Query 006279
Match_columns 652
No_of_seqs 386 out of 1183
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 20:58:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03191 Type I inositol-1,4,5 100.0 1E-157 2E-162 1296.9 45.8 609 1-633 1-621 (621)
2 KOG0566 Inositol-1,4,5-triphos 100.0 3.3E-90 7.2E-95 776.7 25.4 323 78-618 514-843 (1080)
3 smart00128 IPPc Inositol polyp 100.0 6.1E-76 1.3E-80 616.5 27.7 225 377-612 80-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 1.2E-64 2.5E-69 539.2 19.2 322 78-616 7-336 (460)
5 PTZ00312 inositol-1,4,5-tripho 100.0 7.9E-30 1.7E-34 261.8 10.4 175 420-604 65-356 (356)
6 KOG0565 Inositol polyphosphate 100.0 1E-28 2.2E-33 232.4 12.4 142 378-520 2-145 (145)
7 KOG1976 Inositol polyphosphate 99.7 1.3E-17 2.8E-22 172.4 6.8 166 420-606 154-388 (391)
8 TIGR03395 sphingomy sphingomye 98.5 1.9E-06 4.1E-11 90.5 14.0 70 418-496 116-189 (283)
9 PRK05421 hypothetical protein; 98.4 4.4E-06 9.6E-11 86.3 13.2 127 423-607 135-262 (263)
10 PF03372 Exo_endo_phos: Endonu 98.2 6.4E-07 1.4E-11 85.9 2.8 97 388-500 72-172 (249)
11 COG3568 ElsH Metal-dependent h 97.7 0.00027 5.8E-09 73.9 10.9 55 423-494 119-174 (259)
12 PRK11756 exonuclease III; Prov 97.5 0.0014 3E-08 67.4 12.8 65 422-496 88-155 (268)
13 TIGR00633 xth exodeoxyribonucl 97.3 0.0035 7.5E-08 63.1 12.7 35 107-145 1-36 (255)
14 PTZ00297 pantothenate kinase; 97.1 0.0036 7.8E-08 78.9 12.3 69 421-495 131-206 (1452)
15 smart00476 DNaseIc deoxyribonu 96.2 0.031 6.8E-07 59.1 10.2 104 376-496 77-188 (276)
16 PLN03144 Carbon catabolite rep 96.1 0.021 4.6E-07 66.3 9.5 63 436-512 418-480 (606)
17 PRK13911 exodeoxyribonuclease 95.9 0.052 1.1E-06 56.4 10.1 35 108-145 2-36 (250)
18 COG3021 Uncharacterized protei 95.8 0.045 9.8E-07 58.7 9.6 132 421-606 173-307 (309)
19 TIGR00195 exoDNase_III exodeox 95.5 0.072 1.6E-06 54.3 9.2 34 108-145 2-35 (254)
20 KOG3873 Sphingomyelinase famil 95.1 0.11 2.4E-06 56.9 9.6 199 382-608 73-294 (422)
21 PF14529 Exo_endo_phos_2: Endo 94.2 0.059 1.3E-06 47.7 4.1 33 569-601 86-119 (119)
22 PRK15251 cytolethal distending 93.0 0.43 9.4E-06 50.6 8.9 56 421-495 140-195 (271)
23 PRK13911 exodeoxyribonuclease 93.0 0.039 8.5E-07 57.3 1.0 55 425-495 89-147 (250)
24 KOG2756 Predicted Mg2+-depende 91.1 0.68 1.5E-05 49.3 7.4 62 426-497 195-256 (349)
25 COG0708 XthA Exonuclease III [ 88.4 0.078 1.7E-06 55.8 -1.8 34 108-145 2-35 (261)
26 KOG2338 Transcriptional effect 79.5 2.8 6E-05 47.8 5.2 93 393-495 205-303 (495)
27 PRK11756 exonuclease III; Prov 78.9 0.5 1.1E-05 48.7 -0.7 34 108-145 2-35 (268)
28 TIGR00633 xth exodeoxyribonucl 71.2 1.5 3.3E-05 44.1 0.4 53 435-497 100-154 (255)
29 TIGR00195 exoDNase_III exodeox 68.2 1.7 3.6E-05 44.4 0.0 53 436-498 98-152 (254)
30 PRK15251 cytolethal distending 62.2 6.1 0.00013 42.2 2.8 40 107-151 25-71 (271)
31 PRK05421 hypothetical protein; 52.2 7.7 0.00017 40.3 1.6 36 106-145 43-78 (263)
32 TIGR02616 tnaC_leader tryptoph 27.3 14 0.0003 26.2 -0.8 16 17-32 6-21 (26)
33 PF08053 Tna_leader: Tryptopha 26.8 13 0.00028 25.2 -1.0 14 17-30 8-21 (24)
34 PRK09806 tryptophanase leader 23.2 16 0.00034 25.2 -1.1 15 17-31 8-22 (26)
35 KOG3870 Uncharacterized conser 23.0 33 0.00072 38.6 0.6 51 482-550 350-400 (434)
No 1
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=1e-157 Score=1296.93 Aligned_cols=609 Identities=76% Similarity=1.200 Sum_probs=558.4
Q ss_pred CCCccCCcccccChHHHHHhhhccCCCCccccCCccCCCCCcccccccccccccccccccccccccccCcccccccCCC-
Q 006279 1 MRTQRGKRSEAFWPSIVMKKWLNIKPKVYDFSEDEIDTETESEDDACSVKDARVHIREDHLHKAQENHSDCQSQISETP- 79 (652)
Q Consensus 1 m~~~~~k~~~~~W~~~v~~Kwlni~~~~~df~aD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (652)
||++++|++|+||||+||||||||++|++||||||.|+++++|+++|+.++.+..++++++.+.++++..++.++++.|
T Consensus 1 m~~~~~k~~~~~w~~~v~rkwlni~~k~~df~ad~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (621)
T PLN03191 1 MRTRRGKRPEAFWPSIVMKKWLNIKPKVYDFSEDEYDTETESEDDACSVKDVRVNVDEDHANRRQGNQSVFGNQISDGGV 80 (621)
T ss_pred CCccccCccccccHHHHHHHHhCcCCcccccCcccccCCCccccchhhhhcccccccccccccccccccccccccccCcc
Confidence 9999999999999999999999999999999999999988899999999999999999999999999999888877655
Q ss_pred --CchhhHhhhcccccccccccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeeeeeCCCCCccccC
Q 006279 80 --SKGYHLRHRRGKSETLRVQYINTKDVRVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEVVPLNAGNVLGAE 157 (652)
Q Consensus 80 --~~~~~~~~~r~~~e~~r~ey~~~~~~ri~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEiV~Lna~nvl~~e 157 (652)
++.|..++|||++||+|+|||+++++|||||||||||+.|+.+++|.+||.+++|+|||||||||||||||||||+++
T Consensus 81 ~~~~~~~~~~rr~~~e~~ra~y~~~~~~rv~v~TWNV~g~~p~~~l~l~~wl~~~~p~DiyviG~QE~v~lna~nv~~~~ 160 (621)
T PLN03191 81 SVSKGYSSKHRRGKSETLRAQYINTKDIRVTIGTWNVAGRLPSEDLEIEDWLSTEEPADIYIIGFQEVVPLNAGNVLGAE 160 (621)
T ss_pred ccccccchhhhccchhhhHHHhccccceEEEEEEeecCCCCCcccCCHHHhccCCCCCCEEEEeeEEeccCcHhhhhccc
Confidence 678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhcCCCCCcccccccCCCCCCCcCCCchhhhhhhhhhcccCCCccCcccccccccccCCCCCcccc
Q 006279 158 SSRPIPKWEAIIRRTLNKSAEPENKYKSYSAPPSPVLRTSSVADELADELADEIDDLPLGITSEEYASITNGCNVGREDL 237 (652)
Q Consensus 158 d~~~~~~W~~~I~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
++.|+++|+.+|+++||+..++.++|+|||+||||++ .+|+ ++|||+.|+|+.....++.+.-.....+
T Consensus 161 ~~~~~~~W~~~i~~tl~~~~~~~~~~k~~S~ppsp~~-~~~~---~~~e~~~~~d~~~~~~~~~~~~~~~~~~------- 229 (621)
T PLN03191 161 DSRPIPKWEAIIRRTLNKSNKPESKHKSYSAPPSPVL-RTSI---VADELAEEVDSLPLEMMNNEFIDAATGC------- 229 (621)
T ss_pred cCCchhhHHHHHHHHHhccCCCCCccccCCCCCCccc-CCcc---hhhhhhhhcccChhhhcccccccccccc-------
Confidence 9999999999999999999999999999999999999 4444 6788999988855533332210000000
Q ss_pred hhhhccccccccccccccccCCCCCCCCCCCCCCchhhhhhhhhhhhccccccccccccCCCCCCCcccccccCCCcccc
Q 006279 238 KKVISIGKNLHLSRIYGVDYDRRLDWPEHSFDATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAINGNGLKRS 317 (652)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~ 317 (652)
-....+.+.+++|++.+++..++.+.+|++|+|+||+|+||||+|||+|++|++|+++.++.+++++
T Consensus 230 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~~r~~~~~~e~p~~~~~~~~~~~~~~~~~~ 296 (621)
T PLN03191 230 -------------PSLEPERNKNIGWPEHSLDATPQVVSSNSKLRRVFSSSARLGFKWPENPSLFSPQRFALNARGLKRS 296 (621)
T ss_pred -------------cccchhhccccCCcccccccCcccccccccceeeeccccccccCCCCCccccCchhhcccccccchh
Confidence 0122456667789998888888888899999999999999999999999999999999999999999
Q ss_pred cccccccccchhhccCCc------ccccccccCCCCCCcccccccCCCcccccchHHHHhhcCCCCCEEEEEeeeceeEE
Q 006279 318 HHSYGNLVSTWMEQQEEP------EVVESVSDVSDGFSDEEFDAFSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGIY 391 (652)
Q Consensus 318 ~~s~~~~~s~~~~~~~~~------~~~~s~~~~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~Yv~v~S~qMvGi~ 391 (652)
++||+++++.|.++++.. ....|.+...+.+++++++.+++++..|.++..+........+|++|.|+|||||+
T Consensus 297 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YvkV~S~qLvGl~ 376 (621)
T PLN03191 297 HRSFGNLGLSWNEIKQRSEVPEVPEVIDSLSDVSDRSSEAEDDTFKEVPSYQLPEDLIKDCRKVKQKYVRIVSKQMVGIY 376 (621)
T ss_pred hhccccccccccchhhcccccccccccccccccccccCCCcccccccCChhhhhhHHHHhhccCCCCEEEEEEEeeeeEE
Confidence 999999999999766543 33445555666677888889999999888888887888899999999999999999
Q ss_pred EEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCC
Q 006279 392 VSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSS 471 (652)
Q Consensus 392 L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~ 471 (652)
|+||||++++++|++|++++|+||+||++||||||+|+|.|++|+|||||||||||++++++++||+|+.+|++++.|..
T Consensus 377 L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~ 456 (621)
T PLN03191 377 VSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSS 456 (621)
T ss_pred EEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEeccccccccchHHHHHHHHHHHHhccccCc
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999987
Q ss_pred CCCCCCCCCCCCcceEEEeCccCcccccChHHHHHHHhhcchHHHhhhhhhhHHHhcCCccccccccCcCCCCCcccccC
Q 006279 472 VFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEIN 551 (652)
Q Consensus 472 ~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~ 551 (652)
..+...|..|.+||+|||||||||||++++++++++|.+++|+.||++|||++|+++|++|.||+||+|+|||||||+.|
T Consensus 457 ~~~~~~~~~I~dhD~vFWlGDLNYRIdl~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~GF~Eg~I~FpPTYKYd~g 536 (621)
T PLN03191 457 VLDTDQPQTIPSHDQIFWFGDLNYRLNMLDTEVRKLVAQKRWDELINSDQLIKELRSGHVFDGWKEGPIKFPPTYKYEIN 536 (621)
T ss_pred ccccCCCccccccceEEEecCccccccCCHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccCCcccCCccCCCCcccccC
Confidence 66666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCcccCCCcccceeeecCceeEEEeccCCCCCCCCCCeeeEEEEEEEeeCHHHHhhhccccccc---cc
Q 006279 552 SDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAEILLSDHRPVSSTFLVQVEVLDHRKLKRALNVSSAV---VH 628 (652)
Q Consensus 552 Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g~~i~~l~Y~s~e~~~SDHrPV~A~F~v~v~vi~~~kl~~~l~~~~~~---v~ 628 (652)
++.|+++++++++|+|+|||||||||++++++++.|.+.++++||||||+|.|.++|++++++|+|+++++++|+ ||
T Consensus 537 Sd~Ydg~~~~Ts~KkR~PSWCDRILykg~~i~~l~Y~s~ei~~SDHRPV~A~F~v~V~~id~~k~q~~~~~~~a~~~~~~ 616 (621)
T PLN03191 537 SDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLCYKRSEIRLSDHRPVSSMFLVEVEVFDHRKLQRALNVNSAAASAVH 616 (621)
T ss_pred CccccccccccccCccccchhheEeecCCCceEeEeccCCcccCCchhcceEEEEEEEecCHHHHHhhhhcchhhhhccC
Confidence 999998888899999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCccc
Q 006279 629 PDIFL 633 (652)
Q Consensus 629 ~~~~~ 633 (652)
||..+
T Consensus 617 ~~~~~ 621 (621)
T PLN03191 617 PEPSF 621 (621)
T ss_pred CccCC
Confidence 99764
No 2
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-90 Score=776.75 Aligned_cols=323 Identities=42% Similarity=0.775 Sum_probs=300.1
Q ss_pred CCCchhhH-hhhcccccccccccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCC------CCCCEEEEeeeeeeeCCC
Q 006279 78 TPSKGYHL-RHRRGKSETLRVQYINTKDVRVTIGTWNVAGRQPYEDLDIDDWLCTQ------EPADIYIFGFQEVVPLNA 150 (652)
Q Consensus 78 ~~~~~~~~-~~~r~~~e~~r~ey~~~~~~ri~vgTwNV~G~~p~~~ldl~~WL~~~------~~~DIYvlGfQEiV~Lna 150 (652)
+|++.|+. +|+.|.+ +|+..++||||||||||||+.+....||++||++. .++|||||||||||+|||
T Consensus 514 dpv~~yv~~~L~er~~-----eyt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLna 588 (1080)
T KOG0566|consen 514 DPVHEYVLKELRERRS-----EYTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNA 588 (1080)
T ss_pred CchhHHHHHHHHHhhh-----hhccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcCc
Confidence 78888887 6777755 59999999999999999997766667899999974 379999999999999999
Q ss_pred CCccccCCCCChhHHHHHHHHHhcCCCCCcccccccCCCCCCCcCCCchhhhhhhhhhcccCCCccCcccccccccccCC
Q 006279 151 GNVLGAESSRPIPKWEAIIRRTLNKSAEPENKYKSYSAPPSPVLRTSSVADELADELADEIDDLPLGITSEEYASITNGC 230 (652)
Q Consensus 151 ~nvl~~ed~~~~~~W~~~I~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~ 230 (652)
|||+.++.. ....|++.|+++||+.
T Consensus 589 g~iv~As~t-k~~~Wee~i~~~Ln~~------------------------------------------------------ 613 (1080)
T KOG0566|consen 589 GNIVSASTT-KRRFWEEKILKTLNRY------------------------------------------------------ 613 (1080)
T ss_pred cceeccChH-HHHHHHHHHHHHhcCC------------------------------------------------------
Confidence 999988655 5899999999998742
Q ss_pred CCCcccchhhhccccccccccccccccCCCCCCCCCCCCCCchhhhhhhhhhhhccccccccccccCCCCCCCccccccc
Q 006279 231 NVGREDLKKVISIGKNLHLSRIYGVDYDRRLDWPEHSFDATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAIN 310 (652)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~~~p~~~~~~~~~~~ 310 (652)
T Consensus 614 -------------------------------------------------------------------------------- 613 (1080)
T KOG0566|consen 614 -------------------------------------------------------------------------------- 613 (1080)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccccchhhccCCcccccccccCCCCCCcccccccCCCcccccchHHHHhhcCCCCCEEEEEeeeceeE
Q 006279 311 GNGLKRSHHSYGNLVSTWMEQQEEPEVVESVSDVSDGFSDEEFDAFSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGI 390 (652)
Q Consensus 311 ~~~~~~~~~s~~~~~s~~~~~~~~~~~~~s~~~~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~Yv~v~S~qMvGi 390 (652)
..+|+++.|.||||+
T Consensus 614 -----------------------------------------------------------------~~kYvlL~s~QlvGv 628 (1080)
T KOG0566|consen 614 -----------------------------------------------------------------KNKYVLLRSEQLVGV 628 (1080)
T ss_pred -----------------------------------------------------------------CCceEEEehhhhhee
Confidence 025999999999999
Q ss_pred EEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccC
Q 006279 391 YVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFS 470 (652)
Q Consensus 391 ~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~ 470 (652)
+|.+|+|.+..++|++|..++++||++|..||||||+|||.++.|+|||||+|||||+.+ ..+||.||.+|.++++|+
T Consensus 629 ~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~sn--v~ERn~DY~tI~r~l~Fp 706 (1080)
T KOG0566|consen 629 CLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSN--VEERNEDYKTIARKLRFP 706 (1080)
T ss_pred eEEEEEcccccchhhhcccceeecccccccCCCceEEEEEEeccccEEEEecccccccch--HhhhhhhHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999999975 678999999999999997
Q ss_pred CCCCCCCCCCCCCcceEEEeCccCcccccChHHHHHHHhhcchHHHhhhhhhhHHHhcCCccccccccCcCCCCCccccc
Q 006279 471 SVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEI 550 (652)
Q Consensus 471 ~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~ 550 (652)
. ...|.+||+|||+|||||||++++++|+.+|.+++|+.|+++|||++||.+|.+|.||.|++|+|+||||||.
T Consensus 707 ~------Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKyD~ 780 (1080)
T KOG0566|consen 707 R------GRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKYDP 780 (1080)
T ss_pred C------CccccCCceEEEecccceeecCCHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCcccccC
Confidence 4 4579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCcccCCCcccceeeecCceeEEEeccCCCCCCCCCCeeeEEEEEEEeeCHHHHhh
Q 006279 551 NSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAEILLSDHRPVSSTFLVQVEVLDHRKLKR 618 (652)
Q Consensus 551 ~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g~~i~~l~Y~s~e~~~SDHrPV~A~F~v~v~vi~~~kl~~ 618 (652)
+|+.||+ ++|+|+|||||||||++..+.++.|.+.++++||||||+|+|.++|..+|.+|..+
T Consensus 781 gTd~YDT-----SeK~R~PAWTDRIL~r~e~~~~l~Y~~~el~~SDHRPV~A~~~a~i~~Vd~~kk~~ 843 (1080)
T KOG0566|consen 781 GTDDYDT-----SEKCRTPAWTDRILWRGEKLELLSYKRAELKTSDHRPVYAIFRAEIFEVDEQKKLR 843 (1080)
T ss_pred CCCcccc-----chhccCccchhhheeccccccccccccccccccCCCceEEEEEEEEEEEcHHHHHH
Confidence 9999985 89999999999999999999999999999999999999999999999999877554
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=6.1e-76 Score=616.52 Aligned_cols=225 Identities=40% Similarity=0.738 Sum_probs=206.7
Q ss_pred CCEEEEEeeeceeEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCeEEEEecccCCCCCCChhHHHH
Q 006279 377 PKYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRR 456 (652)
Q Consensus 377 ~~Yv~v~S~qMvGi~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rR 456 (652)
..|+++.+.+|+||+|+||+|.++.++|+++.+++|++|++|.+||||||+|+|.+.+++||||||||+||+.+ .++|
T Consensus 80 ~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~--~~~R 157 (310)
T smart00128 80 GQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN--VEQR 157 (310)
T ss_pred CceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccch--hhhh
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999864 7899
Q ss_pred HhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcccccCh-HHHHHHHhhcchHHHhhhhhhhHHHhcCCccccc
Q 006279 457 NSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMD-TEVRELVAQKRWDKLINSDQLSKELHSGHVFEGW 535 (652)
Q Consensus 457 N~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~-~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf 535 (652)
|+|+.+|++.+.|+... ...+.+||+|||||||||||++.+ ++++++|+.++|..|+++|||+.+++++.+|.||
T Consensus 158 ~~~~~~I~~~~~f~~~~----~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f 233 (310)
T smart00128 158 NQDYKTILRALSFPERA----ELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKEFDDLLEKDQLNRQKEAGKVFKGF 233 (310)
T ss_pred HHHHHHHHHhcCCCCCc----cccccccceEEEecCcceeecCCCHHHHHHHHhhCcHHHHhhhhhHHHHhhcccccCcC
Confidence 99999999999886421 112678999999999999999988 8999999999999999999999999999999999
Q ss_pred cccCcCCCCCcccc-cCCccCCCCCCCCCCcccCCCcccceeeec--CceeEEE-ecc-CCCCCCCCCCeeeEEEEEEEe
Q 006279 536 KEGVINFPPTYKYE-INSDRYVGENPKEGEKKRSPAWCDRILWLG--KGIKQLA-YTR-AEILLSDHRPVSSTFLVQVEV 610 (652)
Q Consensus 536 ~Eg~I~FpPTYKy~-~~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g--~~i~~l~-Y~s-~e~~~SDHrPV~A~F~v~v~v 610 (652)
.|++|+|||||||+ .|++.|++ ++|+|+|||||||||+. .++.++. |.+ .++.+||||||+|.|.|.+..
T Consensus 234 ~E~~I~F~PTYK~~~~~t~~Yd~-----~~k~R~PsWcDRIL~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~~~f~v~~~~ 308 (310)
T smart00128 234 QEGPITFPPTYKYDSVGTETYDT-----SEKKRVPAWCDRILYRSNGPNLIQLSEYHSGMELTTSDHKPVFATFRLKVTA 308 (310)
T ss_pred ccCCcCCCCCeeecCCCCccccC-----cccccCcchhheehhhccCCCceecccccCCCccCCcCcccccEEEEEEEEe
Confidence 99999999999999 99999985 67899999999999994 4566665 877 589999999999999999987
Q ss_pred eC
Q 006279 611 LD 612 (652)
Q Consensus 611 i~ 612 (652)
++
T Consensus 309 ~~ 310 (310)
T smart00128 309 VD 310 (310)
T ss_pred cC
Confidence 64
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-64 Score=539.21 Aligned_cols=322 Identities=36% Similarity=0.626 Sum_probs=286.1
Q ss_pred CCCchhhH-hhhcccccccccccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCC----CCCCEEEEeeeeeeeCCCCC
Q 006279 78 TPSKGYHL-RHRRGKSETLRVQYINTKDVRVTIGTWNVAGRQPYEDLDIDDWLCTQ----EPADIYIFGFQEVVPLNAGN 152 (652)
Q Consensus 78 ~~~~~~~~-~~~r~~~e~~r~ey~~~~~~ri~vgTwNV~G~~p~~~ldl~~WL~~~----~~~DIYvlGfQEiV~Lna~n 152 (652)
+|++.|+. .++.+++ +|+-.+.+.||++|+|++|..| ..++..||++. ..+|+||+||||+|+|++|.
T Consensus 7 ~p~~~y~~~~l~~~~s-----k~~~~~~~~~f~~~~n~~~~~~--k~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~s 79 (460)
T COG5411 7 DPRHPYIVAVLRQRRS-----KYVIEKDVSIFVSTFNPPGKPP--KASTKRWLFPEIEATELADLYVVGLQEVVELTPGS 79 (460)
T ss_pred CCCchhHHHHHHHHhh-----hheeecceeeEeccccCCCCCc--hhhhhhhcccccccccccceEEeccceeeeccchh
Confidence 67888887 5666655 5999999999999999999766 44589999982 45899999999999999999
Q ss_pred ccccCCCCChhHHHHHHHHHhcCCCCCcccccccCCCCCCCcCCCchhhhhhhhhhcccCCCccCcccccccccccCCCC
Q 006279 153 VLGAESSRPIPKWEAIIRRTLNKSAEPENKYKSYSAPPSPVLRTSSVADELADELADEIDDLPLGITSEEYASITNGCNV 232 (652)
Q Consensus 153 vl~~ed~~~~~~W~~~I~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~ 232 (652)
|+++........|++.+-..||. .
T Consensus 80 ils~~p~~rl~~wes~~~~~Ln~-~------------------------------------------------------- 103 (460)
T COG5411 80 ILSADPYDRLRIWESKVLDCLNG-A------------------------------------------------------- 103 (460)
T ss_pred hccCCcccccchhHHHHHHHhcc-c-------------------------------------------------------
Confidence 99775333346677766555553 1
Q ss_pred CcccchhhhccccccccccccccccCCCCCCCCCCCCCCchhhhhhhhhhhhccccccccccccCCCCCCCcccccccCC
Q 006279 233 GREDLKKVISIGKNLHLSRIYGVDYDRRLDWPEHSFDATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAINGN 312 (652)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~~~p~~~~~~~~~~~~~ 312 (652)
T Consensus 104 -------------------------------------------------------------------------------- 103 (460)
T COG5411 104 -------------------------------------------------------------------------------- 103 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccccchhhccCCcccccccccCCCCCCcccccccCCCcccccchHHHHhhcCCCCCEEEEEeeeceeEEE
Q 006279 313 GLKRSHHSYGNLVSTWMEQQEEPEVVESVSDVSDGFSDEEFDAFSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGIYV 392 (652)
Q Consensus 313 ~~~~~~~s~~~~~s~~~~~~~~~~~~~s~~~~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~Yv~v~S~qMvGi~L 392 (652)
+...+|.++.+.||.|+++
T Consensus 104 -------------------------------------------------------------~~~eky~~l~s~q~~~~~~ 122 (460)
T COG5411 104 -------------------------------------------------------------QSDEKYSLLRSPQLGGILL 122 (460)
T ss_pred -------------------------------------------------------------ccCCceEEecchhccCcce
Confidence 1124688899999999999
Q ss_pred EEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCC
Q 006279 393 SIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSV 472 (652)
Q Consensus 393 ~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~ 472 (652)
.||.+.+-.+.+.+|..+.-+||++|.-+|||+|+++|+...+.||||+|||+||..+ .++|+.||..|.+.++|..
T Consensus 123 ~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~~~~~t~~cFv~shlaag~~N--~eeR~~Dy~~I~~~i~f~~- 199 (460)
T COG5411 123 RVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAGVNN--IEERIFDYRSIASNICFSR- 199 (460)
T ss_pred EEeeeccccceeccccccccccccceecccccccceeEEeecCCcEEEecchhccccc--HHHHHHHHHHHHHheecCC-
Confidence 9999999999999999999999999999999999999999999999999999999865 6789999999999999963
Q ss_pred CCCCCCCCCCCcceEEEeCccCcccccChHHHHHHHhhcc--hHHHhhhhhhhHHHhcCCccccccccCcCCCCCccccc
Q 006279 473 FDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKR--WDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEI 550 (652)
Q Consensus 473 ~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~~~--~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~ 550 (652)
...|.+||+|||+|||||||++.+++++..+...+ +..|+++|||..|+..|.+|.||+|..|+|||||||+.
T Consensus 200 -----g~~I~~hdti~w~GDlNyRVts~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~ 274 (460)
T COG5411 200 -----GLRIYDHDTIFWLGDLNYRVTSTNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDY 274 (460)
T ss_pred -----CceecccceEEEecccCceeecCchhcchhhhCCcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeec
Confidence 35789999999999999999999999999998877 78899999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCcccCCCcccceeeecCceeEEEeccCC-CCCCCCCCeeeEEEEEEEeeCHHHH
Q 006279 551 NSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAE-ILLSDHRPVSSTFLVQVEVLDHRKL 616 (652)
Q Consensus 551 ~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g~~i~~l~Y~s~e-~~~SDHrPV~A~F~v~v~vi~~~kl 616 (652)
+++.|+. ++|.|+||||||||+++....+++|.+.. +++||||||+|+|.+.+.++|+.+.
T Consensus 275 gt~~ydt-----sdk~RiPsWtDRIl~~s~~~~p~sY~sip~l~~SDHrPV~a~~~~~i~~~d~~~k 336 (460)
T COG5411 275 GTDEYDT-----SDKGRIPSWTDRILYKSEQLTPHSYSSIPHLMISDHRPVYATFRAKIKVVDPSKK 336 (460)
T ss_pred CCccccc-----cccccCCchhhhhhhhccccccccccccCceeecCCCeEEEEEecceEEeCcchh
Confidence 9999985 78899999999999999989999999976 9999999999999999999997653
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.96 E-value=7.9e-30 Score=261.75 Aligned_cols=175 Identities=27% Similarity=0.423 Sum_probs=129.9
Q ss_pred cCCceEEEEEEEEcCeEEEEecccCCCCCCChh---------HHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEe
Q 006279 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGA---------EQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWF 490 (652)
Q Consensus 420 lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~---------~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~ 490 (652)
.+.||.+.+|++|+++.|||||+||.++..+.. ...|..++..|+.+ +.. .+..++++|||
T Consensus 65 wSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r--~~~--------~~~~~~~lF~f 134 (356)
T PTZ00312 65 RSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAE--CSA--------FISPSDPLFIF 134 (356)
T ss_pred ccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHH--Hhh--------ccCCCCcEEEe
Confidence 688999999999999999999999999987653 23577888888865 321 23457899999
Q ss_pred CccCcccccChH--HHHH------HHh------hcchHHHhhhhhhhHHHhc-------------CCccccccccCcCCC
Q 006279 491 GDLNYRLNMMDT--EVRE------LVA------QKRWDKLINSDQLSKELHS-------------GHVFEGWKEGVINFP 543 (652)
Q Consensus 491 GDLNYRI~l~~~--~v~~------lI~------~~~~~~LL~~DQL~~e~~~-------------g~vF~gf~Eg~I~Fp 543 (652)
||||||++...- -+++ .++ ...|.+|+++|||..|+++ .+.|.++.|.+|+||
T Consensus 135 GDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~fd~e~q~l~~~va~~s~~eLaE~pI~Fp 214 (356)
T PTZ00312 135 GDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRFDLELQRLMDVVAQQSGVELAEFAIRFP 214 (356)
T ss_pred ccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhhhhhhhhhhhhhhhhcccchhcccccCC
Confidence 999999985432 1110 111 2458899999999999985 677889999999999
Q ss_pred CCcccccC----------------CccCCCC------------------------------------CC-CCCCcccCCC
Q 006279 544 PTYKYEIN----------------SDRYVGE------------------------------------NP-KEGEKKRSPA 570 (652)
Q Consensus 544 PTYKy~~~----------------Sd~Y~~~------------------------------------~~-k~~~KkR~PS 570 (652)
||||--.. ...|... -| ....+.|+||
T Consensus 215 PTYkrva~r~~~~~~~~~a~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~~d~i~~~~~l~~~ta~P~r~~~~~r~pa 294 (356)
T PTZ00312 215 PTYPRVAERTNTGAQIESAGANVAASVYGVKDVAAKLDNQQRKKAAKDLKGTADAILASVVLTRVTAIPHRNYCRDRLPA 294 (356)
T ss_pred CcchhhhhhcCCcchhhhcccccccchhcccccccccccccccchhhhccCccceeeeeeeeecccccCCcchhcccchh
Confidence 99993221 0111100 01 1234899999
Q ss_pred cccceeeecCc----------------------------eeEEEeccCCCCCCCCCCeeeEE
Q 006279 571 WCDRILWLGKG----------------------------IKQLAYTRAEILLSDHRPVSSTF 604 (652)
Q Consensus 571 WCDRIL~~g~~----------------------------i~~l~Y~s~e~~~SDHrPV~A~F 604 (652)
|||||||...| ..+..|.+.++..+||.+|...|
T Consensus 295 wcdrvl~~~~~~~~~~~~r~~~a~~~~~aa~~~~~~~~~~~~~~Y~s~~L~htDH~~V~~lF 356 (356)
T PTZ00312 295 WCDRVLWNPAGLELMTGDRSRSASPQSAAASKGDQASGQSCRYAYRSIDLIHTDHDGVFLLF 356 (356)
T ss_pred hhheeeechhhhhhhcCccccCCCcchhhhccCCcccchhhhheeeeeeeeeccCccceecC
Confidence 99999998532 23467889999999999998776
No 6
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1e-28 Score=232.37 Aligned_cols=142 Identities=45% Similarity=0.722 Sum_probs=129.0
Q ss_pred CEEEEEeeeceeEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHH
Q 006279 378 KYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRN 457 (652)
Q Consensus 378 ~Yv~v~S~qMvGi~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN 457 (652)
.|+++.+.||+|+++.+|++.++..++.+++++++++|+||++||||+|++++.++++.+|||||||+||.++.+ ++||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~-~~r~ 80 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVY-ERRN 80 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhH-HHhh
Confidence 699999999999999999999999999999999999999999999999999999999999999999999988643 3399
Q ss_pred hhHHHHHhhcccCCCCCCCCCCCCCC-cceEEEeCccCcccccC-hHHHHHHHhhcchHHHhhhh
Q 006279 458 SDVSEIRRRTRFSSVFDTDQPQTIPS-HDQIFWFGDLNYRLNMM-DTEVRELVAQKRWDKLINSD 520 (652)
Q Consensus 458 ~D~~eIl~r~~F~~~~~~~~p~~I~d-hD~Vfw~GDLNYRI~l~-~~~v~~lI~~~~~~~LL~~D 520 (652)
+|+.+|+.++.|........|..+.. ||.|||+||||||+..+ +.++..++..+.|+.|+++|
T Consensus 81 ~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 81 EDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred ccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCcccccchhhhhhcchhhhhccC
Confidence 99999999999976555555655555 89999999999999988 88899999999999888875
No 7
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.70 E-value=1.3e-17 Score=172.35 Aligned_cols=166 Identities=31% Similarity=0.452 Sum_probs=106.4
Q ss_pred cCCceEEEEEEEEcCeEEEEecccCCCCCCCh---------hHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEe
Q 006279 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDG---------AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWF 490 (652)
Q Consensus 420 lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~---------~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~ 490 (652)
++.||-.-.++.|++.-|.|||.||-....+- ....|.+.+.-+|.++.= .-...|.+|+|
T Consensus 154 ~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~----------~~~~~~~~fVf 223 (391)
T KOG1976|consen 154 NQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDE----------EGLRNDAIFVF 223 (391)
T ss_pred hhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHh----------hccCceEEEEe
Confidence 56799999999999999999999996554321 123455555555554321 11235689999
Q ss_pred CccCcccccCh-----------HHHH--------HH---------------HhhcchH-------------HHhhhhhhh
Q 006279 491 GDLNYRLNMMD-----------TEVR--------EL---------------VAQKRWD-------------KLINSDQLS 523 (652)
Q Consensus 491 GDLNYRI~l~~-----------~~v~--------~l---------------I~~~~~~-------------~LL~~DQL~ 523 (652)
|||||||+... ..+. ++ |+++.|+ .++.+|
T Consensus 224 GdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vEkk~FDyfnh~~f~d~~r~~~~~~d--- 300 (391)
T KOG1976|consen 224 GDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVEKKRFDYFNHDWFFDLGRGMVKRYD--- 300 (391)
T ss_pred cccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEeehhhcchhhhHHHHHcCchhhhhcc---
Confidence 99999998432 0111 11 1112121 222222
Q ss_pred HHHhcCCcccc-ccccCcCCCCCcccccCCccCCCCCCCCCCcccCCCcccceeeecCc----------eeEEEecc--C
Q 006279 524 KELHSGHVFEG-WKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKG----------IKQLAYTR--A 590 (652)
Q Consensus 524 ~e~~~g~vF~g-f~Eg~I~FpPTYKy~~~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g~~----------i~~l~Y~s--~ 590 (652)
+|+. .|+. ..|..|.|||||.|..+... ...-.+.|+||||||||+.... -+.+.|.. .
T Consensus 301 kEl~---nf~~kl~E~~i~FpPsypysed~~~-----~E~~m~TrcPAWcDRILmn~~a~eLv~~~e~e~~~~~Y~~vg~ 372 (391)
T KOG1976|consen 301 KELA---NFAFKLKEETIFFPPSYPYSEDDSG-----KEEFMRTRCPAWCDRILMNDRANELVKHDEFEASGLYYGLVGE 372 (391)
T ss_pred hHHH---HHHHHHhheeecCCCCCCCCcCccc-----hHHHHhccChHhhhhhhcCccHHHHhhccccCcccceeccccc
Confidence 1111 3443 77999999999999864321 0112479999999999998532 13467887 5
Q ss_pred CCCCCCCCCeeeEEEE
Q 006279 591 EILLSDHRPVSSTFLV 606 (652)
Q Consensus 591 e~~~SDHrPV~A~F~v 606 (652)
+.+..|||||...|.+
T Consensus 373 e~c~GdHKpVfl~~~i 388 (391)
T KOG1976|consen 373 EKCVGDHKPVFLHASI 388 (391)
T ss_pred ccccCCCcceEEEEee
Confidence 7899999999998875
No 8
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.48 E-value=1.9e-06 Score=90.49 Aligned_cols=70 Identities=23% Similarity=0.351 Sum_probs=52.1
Q ss_pred cccCCceEEEEEEEEcCeEEEEecccCCCCCC----ChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCcc
Q 006279 418 GYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQK----DGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDL 493 (652)
Q Consensus 418 G~lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k----~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDL 493 (652)
....+||.+.+++.+.+..+.|+|+||.+... ......|..++.+|.+.+.- . .+...+.||++|||
T Consensus 116 d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~-----~----~~~~~~pvIl~GDf 186 (283)
T TIGR03395 116 DNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDS-----K----NIPKDETVLIGGDL 186 (283)
T ss_pred ccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhh-----c----cCCCCceEEEEeeC
Confidence 34578999999999999999999999998531 11246799999999775321 1 12234679999999
Q ss_pred Ccc
Q 006279 494 NYR 496 (652)
Q Consensus 494 NYR 496 (652)
|..
T Consensus 187 N~~ 189 (283)
T TIGR03395 187 NVN 189 (283)
T ss_pred CCC
Confidence 984
No 9
>PRK05421 hypothetical protein; Provisional
Probab=98.37 E-value=4.4e-06 Score=86.34 Aligned_cols=127 Identities=17% Similarity=0.221 Sum_probs=76.0
Q ss_pred ceEEEEEEEE-cCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcccccCh
Q 006279 423 KGSVSVSMTL-FQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMD 501 (652)
Q Consensus 423 KGaVsVs~~l-~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~ 501 (652)
||++.+.+.+ .+..|.++|+||.+.... ...|..++..|.+.+. .. ..++|++||||-.-....
T Consensus 135 r~~l~a~~~~~~g~~l~v~ntHl~~~~~~--~~~r~~q~~~l~~~~~-----~~--------~~p~Il~GDFN~~~~~~~ 199 (263)
T PRK05421 135 KSALITEYPLPNGRTLLVVNIHAINFSLG--VDVYSKQLEPIGDQIA-----HH--------SGPVILAGDFNTWSRKRM 199 (263)
T ss_pred ceeEEEEEEeCCCCEEEEEEECccccCcC--hHHHHHHHHHHHHHHH-----hC--------CCCEEEEcccccCcccch
Confidence 7888888888 566799999999865322 3457788888766431 00 137999999995111111
Q ss_pred HHHHHHHhhcchHHHhhhhhhhHHHhcCCccccccccCcCCCCCcccccCCccCCCCCCCCCCcccCCCcccceeeecCc
Q 006279 502 TEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKG 581 (652)
Q Consensus 502 ~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g~~ 581 (652)
+..+. +++. . |+.. .+|++.-++ ..+ ..| -|+||.. +
T Consensus 200 ~~l~~---------~~~~------~-------~l~~--~~~~~~~~~----~~~---------~~~----ID~I~~~--~ 236 (263)
T PRK05421 200 NALKR---------FARE------L-------GLKE--VRFTDDQRR----RAF---------GRP----LDFVFYR--G 236 (263)
T ss_pred HHHHH---------HHHH------c-------CCCc--cCcCCcccc----ccc---------CCC----cceEEEC--C
Confidence 11111 1110 0 1111 134332211 001 134 5999974 6
Q ss_pred eeEEEeccCCCCCCCCCCeeeEEEEE
Q 006279 582 IKQLAYTRAEILLSDHRPVSSTFLVQ 607 (652)
Q Consensus 582 i~~l~Y~s~e~~~SDHrPV~A~F~v~ 607 (652)
+....+...+...|||+||.|.|.+.
T Consensus 237 ~~v~~~~v~~~~~SDH~Pv~a~l~l~ 262 (263)
T PRK05421 237 LNVSKASVLVTRASDHNPLLVEFSLK 262 (263)
T ss_pred cEEEEEEcCCCCCCCccCEEEEEEec
Confidence 77777776677899999999999763
No 10
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.22 E-value=6.4e-07 Score=85.91 Aligned_cols=97 Identities=24% Similarity=0.308 Sum_probs=52.8
Q ss_pred eeEEEEEEEeccccccccceeEeEEeeccc---cccCCceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHH
Q 006279 388 VGIYVSIWVRKRLRRHINNLKVSPVGVGLM---GYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIR 464 (652)
Q Consensus 388 vGi~L~VfVr~~l~~~I~~v~vs~VgtGi~---G~lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl 464 (652)
.+..++|++|.++...+........+.+.. ....+++.+.+++. +..|+++++|+.+... .|..+..+++
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~-----~~~~~~~~~~ 144 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSND-----ERQEQWRELL 144 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHH-----HHHHHHHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccch-----hhhhhhhhhh
Confidence 455677888887655444433333233322 22445666666666 9999999999998532 2222222333
Q ss_pred hhcc-cCCCCCCCCCCCCCCcceEEEeCccCcccccC
Q 006279 465 RRTR-FSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMM 500 (652)
Q Consensus 465 ~r~~-F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~ 500 (652)
..+. +.. ..+ ..++|++||||.+....
T Consensus 145 ~~~~~~~~----~~~-----~~~~iv~GDfN~~~~~~ 172 (249)
T PF03372_consen 145 ARIQKIYA----DNP-----NEPVIVMGDFNSRPDSR 172 (249)
T ss_dssp HHHHHHHH----TSS-----CCEEEEEEE-SS-BSSG
T ss_pred hhhhhccc----ccc-----cceEEEEeecccCCccc
Confidence 2211 100 000 01799999999988643
No 11
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=97.69 E-value=0.00027 Score=73.88 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=41.9
Q ss_pred ceEEEEEEEEc-CeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccC
Q 006279 423 KGSVSVSMTLF-QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLN 494 (652)
Q Consensus 423 KGaVsVs~~l~-~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLN 494 (652)
.|++-+.+... +..|-+||+||+=.+ +.|.++...|+..+.+. +-.+++++||||
T Consensus 119 Rgal~a~~~~~~g~~l~V~~~HL~l~~-----~~R~~Q~~~L~~~~~l~------------~~~p~vl~GDFN 174 (259)
T COG3568 119 RGALLAEIELPGGKPLRVINAHLGLSE-----ESRLRQAAALLALAGLP------------ALNPTVLMGDFN 174 (259)
T ss_pred ceeEEEEEEcCCCCEEEEEEEeccccH-----HHHHHHHHHHHhhccCc------------ccCceEEEccCC
Confidence 68888888884 668999999999553 56888888888733221 112799999999
No 12
>PRK11756 exonuclease III; Provisional
Probab=97.47 E-value=0.0014 Score=67.41 Aligned_cols=65 Identities=8% Similarity=0.195 Sum_probs=38.7
Q ss_pred CceEEEEEEEEcCeEEEEecccCCCCCCC---hhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcc
Q 006279 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKD---GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (652)
Q Consensus 422 NKGaVsVs~~l~~ts~cFVn~HLaAg~k~---~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (652)
..+.+.+.+...+..|.|+|+|++.+... .....|...+..|...+.- . .....++|++||||--
T Consensus 88 ~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~--~--------~~~~~pvIl~GDfN~~ 155 (268)
T PRK11756 88 QRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLET--E--------LSPDNPLLIMGDMNIS 155 (268)
T ss_pred cCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHH--H--------hccCCCEEEEeecccC
Confidence 35788888887655699999999887531 1122333334434332210 0 0112479999999963
No 13
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.28 E-value=0.0035 Score=63.11 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=23.5
Q ss_pred EEEeeeeCCCCCCCCCCCc-ccccCCCCCCCEEEEeeeee
Q 006279 107 VTIGTWNVAGRQPYEDLDI-DDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 107 i~vgTwNV~G~~p~~~ldl-~~WL~~~~~~DIYvlGfQEi 145 (652)
+.|.||||+|..... ..+ .+||... .||| |+|||+
T Consensus 1 lri~t~Nv~g~~~~~-~~~~~~~l~~~-~~DI--v~LQE~ 36 (255)
T TIGR00633 1 MKIISWNVNGLRARL-HKLFLDWLKEE-QPDV--LCLQET 36 (255)
T ss_pred CEEEEEecccHHHHh-hccHHHHHHhc-CCCE--EEEEec
Confidence 358899999954322 234 7777554 4587 678998
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=97.06 E-value=0.0036 Score=78.90 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=42.2
Q ss_pred CCceEEEEEEEEc----C-eEEEEecccCCCCCCChhHHHHHhhHHHHHhhcc--cCCCCCCCCCCCCCCcceEEEeCcc
Q 006279 421 GNKGSVSVSMTLF----Q-SRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTR--FSSVFDTDQPQTIPSHDQIFWFGDL 493 (652)
Q Consensus 421 GNKGaVsVs~~l~----~-ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~--F~~~~~~~~p~~I~dhD~Vfw~GDL 493 (652)
.+||.+.+.+.+. + ..+-|+|+||.+.... ..|.+++.+|.+-+. .... .....+....++|++|||
T Consensus 131 ~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~---~~R~~Q~~ql~~~i~~~i~~~---~~~~~~~~~~PvILaGDF 204 (1452)
T PTZ00297 131 VRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL---PSTSSQVQETRRFVESVIANV---YEQNNDGAEIPFVIAGDF 204 (1452)
T ss_pred cccceEEEEEEccccCCCCceEEEEEeCCCCCCCc---chHHHHHHHHHHHHHHhhhhh---cccccCCCCCCEEEEeeC
Confidence 4789988888884 2 4799999999987543 224455555543211 1000 000122334589999999
Q ss_pred Cc
Q 006279 494 NY 495 (652)
Q Consensus 494 NY 495 (652)
|-
T Consensus 205 N~ 206 (1452)
T PTZ00297 205 NI 206 (1452)
T ss_pred CC
Confidence 94
No 15
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=96.16 E-value=0.031 Score=59.14 Aligned_cols=104 Identities=12% Similarity=0.113 Sum_probs=53.7
Q ss_pred CCCEEEEEeeece----eEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCe---EEEEecccCCCCC
Q 006279 376 RPKYVRIVSKQMV----GIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQS---RLCLVCSHLTSGQ 448 (652)
Q Consensus 376 ~~~Yv~v~S~qMv----Gi~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~t---s~cFVn~HLaAg~ 448 (652)
+..|-.+.|..+. |....++-|++....+..-...- +..-.+-.=.-=...++|+...+ .|.+|++|+.+..
T Consensus 77 ~~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f~d-~~~~~~~~F~ReP~~~~F~~~~~~~~~F~li~~H~~p~~ 155 (276)
T smart00476 77 PNTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLYDD-GCECGNDVFSREPFVVKFSSPSTAVKEFVIVPLHTTPEA 155 (276)
T ss_pred CCCceEEecCCCCCCCCCEEEEEEEecceEEEcccceecC-CCCCccccccccceEEEEEeCCCCCccEEEEEecCChHH
Confidence 3467777765442 46666777777644433222110 00000000022356677777665 7999999998853
Q ss_pred CChhHHHHHhhHHH-HHhhcccCCCCCCCCCCCCCCcceEEEeCccCcc
Q 006279 449 KDGAEQRRNSDVSE-IRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (652)
Q Consensus 449 k~~~~~rRN~D~~e-Il~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (652)
..++...+.. ++.... . . ..+.||++||||--
T Consensus 156 ----~~~e~~aL~~v~~~~~~--~---------~-~~~~villGDFNa~ 188 (276)
T smart00476 156 ----AVAEIDALYDVYLDVRQ--K---------W-GTEDVIFMGDFNAG 188 (276)
T ss_pred ----HHHHHHHHHHHHHHHHH--h---------h-ccCCEEEEccCCCC
Confidence 2233333222 222110 0 0 12579999999983
No 16
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=96.13 E-value=0.021 Score=66.34 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=43.3
Q ss_pred EEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcccccChHHHHHHHhhcc
Q 006279 436 RLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKR 512 (652)
Q Consensus 436 s~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~~~ 512 (652)
.||++|+||-.+.... .-|..++..|++.+.- ... .. .-+||++||||- .+.+.+.++|.++.
T Consensus 418 ~l~VaNTHL~~~p~~~--dvRl~Q~~~Ll~~l~~--~~~---~~----~~PvIlcGDFNS---~P~S~vy~lLt~G~ 480 (606)
T PLN03144 418 LLCVANTHIHANQELK--DVKLWQVHTLLKGLEK--IAA---SA----DIPMLVCGDFNS---VPGSAPHCLLATGK 480 (606)
T ss_pred EEEEEEeeeccCCccc--hhHHHHHHHHHHHHHH--Hhh---cC----CCceEEeccCCC---CCCChhhhhhhcCC
Confidence 5999999997665432 3567777777765321 100 01 126999999998 88888888888765
No 17
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=95.86 E-value=0.052 Score=56.39 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=26.1
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006279 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 108 ~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
.|.||||||..-.....+.+||... .||| |+|||+
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~~-~~DI--iclQEt 36 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNSV-DADV--FCIQES 36 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHhc-CCCE--EEEEee
Confidence 5899999996543334588999654 4687 788999
No 18
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.82 E-value=0.045 Score=58.74 Aligned_cols=132 Identities=19% Similarity=0.251 Sum_probs=72.6
Q ss_pred CCceEEEEEEEE-cCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccccc
Q 006279 421 GNKGSVSVSMTL-FQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNM 499 (652)
Q Consensus 421 GNKGaVsVs~~l-~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l 499 (652)
+-||++.+...+ +++.+..+|.|..-..-..+ ..| ++..++.+.+. . .. -.||++||||- .
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~-~~~-~ql~~l~~~i~--~---~~--------gpvIlaGDfNa---~ 234 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVGTD-PQR-AQLLELGDQIA--G---HS--------GPVILAGDFNA---P 234 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCCcc-HHH-HHHHHHHHHHH--c---CC--------CCeEEeecCCC---c
Confidence 468877776655 47899999999984332222 334 66666655421 1 11 26999999997 3
Q ss_pred ChHHH-HHHHhhcchHHHhhhhhhhHHHhcCCccccccccCcCCCCCcccccCCccCCCCCCCCCCcccCCCc-ccceee
Q 006279 500 MDTEV-RELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAW-CDRILW 577 (652)
Q Consensus 500 ~~~~v-~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~~~~~k~~~KkR~PSW-CDRIL~ 577 (652)
+-..+ +.+- .|...+.. .+.| -.| ..|-|+= -.|.+.| .|.|++
T Consensus 235 pWS~~~~R~~------~l~~~~~~---~~aG-----~~~--~~~~p~~------------------~~r~~g~PIDhvf~ 280 (309)
T COG3021 235 PWSRTAKRMA------ALGGLRAA---PRAG-----LWE--VRFTPDE------------------RRRAFGLPIDHVFY 280 (309)
T ss_pred chhHHHHHHH------Hhcccccc---hhcc-----CCc--cccCHHH------------------HhhccCCCcceeee
Confidence 32222 2221 12111110 1111 111 1222220 1223333 799999
Q ss_pred ecCceeEEEeccCCCCCCCCCCeeeEEEE
Q 006279 578 LGKGIKQLAYTRAEILLSDHRPVSSTFLV 606 (652)
Q Consensus 578 ~g~~i~~l~Y~s~e~~~SDHrPV~A~F~v 606 (652)
+| +....-.+.+...|||+||.+.|+.
T Consensus 281 rg--l~~~ka~rl~~~gSDH~PLLveF~~ 307 (309)
T COG3021 281 RG--LTVMKARRLPDRGSDHRPLLVEFSY 307 (309)
T ss_pred cC--cchhhhhhccccCCCCCceEEEEEe
Confidence 98 4333334456689999999999974
No 19
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=95.45 E-value=0.072 Score=54.34 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=23.3
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006279 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 108 ~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
.|.||||+|..... ..+..||... .||| |+|||+
T Consensus 2 ri~t~Ni~g~~~~~-~~~~~~l~~~-~~DI--i~LQE~ 35 (254)
T TIGR00195 2 KIISWNVNGLRARL-HKGLAWLKEN-QPDV--LCLQET 35 (254)
T ss_pred EEEEEEcCcHHHhH-HHHHHHHHhc-CCCE--EEEEec
Confidence 58999999953322 2367888654 4687 558996
No 20
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=95.14 E-value=0.11 Score=56.85 Aligned_cols=199 Identities=19% Similarity=0.172 Sum_probs=107.8
Q ss_pred EEeeeceeEEEEEEEeccccccccce-----eEeEEeeccccccCCceEEEEEEEEcCeEEEEecccCCCCCC---ChhH
Q 006279 382 IVSKQMVGIYVSIWVRKRLRRHINNL-----KVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQK---DGAE 453 (652)
Q Consensus 382 v~S~qMvGi~L~VfVr~~l~~~I~~v-----~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k---~~~~ 453 (652)
..|.-| |--|+||.|--+.....+. .-..+=. +.+.|-||--..++.+.+..+.+.|+||-|--. +.-.
T Consensus 73 FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~r--GDWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL 149 (422)
T KOG3873|consen 73 FHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHR--GDWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYL 149 (422)
T ss_pred hhcccc-cCceEEeecCchhhhhhhccccCCccceeee--ccccccceeEEEEEeeCCEEeeeeehhccccccccCchhh
Confidence 345566 8888999887664322211 1111212 245678988888888889999999999988532 2224
Q ss_pred HHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcccc-cChHHHH--HHHhhcchHHHhhhhhhhHHHhcCC
Q 006279 454 QRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN-MMDTEVR--ELVAQKRWDKLINSDQLSKELHSGH 530 (652)
Q Consensus 454 ~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~-l~~~~v~--~lI~~~~~~~LL~~DQL~~e~~~g~ 530 (652)
-.|-++.-++.+-++- +-...|.||..||||-+=. ++..-.. +++ ..|..|. -||.-..--++.
T Consensus 150 ~HR~~QAwdlaqfi~~----------t~q~~~vVI~~GDLN~~P~dl~~~ll~~a~l~--daw~~~h-~~q~e~~~~r~s 216 (422)
T KOG3873|consen 150 CHRVAQAWDLAQFIRA----------TRQNADVVILAGDLNMQPQDLGHKLLLSAGLV--DAWTSLH-LDQCESDSFRLS 216 (422)
T ss_pred hHHHHHHHHHHHHHHH----------HhcCCcEEEEecCCCCCccccceeeeeccchh--hhHhhhc-hhhhcCcccccc
Confidence 4677777776542221 1123579999999997643 3322111 122 2344332 233322222222
Q ss_pred ccccccccCcCCC--CCccc-ccCCccCCCCCCCCCCcccCCCcccceeeecCc--eeEEEec----c---CCCCCCCCC
Q 006279 531 VFEGWKEGVINFP--PTYKY-EINSDRYVGENPKEGEKKRSPAWCDRILWLGKG--IKQLAYT----R---AEILLSDHR 598 (652)
Q Consensus 531 vF~gf~Eg~I~Fp--PTYKy-~~~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g~~--i~~l~Y~----s---~e~~~SDHr 598 (652)
-|++..||.-+=- -||.- ..+.+... -+| .|.||+++.. ++.-.|. + .+..+|||-
T Consensus 217 ~~~~l~~g~tcd~~~N~y~~aqk~~ddp~--------~~R----iDYvl~k~~~~~~~~a~~~~t~~rvP~~d~s~SDH~ 284 (422)
T KOG3873|consen 217 EDKELVEGNTCDSPLNCYTSAQKREDDPL--------GKR----IDYVLVKPGDCNAKIAEVEFTEPRVPGEDCSYSDHE 284 (422)
T ss_pred hhhhhhcCCcccCcchhhhHHHhCCCCcc--------cee----eeEEEEcCcceEEEeeeEEecCCCCCCCCCCccchh
Confidence 2444445541111 12220 01111111 166 7999999753 2222232 2 246789999
Q ss_pred CeeeEEEEEE
Q 006279 599 PVSSTFLVQV 608 (652)
Q Consensus 599 PV~A~F~v~v 608 (652)
.+.|++.+.-
T Consensus 285 Al~a~L~I~~ 294 (422)
T KOG3873|consen 285 ALMATLKIFK 294 (422)
T ss_pred hheeEEEeec
Confidence 9999998764
No 21
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=94.18 E-value=0.059 Score=47.72 Aligned_cols=33 Identities=21% Similarity=0.114 Sum_probs=17.4
Q ss_pred CCcccceeeecCceeE-EEeccCCCCCCCCCCee
Q 006279 569 PAWCDRILWLGKGIKQ-LAYTRAEILLSDHRPVS 601 (652)
Q Consensus 569 PSWCDRIL~~g~~i~~-l~Y~s~e~~~SDHrPV~ 601 (652)
.+--|+||....-... ..-.......|||+||+
T Consensus 86 ~s~iD~~~~s~~~~~~~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 86 GSRIDLILTSDNLLSWCVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp EE--EEEEEECCGCCCEEEEEETTSSSSSB--EE
T ss_pred CceEEEEEECChHHhcCcEEEeCCCCCCCccCCC
Confidence 3448999987643222 11122467889999995
No 22
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=93.03 E-value=0.43 Score=50.62 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=36.9
Q ss_pred CCceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCc
Q 006279 421 GNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (652)
Q Consensus 421 GNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (652)
.....+++++ .+ +.|.+.||.+... ..|.+.+..|..- |.+ ..| +..++++||||=
T Consensus 140 ~~Rpilgi~i--~~--~~ffstH~~a~~~----~da~aiV~~I~~~--f~~----~~~-----~~pw~I~GDFNr 195 (271)
T PRK15251 140 ASRPIIGIRI--GN--DVFFSIHALANGG----TDAGAIVRAVHNF--FRP----NMR-----HINWMIAGDFNR 195 (271)
T ss_pred cccceEEEEe--cC--eEEEEeeecCCCC----ccHHHHHHHHHHH--Hhh----ccC-----CCCEEEeccCCC
Confidence 3466677765 33 7899999999832 2367777777654 320 111 347999999994
No 23
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=92.95 E-value=0.039 Score=57.31 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=31.4
Q ss_pred EEEEEEEEcCeEEEEecccCCCCCCCh-hHHHH---HhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCc
Q 006279 425 SVSVSMTLFQSRLCLVCSHLTSGQKDG-AEQRR---NSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (652)
Q Consensus 425 aVsVs~~l~~ts~cFVn~HLaAg~k~~-~~~rR---N~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (652)
+-.|...+. .|.+||+..+.+.... ....| ..++.+.++.+. ....+||+||||=
T Consensus 89 GR~I~~~~~--~~~l~nvY~Pn~~~~~~r~~~K~~~~~~~~~~l~~l~--------------~~~~~Ii~GD~Nv 147 (250)
T PRK13911 89 GRVITCEFE--SFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALE--------------LKKPVIVCGDLNV 147 (250)
T ss_pred CCEEEEEEC--CEEEEEEEecCCCCCCcchHHHHHHHHHHHHHHHhcc--------------cCCCEEEEccccC
Confidence 334455553 5999999999986431 11222 223334443210 1237999999995
No 24
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=91.08 E-value=0.68 Score=49.25 Aligned_cols=62 Identities=23% Similarity=0.412 Sum_probs=41.3
Q ss_pred EEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006279 426 VSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (652)
Q Consensus 426 VsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (652)
..+...+.+..+||.++||.+-... ..+|.+++.+.+.+++=. + ...| .-.||+.||+|.|=
T Consensus 195 ~I~Ev~v~G~Kl~l~tsHLEStr~h--~P~r~~qF~~~~~k~~Ea-I--e~lP-----nA~ViFGGD~NlrD 256 (349)
T KOG2756|consen 195 LIVEVNVSGNKLCLMTSHLESTRGH--APERMNQFKMVLKKMQEA-I--ESLP-----NATVIFGGDTNLRD 256 (349)
T ss_pred EEEEEeecCceEEEEeccccCCCCC--ChHHHHHHHHHHHHHHHH-H--HhCC-----CceEEEcCcccchh
Confidence 3455667888899999999997643 356777776665543210 0 0012 23799999999874
No 25
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=88.42 E-value=0.078 Score=55.83 Aligned_cols=34 Identities=35% Similarity=0.715 Sum_probs=25.0
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006279 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 108 ~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
.+-||||||.--.-.. +-+||....| || |++||+
T Consensus 2 kI~SwNVNgiRar~~~-~~~~l~~~~p-DV--lclQEt 35 (261)
T COG0708 2 KIASWNVNGLRARLKK-LLDWLEEEQP-DV--LCLQET 35 (261)
T ss_pred eeEEEehhhHHHHHHH-HHHHHHHhCC-CE--EEEEec
Confidence 4789999995332222 7899977555 86 899999
No 26
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=79.49 E-value=2.8 Score=47.83 Aligned_cols=93 Identities=22% Similarity=0.177 Sum_probs=56.8
Q ss_pred EEEEeccccccccceeE--eEEeeccccccCCceEEEEEEEEcCe---EEEEecccCCCCCCChhHHHHHhhHHHHHhhc
Q 006279 393 SIWVRKRLRRHINNLKV--SPVGVGLMGYMGNKGSVSVSMTLFQS---RLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRT 467 (652)
Q Consensus 393 ~VfVr~~l~~~I~~v~v--s~VgtGi~G~lGNKGaVsVs~~l~~t---s~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~ 467 (652)
+|+-+..+-+.+.+-.+ .-.+.|++..-.=++.|+..|++-+. -++.+|+||--+...++ .|-+++.-|+..+
T Consensus 205 ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~--vrL~Q~~iiL~~~ 282 (495)
T KOG2338|consen 205 AILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSD--VRLAQVYIILAEL 282 (495)
T ss_pred EEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccc--hhhHHHHHHHHHH
Confidence 34445554444433322 23566666543235666677766554 79999999998876655 4777888887653
Q ss_pred c-cCCCCCCCCCCCCCCcceEEEeCccCc
Q 006279 468 R-FSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (652)
Q Consensus 468 ~-F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (652)
. |.... ..|=+||++||||-
T Consensus 283 ~~~~~~~--------~~~~pi~l~GDfNt 303 (495)
T KOG2338|consen 283 EKMSKSS--------KSHWPIFLCGDFNT 303 (495)
T ss_pred HHHHhhc--------ccCCCeEEecCCCC
Confidence 2 21100 04558999999995
No 27
>PRK11756 exonuclease III; Provisional
Probab=78.90 E-value=0.5 Score=48.68 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=23.0
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006279 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 108 ~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
.|.||||+|..-.- ..|..||... .||| |+|||+
T Consensus 2 ri~T~Nv~g~~~~~-~~i~~~i~~~-~pDI--i~LQE~ 35 (268)
T PRK11756 2 KFVSFNINGLRARP-HQLEAIIEKH-QPDV--IGLQET 35 (268)
T ss_pred EEEEEEcCCHHHHH-HHHHHHHHhc-CCCE--EEEEec
Confidence 47799999943211 1267888553 4687 669998
No 28
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.22 E-value=1.5 Score=44.09 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=30.2
Q ss_pred eEEEEecccCCCCCCChh--HHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006279 435 SRLCLVCSHLTSGQKDGA--EQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (652)
Q Consensus 435 ts~cFVn~HLaAg~k~~~--~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (652)
..|.++|+|++++...+. ...|...+..+.+.+. .. +.....+|++||||--.
T Consensus 100 ~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~--~~--------~~~~~~~Il~GDFN~~~ 154 (255)
T TIGR00633 100 DGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYE--KE--------LDAGKPVIICGDMNVAH 154 (255)
T ss_pred CCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHH--HH--------HhcCCcEEEEeecccCC
Confidence 368899999988763222 2334444544443210 00 01124799999999754
No 29
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=68.19 E-value=1.7 Score=44.40 Aligned_cols=53 Identities=11% Similarity=0.235 Sum_probs=28.4
Q ss_pred EEEEecccCCCCCCCh--hHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcccc
Q 006279 436 RLCLVCSHLTSGQKDG--AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN 498 (652)
Q Consensus 436 s~cFVn~HLaAg~k~~--~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~ 498 (652)
.|.++|+|+.++.... ....|..-+..|...+. .... ....||++||||-...
T Consensus 98 ~~~l~~~~~p~~~~~~~~~~~~r~~~~~~l~~~~~--~~~~--------~~~pvIi~GDfN~~~~ 152 (254)
T TIGR00195 98 SFLVINGYFPNGSRDDSEKLPYKLQWLEALQNYLE--KLVD--------KDKPVLICGDMNIAPT 152 (254)
T ss_pred CEEEEEEEccCCCCCCCccHHHHHHHHHHHHHHHH--HHHh--------cCCcEEEEeecccCCC
Confidence 4889999999853222 12234343434433211 0000 1136999999996443
No 30
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=62.23 E-value=6.1 Score=42.17 Aligned_cols=40 Identities=30% Similarity=0.596 Sum_probs=27.1
Q ss_pred EEEeeeeCCCCCCCCCCCccccc-------CCCCCCCEEEEeeeeeeeCCCC
Q 006279 107 VTIGTWNVAGRQPYEDLDIDDWL-------CTQEPADIYIFGFQEVVPLNAG 151 (652)
Q Consensus 107 i~vgTwNV~G~~p~~~ldl~~WL-------~~~~~~DIYvlGfQEiV~Lna~ 151 (652)
..|||||+.|..-.++ +.|= ..++++|| |-|||.=.|.+.
T Consensus 25 ~~~~twn~qg~s~~~~---~kw~~~v~~l~~~~~~~DI--la~QEags~p~~ 71 (271)
T PRK15251 25 YKVATWNLQGSSASTE---SKWNVNVRQLLSGENPADI--LMVQEAGSLPSS 71 (271)
T ss_pred ceEEEeecCCCCCCCh---hhhhhhHHHHhcCCCCCCE--EEEEecCCCccc
Confidence 4579999999755444 4564 34567887 678999444443
No 31
>PRK05421 hypothetical protein; Provisional
Probab=52.17 E-value=7.7 Score=40.35 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=21.7
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006279 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 106 ri~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
.+.|-||||.+..-......-.++ ...||| |+|||+
T Consensus 43 ~lri~t~NI~~~~~~~~~~~l~~l--~~~~Di--I~LQEv 78 (263)
T PRK05421 43 RLRLLVWNIYKQQRAGWLSVLKNL--GKDADL--VLLQEA 78 (263)
T ss_pred ceeEEEEEccccccccHHHHHHHh--ccCCCE--EEEEec
Confidence 367889999985432221122334 344565 889999
No 32
>TIGR02616 tnaC_leader tryptophanase leader peptide. Members of this family are the apparent leader peptides of tryptophanase operons in Esherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae type b, and related species. All members of the seed alignment are examples ORFs upstream of tryptophanase, with a start codon, a conserved single Trp residue, and several other conserved residues. It is suggested (Konan KV and Yanofsky C) that the nascent peptide interacts with the ribosome once (if) the ribosome reaches the stop codon. Note that this model describes a much broader set (and shorter protein region) than Pfam model pfam08053.
Probab=27.31 E-value=14 Score=26.17 Aligned_cols=16 Identities=38% Similarity=0.764 Sum_probs=12.8
Q ss_pred HHHhhhccCCCCcccc
Q 006279 17 VMKKWLNIKPKVYDFS 32 (652)
Q Consensus 17 v~~Kwlni~~~~~df~ 32 (652)
+..|||||-++-++|-
T Consensus 6 ~~s~WfniD~rIsf~F 21 (26)
T TIGR02616 6 VLSKWFNIDNRISFFF 21 (26)
T ss_pred cCCceEEcchhheecc
Confidence 4679999999887763
No 33
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=26.84 E-value=13 Score=25.21 Aligned_cols=14 Identities=50% Similarity=0.942 Sum_probs=10.5
Q ss_pred HHHhhhccCCCCcc
Q 006279 17 VMKKWLNIKPKVYD 30 (652)
Q Consensus 17 v~~Kwlni~~~~~d 30 (652)
|-.|||||..|--|
T Consensus 8 vtskwfnidnkivd 21 (24)
T PF08053_consen 8 VTSKWFNIDNKIVD 21 (24)
T ss_pred EeeeeEeccCeecc
Confidence 34699999887654
No 34
>PRK09806 tryptophanase leader peptide; Provisional
Probab=23.21 E-value=16 Score=25.23 Aligned_cols=15 Identities=47% Similarity=0.877 Sum_probs=11.0
Q ss_pred HHHhhhccCCCCccc
Q 006279 17 VMKKWLNIKPKVYDF 31 (652)
Q Consensus 17 v~~Kwlni~~~~~df 31 (652)
|-.|||||..|--|.
T Consensus 8 vtskwfnidnkivdh 22 (26)
T PRK09806 8 VTSKWFNIDNKIVDH 22 (26)
T ss_pred EeeeEEeccCeeecc
Confidence 346999998876553
No 35
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.02 E-value=33 Score=38.64 Aligned_cols=51 Identities=25% Similarity=0.490 Sum_probs=30.1
Q ss_pred CCcceEEEeCccCcccccChHHHHHHHhhcchHHHhhhhhhhHHHhcCCccccccccCcCCCCCccccc
Q 006279 482 PSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEI 550 (652)
Q Consensus 482 ~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~ 550 (652)
...+.||+=||||| ++|+.--.|+.--++- .++.||.=.+|.=.=|-|-++
T Consensus 350 ~~S~LvIFKGDLNY---------RKL~GD~~W~~Tt~F~---------t~Lrgf~p~n~caLRTiKadv 400 (434)
T KOG3870|consen 350 QKSSLVIFKGDLNY---------RKLTGDRKWDPTTPFS---------TALRGFAPSNICALRTIKADV 400 (434)
T ss_pred hhCcEEEEeccccH---------HHHhccCCCCCCCcHH---------HHhCCCCCCccceeeeeeeee
Confidence 45789999999999 4666555665332221 245566644444445555443
Done!