Query 006279
Match_columns 652
No_of_seqs 386 out of 1183
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 20:46:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 3.1E-90 1E-94 723.5 33.1 229 378-613 78-308 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 2.6E-85 9E-90 687.2 30.2 229 378-609 80-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 2.4E-83 8.2E-88 680.3 33.5 324 78-619 2-328 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 2E-77 7E-82 637.2 31.5 228 378-612 86-326 (357)
5 2imq_X Salivary nitrophorin; f 100.0 6.1E-63 2.1E-67 507.5 24.6 205 378-608 72-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 98.9 2.6E-08 8.9E-13 95.3 14.3 66 418-496 97-162 (256)
7 3teb_A Endonuclease/exonucleas 98.7 1.5E-07 5E-12 91.7 13.0 62 420-497 120-181 (266)
8 1zwx_A SMCL, sphingomyelinase- 98.7 1.3E-07 4.4E-12 94.6 12.0 70 420-498 128-201 (301)
9 4fva_A 5'-tyrosyl-DNA phosphod 98.6 2.5E-07 8.6E-12 88.7 13.4 67 420-496 103-169 (256)
10 4f1h_A Tyrosyl-DNA phosphodies 98.5 1.3E-06 4.5E-11 81.8 14.8 62 421-495 94-155 (250)
11 3l1w_A Uncharacterized protein 98.5 1.3E-06 4.4E-11 85.3 13.8 138 420-607 107-252 (257)
12 4gew_A 5'-tyrosyl-DNA phosphod 98.4 1.8E-06 6.3E-11 91.2 13.9 66 421-496 210-275 (362)
13 3g6s_A Putative endonuclease/e 98.4 8.8E-07 3E-11 87.1 10.8 139 420-607 113-261 (267)
14 3i41_A Beta-hemolysin; beta to 98.4 7.4E-07 2.5E-11 91.6 10.4 70 419-497 146-219 (317)
15 1ako_A Exonuclease III; AP-end 98.4 1.5E-06 5.1E-11 84.6 12.0 68 421-498 87-157 (268)
16 2ddr_A Sphingomyelin phosphodi 98.4 1.5E-06 5E-11 86.9 11.0 69 420-497 128-200 (306)
17 3mpr_A Putative endonuclease/e 98.1 1E-05 3.4E-10 81.8 10.7 62 421-495 118-181 (298)
18 2jc4_A Exodeoxyribonuclease II 97.7 0.00014 4.8E-09 70.1 9.3 53 436-498 98-152 (256)
19 1vyb_A ORF2 contains A reverse 97.6 0.00057 1.9E-08 64.9 12.8 54 425-497 97-150 (238)
20 1wdu_A TRAS1 ORF2P; four-layer 97.4 0.00045 1.5E-08 67.3 8.6 57 422-496 102-158 (245)
21 2o3h_A DNA-(apurinic or apyrim 97.3 0.00036 1.2E-08 69.1 7.4 34 572-605 249-284 (285)
22 2jc5_A Exodeoxyribonuclease; h 97.2 0.00025 8.5E-09 68.5 4.8 36 572-607 220-257 (259)
23 1hd7_A DNA-(apurinic or apyrim 97.2 0.00067 2.3E-08 69.2 8.0 52 435-497 163-215 (318)
24 2a40_B Deoxyribonuclease-1; WA 97.1 0.00028 9.6E-09 69.7 3.6 60 423-497 111-173 (260)
25 4b8c_D Glucose-repressible alc 97.0 0.00015 5.1E-09 83.2 1.1 73 434-511 546-619 (727)
26 2j63_A AP-endonuclease; base e 96.7 0.0044 1.5E-07 68.1 9.7 35 572-606 430-466 (467)
27 2voa_A AF_EXO, XTHA, exodeoxyr 96.4 0.0088 3E-07 57.7 8.8 34 572-605 217-256 (257)
28 3g91_A MTH0212, exodeoxyribonu 96.3 0.003 1E-07 62.0 5.0 36 107-145 4-39 (265)
29 1sr4_B CDT B, cytolethal diste 95.9 0.016 5.6E-07 59.4 8.2 60 422-495 121-180 (261)
30 3ngq_A CCR4-NOT transcription 95.7 0.031 1.1E-06 60.2 9.6 74 434-512 194-270 (398)
31 2ei9_A Non-LTR retrotransposon 94.9 0.078 2.7E-06 52.5 9.0 36 106-145 7-42 (240)
32 4fva_A 5'-tyrosyl-DNA phosphod 90.7 0.038 1.3E-06 52.4 -0.6 39 104-145 11-53 (256)
33 4f1h_A Tyrosyl-DNA phosphodies 87.1 0.1 3.5E-06 48.3 -0.4 37 106-145 3-43 (250)
34 4gz1_A Tyrosyl-DNA phosphodies 84.2 0.21 7.2E-06 47.1 0.1 35 572-606 211-254 (256)
35 4gew_A 5'-tyrosyl-DNA phosphod 81.3 0.3 1E-05 51.3 0.0 40 103-145 116-159 (362)
36 2ei9_A Non-LTR retrotransposon 78.4 0.23 7.8E-06 49.1 -1.9 56 422-497 77-132 (240)
37 1ako_A Exonuclease III; AP-end 77.8 0.22 7.7E-06 47.8 -2.2 35 107-145 1-35 (268)
38 2jc5_A Exodeoxyribonuclease; h 77.6 0.24 8.1E-06 47.4 -2.1 36 107-145 2-37 (259)
39 3g91_A MTH0212, exodeoxyribonu 76.0 0.2 6.8E-06 48.9 -3.2 35 572-606 221-257 (265)
40 1vyb_A ORF2 contains A reverse 71.1 0.44 1.5E-05 44.8 -2.0 37 106-145 7-44 (238)
41 2voa_A AF_EXO, XTHA, exodeoxyr 69.6 0.56 1.9E-05 44.9 -1.6 35 107-145 2-36 (257)
42 2o3h_A DNA-(apurinic or apyrim 68.4 0.43 1.5E-05 46.8 -2.7 37 106-145 28-64 (285)
43 1hd7_A DNA-(apurinic or apyrim 66.9 0.5 1.7E-05 47.9 -2.7 37 106-145 61-97 (318)
44 2f1n_A CDT B, cytolethal diste 64.6 5.6 0.00019 40.8 4.5 59 422-495 130-188 (262)
45 3g6s_A Putative endonuclease/e 63.8 3.1 0.00011 40.2 2.4 36 106-145 3-47 (267)
46 2jc4_A Exodeoxyribonuclease II 63.4 0.61 2.1E-05 44.4 -2.7 34 108-145 2-35 (256)
47 2j63_A AP-endonuclease; base e 62.9 0.64 2.2E-05 51.0 -3.0 37 106-145 149-188 (467)
48 3l1w_A Uncharacterized protein 60.5 1.4 4.9E-05 42.2 -0.7 36 107-145 1-44 (257)
49 3teb_A Endonuclease/exonucleas 58.8 1.7 5.8E-05 41.6 -0.5 33 572-605 228-265 (266)
50 1wdu_A TRAS1 ORF2P; four-layer 57.8 0.84 2.9E-05 43.9 -2.9 36 106-145 19-54 (245)
51 2ddr_A Sphingomyelin phosphodi 57.4 7.2 0.00025 38.2 3.8 15 592-606 291-305 (306)
52 2f1n_A CDT B, cytolethal diste 54.7 2.8 9.5E-05 43.0 0.3 39 106-146 15-57 (262)
53 3mpr_A Putative endonuclease/e 51.2 2.1 7E-05 42.7 -1.4 40 104-145 4-52 (298)
54 1sr4_B CDT B, cytolethal diste 50.9 5.1 0.00017 41.0 1.5 39 107-148 5-48 (261)
55 1zwx_A SMCL, sphingomyelinase- 46.5 9.1 0.00031 37.5 2.5 15 592-606 286-300 (301)
56 3i41_A Beta-hemolysin; beta to 33.8 5.3 0.00018 40.5 -1.6 37 106-145 29-74 (317)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=3.1e-90 Score=723.53 Aligned_cols=229 Identities=41% Similarity=0.751 Sum_probs=216.4
Q ss_pred CEEEEEeeeceeEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHH
Q 006279 378 KYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRN 457 (652)
Q Consensus 378 ~Yv~v~S~qMvGi~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN 457 (652)
.|++|+|+|||||+|+||||+++.++|++|++++||||+||++||||||+|||.+++|+|||||||||||++ +.++||
T Consensus 78 ~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~--~~~~Rn 155 (313)
T 3mtc_A 78 KYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIE--EYERRN 155 (313)
T ss_dssp CEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGG--GHHHHH
T ss_pred CEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCch--HHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999999999999999986 478999
Q ss_pred hhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcccc-cChHHHHHHHhhcchHHHhhhhhhhHHHhcCCcccccc
Q 006279 458 SDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN-MMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWK 536 (652)
Q Consensus 458 ~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~-l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~ 536 (652)
+|+.+|++++.|........|.+|.+||+|||||||||||+ ++.++++++|+.++|+.||++|||+.|+++|++|.||.
T Consensus 156 ~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~ 235 (313)
T 3mtc_A 156 QDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFT 235 (313)
T ss_dssp HHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCB
T ss_pred HHHHHHHHhcccCCCCCccCCccccCCceEEEeccccccccCCCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCccCCcc
Confidence 99999999999975433345678999999999999999996 88999999999999999999999999999999999999
Q ss_pred ccCcCCCCCcccccCCccCCCCCCCCCCcccCCCcccceeeecCceeEEEeccC-CCCCCCCCCeeeEEEEEEEeeCH
Q 006279 537 EGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRA-EILLSDHRPVSSTFLVQVEVLDH 613 (652)
Q Consensus 537 Eg~I~FpPTYKy~~~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g~~i~~l~Y~s~-e~~~SDHrPV~A~F~v~v~vi~~ 613 (652)
|++|+|||||||+.|++.|++ ++|+|+|||||||||++++++++.|.+. ++++||||||+|.|.+++.|+-+
T Consensus 236 E~~I~F~PTYKyd~~s~~ydt-----s~k~R~PsWcDRIL~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~~~ 308 (313)
T 3mtc_A 236 EGELTFQPTYKYDTGSDDWDT-----SEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRVVAH 308 (313)
T ss_dssp CCCCCSCCCBCBCTTSSSBCC-----STTCCCCBCCEEEEEEESSEEEEEEEECTTCCSSSSCCEEEEEEEEEEEECC
T ss_pred cCCcCcCCCccCcCCCccccc-----ccCEecccccceEEEecCCeEEEeeeeccCccCCCccCeEEEEEEEEEEeec
Confidence 999999999999999999984 7899999999999999999999999985 79999999999999999998753
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=2.6e-85 Score=687.22 Aligned_cols=229 Identities=34% Similarity=0.578 Sum_probs=196.6
Q ss_pred CEEEEEeeeceeEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHH
Q 006279 378 KYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRN 457 (652)
Q Consensus 378 ~Yv~v~S~qMvGi~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN 457 (652)
.|++|+++|||||+|+||||+++.++|++|++++||||+||++||||||+|+|.+++|+|||||||||||+++ +++||
T Consensus 80 ~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~--~~~Rn 157 (316)
T 4a9c_A 80 DYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK--TARRN 157 (316)
T ss_dssp CCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred CEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchH--HHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999874 78999
Q ss_pred hhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcccccChHHHHHHHhhcchHHHhhhhhhhHHHhcCCccccccc
Q 006279 458 SDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKE 537 (652)
Q Consensus 458 ~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~E 537 (652)
+|+.+|++++.|.... ......+.+||||||||||||||+++.++++++|++++|+.||++|||+.|+++|++|.||+|
T Consensus 158 ~d~~~I~~~l~f~~~~-~~~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E 236 (316)
T 4a9c_A 158 QNYLDILRLLSLGDRQ-LNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSE 236 (316)
T ss_dssp HHHHHHHHHCCC--------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBC
T ss_pred HHHHHHHHhCCCCCCC-cCccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcccHHHHhccChHHHHHhcCCccccccc
Confidence 9999999999986321 111233467999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCCcccccCCc-cCCCCCC-CCCCcccCCCcccceeeecC---ceeEEEecc-CCCCCCCCCCeeeEEEEEEE
Q 006279 538 GVINFPPTYKYEINSD-RYVGENP-KEGEKKRSPAWCDRILWLGK---GIKQLAYTR-AEILLSDHRPVSSTFLVQVE 609 (652)
Q Consensus 538 g~I~FpPTYKy~~~Sd-~Y~~~~~-k~~~KkR~PSWCDRIL~~g~---~i~~l~Y~s-~e~~~SDHrPV~A~F~v~v~ 609 (652)
++|+|||||||+.|++ .|+++.. .+++|+|+|||||||||++. .++++.|.+ .++++||||||+|.|.+.|.
T Consensus 237 ~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 237 EEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp CCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred CCcccCCCccccCCCcccccccccccccccccCCcccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 9999999999999995 5765433 25678999999999999975 589999997 58999999999999999874
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=2.4e-83 Score=680.34 Aligned_cols=324 Identities=34% Similarity=0.620 Sum_probs=286.6
Q ss_pred CCCchhhH-hhhcccccccccccceeeeEEEEEeeeeCCCCCCCCCCCcccccCC--CCCCCEEEEeeeeeeeCCCCCcc
Q 006279 78 TPSKGYHL-RHRRGKSETLRVQYINTKDVRVTIGTWNVAGRQPYEDLDIDDWLCT--QEPADIYIFGFQEVVPLNAGNVL 154 (652)
Q Consensus 78 ~~~~~~~~-~~~r~~~e~~r~ey~~~~~~ri~vgTwNV~G~~p~~~ldl~~WL~~--~~~~DIYvlGfQEiV~Lna~nvl 154 (652)
||+++++. +|++|.+ +|+..++++||||||||||+.| +.||.+||.+ ..+||||||||||||+|++++++
T Consensus 2 ~p~~~~~~~~l~~r~~-----e~~~~~~~~i~v~TwNv~g~~~--~~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~ 74 (347)
T 1i9z_A 2 DPIHEYVNHELRKREN-----EFSEHKNVKIFVASYNLNGCSA--TTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVI 74 (347)
T ss_dssp CHHHHHHHHHHHHTGG-----GTEEEEEEEEEEEEEECTTCCC--CSCCHHHHSCSSSCCCSEEEEEEECSSCCC-----
T ss_pred CchHHHHHHHHHHHHH-----hcCCCCCcEEEEEeEecCCCCC--chhHHHHhccccCCCCCEEEEEeEEeecCchhhhc
Confidence 68888887 6777765 5999999999999999999888 4569999986 36899999999999999999999
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCcccccccCCCCCCCcCCCchhhhhhhhhhcccCCCccCcccccccccccCCCCCc
Q 006279 155 GAESSRPIPKWEAIIRRTLNKSAEPENKYKSYSAPPSPVLRTSSVADELADELADEIDDLPLGITSEEYASITNGCNVGR 234 (652)
Q Consensus 155 ~~ed~~~~~~W~~~I~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~ 234 (652)
+. |+.+...|+.+|+++|+...+
T Consensus 75 ~~-~~~~~~~w~~~i~~~L~~~~~-------------------------------------------------------- 97 (347)
T 1i9z_A 75 SA-DPAKRREWESCVKRLLNGKCT-------------------------------------------------------- 97 (347)
T ss_dssp CC-CHHHHHHHHHHHHHHHHHTCC--------------------------------------------------------
T ss_pred cc-CchhHHHHHHHHHHHHhhccc--------------------------------------------------------
Confidence 75 556688999999999874210
Q ss_pred ccchhhhccccccccccccccccCCCCCCCCCCCCCCchhhhhhhhhhhhccccccccccccCCCCCCCcccccccCCCc
Q 006279 235 EDLKKVISIGKNLHLSRIYGVDYDRRLDWPEHSFDATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAINGNGL 314 (652)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~~~p~~~~~~~~~~~~~~~ 314 (652)
T Consensus 98 -------------------------------------------------------------------------------- 97 (347)
T 1i9z_A 98 -------------------------------------------------------------------------------- 97 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccchhhccCCcccccccccCCCCCCcccccccCCCcccccchHHHHhhcCCCCCEEEEEeeeceeEEEEE
Q 006279 315 KRSHHSYGNLVSTWMEQQEEPEVVESVSDVSDGFSDEEFDAFSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGIYVSI 394 (652)
Q Consensus 315 ~~~~~s~~~~~s~~~~~~~~~~~~~s~~~~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~Yv~v~S~qMvGi~L~V 394 (652)
++..|+++.++||+|++|+|
T Consensus 98 ------------------------------------------------------------~~~~Y~~v~s~~l~g~~L~V 117 (347)
T 1i9z_A 98 ------------------------------------------------------------SGPGYVQLRSGQLVGTALMI 117 (347)
T ss_dssp ------------------------------------------------------------SSCCEEEEEEEEETTEEEEE
T ss_pred ------------------------------------------------------------CCCceeEEEEeeccceEEEE
Confidence 01369999999999999999
Q ss_pred EEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCC
Q 006279 395 WVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFD 474 (652)
Q Consensus 395 fVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~ 474 (652)
|||.+++++|++|++++|+||++|++||||+|+|+|.+++++||||||||+||+.+ ..+||+|+.+|++++.|..
T Consensus 118 fvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~--~~~R~~d~~~I~~~l~f~~--- 192 (347)
T 1i9z_A 118 FCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN--YDERDHDYRTIASGLRFRR--- 192 (347)
T ss_dssp EEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC--HHHHHHHHHHHHHHCCCGG---
T ss_pred EEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCcc--HHHHHHHHHHHHHhhccCc---
Confidence 99999999999999999999999999999999999999999999999999999865 4679999999999998863
Q ss_pred CCCCCCCCCcceEEEeCccCcccccChHHHHHHHhhcchHHHhhhhhhhHHHhcCCccccccccCcCCCCCcccccCCcc
Q 006279 475 TDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEINSDR 554 (652)
Q Consensus 475 ~~~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~ 554 (652)
+..|.+||+|||+|||||||+++.+.++++|++++|..||++|||+.++++|++|.||.|++|+|+|||||+.+++.
T Consensus 193 ---~~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~ 269 (347)
T 1i9z_A 193 ---GRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDI 269 (347)
T ss_dssp ---GCCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSC
T ss_pred ---ccccccCccEEEecccccccCCCHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCCcc
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCCCcccceeeecCceeEEEeccCCCCCCCCCCeeeEEEEEEEeeCHHHHhhh
Q 006279 555 YVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAEILLSDHRPVSSTFLVQVEVLDHRKLKRA 619 (652)
Q Consensus 555 Y~~~~~k~~~KkR~PSWCDRIL~~g~~i~~l~Y~s~e~~~SDHrPV~A~F~v~v~vi~~~kl~~~ 619 (652)
|++ ++|+|+|||||||||++ +++++.|.+.++++||||||+|.|.+.|+++++++.++.
T Consensus 270 yd~-----s~k~R~PsWcDRIL~~~-~l~~~~Y~~~~~~~SDH~PV~a~f~~~v~~~~~~~~~~~ 328 (347)
T 1i9z_A 270 YDT-----SDKHRVPAWTDRILYRG-ELVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKKKIL 328 (347)
T ss_dssp BCC-----STTCCCCBCCEEEEEES-SCEEEEEEECCCCSSSBCCEEEEEEEEEEEECHHHHHHH
T ss_pred ccc-----cccccCCcccceEEEeC-CEEEEEEEecCccCCCcCCceeEEEEEEecCCHHHHHHH
Confidence 984 78999999999999998 899999999889999999999999999999998886654
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=2e-77 Score=637.16 Aligned_cols=228 Identities=30% Similarity=0.537 Sum_probs=207.4
Q ss_pred CEEEEEeeeceeEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHH
Q 006279 378 KYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRN 457 (652)
Q Consensus 378 ~Yv~v~S~qMvGi~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN 457 (652)
.|+++.+.||+|++|+||||.++.++|+++++++|+||+||++||||+|+|+|.+++|+||||||||+||+++ ..+||
T Consensus 86 ~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~--~~~Rn 163 (357)
T 2xsw_A 86 HYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK--VAERL 163 (357)
T ss_dssp TEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred cccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCch--HHHHH
Confidence 4888999999999999999999999999999999999999999999999999999999999999999999864 68999
Q ss_pred hhHHHHHhhcccCCCCCCC------CCCCCCCcceEEEeCccCcccccChHHHHHHHh---hcchHHHhhhhhhhHHHhc
Q 006279 458 SDVSEIRRRTRFSSVFDTD------QPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVA---QKRWDKLINSDQLSKELHS 528 (652)
Q Consensus 458 ~D~~eIl~r~~F~~~~~~~------~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~---~~~~~~LL~~DQL~~e~~~ 528 (652)
+|+.+|++++.|+...... ....+.+||+|||+|||||||++++++++++|. .++|+.|+++|||+.++++
T Consensus 164 ~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~ 243 (357)
T 2xsw_A 164 LDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRK 243 (357)
T ss_dssp HHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCCHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccchHHHHHHHhhcchhhHHHHHhcChhHHHHhc
Confidence 9999999999996432111 112345799999999999999999999999996 4789999999999999999
Q ss_pred CCccccccccCcCCCCCcccccCCccCCCCCCCCCCcccCCCcccceeeecC---ceeEEEecc-CCCCCCCCCCeeeEE
Q 006279 529 GHVFEGWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGK---GIKQLAYTR-AEILLSDHRPVSSTF 604 (652)
Q Consensus 529 g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g~---~i~~l~Y~s-~e~~~SDHrPV~A~F 604 (652)
|++|.||+|++|+|||||||+.|++.|++ ++|+|+|||||||||++. +++++.|.+ .++++||||||+|.|
T Consensus 244 g~~F~gf~E~~I~F~PTYKy~~~t~~Ydt-----s~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f 318 (357)
T 2xsw_A 244 GSIFKGFQEPDIHFLPSYKFDIGKDTYDS-----TSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLF 318 (357)
T ss_dssp TSSSTTCBCCCCCSCCCBCBCTTSSSBCC-----STTCCCCBCCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEE
T ss_pred cccccCccccCCCCCCCccccCCCccccc-----cCCCCCCcccceEEEecCCCCceEEEEeEecccccCCCcCCceeEE
Confidence 99999999999999999999999999984 689999999999999964 699999999 589999999999999
Q ss_pred EEEEEeeC
Q 006279 605 LVQVEVLD 612 (652)
Q Consensus 605 ~v~v~vi~ 612 (652)
.+.|+...
T Consensus 319 ~v~v~~~~ 326 (357)
T 2xsw_A 319 RVKVRPGR 326 (357)
T ss_dssp EEECCCCC
T ss_pred EEEEecCC
Confidence 99986654
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=6.1e-63 Score=507.49 Aligned_cols=205 Identities=26% Similarity=0.490 Sum_probs=185.2
Q ss_pred CEEEEEe--eeceeEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCeEEEEecccCCCCCCChhHHH
Q 006279 378 KYVRIVS--KQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQR 455 (652)
Q Consensus 378 ~Yv~v~S--~qMvGi~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~r 455 (652)
.|+++.+ .+|+|++|+||+|.++.++|+++.+ +|++|.+||||+|+++|.+++++||||||||+++..+ ..+
T Consensus 72 ~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~--~~~ 145 (282)
T 2imq_X 72 GYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVT--STN 145 (282)
T ss_dssp TEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCC--TTS
T ss_pred ceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCch--HHH
Confidence 3666666 7899999999999999999888765 5678899999999999999999999999999999543 467
Q ss_pred HHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcccccChHHHHHHHhhcchHHHhhhhhhhHHHhcCCccccc
Q 006279 456 RNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGW 535 (652)
Q Consensus 456 RN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf 535 (652)
|++|+..|++++.+ +.++++|||+||||||++.+.++++++|++++|..|+++|||..+++ |.+|.||
T Consensus 146 R~~~~~~I~~~~~~-----------~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~f 213 (282)
T 2imq_X 146 TKYAYDTRLDYSKK-----------DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKE-QKLFDGW 213 (282)
T ss_dssp SSSSCCGGGCTTSS-----------SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTSSTTC
T ss_pred HHHHHHHHHHhhhc-----------cCccceEEEecccccccCCCHHHHHHHHhhccHHHHhhhhHHHHhhc-ccccccc
Confidence 99999999876543 35688999999999999999999999999999999999999999999 9999999
Q ss_pred cccCcCCCCCcccccCCccCCCCCCCCCCcccCCCcccceeeec---CceeEEEeccC-CCCCCCCCCeeeEEEEEE
Q 006279 536 KEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLG---KGIKQLAYTRA-EILLSDHRPVSSTFLVQV 608 (652)
Q Consensus 536 ~Eg~I~FpPTYKy~~~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g---~~i~~l~Y~s~-e~~~SDHrPV~A~F~v~v 608 (652)
.|++|+|+|||||+.+++.|++ +|+|||||||||++ .+++++.|.+. ++.+|||+||+|.|.+++
T Consensus 214 ~e~~i~f~PTYk~~~~~~~y~~--------~R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 214 TEPQVTFKPTYKFKPNTDEYDL--------SATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp BCCCCCSCCCBCBCTTSSCBCT--------TSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred ccCCcCCCCCccccCCCccccc--------cCCccccceEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 9999999999999999999974 79999999999996 47999999997 799999999999998764
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=98.87 E-value=2.6e-08 Score=95.30 Aligned_cols=66 Identities=21% Similarity=0.360 Sum_probs=48.9
Q ss_pred cccCCceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcc
Q 006279 418 GYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (652)
Q Consensus 418 G~lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (652)
+....++.+.+.+.+.+..|+++|+||.++... ...|..++..|++.+.- ......||++||||..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~l~~-----------~~~~~pvIl~GDfN~~ 162 (256)
T 4gz1_A 97 NTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH--SAERIRQLKTVLGKMQE-----------APDSTTVIFAGDTNLR 162 (256)
T ss_dssp TCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHH-----------SCTTSEEEEEEECCCC
T ss_pred cccccceEEEEEEEeCCEEEEEEeecccccccc--hhhhhHHHHHHhhhhhh-----------ccCcceEEEeCccCCC
Confidence 445668889999999999999999999987543 35567777777765421 1123479999999973
No 7
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=98.68 E-value=1.5e-07 Score=91.70 Aligned_cols=62 Identities=15% Similarity=0.265 Sum_probs=48.2
Q ss_pred cCCceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006279 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (652)
Q Consensus 420 lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (652)
...+|++.+.+.+.+..|+++|+||.+.... ...|..++..|++.+. ....+|++||||-.-
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~r~~q~~~l~~~~~--------------~~~~~il~GDfN~~~ 181 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCE--TEDMGKNIQTILNRTQ--------------NSNLKILMGDFNTDA 181 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCT--TCCHHHHHHHHHTSSC--------------SCCEEEEEEECCCCT
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCC--hHHHHHHHHHHHHHHh--------------cCCcEEEEeECCCCC
Confidence 4568999999999999999999999987432 2357788888876432 135899999999854
No 8
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.65 E-value=1.3e-07 Score=94.57 Aligned_cols=70 Identities=23% Similarity=0.296 Sum_probs=50.3
Q ss_pred cCCceEEEEEEEEcCeEEEEecccCCCCCCC----hhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCc
Q 006279 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKD----GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (652)
Q Consensus 420 lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~----~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (652)
..++|++.+.+.+.+..|+++|+||.++... .....|..++..|.+.+.=. . +.....+|++||||-
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~----~~~~~pvIl~GDfN~ 198 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKK-----N----IPKDEIIFIGGDLNV 198 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-----T----CCTTSEEEEEEECCC
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHh-----C----CCCCCeEEEEeeCCC
Confidence 4578999999999999999999999987432 13456888888776643200 0 112358999999998
Q ss_pred ccc
Q 006279 496 RLN 498 (652)
Q Consensus 496 RI~ 498 (652)
.-.
T Consensus 199 ~~~ 201 (301)
T 1zwx_A 199 NYG 201 (301)
T ss_dssp CTT
T ss_pred CCC
Confidence 543
No 9
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=98.65 E-value=2.5e-07 Score=88.66 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=45.1
Q ss_pred cCCceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcc
Q 006279 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (652)
Q Consensus 420 lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (652)
.+..+.+.+.+.+.+..|.++|+||.+.... ...|..++..++..+..... ......+|++||||.+
T Consensus 103 ~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~~~~~~~--------~~~~~~vIl~GDfN~~ 169 (256)
T 4fva_A 103 GMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCAQFGFCMDKVREIIA--------QNPGALVFFGGDLNLR 169 (256)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHHHHHHH--------HSTTCEEEEEEECCCC
T ss_pred cccceeEEEEEEeCCeEEEEEEecCCCCCcc--hHHHHHHHHHHHHHhhhhhh--------ccCCCcEEEeccCCCC
Confidence 4567888899999999999999999987543 34555566555543211000 0113479999999974
No 10
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=98.54 E-value=1.3e-06 Score=81.78 Aligned_cols=62 Identities=21% Similarity=0.334 Sum_probs=45.9
Q ss_pred CCceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCc
Q 006279 421 GNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (652)
Q Consensus 421 GNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (652)
...+.+.+.+.+.+..|.++++||.+.... ...|..++.+|++.+.= ......+|++||||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~--~~~r~~q~~~~~~~l~~-----------~~~~~pvIl~GDfN~ 155 (250)
T 4f1h_A 94 MMRNLLIAQVTFSGQKLYLMTSHLESCKNQ--SQERTKQLRVVLQKIKE-----------APEDAIVIFAGDTNL 155 (250)
T ss_dssp SCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHH-----------SCTTEEEEEEEECCC
T ss_pred ccceEEEEEEecCCcEEEEecccccccccc--HHHHHHHHHHHHHHHHh-----------cCCCCCEEEEEecCC
Confidence 346778888889999999999999987543 45677788888765421 012347999999996
No 11
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.49 E-value=1.3e-06 Score=85.32 Aligned_cols=138 Identities=17% Similarity=0.120 Sum_probs=80.1
Q ss_pred cCCceEEEEEEEEc--CeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006279 420 MGNKGSVSVSMTLF--QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (652)
Q Consensus 420 lGNKGaVsVs~~l~--~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (652)
...++++.+.+... +..|+++|+||.+.. ...|..++..|++.+.= . +.. +++|++||||-
T Consensus 107 ~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q~~~l~~~i~~-~---------~~~-~pvil~GDfN~-- 169 (257)
T 3l1w_A 107 GCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAGMTVILEELHD-K---------IAQ-YPTLLMGDFNA-- 169 (257)
T ss_dssp SSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHHHHHHHHHTHH-H---------HHH-SCEEEEEECCC--
T ss_pred cccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH-H---------cCC-CCEEEEeeCCC--
Confidence 45788899999884 678999999999863 35688888888765430 0 001 26999999997
Q ss_pred ccChHHHHHHHhhcchHHHhhhhhhhHHHhcCCccccccccC-cCCCCCcccccCCccCCCCCCCCCCcccCCCccccee
Q 006279 498 NMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGV-INFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRIL 576 (652)
Q Consensus 498 ~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~-I~FpPTYKy~~~Sd~Y~~~~~k~~~KkR~PSWCDRIL 576 (652)
.+.+.+..++..+ |. .-|.... -...+||.-..+. .| .-.+.-.|+||
T Consensus 170 -~~~~~~~~~l~~~-l~------------------d~~~~~~~~~~~~t~~~~~~~------~~-----~~~~~riD~i~ 218 (257)
T 3l1w_A 170 -ESGEEVHQLVQKK-FQ------------------DSKNLATHYGPRGTFQNFTYT------KP-----WAELEEIDYIY 218 (257)
T ss_dssp -CTTSHHHHHHTTT-CE------------------EGGGTSEEESCSCCBCTTCTT------CC-----GGGCBCCEEEE
T ss_pred -CCCcHHHHHhhhh-cc------------------chhhhhcccCCCCcccCCccc------CC-----CCCCCceeEEE
Confidence 3333333344321 10 0111110 0122333211000 00 00112279999
Q ss_pred eecCceeEEEeccC-----CCCCCCCCCeeeEEEEE
Q 006279 577 WLGKGIKQLAYTRA-----EILLSDHRPVSSTFLVQ 607 (652)
Q Consensus 577 ~~g~~i~~l~Y~s~-----e~~~SDHrPV~A~F~v~ 607 (652)
. .+++...+... ....|||.||.+.|.+.
T Consensus 219 ~--~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~~~ 252 (257)
T 3l1w_A 219 V--KGWQVQQTASLTDSIDGRFPSDHFPLEAEVAGE 252 (257)
T ss_dssp E--ESEEEEEEEECCCCBTTBCSSSBCCEEEEEEEC
T ss_pred E--CCcEEEEEEEeccCcCCcccCCcceEEEEEEEE
Confidence 9 56776666542 24689999999998764
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.42 E-value=1.8e-06 Score=91.20 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=45.9
Q ss_pred CCceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcc
Q 006279 421 GNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (652)
Q Consensus 421 GNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (652)
...+++.+.+.+.+..|+++|+||.++.. ....|..++..++..+.-... ......||++||||-+
T Consensus 210 ~~r~~l~~~i~~~g~~l~v~ntHL~s~~~--~~~~R~~Q~~~l~~~~~~~~~--------~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 210 MYRTLQILEGSIGGLKVFLLNTHLESTRE--HRPQRCAQFGFCMDKVREIIA--------QNPGALVFFGGDLNLR 275 (362)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEECCCSGG--GHHHHHHHHHHHHHHHHHHHH--------HCTTCEEEEEEECCCC
T ss_pred ccceEEEEEEEECCEEEEEEEecCCcccc--chhHHHHHHHHHHHHhHhhhh--------cCCCCCeEEeecCCCC
Confidence 34678889999999999999999998753 245677777776654221000 0112479999999964
No 13
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.42 E-value=8.8e-07 Score=87.14 Aligned_cols=139 Identities=14% Similarity=0.092 Sum_probs=79.4
Q ss_pred cCCceEEEEEEEE--cCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006279 420 MGNKGSVSVSMTL--FQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (652)
Q Consensus 420 lGNKGaVsVs~~l--~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (652)
..+++++.+.+.. .+..|+++|+||.+.. ...|..++..|++.+.= . .....+|++||||-
T Consensus 113 ~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~~--~---------~~~~pvIl~GDfN~-- 175 (267)
T 3g6s_A 113 VCVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIKE--I---------VGERPAVVTGDFNV-- 175 (267)
T ss_dssp SSCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHH--H---------TTTSCEEEEEECSS--
T ss_pred cCcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH--h---------cCCCCEEEEeECCC--
Confidence 3467888888885 5779999999998753 35677777777654320 0 01247999999997
Q ss_pred ccChHHHHHHHhhcc--hHHHhhhhhhhHHHhcCCccccccccCcCC--CCCcccccCCccCCCCCCCCCCcccCCCccc
Q 006279 498 NMMDTEVRELVAQKR--WDKLINSDQLSKELHSGHVFEGWKEGVINF--PPTYKYEINSDRYVGENPKEGEKKRSPAWCD 573 (652)
Q Consensus 498 ~l~~~~v~~lI~~~~--~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~F--pPTYKy~~~Sd~Y~~~~~k~~~KkR~PSWCD 573 (652)
.+.+.+...+.... |. ..|.+....+ .+||....... ...+.-.|
T Consensus 176 -~~~~~~~~~l~~~~~~l~------------------d~~~~~~~~~~~~~T~~~~~~~~------------~~~~~riD 224 (267)
T 3g6s_A 176 -TDASDAYETITTNEFVMK------------------DAYKTAARVTGVDYTFHDFARIP------------AEDCEKID 224 (267)
T ss_dssp -CTTSHHHHHHHSSSSCCE------------------EHHHHCSEEEECSCSBCTTTTSC------------GGGCCCCE
T ss_pred -CCCCHHHHHhhcCCcchh------------------hhHhhhccccCCCCCEeCCCCCC------------CCCCCcEe
Confidence 33333333332211 11 1121211111 24444321100 01112389
Q ss_pred ceeeecCceeEEEeccCCC----CCCCCCCeeeEEEEE
Q 006279 574 RILWLGKGIKQLAYTRAEI----LLSDHRPVSSTFLVQ 607 (652)
Q Consensus 574 RIL~~g~~i~~l~Y~s~e~----~~SDHrPV~A~F~v~ 607 (652)
+||..+ +++...+..... ..|||.||.|.....
T Consensus 225 ~I~~s~-~~~~~~~~v~~~~~~~~~SDH~PV~a~~~~~ 261 (267)
T 3g6s_A 225 FIFVTP-QVLVKSCEIPAEVPEALLSDHNPQLADLELE 261 (267)
T ss_dssp EEEECT-TSEEEEEEECCCCSSSCCCSBCCEEEEEEEC
T ss_pred EEEeCC-CceEEEEEEecCCCCCCCCCcccEEEEEEec
Confidence 999986 366666664322 579999999987653
No 14
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.42 E-value=7.4e-07 Score=91.65 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=51.7
Q ss_pred ccCCceEEEEEEEEcCeEEEEecccCCCCCCC----hhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccC
Q 006279 419 YMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKD----GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLN 494 (652)
Q Consensus 419 ~lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~----~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLN 494 (652)
...+||.+.+.+.+.+..|.++|+||.+.... .....|..++..|.+.+.=. . +.....||++||||
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~----~~~~~pvIl~GDfN 216 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK-----N----IPKDETVYIGGDLN 216 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH-----T----CCTTSCEEEEEECC
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh-----c----cCCCCeEEEEeECC
Confidence 36789999999999999999999999986521 23567888888887653210 0 11234799999999
Q ss_pred ccc
Q 006279 495 YRL 497 (652)
Q Consensus 495 YRI 497 (652)
-.-
T Consensus 217 ~~~ 219 (317)
T 3i41_A 217 VNK 219 (317)
T ss_dssp CCT
T ss_pred CCC
Confidence 854
No 15
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.41 E-value=1.5e-06 Score=84.64 Aligned_cols=68 Identities=6% Similarity=0.164 Sum_probs=46.0
Q ss_pred CCceEEEEEEEEcCeEEEEecccCCCCCCCh---hHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006279 421 GNKGSVSVSMTLFQSRLCLVCSHLTSGQKDG---AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (652)
Q Consensus 421 GNKGaVsVs~~l~~ts~cFVn~HLaAg~k~~---~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (652)
.+++++.+.+.+.+..|+++|+||.++.... ....|...+.+|...+.- . ......+|++||||-..
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~--~--------~~~~~~~Il~GDFN~~~ 156 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLET--E--------LKRDNPVLIMGDMNISP 156 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHH--H--------CCTTSCEEEEEECCCCC
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHH--h--------hhCCCCEEEEeECCCCC
Confidence 4578899999998889999999999876321 223466666666543220 0 01234799999999754
Q ss_pred c
Q 006279 498 N 498 (652)
Q Consensus 498 ~ 498 (652)
+
T Consensus 157 ~ 157 (268)
T 1ako_A 157 T 157 (268)
T ss_dssp S
T ss_pred c
Confidence 3
No 16
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.37 E-value=1.5e-06 Score=86.94 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=48.4
Q ss_pred cCCceEEEEEEEEcCeEEEEecccCCCCCCC----hhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCc
Q 006279 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKD----GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (652)
Q Consensus 420 lGNKGaVsVs~~l~~ts~cFVn~HLaAg~k~----~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (652)
..++|++.+.+.+.+..|.++|+||.+.... .....|..++.+|.+.+.=. . +.....+|++||||-
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~----~~~~~pvil~GDfN~ 198 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNK-----N----IPNNEYVLIGGDMNV 198 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHH-----T----CCTTSCEEEEEECCC
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----c----CCCCCEEEEEeeCCC
Confidence 3578999999999999999999999987421 13456788888776543210 0 112347999999998
Q ss_pred cc
Q 006279 496 RL 497 (652)
Q Consensus 496 RI 497 (652)
.-
T Consensus 199 ~~ 200 (306)
T 2ddr_A 199 NK 200 (306)
T ss_dssp CC
T ss_pred Cc
Confidence 55
No 17
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=1e-05 Score=81.79 Aligned_cols=62 Identities=8% Similarity=-0.036 Sum_probs=42.0
Q ss_pred CCceEEEEEEEE--cCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCc
Q 006279 421 GNKGSVSVSMTL--FQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (652)
Q Consensus 421 GNKGaVsVs~~l--~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (652)
-+++++.+.|.. .+..|+++|+||.+.. ...|..++..|++.+.= .... ....+|++||||-
T Consensus 118 ~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~~--~~~~-------~~~pvIl~GDfN~ 181 (298)
T 3mpr_A 118 LPRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMKE--LGRG-------KNLPAILTGDFNV 181 (298)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHH--TTTT-------SCCCEEEEEECSS
T ss_pred cCceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHHH--HhcC-------CCCcEEEEEeCCC
Confidence 356777777773 5778999999998642 35677788777665321 0000 1247999999996
No 18
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=97.65 E-value=0.00014 Score=70.13 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=31.4
Q ss_pred EEEEecccCCCCCCCh--hHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcccc
Q 006279 436 RLCLVCSHLTSGQKDG--AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN 498 (652)
Q Consensus 436 s~cFVn~HLaAg~k~~--~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~ 498 (652)
.|+++|+||.++...+ ....|...+..|.+.+.- . +.....+|++||||-...
T Consensus 98 ~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~--~--------~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 98 GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRD--E--------MTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHH--H--------HTTCSSEEEEEECCCCCS
T ss_pred CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHH--H--------hcCCCCEEEEeECCCCCc
Confidence 6999999999876422 223354445554432210 0 001247999999998544
No 19
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=97.61 E-value=0.00057 Score=64.94 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=35.4
Q ss_pred EEEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006279 425 SVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (652)
Q Consensus 425 aVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (652)
.+.+.+.+.+..|.++|+|++++.. . | -+.++++.+. . . ....+|++||||-..
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~----~-~--~~~~l~~~l~--~-----~-----~~~~~Il~GDFN~~~ 150 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGA----P-R--FIKQVLSDLQ--R-----D-----LDSHTLIMGDFNTPL 150 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSH----H-H--HHHHHHHHTT--T-----T-----CCTTEEEEEECSSCS
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCc----H-H--HHHHHHHHHH--h-----c-----cCCCEEEEccCCCCC
Confidence 5667777888999999999998642 1 1 1333444322 0 0 124799999999843
No 20
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=97.36 E-value=0.00045 Score=67.29 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=40.2
Q ss_pred CceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcc
Q 006279 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (652)
Q Consensus 422 NKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (652)
..|.+.+.+.+.+..|.++|+|++.+.. ...+...+..+++.+ ....+|++||||-.
T Consensus 102 ~~~~~~~~i~~~~~~~~v~~vy~p~~~~---~~~~~~~l~~~~~~~---------------~~~~~Ii~GDfN~~ 158 (245)
T 1wdu_A 102 TNNIVVVGIRTRAWEITLVSYYFEPDKP---IESYLEQIKRVERKM---------------GPKRLIFGGDANAK 158 (245)
T ss_dssp CSSEEEEEEECSSCEEEEEEEECCTTSC---SHHHHHHHHHHHHTT---------------CSSSEEEEEECCCC
T ss_pred cCCEEEEEEEcCCCcEEEEEEEeCCCCC---HHHHHHHHHHHHHHh---------------CCCcEEEEeccccC
Confidence 4677888888888889999999998753 123444566665431 11369999999964
No 21
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=97.30 E-value=0.00036 Score=69.12 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=22.8
Q ss_pred ccceeeecCce-eEEEecc-CCCCCCCCCCeeeEEE
Q 006279 572 CDRILWLGKGI-KQLAYTR-AEILLSDHRPVSSTFL 605 (652)
Q Consensus 572 CDRIL~~g~~i-~~l~Y~s-~e~~~SDHrPV~A~F~ 605 (652)
.|+||..+.-. +...+.. .+...|||.||.+.|.
T Consensus 249 ID~i~~s~~~~~~v~~~~v~~~~~~SDH~pv~~~l~ 284 (285)
T 2o3h_A 249 LDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 284 (285)
T ss_dssp CEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhhheEeeccCCCCCeecEEEEec
Confidence 89999976321 1333332 2456899999999885
No 22
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=97.20 E-value=0.00025 Score=68.49 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=24.4
Q ss_pred ccceeeecCce-eEEEeccC-CCCCCCCCCeeeEEEEE
Q 006279 572 CDRILWLGKGI-KQLAYTRA-EILLSDHRPVSSTFLVQ 607 (652)
Q Consensus 572 CDRIL~~g~~i-~~l~Y~s~-e~~~SDHrPV~A~F~v~ 607 (652)
.|+||..+.-. +...+... +...|||.||.+.|.+.
T Consensus 220 ID~i~~s~~~~~~~~~~~v~~~~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 220 IDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDYA 257 (259)
T ss_dssp CEEEEECHHHHTTEEEEEECCSSCCSSBCCEEEEESCC
T ss_pred EEEEEECHHHHhHHhheeecCCCCCCCcccEEEEEecc
Confidence 89999985311 13333332 57899999999998653
No 23
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=97.18 E-value=0.00067 Score=69.23 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=31.2
Q ss_pred eEEEEecccCCCCCCCh-hHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006279 435 SRLCLVCSHLTSGQKDG-AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (652)
Q Consensus 435 ts~cFVn~HLaAg~k~~-~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (652)
..|.++|+||.++.... ....|.+.+..|...+.- +.....+|++||||-..
T Consensus 163 ~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~-----------~~~~~pvIl~GDFN~~~ 215 (318)
T 1hd7_A 163 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG-----------LASRKPLVLCGDLNVAH 215 (318)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHH-----------HHHHSCEEEEEECSCCC
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHh-----------cccCCCEEEEeeCCCCC
Confidence 47999999998765321 123455555555543210 00114799999999643
No 24
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=97.05 E-value=0.00028 Score=69.74 Aligned_cols=60 Identities=10% Similarity=0.173 Sum_probs=35.1
Q ss_pred ceEEEEEEEEc---CeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006279 423 KGSVSVSMTLF---QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (652)
Q Consensus 423 KGaVsVs~~l~---~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (652)
.+.+.+.|... +..|.+||+||.+... .++-+.+.+++..+. .. .....+|++||||-.-
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~----~~q~~~l~~~~~~~~--~~---------~~~~~vil~GDfN~~~ 173 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSDA----VAEINSLYDVYLDVQ--QK---------WHLNDVMLMGDFNADC 173 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGGH----HHHHHHHHHHHHHHH--HH---------HCCCCEEEEEECCCST
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCCc----HHHHHHHHHHHHHHH--Hh---------CCCCCEEEEecCCCCC
Confidence 55667777765 5689999999997532 111222333332210 00 0123799999999743
No 25
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.99 E-value=0.00015 Score=83.22 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred CeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcc-cCCCCCCCCCCCCCCcceEEEeCccCcccccChHHHHHHHhhc
Q 006279 434 QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTR-FSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQK 511 (652)
Q Consensus 434 ~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~-F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~~ 511 (652)
+..|+++|+||.+.... ...|...+..|++.+. +........+..-....+||++||||- .+.+.+.+++..+
T Consensus 546 g~~l~V~ntHL~~~p~~--~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs---~P~s~~~~~l~~~ 619 (727)
T 4b8c_D 546 GDTIWAVTTHLHWDPKF--NDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNS---YINSAVYELINTG 619 (727)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CceEEEEEeccccCCCC--CchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCC---CCCCcceEeeecC
Confidence 66899999999986432 2346666666554432 100000000000011337999999997 4555555555443
No 26
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=96.69 E-value=0.0044 Score=68.14 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=23.2
Q ss_pred ccceeeecCce-eEEEecc-CCCCCCCCCCeeeEEEE
Q 006279 572 CDRILWLGKGI-KQLAYTR-AEILLSDHRPVSSTFLV 606 (652)
Q Consensus 572 CDRIL~~g~~i-~~l~Y~s-~e~~~SDHrPV~A~F~v 606 (652)
.|+||....-. +...+.- .+...|||.||.+.|.+
T Consensus 430 IDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 430 LDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred eEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEEEc
Confidence 79999876321 1233322 34679999999998853
No 27
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=96.41 E-value=0.0088 Score=57.72 Aligned_cols=34 Identities=24% Similarity=0.124 Sum_probs=21.4
Q ss_pred ccceeeecCce-eEEEeccC-----CCCCCCCCCeeeEEE
Q 006279 572 CDRILWLGKGI-KQLAYTRA-----EILLSDHRPVSSTFL 605 (652)
Q Consensus 572 CDRIL~~g~~i-~~l~Y~s~-----e~~~SDHrPV~A~F~ 605 (652)
.|+||..+.-. +...+... ....|||.||.+.|.
T Consensus 217 ID~i~~s~~~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~ 256 (257)
T 2voa_A 217 GDAILATPPLAERCVDCYADIKPRLAEKPSDHLPLVAVFD 256 (257)
T ss_dssp CEEEEECHHHHTTEEEEEECCHHHHSSSCCSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhheeEeehhhccCCCCCCccCEEEEEe
Confidence 89999975211 12222211 146899999999875
No 28
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=96.34 E-value=0.003 Score=62.02 Aligned_cols=36 Identities=31% Similarity=0.587 Sum_probs=24.1
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006279 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 107 i~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
+.|.||||+|........|..||.. ..||| |+|||+
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~-~~~DI--v~LQEt 39 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME-EKPDI--LCLQEI 39 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH-HCCSE--EEEECC
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh-cCCCE--EEEEec
Confidence 5688999999432222247788854 34686 788997
No 29
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=95.92 E-value=0.016 Score=59.37 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=37.1
Q ss_pred CceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCc
Q 006279 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (652)
Q Consensus 422 NKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (652)
..|.+.|+ +.+ +.|++.||.+... ..|.+.+..|... |... ...|. ..|...|++||||-
T Consensus 121 ~R~~l~i~--i~g--~~f~s~Hl~~~~~----~ea~~~v~~I~~~--~~~~--~~~~~--~~~~~~ii~GDFN~ 180 (261)
T 1sr4_B 121 SRPAVGIR--IGT--DVFFTVHALATGG----SDAVSLIRNIFTT--FNSS--SSPPE--RRVYSWMVVGDFNR 180 (261)
T ss_dssp CCCEEEEE--ETT--EEEEEEECCTTTT----TTHHHHHHHHHHH--HHC-----CGG--GGGCEEEEEEECSS
T ss_pred CcceEEEE--ECC--eEEEEeCCCCCCC----chHHHHHHHHHHH--HHhc--ccCCc--ccCCcEEEEeeCCC
Confidence 67888774 666 9999999999752 1245556666553 2110 00010 02358999999995
No 30
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=95.68 E-value=0.031 Score=60.25 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=45.1
Q ss_pred CeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcc-cCCCCCCCCCC--CCCCcceEEEeCccCcccccChHHHHHHHhh
Q 006279 434 QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTR-FSSVFDTDQPQ--TIPSHDQIFWFGDLNYRLNMMDTEVRELVAQ 510 (652)
Q Consensus 434 ~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~-F~~~~~~~~p~--~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~ 510 (652)
+..||++|+||..+... ...|..++..|++.+. |........+. .-...-+||++||||- .+.+.+-+++.+
T Consensus 194 ~~~l~V~nTHL~~~p~~--~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs---~P~s~vy~~L~~ 268 (398)
T 3ngq_A 194 KQLLIVANAHMHWDPEY--SDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNS---LPDSGVVEYLSN 268 (398)
T ss_dssp CCEEEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSC---CTTSHHHHHHHH
T ss_pred CcEEEEEEeCcCCCCCC--HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCC---CCCCHHHHHHhc
Confidence 46799999999997543 3467778777776532 21100000000 0001237999999998 778888888876
Q ss_pred cc
Q 006279 511 KR 512 (652)
Q Consensus 511 ~~ 512 (652)
+.
T Consensus 269 G~ 270 (398)
T 3ngq_A 269 GG 270 (398)
T ss_dssp TE
T ss_pred CC
Confidence 54
No 31
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=94.93 E-value=0.078 Score=52.46 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=25.6
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006279 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 106 ri~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
.+.|.||||||..-..+. |.+||.. ..||| |++||+
T Consensus 7 ~mki~s~Nvn~~r~~~~~-l~~~l~~-~~~DI--l~LQEt 42 (240)
T 2ei9_A 7 RLRIGQINLGGAEDATRE-LPSIARD-LGLDI--VLVQEQ 42 (240)
T ss_dssp EEEEEEEECTTCHHHHHT-HHHHHHH-HTCSE--EEEESC
T ss_pred cceEEEEecCccHHHHHH-HHHHHHH-cCCCE--EEeecc
Confidence 377899999995433333 7888855 34587 778997
No 32
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=90.68 E-value=0.038 Score=52.42 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=24.9
Q ss_pred eEEEEEeeeeCCCCCCCCCC----CcccccCCCCCCCEEEEeeeee
Q 006279 104 DVRVTIGTWNVAGRQPYEDL----DIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 104 ~~ri~vgTwNV~G~~p~~~l----dl~~WL~~~~~~DIYvlGfQEi 145 (652)
...+.|-||||+|..+.... -|.+||.. ..||| |+|||+
T Consensus 11 ~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~-~~pDI--i~LQEv 53 (256)
T 4fva_A 11 GFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN-VNPDI--LFLQEV 53 (256)
T ss_dssp TCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred CCEEEEEEEecCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEec
Confidence 35788999999985332110 13455533 35795 899998
No 33
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=87.05 E-value=0.1 Score=48.25 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=23.2
Q ss_pred EEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006279 106 RVTIGTWNVAGRQPYED----LDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 106 ri~vgTwNV~G~~p~~~----ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
++.|-||||+|..+... ..|.+||.. ..||| |+|||+
T Consensus 3 ~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~-~~pDI--i~LQEv 43 (250)
T 4f1h_A 3 KLSIISWNVDGLDTLNLADRARGLCSYLAL-YTPDV--VFLQEL 43 (250)
T ss_dssp CEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred eEEEEEEEeCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEeC
Confidence 46778999998533211 114455533 35795 889998
No 34
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=84.16 E-value=0.21 Score=47.10 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=24.0
Q ss_pred ccceeeecC--ceeEEEec-----c--CCCCCCCCCCeeeEEEE
Q 006279 572 CDRILWLGK--GIKQLAYT-----R--AEILLSDHRPVSSTFLV 606 (652)
Q Consensus 572 CDRIL~~g~--~i~~l~Y~-----s--~e~~~SDHrPV~A~F~v 606 (652)
.|+||+++. .+....+. . .....|||.||.|.|.+
T Consensus 211 iD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 211 FDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp CEEEEEECC-CSEEEEEEEEECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred EEEEEEECCccceeeeEEEEEeccccCCCCCCCccccEEEEEEE
Confidence 799999864 23333332 2 23446999999999976
No 35
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=81.25 E-value=0.3 Score=51.26 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=26.3
Q ss_pred eeEEEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006279 103 KDVRVTIGTWNVAGRQPYED----LDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 103 ~~~ri~vgTwNV~G~~p~~~----ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
+..++.|-||||+|...... .-|.+||.. ..||| |+|||+
T Consensus 116 ~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~-~~PDI--V~LQEv 159 (362)
T 4gew_A 116 KGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN-VNPDI--LFLQEV 159 (362)
T ss_dssp TTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred CCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEcC
Confidence 45678889999999532111 014567643 45696 899998
No 36
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=78.39 E-value=0.23 Score=49.07 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=35.4
Q ss_pred CceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006279 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (652)
Q Consensus 422 NKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (652)
..|++.|.+.+ ..+.+||+|++.+... ..+.+.+..++..+. ...+|++||||---
T Consensus 77 ~~~~~~i~i~~--~~i~i~svY~P~~~~~---~~~~~~l~~l~~~~~---------------~~~~Ii~GDfN~~~ 132 (240)
T 2ei9_A 77 STHITVVHIGG--WDLYMVSAYFQYSDPI---DPYLHRLGNILDRLR---------------GARVVICADTNAHS 132 (240)
T ss_dssp CSSEEEEEETT--TTEEEEEEECCTTSCS---HHHHHHHHHHHHHTT---------------TSCEEEEEECCCCC
T ss_pred CCCEEEEEEee--ccEEEEEEEcCCCCch---hHHHHHHHHHHHhcC---------------CCcEEEEEeccccc
Confidence 46776766543 5689999999998642 223334444433210 12699999999643
No 37
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=77.75 E-value=0.22 Score=47.84 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=22.5
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006279 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 107 i~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
+.|.||||+|.... -..|.+||.. ..||| |||||+
T Consensus 1 lrv~t~Nv~~~~~~-~~~i~~~i~~-~~~Di--i~LQE~ 35 (268)
T 1ako_A 1 MKFVSFNINGLRAR-PHQLEAIVEK-HQPDV--IGLQET 35 (268)
T ss_dssp CEEEEEECSCGGGC-HHHHHHHHHH-HCCSE--EEEECC
T ss_pred CEEEEEehhHHHHH-HHHHHHHHHH-cCCCE--EEEEec
Confidence 35899999984321 1134556533 35785 899998
No 38
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=77.60 E-value=0.24 Score=47.43 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=24.2
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006279 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 107 i~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
+.|.||||+|........|.+||.. ..||| |+|||+
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 37 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA-SGADI--VCVQEL 37 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH-TTCSE--EEEECC
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh-cCCCE--EEEEEe
Confidence 5689999998432211136777753 45787 788999
No 39
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=75.95 E-value=0.2 Score=48.90 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=22.9
Q ss_pred ccceeeecCce-eEEEecc-CCCCCCCCCCeeeEEEE
Q 006279 572 CDRILWLGKGI-KQLAYTR-AEILLSDHRPVSSTFLV 606 (652)
Q Consensus 572 CDRIL~~g~~i-~~l~Y~s-~e~~~SDHrPV~A~F~v 606 (652)
.|+||....-. +.....- .+...|||.||.+.|..
T Consensus 221 ID~il~s~~~~~~~~~~~i~~~~~~SDH~Pv~~~~~~ 257 (265)
T 3g91_A 221 LDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEIEL 257 (265)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred EEEEEECHHHHhhhcEEEEeCCCCCCCcceEEEEhhh
Confidence 89999876422 1222222 24578999999998854
No 40
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=71.13 E-value=0.44 Score=44.79 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=24.1
Q ss_pred EEEEeeeeCCCCCCCCC-CCcccccCCCCCCCEEEEeeeee
Q 006279 106 RVTIGTWNVAGRQPYED-LDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 106 ri~vgTwNV~G~~p~~~-ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
.+.|.||||+|...... ..|.+||.. ..||| |+|||+
T Consensus 7 ~lri~t~Nv~g~~~~~~~~~~~~~i~~-~~~DI--v~LQE~ 44 (238)
T 1vyb_A 7 HITILTLNINGLNSAIKRHRLASWIKS-QDPSV--CCIQET 44 (238)
T ss_dssp CEEEEEEECSCCCSHHHHHHHHHHHHH-HCCSE--EEEECC
T ss_pred cceEEEEecccCCchhhHHHHHHHHHH-cCCCE--EEEecc
Confidence 36789999999542210 135566643 34686 889998
No 41
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=69.59 E-value=0.56 Score=44.94 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=22.4
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006279 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 107 i~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
+.|.||||+|..... ..|.+||.. ..||| |+|||+
T Consensus 2 lrv~t~Nv~g~~~~~-~~i~~~i~~-~~~Di--i~lQE~ 36 (257)
T 2voa_A 2 LKIATFNVNSIRSRL-HIVIPWLKE-NKPDI--LCMQET 36 (257)
T ss_dssp EEEEEEECSCGGGTH-HHHHHHHHH-HCCSE--EEEECC
T ss_pred eEEEEEecCChHHHH-HHHHHHHhh-cCCCE--EEEEEe
Confidence 568999999843221 124455532 35786 889999
No 42
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=68.45 E-value=0.43 Score=46.79 Aligned_cols=37 Identities=32% Similarity=0.593 Sum_probs=24.2
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006279 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 106 ri~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
.+.|.||||+|........|..||.. ..||| |+|||+
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 64 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKKGLDWVKE-EAPDI--LCLQET 64 (285)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH-HCCSE--EEEECC
T ss_pred ceEEEEEecccChhhhhhhHHHHHHh-cCCCE--EEEEEe
Confidence 47789999998432111226666643 35685 889999
No 43
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=66.87 E-value=0.5 Score=47.88 Aligned_cols=37 Identities=32% Similarity=0.571 Sum_probs=24.8
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006279 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 106 ri~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
.+.|.||||+|........|..||.. ..||| |+|||+
T Consensus 61 ~lrv~t~Nv~g~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 97 (318)
T 1hd7_A 61 TLKICSWNVDGLRAWIKKKGLDWVKE-EAPDI--LCLQET 97 (318)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH-HCCSE--EEEECC
T ss_pred ceEEEEEecCcchhhhhhhHHHHHHh-hCCCE--EEEEEc
Confidence 47789999998532212236677743 35687 889999
No 44
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=64.58 E-value=5.6 Score=40.77 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=38.5
Q ss_pred CceEEEEEEEEcCeEEEEecccCCCCCCChhHHHHHhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCc
Q 006279 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (652)
Q Consensus 422 NKGaVsVs~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl~r~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (652)
....++|++ . .+.|.+.|+.+.... .|.+.+..|... |.. .|..+...-.++++||||-
T Consensus 130 ~Rp~lgiri--~--~~~ff~tHa~a~~g~----da~a~v~~I~~~--~~~-----~~~~~~~~~pwii~GDFNr 188 (262)
T 2f1n_A 130 GRPLLGIRI--G--NDAFFTAHAIAMRNN----DAPALVEEVYNF--FRD-----SRDPVHQALNWMILGDFNR 188 (262)
T ss_dssp CCCEEEEEE--T--TEEEEEEECCSSSSC----SHHHHHHHHHHH--HHT-----CSSHHHHTCEEEEEEECSS
T ss_pred CCceEEEEE--C--CEEEEEEEecCCCCc----cHHHHHHHHHHH--Hhc-----CcccccCCCcEEEEecCCC
Confidence 677777776 2 489999999997432 367778888764 321 1110000127999999997
No 45
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=63.77 E-value=3.1 Score=40.20 Aligned_cols=36 Identities=31% Similarity=0.604 Sum_probs=22.8
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccC---------CCCCCCEEEEeeeee
Q 006279 106 RVTIGTWNVAGRQPYEDLDIDDWLC---------TQEPADIYIFGFQEV 145 (652)
Q Consensus 106 ri~vgTwNV~G~~p~~~ldl~~WL~---------~~~~~DIYvlGfQEi 145 (652)
.|.|.||||.+..+... -..|-. ....||| |||||+
T Consensus 3 ~l~v~t~Ni~~~~~~~~--~~~~~~r~~~i~~~i~~~~~DI--v~LQEv 47 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDS--LNNWQYRKDRVCQFIKDHELDI--VGMQEV 47 (267)
T ss_dssp EEEEEEEECCCCCGGGG--GGSGGGTHHHHHHHHHHTTCSE--EEEESB
T ss_pred cEEEEEEEeccCCCCcc--ccCHHHHHHHHHHHHHHcCCCE--EEEecC
Confidence 47789999998654322 123422 1235786 889999
No 46
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=63.40 E-value=0.61 Score=44.43 Aligned_cols=34 Identities=32% Similarity=0.530 Sum_probs=21.9
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006279 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 108 ~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
.|.||||+|..... ..|.+||.. ..||| |+|||+
T Consensus 2 rv~t~Nv~~~~~~~-~~i~~~i~~-~~~DI--v~LQE~ 35 (256)
T 2jc4_A 2 KITTWNVNSLNVRL-PQVQNLLAD-NPPDI--LVLQEL 35 (256)
T ss_dssp EEEEEECSCHHHHH-HHHHHHHHS-SCCSE--EEEECC
T ss_pred EEEEEEcCCcHHHH-HHHHHHHHh-cCCCE--EEEEee
Confidence 57899999832111 124556643 45787 788998
No 47
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=62.90 E-value=0.64 Score=51.00 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=24.3
Q ss_pred EEEEeeeeCCCCCCCC--C-CCcccccCCCCCCCEEEEeeeee
Q 006279 106 RVTIGTWNVAGRQPYE--D-LDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 106 ri~vgTwNV~G~~p~~--~-ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
.+.|.||||+|..... . ..|.+||.. ..||| |+|||+
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~~-~~pDI--VcLQEt 188 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFMEA-EKPDV--LCLQET 188 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHHH-HCCSE--EEEECC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHHH-cCCCE--EEEEec
Confidence 4778999999942111 0 136777754 34686 889998
No 48
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=60.48 E-value=1.4 Score=42.23 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=21.5
Q ss_pred EEEeeeeCCCCCCCCCC--------CcccccCCCCCCCEEEEeeeee
Q 006279 107 VTIGTWNVAGRQPYEDL--------DIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 107 i~vgTwNV~G~~p~~~l--------dl~~WL~~~~~~DIYvlGfQEi 145 (652)
+.|.||||.+..+.... -|..+|. ...||| |||||+
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~-~~~~DI--v~LQEv 44 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLIN-FHDWSL--CCIQEV 44 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHH-HHCCSE--EEEEEE
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHH-HcCCCE--EEEeCC
Confidence 35899999985543211 0222332 234687 889999
No 49
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=58.83 E-value=1.7 Score=41.55 Aligned_cols=33 Identities=18% Similarity=0.096 Sum_probs=23.3
Q ss_pred ccceeeecCceeEEEecc-----CCCCCCCCCCeeeEEE
Q 006279 572 CDRILWLGKGIKQLAYTR-----AEILLSDHRPVSSTFL 605 (652)
Q Consensus 572 CDRIL~~g~~i~~l~Y~s-----~e~~~SDHrPV~A~F~ 605 (652)
.|+||..+ ++....+.. .....|||.||.|.|.
T Consensus 228 iD~i~~s~-~~~~~~~~v~~~~~~~~~~SDH~Pv~~~l~ 265 (266)
T 3teb_A 228 LDYIFSNK-ELKVKESKVIFNNKNKEIVSDHFGIEVKIE 265 (266)
T ss_dssp CEEEEESS-CCCEEEEEEESSSSSSCCCSSSCEEEEEEC
T ss_pred eEEEEeCC-CeEEEEEEEEeCCCCCCCcCCccCEEEEEE
Confidence 89999975 444444432 1256799999999885
No 50
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=57.76 E-value=0.84 Score=43.94 Aligned_cols=36 Identities=17% Similarity=0.004 Sum_probs=24.4
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006279 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (652)
Q Consensus 106 ri~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (652)
.+.|.||||+|.....+ .|..|+.. ..||| |++||+
T Consensus 19 ~lri~s~Nv~~~~~~~~-~l~~~i~~-~~~DI--v~lQE~ 54 (245)
T 1wdu_A 19 PYRVLQANLQRKKLATA-ELAIEAAT-RKAAI--ALIQEP 54 (245)
T ss_dssp CEEEEEEECTTCHHHHH-HHHHHHHH-HTCSE--EEEESC
T ss_pred ceeeeeeeccccHHHHH-HHHHHHhh-cCCCE--EEEEcc
Confidence 37789999998432111 36677744 45686 889998
No 51
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=57.35 E-value=7.2 Score=38.19 Aligned_cols=15 Identities=40% Similarity=0.437 Sum_probs=13.1
Q ss_pred CCCCCCCCeeeEEEE
Q 006279 592 ILLSDHRPVSSTFLV 606 (652)
Q Consensus 592 ~~~SDHrPV~A~F~v 606 (652)
...|||.||.|.|.+
T Consensus 291 ~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 291 NDYSDHYPVEATISM 305 (306)
T ss_dssp CCSCSSCCEEEEEEC
T ss_pred cCCCCCcceeEEEEe
Confidence 578999999999865
No 52
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=54.73 E-value=2.8 Score=43.00 Aligned_cols=39 Identities=21% Similarity=0.511 Sum_probs=25.4
Q ss_pred EEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeeee
Q 006279 106 RVTIGTWNVAGRQPYED----LDIDDWLCTQEPADIYIFGFQEVV 146 (652)
Q Consensus 106 ri~vgTwNV~G~~p~~~----ldl~~WL~~~~~~DIYvlGfQEiV 146 (652)
.+.|+|||+-|..+..+ .+|..-+....++|| +++||+=
T Consensus 15 ~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DI--vaLQEag 57 (262)
T 2f1n_A 15 DFRVATWNLQGASATTESKWNINVRQLISGENAVDI--LAVQEAG 57 (262)
T ss_dssp GCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSE--EEEEEEC
T ss_pred eeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCE--EEEeecC
Confidence 46789999999554333 234442323456898 7889993
No 53
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=51.18 E-value=2.1 Score=42.72 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=23.0
Q ss_pred eEEEEEeeeeCCCCCCCCCCCcccccC---------CCCCCCEEEEeeeee
Q 006279 104 DVRVTIGTWNVAGRQPYEDLDIDDWLC---------TQEPADIYIFGFQEV 145 (652)
Q Consensus 104 ~~ri~vgTwNV~G~~p~~~ldl~~WL~---------~~~~~DIYvlGfQEi 145 (652)
.-.|.|.||||....+........|-. ....||| |||||+
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DI--v~LQEv 52 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDI--FGTQEC 52 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSE--EEEESB
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCE--EEEeCC
Confidence 346889999997644321100123411 1245785 899999
No 54
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=50.91 E-value=5.1 Score=40.95 Aligned_cols=39 Identities=28% Similarity=0.524 Sum_probs=27.7
Q ss_pred EEEeeeeCCCCCCCCC-----CCcccccCCCCCCCEEEEeeeeeeeC
Q 006279 107 VTIGTWNVAGRQPYED-----LDIDDWLCTQEPADIYIFGFQEVVPL 148 (652)
Q Consensus 107 i~vgTwNV~G~~p~~~-----ldl~~WL~~~~~~DIYvlGfQEiV~L 148 (652)
+.|+|||+-| .++.+ ..+..||.....+|| |.+||+--+
T Consensus 5 ~kv~TwNi~g-~~~~~~~k~~~~i~~~i~~~~~~DI--laLQEa~~~ 48 (261)
T 1sr4_B 5 FKVATWNLQG-SSAVNESKWNINVRQLLSGEQGADI--LMVQEAGSL 48 (261)
T ss_dssp SCEEEEECCC-CSSSSHHHHHHHHHHHHCSTTCCSE--EEEESCCSC
T ss_pred cEEEEEEcCC-CCCCChhhhhhHHHHHHcCCCCCCE--EEEecCCCC
Confidence 3489999999 44433 136778876577898 667999554
No 55
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=46.51 E-value=9.1 Score=37.46 Aligned_cols=15 Identities=33% Similarity=0.157 Sum_probs=12.5
Q ss_pred CCCCCCCCeeeEEEE
Q 006279 592 ILLSDHRPVSSTFLV 606 (652)
Q Consensus 592 ~~~SDHrPV~A~F~v 606 (652)
...|||.||.|.|.+
T Consensus 286 ~~~SDH~Pv~a~l~~ 300 (301)
T 1zwx_A 286 QDFSDHYPVVGFTDN 300 (301)
T ss_dssp CCSSSSCCEEEEEC-
T ss_pred cCCCCCccEEEEEec
Confidence 478999999999864
No 56
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=33.80 E-value=5.3 Score=40.47 Aligned_cols=37 Identities=14% Similarity=-0.035 Sum_probs=22.0
Q ss_pred EEEEeeeeCCCCCCCCCCCccccc------C---CCCCCCEEEEeeeee
Q 006279 106 RVTIGTWNVAGRQPYEDLDIDDWL------C---TQEPADIYIFGFQEV 145 (652)
Q Consensus 106 ri~vgTwNV~G~~p~~~ldl~~WL------~---~~~~~DIYvlGfQEi 145 (652)
.|.|.||||.+..+..+.+ ..|- . ....||| |||||+
T Consensus 29 ~lrV~T~Ni~~~~~~~~~~-~~~~~R~~~i~~~~~~~~pDI--v~LQEv 74 (317)
T 3i41_A 29 DLKLVSHNVYMLSTVLYPN-WGQYKRADLIGQSSYIKNNDV--VIFNEA 74 (317)
T ss_dssp CCCEEEEEEEECCTTTSTT-SCHHHHHHHHHHCSTTSSCSE--EEEEEE
T ss_pred ceEEEEEecccCccccCCC-ccHHHHHHHHHHHhhccCCCE--EEEEee
Confidence 5778999999953221110 1231 1 1246786 899999
Done!