ 322 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHV--GTKTKEQCILHFLQ 322 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHh--CCCCHHHHHHHHHc
Confidence 5678999999999999999999999999987 7887333 234443
No 37
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=25.46 E-value=1.1e+02 Score=34.35 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=36.4
Q ss_pred CCCCchhhhHHHHHHHHhhCCccHHHHHhhhCCCccHHHHH-HHHHhc
Q 006278 281 EKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVF-QYMTCS 327 (652)
Q Consensus 281 ~~~W~~~E~~L~~k~~~ifg~n~C~iA~~Ll~g~KtC~eV~-~ym~~~ 327 (652)
.-.|+..|..+|=|++.|+|..|=||+.+. ..+.=.+|- .|+.+.
T Consensus 365 ~~~Ws~~e~ekFYKALs~wGtdF~LIs~lf--P~R~RkqIKaKfi~Ee 410 (507)
T COG5118 365 ALRWSKKEIEKFYKALSIWGTDFSLISSLF--PNRERKQIKAKFIKEE 410 (507)
T ss_pred CCcccHHHHHHHHHHHHHhcchHHHHHHhc--CchhHHHHHHHHHHHh
Confidence 456999999999999999999999999754 567777885 455543
No 38
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=25.37 E-value=20 Score=40.94 Aligned_cols=100 Identities=10% Similarity=-0.089 Sum_probs=66.3
Q ss_pred CccE---EEeccccCCCceEEEecceecCHHH--Hhhhhcc-ccc--cCCcccccCCccEEEeccccCCccccccCCCCC
Q 006278 513 SGWG---AFLKNSVGKHEYLGEYTGELISHRE--ADKRGKI-YDR--ENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDP 584 (652)
Q Consensus 513 kG~G---LfA~edI~kGefI~EY~GEiIs~~E--a~~R~~~-yd~--~~~sYlf~l~~~~vIDA~~~GN~aRFINHSC~P 584 (652)
.+|+ ..|...+..|++|..++|+..-..- ...+..- ... ....|....-.....++...|+..++++|++.|
T Consensus 123 c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~l~~~~~~ 202 (463)
T KOG1081|consen 123 CSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVCHDPLLPKGMKHDHVNFFGCYAWTHEKRVFPYEGQSSKLIPHSKKP 202 (463)
T ss_pred cccCCcceeeeccccceeEEeEEcCcccccccceecCcccchhhccccceeccchhhHHHhhhhhccchHHHhhhhcccc
Confidence 4555 7777799999999999999866551 1111100 000 011111100111233444499999999999999
Q ss_pred CcceEEEEEcCeeEEEEEEccCCCCCCe
Q 006278 585 NCYAKVIMVAGDHRVGIFAKERISAGEE 612 (652)
Q Consensus 585 Nc~~~~v~v~G~~rI~~fA~RDI~aGEE 612 (652)
+-....+...+..|+..++.+.++-+.-
T Consensus 203 ~s~~~~~~~~~~~r~~~~~~q~~~~~~~ 230 (463)
T KOG1081|consen 203 ASTMSEKIKEAKARFGKLKAQWEAGIKQ 230 (463)
T ss_pred chhhhhhhhcccchhhhcccchhhccch
Confidence 9888888888899999999988888876
No 39
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=23.01 E-value=67 Score=27.69 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=16.4
Q ss_pred eeEEEEEEccCCCCCCeEEEec
Q 006278 596 DHRVGIFAKERISAGEELFYDY 617 (652)
Q Consensus 596 ~~rI~~fA~RDI~aGEELTfDY 617 (652)
..-.++||.++|++||-| +.|
T Consensus 9 ~~G~gl~a~~~i~~g~~i-~~~ 29 (116)
T smart00317 9 GKGWGVRATEDIPKGEFI-GEY 29 (116)
T ss_pred CCcEEEEECCccCCCCEE-EEE
Confidence 345899999999999944 444
No 40
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=22.33 E-value=94 Score=27.51 Aligned_cols=23 Identities=22% Similarity=0.687 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCCCCCC--CcccCC
Q 006278 399 PCRQYNPCGCQTACGKQ--CPCLLN 421 (652)
Q Consensus 399 ~~~~~~pC~c~~~C~~~--C~C~~~ 421 (652)
+-.....|+|.+.|... |.|+..
T Consensus 45 ~~~~~~gC~C~~~C~~~~~C~C~~~ 69 (98)
T smart00468 45 SPSPLVGCSCSGDCSSSNKCECARK 69 (98)
T ss_pred CCCCCCCCcCCCCCCCCCcCCcHhh
Confidence 34567789999889843 988764
Done!